RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POU5F2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093668

Ensembl transcript IDs: ENSMUST00000175955.4

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCACAAAAAGAAGCAAGTaGTACTCTTTAACTTCCCTC +
Preference number: 2 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCTKRSK*YSLTSL
Trigger: GAGGGAAGTTAAAGAGTATCACTTGCTTCTTTTTGT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
3UTR-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCATAGCCATAAAGATATaGCAATGCCAACACCGGGGG +
Preference number: 3 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCIAIKI*QCQHRG
Trigger: CCCCCGGTGTTGGCATTGCAATATCTTTATGGCTAT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGCGTCTCTCTCTGCTTaGACGTCTCCGCTTCCGGGC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCASLSA*TSPLPG
Trigger: GCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR TCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCACATGTTGGCAAGGCTaGGCTGCTGGGCCTCGAAGC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCTCWQG*AAGPRS
Trigger: GCTTCGAGGCCCAGCAGCTCAGCCTTGCCAACATGT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCTGGGACCAGGCCCTTaGCTCACAAGCTCTGTAGGG +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCLGPGP*LTSSVG
Trigger: CCCTACAGAGCTTGTGAGGCAAGGGCCTGGTCCCAG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTTGGCAAGGCTGAGCTaGTGGGCCTCGAAGCGGCAT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCLARLS*WASKRH
Trigger: ATGCCGCTTCGAGGCCCAGCAGCTCAGCCTTGCCAA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGAAAGGAGACCCAGTTaGCCCCACATCCTCCCTCCG +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCERRPS*PHILPP
Trigger: CGGAGGGAGGATGTGGGGGCAACTGGGTCTCCTTTC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGAGCCCTGGTGCCATaGGAAAGCACACTGGTGGAC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGALVP*ESTLVD
Trigger: GTCCACCAGTGTGCTTTCCCATGGCACCAGGGCTCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGCCCAGAGTGGTGGTTaGGGCAGACAAAAGGGCTCC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCAQSGG*GRQKGS
Trigger: GGAGCCCTTTTGTCTGCCCCAACCACCACTCTGGGC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGAGGCCCAGAGTGGTaGTTGGGGCAGACAAAAGGG +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGGPEW*LGQTKG
Trigger: CCCTTTTGTCTGCCCCAACCACCACTCTGGGCCTCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGCCTGGACAGATGCCTaGACCCATACTTGGTCGCAC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCAWTDA*THTWSH
Trigger: GTGCGACCAAGTATGGGTCCAGGCATCTGTCCAGGC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCCATACCTCAGGGCCTaGACAGATGCCTGGACCCAT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCPYLRA*TDAWTH
Trigger: ATGGGTCCAGGCATCTGTCCAGGCCCTGAGGTATGG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTCCTCAGAGGAACTCTaGGACCAGGCCCTTGCCTCA +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCSSEEL*DQALAS
Trigger: TGAGGCAAGGGCCTGGTCCCAGAGTTCCTCTGAGGA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGCACACTGGTGGACCTaGGAAAGGAGACCCAGTTGC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCAHWWT*ERRPSC
Trigger: GCAACTGGGTCTCCTTTCCCAGGTCCACCAGTGTGC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTGGGGAGGCCCAGAGTaGTGGTTGGGGCAGACAAAA +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCWGGPE*WLGQTK
Trigger: TTTTGTCTGCCCCAACCACCACTCTGGGCCTCCCCA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR TCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTCGGAATTCATAAGGTaGGGAGCCCAGAGGCACTCC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCSEFIR*GAQRHS
Trigger: GGAGTGCCTCTGGGCTCCTCACCTTATGAATTCCGA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR TCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCAGGGGTGTAAGGCATaGTCCCTCATAGTGGGGGAA +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCQGCKA*SLIVGE
Trigger: TTCCCCCACTATGAGGGATCATGCCTTACACCCCTG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGCCACCACCACTATTaGCTGAGAGAGGGAAGACGT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGHHHY*LREGRR
Trigger: ACGTCTTCCCTCTCTCAGGCAATAGTGGTGGTGGCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGTCGCACCATTAATCTaGTTGTGGCTGCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCVAPLI*LWLPGC
Trigger: GCAGCCAGGCAGCCACAAGCAGATTAATGGTGCGAC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCAATGCGTCTCTCTCTaGTTGCACGTCTCCGCTTCC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCQCVSL*LHVSAS
Trigger: GGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGCCAACTGCCCATCTaGCTCCGGTTAGAAAACCAC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGQLPI*LRLENH
Trigger: GTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCAAAATGGAGCCCTGGTaGCATGGGAAAGCACACTGG +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCKMEPW*HGKAHW
Trigger: CCAGTGTGCTTTCCCATGGCACCAGGGCTCCATTTT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGAGGTATCATTGGTTaGCCAACTGCCCATCTGGCT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGGIIG*PTAHLA
Trigger: AGCCAGATGGGCAGTTGGCCAACCAATGATACCTCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTCCGGGAGGTATCATTaGTTGGCCAACTGCCCATCT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCSGRYH*LANCPS
Trigger: AGATGGGCAGTTGGCCAACCAATGATACCTCCCGGA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCATGGGAAAGCACACTaGTGGACCTGGGAAAGGAGA +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCHGKAH*WTWERR
Trigger: TCTCCTTTCCCAGGTCCACCAGTGTGCTTTCCCATG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTGGGGGAAATCAAAATaGAGCCCTGGTGCCATGGGA +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCWGKSK*SPGAMG
Trigger: TCCCATGGCACCAGGGCTCCATTTTGATTTCCCCCA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTCCTCGTACAGGAAATaGGGTAGAGGAGTACAGGGG +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCSSYRK*GRGVQG
Trigger: CCCCTGTACTCCTCTACCCCATTTCCTGTACGAGGA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCATCAAAATGGAGCCCTaGTGCCATGGGAAAGCACAC +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCIKMEP*CHGKAH
Trigger: GTGTGCTTTCCCATGGCACCAGGGCTCCATTTTGAT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCCATCTCTTTCTGTATaGCTGAAACGTCCTCTGGCA +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCPSLSV*LKRPLA
Trigger: TGCCAGAGGACGTTTCAGCCATACAGAAAGAGATGG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCAACGTCCTCTGGCAGTaGCAAATTTGGCATGTATCT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCNVLWQ*QIWHVS
Trigger: AGATACATGCCAAATTTGGCACTGCCAGAGGACGTT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCAGTTCCTTGGCTAGCTaGTCCATCTCTTTCTGTATG +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCSSLAS*SISFCM
Trigger: CATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR GCA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGATCATCTCCATTCTaGATATGCCCAGAAGGTTCT +
Preference number: 4 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGSSPF*ICPEGS
Trigger: AGAACCTTCTGGGCATATGCAGAATGGAGATGATCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 90 bp AGACCCAGTTGCCCCCACATCCTCCCTCCGGGAGGTATCATTGGTTaGCCAACTGCCCATCTGGCTCCGGTTAGAAAACCACACTTGGAC +
Preference number: 5 (lower is better)
Translates to: RPSCPHILPPGGIIG*PTAHLAPVRKPHLD
Trigger: GTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCCAACCAATGATACCTCCCGGAGGGAGGATGTGGGGGCAACTGGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS TCA 90 bp CTCACAAGCTCTGTAGGGTGCTATCCCACCTCGGAATTCATAAGGTaGGGAGCCCAGAGGCACTCCCCATACCTCAGGGCCTGGACAGAT +
Preference number: 5 (lower is better)
Translates to: LTSSVGCYPTSEFIR*GAQRHSPYLRAWTD
Trigger: ATCTGTCCAGGCCCTGAGGTATGGGGAGTGCCTCTGGGCTCCTCACCTTATGAATTCCGAGGTGGGATAGCACCCTACAGAGCTTGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 90 bp CTCCCAATGCGTCTCTCTCTGCTTGCACGTCTCCGCTTCCGGGCCTaGTCCAGGATCATCTCCATTCTGCATATGCCCAGAAGGTTCTTC +
Preference number: 5 (lower is better)
Translates to: LPMRLSLLARLRFRA*SRIISILHMPRRFF
Trigger: GAAGAACCTTCTGGGCATATGCAGAATGGAGATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 90 bp CCTGGACCCATACTTGGTCGCACCATTAATCTGCTTGTGGCTGCCTaGCTGCTCAACCATGTTGGGGTGTCAACTTCCAGGCCACCACCA +
Preference number: 5 (lower is better)
Translates to: PGPILGRTINLLVAA*LLNHVGVSTSRPPP
Trigger: TGGTGGTGGCCTGGAAGTTGACACCCCAACATGGTTGAGCAGCCAGGCAGCCACAAGCAGATTAATGGTGCGACCAAGTATGGGTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 90 bp ACATCCTCCCTCCGGGAGGTATCATTGGTTGGCCAACTGCCCATCTaGCTCCGGTTAGAAAACCACACTTGGACCAGGTCTTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: TSSLREVSLVGQLPI*LRLENHTWTRSFCS
Trigger: GCTGCAGAAAGACCTGGTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCCAACCAATGATACCTCCCGGAGGGAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 90 bp GAGTACCCCAGGGTCATCCTCTTTTGTCTCAGTTCCTTGGCTAGCTaGTCCATCTCTTTCTGTATGGCTGAAACGTCCTCTGGCAGTGCC +
Preference number: 5 (lower is better)
Translates to: EYPRVILFCLSSLAS*SISFCMAETSSGSA
Trigger: GGCACTGCCAGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAAGAGGATGACCCTGGGGTACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 90 bp ATTGCAAGAACAGTTTTTCCAGATTGCTCCCAATGCGTCTCTCTCTaGTTGCACGTCTCCGCTTCCGGGCCTGCTCCAGGATCATCTCCA +
Preference number: 5 (lower is better)
Translates to: IARTVFPDCSQCVSL*LHVSASGPAPGSSP
Trigger: TGGAGATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAACTGTTCTTGCAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 90 bp CGGCCTGTGAGTACCCCAGGGTCATCCTCTTTTGTCTCAGTTCCTTaGCTAGCTGCTCCATCTCTTTCTGTATGGCTGAAACGTCCTCTG +
Preference number: 5 (lower is better)
Translates to: RPVSTPGSSSFVSVP*LAAPSLSVWLKRPL
Trigger: CAGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAAGAGGATGACCCTGGGGTACTCACAGGCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 90 bp CCGGAGGCGCCCAGCAATATAGCTGATTTGCTGGGGCGTAGGCTCTaGACATTGCAAGAACAGTTTTTCCAGATTGCTCCCAATGCGTCT +
Preference number: 5 (lower is better)
Translates to: PEAPSNIADLLGRRL*TLQEQFFQIAPNAS
Trigger: AGACGCATTGGGAGCAATCTGGAAAAACTGTTCTTGCAATGTCCAGAGCCTACGCCCCAGCAAATCAGCTATATTGCTGGGCGCCTCCGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 90 bp TTGCACGTCTCCGCTTCCGGGCCTGCTCCAGGATCATCTCCATTCTaGATATGCCCAGAAGGTTCTTCTCATCTACTTCCTCTAACCACA +
Preference number: 5 (lower is better)
Translates to: LHVSASGPAPGSSPF*ICPEGSSHLLPLTT
Trigger: TGTGGTTAGAGGAAGTAGATGAGAAGAACCTTCTGGGCATATGCAGAATGGAGATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 90 bp TCTTTTGTCTCAGTTCCTTGGCTAGCTGCTCCATCTCTTTCTGTATaGCTGAAACGTCCTCTGGCAGTGCCAAATTTGGCATGTATCTCA +
Preference number: 5 (lower is better)
Translates to: SFVSVPWLAAPSLSV*LKRPLAVPNLACIS
Trigger: TGAGATACATGCCAAATTTGGCACTGCCAGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGCCCAGAGTGGTGGTaGGGGCAGACAAAAGGGCTC +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGPEWW*GQTKGL
Trigger: GAGCCCTTTTGTCTGCCCCAACCACCACTCTGGGCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCAGAGAGGGAAGACGTTaGAAGACCTCCGCCCGGCCA +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCREGRR*KTSARP
Trigger: TGGCCGGGCGGAGGTCTTCAAACGTCTTCCCTCTCT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTCTGGGACCAGGCCCTaGCCTCACAAGCTCTGTAGG +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCSGTRP*PHKLCR
Trigger: CCTACAGAGCTTGTGAGGCAAGGGCCTGGTCCCAGA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCGCAGCTTCCACATGTaGGCAAGGCTGAGCTGCTGG +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCRSFHM*ARLSCW
Trigger: CCAGCAGCTCAGCCTTGCCAACATGTGGAAGCTGCG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCAGGCCACCACCACTATaGCCTGAGAGAGGGAAGACG +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCRPPPL*PERGKT
Trigger: CGTCTTCCCTCTCTCAGGCAATAGTGGTGGTGGCCT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCGGGAGGTATCATTGGTaGGCCAACTGCCCATCTGGC +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCGRYHW*ANCPSG
Trigger: GCCAGATGGGCAGTTGGCCAACCAATGATACCTCCC...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCTGGCAGTGCCAAATTaGGCATGTATCTCAAGGCGA +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCLAVPN*ACISRR
Trigger: TCGCCTTGAGATACATGCCAAATTTGGCACTGCCAG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCTTTTGTCTCAGTTCCTaGGCTAGCTGCTCCATCTCT +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCFCLSS*ASCSIS
Trigger: AGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAA...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCCGTAGGCTCTGGACATaGCAAGAACAGTTTTTCCAG +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCRRLWT*QEQFFQ
Trigger: CTGGAAAAACTGTTCTTGCAATGTCCAGAGCCTACG...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS-3UTR CAA 90 bp GGGTTCTGCTTGTTTTTAATAAACACTAGTACAGTAGTTTTATGTGACTTGTGCAACAGTTTTTCCAGATaGCTCCCAATGCGTCTCTCT +
Preference number: 5 (lower is better)
Translates to: GFCLFLINTSTVVLCDLCNSFSR*LPMRLS
Trigger: AGAGAGACGCATTGGGAGCAATCTGGAAAAACTGTT...GCACAAGTCACATAAAACTACTGTACTAGTGTTTATTAAAAACAAGCAGAACCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp CCAACTGCCCATCTGGCTCCGGTTAGAAAACCACACTaGGACCAGGTCTTTCTGCAGCCGGAGGCGCCCAGC +
Preference number: 6 (lower is better)
Translates to: PTAHLAPVRKPH*DQVFLQPEAPS
Trigger: GCTGGGCGCCTCCGGCTGCAGAAAGACCTGGTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp GCAGGTATCCTCAGAGGAACTCTGGGACCAGGCCCTTaGCTCACAAGCTCTGTAGGGTGCTATCCCACCTCG +
Preference number: 6 (lower is better)
Translates to: AGILRGTLGPGP*LTSSVGCYPTS
Trigger: CGAGGTGGGATAGCACCCTACAGAGCTTGTGAGGCAAGGGCCTGGTCCCAGAGTTCCTCTGAGGATACCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 72 bp CAACTGCCCATCTGGCTCCGGTTAGAAAACCACACTTaGACCAGGTCTTTCTGCAGCCGGAGGCGCCCAGCA +
Preference number: 6 (lower is better)
Translates to: QLPIWLRLENHT*TRSFCSRRRPA
Trigger: TGCTGGGCGCCTCCGGCTGCAGAAAGACCTGGTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp CCAGTTGCCCCCACATCCTCCCTCCGGGAGGTATCATaGGTTGGCCAACTGCCCATCTGGCTCCGGTTAGAA +
Preference number: 6 (lower is better)
Translates to: PVAPTSSLREVS*VGQLPIWLRLE
Trigger: TTCTAACCGGAGCCAGATGGGCAGTTGGCCAACCAATGATACCTCCCGGAGGGAGGATGTGGGGGCAACTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 90 bp GCACTCCCCATACCTCAGGGCCTGGACAGATGCCTGGACCCATACTaGGTCGCACCATTAATCTGCTTGTGGCTGCCTGGCTGCTCAACC +
Preference number: 6 (lower is better)
Translates to: ALPIPQGLDRCLDPY*VAPLICLWLPGCST
Trigger: GGTTGAGCAGCCAGGCAGCCACAAGCAGATTAATGGTGCGACCAAGTATGGGTCCAGGCATCTGTCCAGGCCCTGAGGTATGGGGAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS TCA 72 bp TCTGTAGGGTGCTATCCCACCTCGGAATTCATAAGGTaGGGAGCCCAGAGGCACTCCCCATACCTCAGGGCC +
Preference number: 6 (lower is better)
Translates to: SVGCYPTSEFIR*GAQRHSPYLRA
Trigger: GGCCCTGAGGTATGGGGAGTGCCTCTGGGCTCCTCACCTTATGAATTCCGAGGTGGGATAGCACCCTACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp CGTCTCTCTCTGCTTGCACGTCTCCGCTTCCGGGCCTaGTCCAGGATCATCTCCATTCTGCATATGCCCAGA +
Preference number: 6 (lower is better)
Translates to: RLSLLARLRFRA*SRIISILHMPR
Trigger: TCTGGGCATATGCAGAATGGAGATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 72 bp TGCCCCCACATCCTCCCTCCGGGAGGTATCATTGGTTaGCCAACTGCCCATCTGGCTCCGGTTAGAAAACCA +
Preference number: 6 (lower is better)
Translates to: CPHILPPGGIIG*PTAHLAPVRKP
Trigger: TGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCCAACCAATGATACCTCCCGGAGGGAGGATGTGGGGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 90 bp AAGGTCCTGGGCAGGTATCCTCAGAGGAACTCTGGGACCAGGCCCTaGCCTCACAAGCTCTGTAGGGTGCTATCCCACCTCGGAATTCAT +
Preference number: 6 (lower is better)
Translates to: KVLGRYPQRNSGTRP*PHKLCRVLSHLGIH
Trigger: ATGAATTCCGAGGTGGGATAGCACCCTACAGAGCTTGTGAGGCAAGGGCCTGGTCCCAGAGTTCCTCTGAGGATACCTGCCCAGGACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp ACAGTTTTTCCAGATTGCTCCCAATGCGTCTCTCTCTaGTTGCACGTCTCCGCTTCCGGGCCTGCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: TVFPDCSQCVSL*LHVSASGPAPG
Trigger: TCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAACTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp ATACCTCAGGGCCTGGACAGATGCCTGGACCCATACTaGGTCGCACCATTAATCTGCTTGTGGCTGCCTGGC +
Preference number: 6 (lower is better)
Translates to: IPQGLDRCLDPY*VAPLICLWLPG
Trigger: GCCAGGCAGCCACAAGCAGATTAATGGTGCGACCAAGTATGGGTCCAGGCATCTGTCCAGGCCCTGAGGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp GTTTTTCCAGATTGCTCCCAATGCGTCTCTCTCTGCTaGCACGTCTCCGCTTCCGGGCCTGCTCCAGGATCA +
Preference number: 6 (lower is better)
Translates to: VFPDCSQCVSLC*HVSASGPAPGS
Trigger: TGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 90 bp TGCTGGGGCGTAGGCTCTGGACATTGCAAGAACAGTTTTTCCAGATaGCTCCCAATGCGTCTCTCTCTGCTTGCACGTCTCCGCTTCCGG +
Preference number: 6 (lower is better)
Translates to: CWGVGSGHCKNSFSR*LPMRLSLLARLRFR
Trigger: CCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAACTGTTCTTGCAATGTCCAGAGCCTACGCCCCAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 90 bp ATTGGTTGGCCAACTGCCCATCTGGCTCCGGTTAGAAAACCACACTaGGACCAGGTCTTTCTGCAGCCGGAGGCGCCCAGCAATATAGCT +
Preference number: 6 (lower is better)
Translates to: IGWPTAHLAPVRKPH*DQVFLQPEAPSNIA
Trigger: AGCTATATTGCTGGGCGCCTCCGGCTGCAGAAAGACCTGGTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCCAACCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp ATGTTGGGGTGTCAACTTCCAGGCCACCACCACTATTaGCTGAGAGAGGGAAGACGTTTGAAGACCTCCGCC +
Preference number: 6 (lower is better)
Translates to: MLGCQLPGHHHY*LREGRRLKTSA
Trigger: GGCGGAGGTCTTCAAACGTCTTCCCTCTCTCAGGCAATAGTGGTGGTGGCCTGGAAGTTGACACCCCAACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp TTTTTCCAGATTGCTCCCAATGCGTCTCTCTCTGCTTaGACGTCTCCGCTTCCGGGCCTGCTCCAGGATCAT +
Preference number: 6 (lower is better)
Translates to: FFQIAPNASLSA*TSPLPGLLQDH
Trigger: ATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 72 bp CTCCGGGAGGTATCATTGGTTGGCCAACTGCCCATCTaGCTCCGGTTAGAAAACCACACTTGGACCAGGTCT +
Preference number: 6 (lower is better)
Translates to: LREVSLVGQLPI*LRLENHTWTRS
Trigger: AGACCTGGTCCAAGTGTGGTTTTCTAACCGGAGCCAGATGGGCAGTTGGCCAACCAATGATACCTCCCGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 90 bp GCAAGAACAGTTTTTCCAGATTGCTCCCAATGCGTCTCTCTCTGCTaGCACGTCTCCGCTTCCGGGCCTGCTCCAGGATCATCTCCATTC +
Preference number: 6 (lower is better)
Translates to: ARTVFPDCSQCVSLC*HVSASGPAPGSSPF
Trigger: GAATGGAGATGATCCTGGAGCAGGCCCGGAAGCGGAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAACTGTTCTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp TCCGCTTCCGGGCCTGCTCCAGGATCATCTCCATTCTaGATATGCCCAGAAGGTTCTTCTCATCTACTTCCT +
Preference number: 6 (lower is better)
Translates to: SASGPAPGSSPF*ICPEGSSHLLP
Trigger: AGGAAGTAGATGAGAAGAACCTTCTGGGCATATGCAGAATGGAGATGATCCTGGAGCAGGCCCGGAAGCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 72 bp ATACTTGGTCGCACCATTAATCTGCTTGTGGCTGCCTaGCTGCTCAACCATGTTGGGGTGTCAACTTCCAGG +
Preference number: 6 (lower is better)
Translates to: ILGRTINLLVAA*LLNHVGVSTSR
Trigger: CCTGGAAGTTGACACCCCAACATGGTTGAGCAGCCAGGCAGCCACAAGCAGATTAATGGTGCGACCAAGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 90 bp TCGGCCTGTGAGTACCCCAGGGTCATCCTCTTTTGTCTCAGTTCCTaGGCTAGCTGCTCCATCTCTTTCTGTATGGCTGAAACGTCCTCT +
Preference number: 6 (lower is better)
Translates to: SACEYPRVILFCLSS*ASCSISFCMAETSS
Trigger: AGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAAGAGGATGACCCTGGGGTACTCACAGGCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp TCTGTATGGCTGAAACGTCCTCTGGCAGTGCCAAATTaGGCATGTATCTCAAGGCGATGTAAGGTCCTGGGC +
Preference number: 6 (lower is better)
Translates to: SVWLKRPLAVPN*ACISRRCKVLG
Trigger: GCCCAGGACCTTACATCGCCTTGAGATACATGCCAAATTTGGCACTGCCAGAGGACGTTTCAGCCATACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 72 bp TCAGTTCCTTGGCTAGCTGCTCCATCTCTTTCTGTATaGCTGAAACGTCCTCTGGCAGTGCCAAATTTGGCA +
Preference number: 6 (lower is better)
Translates to: SVPWLAAPSLSV*LKRPLAVPNLA
Trigger: TGCCAAATTTGGCACTGCCAGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CCA 72 bp CCCAGCAATATAGCTGATTTGCTGGGGCGTAGGCTCTaGACATTGCAAGAACAGTTTTTCCAGATTGCTCCC +
Preference number: 6 (lower is better)
Translates to: PSNIADLLGRRL*TLQEQFFQIAP
Trigger: GGGAGCAATCTGGAAAAACTGTTCTTGCAATGTCCAGAGCCTACGCCCCAGCAAATCAGCTATATTGCTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp GAGTACCCCAGGGTCATCCTCTTTTGTCTCAGTTCCTaGGCTAGCTGCTCCATCTCTTTCTGTATGGCTGAA +
Preference number: 6 (lower is better)
Translates to: EYPRVILFCLSS*ASCSISFCMAE
Trigger: TTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAAGAGGATGACCCTGGGGTACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS CAA 72 bp GTAGGCTCTGGACATTGCAAGAACAGTTTTTCCAGATaGCTCCCAATGCGTCTCTCTCTGCTTGCACGTCTC +
Preference number: 6 (lower is better)
Translates to: VGSGHCKNSFSR*LPMRLSLLARL
Trigger: GAGACGTGCAAGCAGAGAGAGACGCATTGGGAGCAATCTGGAAAAACTGTTCTTGCAATGTCCAGAGCCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4
CDS GCA 72 bp AGGGTCATCCTCTTTTGTCTCAGTTCCTTGGCTAGCTaGTCCATCTCTTTCTGTATGGCTGAAACGTCCTCT +
Preference number: 6 (lower is better)
Translates to: RVILFCLSSLAS*SISFCMAETSS
Trigger: AGAGGACGTTTCAGCCATACAGAAAGAGATGGAGCAGCTAGCCAAGGAACTGAGACAAAAGAGGATGACCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175955.4