Pregenerated sensors for POTEGL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026774Ensembl transcript IDs: ENSMUST00000028113.10, ENSMUST00000114505.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAACATCGTCCCTAAGACCCTaGTCATGTTCTTTGAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: ASILTRSRIPLCMRAAPTSSLRP*SCSLRP Trigger: AGGCCTCAAAGAACATGATCAGGGTCTTAGGGACGA...TGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| 3UTR-3UTR TCA 90 bp | TATATGTGGGTTTGTTTTCCACTTTATGAAACTAAGCCTGAAGGACTAAAGTACGGGCAGCACCAACATTaGAAGAGTTCTTTAAAATAT | + |
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Preference number: 2 (lower is better) Translates to: YMWVCFPLYETKPEGLKYGQHQH*KSSLKY Trigger: ATATTTTAAAGAACTCTTTCAATGTTGGTGCTGCCC...GTACTTTAGTCCTTCAGGCTTAGTTTCATAAAGTGGAAAACAAACCCACATATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| 3UTR GCA 72 bp | ACAGCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTaGATGAGGGCAGCACCAACATTGAAAGAGTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: TASILTRSRIPL*MRAAPTLKEFF Trigger: AAAGAACTCTTTCAATGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| 3UTR TCA 72 bp | AGGAAAGTAAATATGTGGGTTCACAATACAACTCTATaGGTTTCCTCCAATGATTTAGGCAGTTGCAGAACT | + |
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Preference number: 3 (lower is better) Translates to: RKVNMWVHNTTL*VSSNDLGSCRT Trigger: AGTTCTGCAACTGCCTAAATCATTGGAGGAAACTCATAGAGTTGTATTGTGAACCCACATATTTACTTTCCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR CCA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCCAGCGCAGAGAAGCCTaGAAACCCCAAAGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPQRREA*KPQRPP Trigger: AGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTG...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR TCA 90 bp | ACAGCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAAGAATTTCTTCTCTGTaGGTCAACTGCATGCACGCT | + |
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Preference number: 4 (lower is better) Translates to: TASILTRSRIPLCMRAAPRISSL*VNCMHA Trigger: AGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCT...TGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CCA 90 bp | ACAGCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAGAGAGCAAGCAAGAGTaGTGTGAGGTTGTCTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: TASILTRSRIPLCMRAAPESKQE*CEVVFC Trigger: ACAAAAGACAACCTCACACCACTCTTGCTTGCTCTC...TGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR TCA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCTCCCTATTTGTTTTCTaGCAGCAACACAGCGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPSLFVF*QQHSAE Trigger: CTCTGCGCTGTGTTGCTGTCAGAAAACAAATAGGGA...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR GCA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCTGTGAGTCAACTGCATaGACGCTTGCTTCCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPCESTA*TLASIL Trigger: AAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACA...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR CCA 90 bp | AGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAACATTGAAAGAGTTCTTTAGCAGGCAAAGTGCATaGCATTCCTATTCTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: RSRIPLCMRAAPTLKEFFSRQSA*HSYSPC Trigger: ACAGGGAGAATAGGAATGCCATGCACTTTGCCTGCT...AAAGAACTCTTTCAATGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR TCA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCAGAATTTCTTCTCTGTaGGTCAACTGCATGCACGCT | + |
|
Preference number: 4 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPRISSL*VNCMHA Trigger: AGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCT...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR TCA 90 bp | ACAGCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAACCTTACAGCATACATaGGAGAATTTCTTCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TASILTRSRIPLCMRAAPTLQHT*ENFFSV Trigger: CACAGAGAAGAAATTCTCTCATGTATGCTGTAAGGT...TGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR TCA 90 bp | GCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAACAGTTGATAAGCCTGATTaGAGAGTTTTCAGAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: ASILTRSRIPLCMRAAPTVDKPD*RVFRTL Trigger: CAGAGTTCTGAAAACTCTTCAATCAGGCTTATCAAC...TGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR GCA 90 bp | TCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCAATGTTCAGATTCTGGTCTaGGGGTTTGTGTCTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SSNDLGSCRTFFCLLYPNVQILV*GFVSSP Trigger: TGGAGAAGACACAAACCCGCAGACCAGAATCTGAAC...ATTGGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR CCA 90 bp | ATAACTATATCTTTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCACAGCGCAGAGAAGCCTaGAAACCCCAAAGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: ITISFLFQLFMVANFMLSQRREA*KPQRPP Trigger: AGGAGGCCTTTGGGGTTTCCAGGCTTCTCTGCGCTG...TGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAAAGATATAGTTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CCA 90 bp | ATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAACATTGAAAATGTGCAGGTTAGCATaGTGCTCTAGCAGAAAACAC | + |
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Preference number: 4 (lower is better) Translates to: ILTRSRIPLCMRAAPTLKMCRLA*CSSRKH Trigger: GTGTTTTCTGCTAGAGCACCATGCTAACCTGCACAT...TTTCAATGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CCA 90 bp | TTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCAGGAGTCATGATAGGCTTCGATTTTCAGTaGCAGCATCTGTCTTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: FLFQLFMVANFMLSGVMIGFDFQ*QHLSLH Trigger: GTGCAAAGACAGATGCTGCCACTGAAAATCGAAGCC...TATCATGACTCCTGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR TCA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCGAGTTTTCAGAACTCTaGAATGCTCGATTTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPEFSEL*NARFLF Trigger: AAAGAGAAATCGAGCATTTCAGAGTTCTGAAAACTC...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR TCA 90 bp | TCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCAATGTTGATAAGCCTGATTaGAGAGTTTTCAGAACTCTG | + |
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Preference number: 4 (lower is better) Translates to: SSNDLGSCRTFFCLLYPNVDKPD*RVFRTL Trigger: CAGAGTTCTGAAAACTCTTCAATCAGGCTTATCAAC...ATTGGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR TCA 90 bp | GAGTTCTTTAAAATATTTCTTTCATCACAGATCGTCCCTAAGACCCTGATCATGTCCCTATTTGTTTTCTaGCAGCAACACAGCGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: EFFKIFLSSQIVPKTLIMSLFVF*QQHSAE Trigger: CTCTGCGCTGTGTTGCTGTCAGAAAACAAATAGGGA...CATGATCAGGGTCTTAGGGACGATCTGTGATGAAAGAAATATTTTAAAGAACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR GCA 90 bp | ATAACTATATCTTTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCACAGATTCTGCTGGTCTaGGGGTTTGTGTCTTCTCCA | + |
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Preference number: 4 (lower is better) Translates to: ITISFLFQLFMVANFMLSQILLV*GFVSSP Trigger: TGGAGAAGACACAAACCCGCAGACCAGCAGAATCTG...TGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAAAGATATAGTTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CCA 90 bp | CTCCTGTACCCCAATGTAGACTTGGTAAATTATGAATTCTCTGGAATTAGAACTAGCAGGCAAAGTGCATaGCATTCCTATTCTCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: LLYPNVDLVNYEFSGIRTSRQSA*HSYSPC Trigger: ACAGGGAGAATAGGAATGCCATGCACTTTGCCTGCT...AGTTCTAATTCCAGAGAATTCATAATTTACCAAGTCTACATTGGGGTACAGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR GCA 90 bp | ATAACTATATCTTTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCATGTGAGTCAACTGCATaGACGCTTGCTTCCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: ITISFLFQLFMVANFMLSCESTA*TLASIL Trigger: AAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACA...TGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAAAGATATAGTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR GCA 90 bp | TTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCAGGAGTCATGATACGTTGTCCTGGGTTCTaGTGTAGATTATTTATAGTC | + |
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Preference number: 4 (lower is better) Translates to: FLFQLFMVANFMLSGVMIRCPGF*CRLFIV Trigger: GACTATAAATAATCTACAGCAGAACCCAGGACAACG...TATCATGACTCCTGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR TCA 90 bp | TTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCAGGAGTCATGATAGAGTTTTCAGAACTCTaGAATGCTCGATTTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: FLFQLFMVANFMLSGVMIEFSEL*NARFLF Trigger: AAAGAGAAATCGAGCATTTCAGAGTTCTGAAAACTC...TATCATGACTCCTGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR GCA 90 bp | CTCCTGTACCCCAATGTAGACTTGGTAAATTATGAATTCTCTGGAATTAGAACTGTTGTAAAAGGGTCTTaGATTTCAATCACTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LLYPNVDLVNYEFSGIRTVVKGS*ISITFS Trigger: TGAGAAAGTGATTGAAATGCAAGACCCTTTTACAAC...AGTTCTAATTCCAGAGAATTCATAATTTACCAAGTCTACATTGGGGTACAGGAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR GCA 90 bp | TATATGTGGGTTTGTTTTCCACTTTATGAAACTAAGCCTGAAGGACTAAAGTACGTTGTAAAAGGGTCTTaGATTTCAATCACTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: YMWVCFPLYETKPEGLKYVVKGS*ISITFS Trigger: TGAGAAAGTGATTGAAATGCAAGACCCTTTTACAAC...GTACTTTAGTCCTTCAGGCTTAGTTTCATAAAGTGGAAAACAAACCCACATATA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CAA 90 bp | ACAGCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCATTTATCTTCCCAGCTTaGGACAGCCTTCATCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: TASILTRSRIPLCMRAAPFIFPA*DSLHQG Trigger: CCCCTGATGAAGGCTGTCCAAAGCTGGGAAGATAAA...TGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CAA 90 bp | ACAGCCAGTATTCTTACAAGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCACAACTGCATGCACGCTaGCTTCCATCCTTACTAAGA | + |
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Preference number: 5 (lower is better) Translates to: TASILTRSRIPLCMRAAPQLHAR*LPSLLR Trigger: TCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTG...TGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCTTGTAAGAATACTGGCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CCA 90 bp | GAATTGTGCCATCTTCAGTCTGTTCTCCCTGAGAGCAAGCAAGAGTaGTGTGAGGTTGTCCTTCATCAGGGGTGTGATGTTATGATTGTC | + |
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Preference number: 5 (lower is better) Translates to: ELCHLQSVLPESKQE*CEVVLHQGCDVMIV Trigger: GACAATCATAACATCACACCCCTGATGAAGGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATGGCACAATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS CCA 90 bp | GAATTGTGCCATCTTCAGTCTGTTCTCCCTGAGAGCAAGCAAGAGTaGTGTGAGGTTGTCTTTTGTCCTTTCCTCAATATCTGCTCCGTA | + |
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Preference number: 5 (lower is better) Translates to: ELCHLQSVLPESKQE*CEVVFCPFLNICSV Trigger: TACGGAGCAGATATTGAGGAAAGGACAAAAGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATGGCACAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CCA 90 bp | TGCAGAGCAGTGTTACCCATGCTGTCTTTAATGTGCAGGTTAGCATaGTGCTCTAGCAGAAAACACACGATTTTATCTTCCCAGCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: CRAVLPMLSLMCRLA*CSSRKHTILSSQLW Trigger: CCAAAGCTGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTAACACTGCTCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CAA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCGGGTCTCTTCCCTATTaGTTTTCTGACAGCAACACA | + |
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Preference number: 5 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPGSLPY*FSDSNT Trigger: TGTGTTGCTGTCAGAAAACAAATAGGGAAGAGACCC...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR CAA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCTCAGCATCAGCTTTGTaGATAAGCCTGATTGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPSASAL*ISLIEE Trigger: CTCTTCAATCAGGCTTATCAACAAAGCTGATGCTGA...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS-3UTR CAA 90 bp | AGGTCCAGAATTCCTCTCTGCATGAGGGCAGCACCAACATTGAAAGAGTTCTTTGGTTGTAAAAGGGTCTaGCATTTCAATCACTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: RSRIPLCMRAAPTLKEFFGCKRV*HFNHFL Trigger: GAGAAAGTGATTGAAATGCAAGACCCTTTTACAACC...AAAGAACTCTTTCAATGTTGGTGCTGCCCTCATGCAGAGAGGAATTCTGGACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CAA 90 bp | GTTTCCTCCAATGATTTAGGCAGTTGCAGAACTTTCTTCTGTCTCCTGTACCCCGGTTGTAAAAGGGTCTaGCATTTCAATCACTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: VSSNDLGSCRTFFCLLYPGCKRV*HFNHFL Trigger: GAGAAAGTGATTGAAATGCAAGACCCTTTTACAACC...GGGGTACAGGAGACAGAAGAAAGTTCTGCAACTGCCTAAATCATTGGAGGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS GCA 90 bp | CTTACAGCATACATGAGAGAATTTCTTCTCTGTGAGTCAACTGCATaGACGCTTGCTTCCATCCTTACTAAGAATTGTGCCATCTTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LTAYMREFLLCESTA*TLASILTKNCAIFS Trigger: ACTGAAGATGGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCTCTCATGTATGCTGTAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS-3UTR CAA 90 bp | TTTCTCTTTCAGCTGTTCATGGTAGCCAACTTCATGCTTTCAGGAGTCATGATAAAGAGTGGTGTGAGGTaGTCTTTTGTCCTTTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: FLFQLFMVANFMLSGVMIKSGVR*SFVLSS Trigger: TGAGGAAAGGACAAAAGACAACCTCACACCACTCTT...TATCATGACTCCTGAAAGCATGAAGTTGGCTACCATGAACAGCTGAAAGAGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CAA 90 bp | GAGTTCTTTAAAATATTTCTTTCATCACAGATCGTCCCTAAGACCCTGATCATGGGGTCTCTTCCCTATTaGTTTTCTGACAGCAACACA | + |
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Preference number: 5 (lower is better) Translates to: EFFKIFLSSQIVPKTLIMGSLPY*FSDSNT Trigger: TGTGTTGCTGTCAGAAAACAAATAGGGAAGAGACCC...CATGATCAGGGTCTTAGGGACGATCTGTGATGAAAGAAATATTTTAAAGAACTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS-3UTR CAA 90 bp | GAGTTCTTTAAAATATTTCTTTCATCACAGATCGTCCCTAAGACCCTGATCATGTCAGCATCAGCTTTGTaGATAAGCCTGATTGAAGAG | + |
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Preference number: 5 (lower is better) Translates to: EFFKIFLSSQIVPKTLIMSASAL*ISLIEE Trigger: CTCTTCAATCAGGCTTATCAACAAAGCTGATGCTGA...CATGATCAGGGTCTTAGGGACGATCTGTGATGAAAGAAATATTTTAAAGAACTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS TCA 72 bp | CAGAAACCCAAGGGGGTCTCTTCCCTATTTGTTTTCTaGCAGCAACACAGCGCAGAGAAGCCTGGAAACCCC | + |
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Preference number: 6 (lower is better) Translates to: QKPKGVSSLFVF*QQHSAEKPGNP Trigger: GGGGTTTCCAGGCTTCTCTGCGCTGTGTTGCTGTCAGAAAACAAATAGGGAAGAGACCCCCTTGGGTTTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS CCA 72 bp | CATCTTCAGTCTGTTCTCCCTGAGAGCAAGCAAGAGTaGTGTGAGGTTGTCCTTCATCAGGGGTGTGATGTT | + |
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Preference number: 6 (lower is better) Translates to: HLQSVLPESKQE*CEVVLHQGCDV Trigger: AACATCACACCCCTGATGAAGGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS GCA 72 bp | CTAATGAGAACACCTCTAGTTCAGATTCTGCTGGTCTaGGGGTTTGTGTCTTCTCCACGCTTGCTTCATTGG | + |
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Preference number: 6 (lower is better) Translates to: LMRTPLVQILLV*GFVSSPRLLHW Trigger: CCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGCAGAATCTGAACTAGAGGTGTTCTCATTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CAA 72 bp | CTGTTCTCCCTGAGAGCAAGCAAGAGTGGTGTGAGGTaGTCTTTTGTCCTTTCCTCAATATCTGCTCCGTAC | + |
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Preference number: 6 (lower is better) Translates to: LFSLRASKSGVR*SFVLSSISAPY Trigger: GTACGGAGCAGATATTGAGGAAAGGACAAAAGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CAA 90 bp | ATCTTCAGTCTGTTCTCCCTGAGAGCAAGCAAGAGTGGTGTGAGGTaGTCTTTTGTCCTTTCCTCAATATCTGCTCCGTACTGTAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: IFSLFSLRASKSGVR*SFVLSSISAPYCSS Trigger: GCTGCTACAGTACGGAGCAGATATTGAGGAAAGGACAAAAGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS TCA 72 bp | CAGCTTTGGACAGCCTTCATCAGGGGTGTGATGTTATaGTTGTCACACACATTAATCTCACAACCACGCCTC | + |
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Preference number: 6 (lower is better) Translates to: QLWTAFIRGVML*LSHTLISQPRL Trigger: GAGGCGTGGTTGTGAGATTAATGTGTGTGACAATCATAACATCACACCCCTGATGAAGGCTGTCCAAAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CAA 90 bp | GATTCTGCTGGTCTGCGGGTTTGTGTCTTCTCCACGCTTGCTTCATaGGTTGTAAAAGGGTCTTGCATTTCAATCACTTTCTCATTTGCC | + |
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Preference number: 6 (lower is better) Translates to: DSAGLRVCVFSTLAS*VVKGSCISITFSFA Trigger: GGCAAATGAGAAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGCAGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS GCA 72 bp | TTCTGCTGGTCTGCGGGTTTGTGTCTTCTCCACGCTTaGTTCATTGGTTGTAAAAGGGTCTTGCATTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: FCWSAGLCLLHA*FIGCKRVLHFN Trigger: ATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CCA 72 bp | CATCTTCAGTCTGTTCTCCCTGAGAGCAAGCAAGAGTaGTGTGAGGTTGTCTTTTGTCCTTTCCTCAATATC | + |
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Preference number: 6 (lower is better) Translates to: HLQSVLPESKQE*CEVVFCPFLNI Trigger: GATATTGAGGAAAGGACAAAAGACAACCTCACACCACTCTTGCTTGCTCTCAGGGAGAACAGACTGAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS CAA 72 bp | GGTCTGCGGGTTTGTGTCTTCTCCACGCTTGCTTCATaGGTTGTAAAAGGGTCTTGCATTTCAATCACTTTC | + |
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Preference number: 6 (lower is better) Translates to: GLRVCVFSTLAS*VVKGSCISITF Trigger: GAAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS CAA 90 bp | TCAGATTCTGGTCTGCGGGTTTGTGTCTTCTCCACGCTTGCTTCATaGGTTGTAAAAGGGTCTTGCATTTCAATCACTTTCTCATTTGCC | + |
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Preference number: 6 (lower is better) Translates to: SDSGLRVCVFSTLAS*VVKGSCISITFSFA Trigger: GGCAAATGAGAAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGAATCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS TCA 72 bp | ACACCTTACAGCATACATGAGAGAATTTCTTCTCTGTaGGTCAACTGCATGCACGCTTGCTTCCATCCTTAC | + |
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Preference number: 6 (lower is better) Translates to: TPYSIHERISSL*VNCMHACFHPY Trigger: GTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCTCTCATGTATGCTGTAAGGTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS GCA 72 bp | AGATTCTGGTCTGCGGGTTTGTGTCTTCTCCACGCTTaGTTCATTGGTTGTAAAAGGGTCTTGCATTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: RFWSAGLCLLHA*FIGCKRVLHFN Trigger: ATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAGAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114505.2 |
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| CDS TCA 72 bp | GTCTTGCATTTCAATCACTTTCTCATTTGCCGTAGGTaGGGTCACTTCAGCATCAGCTTTGTTGATAAGCCT | + |
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Preference number: 6 (lower is better) Translates to: VLHFNHFLICRR*GHFSISFVDKP Trigger: AGGCTTATCAACAAAGCTGATGCTGAAGTGACCTCACCTACGGCAAATGAGAAAGTGATTGAAATGCAAGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS GCA 72 bp | TTACCCATGCTGTCTTTAATGTGCAGGTTAGCATGGTaGTCTAGCAGAAAACACACGATTTTATCTTCCCAG | + |
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Preference number: 6 (lower is better) Translates to: LPMLSLMCRLAW*SSRKHTILSSQ Trigger: CTGGGAAGATAAAATCGTGTGTTTTCTGCTAGAGCACCATGCTAACCTGCACATTAAAGACAGCATGGGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028113.10 |
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| CDS GCA 72 bp | TACATGAGAGAATTTCTTCTCTGTGAGTCAACTGCATaGACGCTTGCTTCCATCCTTACTAAGAATTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: YMREFLLCESTA*TLASILTKNCA Trigger: GGCACAATTCTTAGTAAGGATGGAAGCAAGCGTGCATGCAGTTGACTCACAGAGAAGAAATTCTCTCATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS GCA 72 bp | TTCTCCACGCTTGCTTCATTGGTTGTAAAAGGGTCTTaGATTTCAATCACTTTCTCATTTGCCGTAGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: FSTLASLVVKGS*ISITFSFAVGE Trigger: CTCACCTACGGCAAATGAGAAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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| CDS TCA 72 bp | CCAAATAAATCTTTCAAATTTATGTCGACACCTTGTTaGAGAATAAGGTTGACCATAACTGGTGAGTCACAC | + |
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Preference number: 6 (lower is better) Translates to: PNKSFKFMSTPC*RIRLTITGESH Trigger: GTGTGACTCACCAGTTATGGTCAACCTTATTCTTCAACAAGGTGTCGACATAAATTTGAAAGATTTATTTGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028113.10 ENSMUST00000114505.2 |
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