Pregenerated sensors for POU5F1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024406Ensembl transcript IDs: ENSMUST00000025271.17
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AACCCCAAAGCTCCAGGTTCTCTTGTCTACCTCCCTTaGCTTGGCTCACAGCATCCCCAGGGAGGGCTGGTG | + |
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Preference number: 3 (lower is better) Translates to: NPKAPGSLVYLP*LGSQHPQGGLV Trigger: CACCAGCCCTCCCTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTTGGGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR TCA 90 bp | AAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGGAGAGAACGCCCAGGGTaGGCCCCACGTCGGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: KLQVLLSTSLALAHSIPRRERPG*APRRPG Trigger: CCCAGGCCGACGTGGGGCTCACCCTGGGCGTTCTCT...CCTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR CCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGCCTGGGGTGCCAAAGTaGGGACCTGGGGGCAGAGGA | + |
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Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQPGVPK*GPGGRG Trigger: TCCTCTGCCCCCAGGTCCCCACTTTGGCACCCCAGG...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR TCA 90 bp | AAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGGGAGAGCCCAGAGCAGTaGCGGGAACAGAGGGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: KLQVLLSTSLALAHSIPRESPEQ*REQRER Trigger: CCTTTCCCTCTGTTCCCGTCACTGCTCTGGGCTCTC...CCTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR GCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGGCCTGGCCCTCAGGCTaGAAAGTCTCCACGCCAACT | + |
|
Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQAWPSG*KVSTPT Trigger: AGTTGGCGTGGAGACTTTGCAGCCTGAGGGCCAGGC...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR GCA 90 bp | AAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGGCTGAGGTCCACAGTATaGCATCCCTCCGCAGAACTC | + |
|
Preference number: 4 (lower is better) Translates to: KLQVLLSTSLALAHSIPRLRSTV*HPSAEL Trigger: GAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAG...CCTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR TCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGAGAGGAGGTTCCCTCTaGGTTGCTTTCCACTCGTGC | + |
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Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQRGGSL*VAFHSC Trigger: GCACGAGTGGAAAGCAACTCAGAGGGAACCTCCTCT...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR GCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGTTCTTAAGGCTGAGCTaGAAGGCCTCGAAGCGACAG | + |
|
Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQFLRLS*KASKRQ Trigger: CTGTCGCTTCGAGGCCTTGCAGCTCAGCCTTAAGAA...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR CCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGGGCACTTCAGAAACATaGTCTCCAGACTCCACCTCA | + |
|
Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQGTSET*SPDSTS Trigger: TGAGGTGGAGTCTGGAGACCATGTTTCTGAAGTGCC...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR GCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGCCAGGGTCTCCGATTTaGATATCTCCTGAAGGTTCT | + |
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Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQPGSPI*ISPEGS Trigger: AGAACCTTCAGGAGATATGCAAATCGGAGACCCTGG...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR CCA 90 bp | TTTAATCCCTCCTCAGTAAAAGAATTTAACCCCAAAGCTCCAGGTTCTCTTGTCACTCGTGCTCCTGCCTaGCCCTCAGGCTGCAAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: FNPSSVKEFNPKAPGSLVTRAPA*PSGCKV Trigger: GACTTTGCAGCCTGAGGGCCAGGCAGGAGCACGAGT...GACAAGAGAACCTGGAGCTTTGGGGTTAAATTCTTTTACTGAGGAGGGATTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR CCA 90 bp | AAAGCTCCAGGTTCTCTTGTCTACCTCCCTTGCCTTGGCTCACAGCATCCCCAGTCATACTCTTCTCGTTaGGAATACTCAATACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: KAPGSLVYLPCLGSQHPQSYSSR*EYSILD Trigger: ATCAAGTATTGAGTATTCCCAACGAGAAGAGTATGA...CTGGGGATGCTGTGAGCCAAGGCAAGGGAGGTAGACAAGAGAACCTGGAGCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS TCA 90 bp | TGCAAAGTCTCCACGCCAACTTGGGGGACTAGGCCCAGTCCAACCTaGGGTCCACAGTATGCCATCCCTCCGCAGAACTCGTATGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: CKVSTPTWGTRPSPT*GPQYAIPPQNSYAG Trigger: GCCCGCATACGAGTTCTGCGGAGGGATGGCATACTGTGGACCTCAGGTTGGACTGGGCCTAGTCCCCCAAGTTGGCGTGGAGACTTTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS-3UTR CAA 90 bp | TTTAATCCCTCCTCAGTAAAAGAATTTAACCCCAAAGCTCCAGGTTCTCTTGTCGGGAATACTCAATACTaGATCTTTTGCCCTTCTGGC | + |
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Preference number: 5 (lower is better) Translates to: FNPSSVKEFNPKAPGSLVGNTQY*IFCPSG Trigger: GCCAGAAGGGCAAAAGATCAAGTATTGAGTATTCCC...GACAAGAGAACCTGGAGCTTTGGGGTTAAATTCTTTTACTGAGGAGGGATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS TCA 72 bp | GGGGCGGTCGGCACAGGGCTCAGAGGAGGTTCCCTCTaGGTTGCTTTCCACTCGTGCTCCTGCCTGGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: GAVGTGLRGGSL*VAFHSCSCLAL Trigger: GAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS TCA 72 bp | GTATGCGGGCGGACATGGGGAGATCCCCAATACCTCTaGGCCTGGTCCGATTCCAGGCCCACCTGGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: VCGRTWGDPQYL*AWSDSRPTWRP Trigger: GGGCCTCCAGGTGGGCCTGGAATCGGACCAGGCTCAGAGGTATTGGGGATCTCCCCATGTCCGCCCGCATAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS CAA 72 bp | CGGTCGGCACAGGGCTCAGAGGAGGTTCCCTCTGAGTaGCTTTCCACTCGTGCTCCTGCCTGGCCCTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: RSAQGSEEVPSE*LSTRAPAWPSG Trigger: GCCTGAGGGCCAGGCAGGAGCACGAGTGGAAAGCAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS CAA 72 bp | TCGGGAGTTGGTTCCACCTTCTCCAACTTCACGGCATaGGGGCGGTCGGCACAGGGCTCAGAGGAGGTTCCC | + |
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Preference number: 6 (lower is better) Translates to: SGVGSTFSNFTA*GRSAQGSEEVP Trigger: GGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGGAACCAACTCCCGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS CAA 90 bp | TGGGACTCCTCGGGAGTTGGTTCCACCTTCTCCAACTTCACGGCATaGGGGCGGTCGGCACAGGGCTCAGAGGAGGTTCCCTCTGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: WDSSGVGSTFSNFTA*GRSAQGSEEVPSEL Trigger: CAACTCAGAGGGAACCTCCTCTGAGCCCTGTGCCGACCGCCCCAATGCCGTGAAGTTGGAGAAGGTGGAACCAACTCCCGAGGAGTCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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| CDS TCA 72 bp | AACAGAGGGAAAGGCCTCGCCCTCAGGAAAAGGGACTaGGTAGAGTGTGGTGAAGTGGGGGCTTCCATAGCC | + |
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Preference number: 6 (lower is better) Translates to: NRGKGLALRKRD*VECGEVGASIA Trigger: GGCTATGGAAGCCCCCACTTCACCACACTCTACTCAGTCCCTTTTCCTGAGGGCGAGGCCTTTCCCTCTGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025271.17 |
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