Pregenerated sensors for PPA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020089Ensembl transcript IDs: ENSMUST00000020286.7
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAAATTTAGAGCTTGGAAAATCTTTTGCATCTAATGCTTCCAGGTaGACAGGATGCGGCCGTAACAGCTCGTGTTCCAGAGGAAGCTCT | + |
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Preference number: 1 (lower is better) Translates to: RNLELGKSFASNASR*TGCGRNSSCSRGSS Trigger: AGAGCTTCCTCTGGAACACGAGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAGATTTTCCAAGCTCTAAATTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR GCA 90 bp | GAAAATCTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTCCACAGCAGCCAGTGTaGTTGTCACTGTGTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: ENLLHLMLPGEQDAAVTAPQQPV*LSLCPG Trigger: CCCAGGACACAGTGACAAGCACACTGGCTGCTGTGG...AGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAGATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CCA 90 bp | GCACATCCATGCACAAATGACTTCCATGTCCCCACGGCTTTGAGAGCTAAGGTTCTTGTCACTGTGTCCTaGGTCTTCCCATGTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: AHPCTNDFHVPTALRAKVLVTVS*VFPCLR Trigger: CCTCAGACATGGGAAGACCCAGGACACAGTGACAAG...AACCTTAGCTCTCAAAGCCGTGGGGACATGGAAGTCATTTGTGCATGGATGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CCA 90 bp | CTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTCGTGTTTCTCCATTTTGGCGTTaGACCAGCGTGGAACCTCAA | + |
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Preference number: 4 (lower is better) Translates to: LLHLMLPGEQDAAVTARVSPFWR*TSVEPQ Trigger: TTGAGGTTCCACGCTGGTCCAACGCCAAAATGGAGA...AACACGAGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR GCA 90 bp | CTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTCGTGTTATCTTTATAATTGGCTaGGTCCGGATCGTCCACATT | + |
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Preference number: 4 (lower is better) Translates to: LLHLMLPGEQDAAVTARVIFIIG*VRIVHI Trigger: AATGTGGACGATCCGGACGCAGCCAATTATAAAGAT...AACACGAGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CCA 90 bp | GCACATCCATGCACAAATGACTTCCATGTCCCCACGGCTTTGAGAGCTAAGGTTAAATATCTTTATAATTaGCTGCGTCCGGATCGTCCA | + |
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Preference number: 4 (lower is better) Translates to: AHPCTNDFHVPTALRAKVKYLYN*LRPDRP Trigger: TGGACGATCCGGACGCAGCCAATTATAAAGATATTT...AACCTTAGCTCTCAAAGCCGTGGGGACATGGAAGTCATTTGTGCATGGATGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR TCA 90 bp | GAAAATCTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTTGGTGTTCATGCAACTaGTTCCTTTCCCATCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: ENLLHLMLPGEQDAAVTAWCSCN*FLSHLF Trigger: AAACAGATGGGAAAGGAATCAGTTGCATGAACACCA...AGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAGATTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CCA 90 bp | GAAAATCTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTTGGAACATCATGAAATaGAGAAATGTACTGCCCTTT | + |
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Preference number: 4 (lower is better) Translates to: ENLLHLMLPGEQDAAVTAWNIMK*RNVLPF Trigger: AAAGGGCAGTACATTTCTCCATTTCATGATGTTCCA...AGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAGATTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CAA 90 bp | GCACATCCATGCACAAATGACTTCCATGTCCCCACGGCTTTGAGAGCTAAGGTTATCTCCATTTTGGCGTaGGACCAGCGTGGAACCTCA | + |
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Preference number: 5 (lower is better) Translates to: AHPCTNDFHVPTALRAKVISILA*DQRGTS Trigger: TGAGGTTCCACGCTGGTCCAACGCCAAAATGGAGAT...AACCTTAGCTCTCAAAGCCGTGGGGACATGGAAGTCATTTGTGCATGGATGTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CAA 90 bp | GAAAATCTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTACATCGATTGGGTCGTaGTCACCACAGCAGCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: ENLLHLMLPGEQDAAVTATSIGS*SPQQPV Trigger: CACTGGCTGCTGTGGTGACAACGACCCAATCGATGT...AGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAGATTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS-3UTR CAA 90 bp | GAAAATCTTTTGCATCTAATGCTTCCAGGTGAACAGGATGCGGCCGTAACAGCTGTAGCAATCTCCATTTaGGCGTTGGACCAGCGTGGA | + |
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Preference number: 5 (lower is better) Translates to: ENLLHLMLPGEQDAAVTAVAISI*ALDQRG Trigger: TCCACGCTGGTCCAACGCCAAAATGGAGATTGCTAC...AGCTGTTACGGCCGCATCCTGTTCACCTGGAAGCATTAGATGCAAAAGATTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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| CDS CAA 72 bp | ACCTTCACCCTGATTATCTCACCTCTGGCACACACCTaGCTTCCGATTTCACAAACATCGATTGGGTCGTTG | + |
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Preference number: 6 (lower is better) Translates to: TFTLIISPLAHT*LPISQTSIGSL Trigger: CAACGACCCAATCGATGTTTGTGAAATCGGAAGCAAGGTGTGTGCCAGAGGTGAGATAATCAGGGTGAAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020286.7 |
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