Pregenerated sensors for POTEG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063932Ensembl transcript IDs: ENSMUST00000081321.5
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTACACGTTGCATTGTCCAAGCGTGAGGAGAATCTCCATCCGGGCTaGATCACCCTCAGCAGCAACCCTGTGAATATGCCCCAACGGTCT | + |
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Preference number: 5 (lower is better) Translates to: VHVALSKREENLHPG*ITLSSNPVNMPQRS Trigger: AGACCGTTGGGGCATATTCACAGGGTTGCTGCTGAGGGTGATGCAGCCCGGATGGAGATTCTCCTCACGCTTGGACAATGCAACGTGTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS TCA 90 bp | AGTTCTTTTTCCTCTATTTCCAAATGCTTTGTCTATAGCCGCCGGTaGATTGCCAGCACAGTTAGGAGGCTTGCTCTCCGAGTTACTCCT | + |
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Preference number: 5 (lower is better) Translates to: SSFSSISKCFVYSRR*IASTVRRLALRVTP Trigger: AGGAGTAACTCGGAGAGCAAGCCTCCTAACTGTGCTGGCAATTCACCGGCGGCTATAGACAAAGCATTTGGAAATAGAGGAAAAAGAACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 90 bp | TCCTTGCTAGTGAGTCATTTCCAGCATCTATTTGTTTTGCTAAAATaGAGGAGGTACTGGGCTCCACTTGTAGTTCTGGTTCCTTATCTT | + |
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Preference number: 5 (lower is better) Translates to: SLLVSHFQHLFVLLK*RRYWAPLVVLVPYL Trigger: AAGATAAGGAACCAGAACTACAAGTGGAGCCCAGTACCTCCTGCATTTTAGCAAAACAAATAGATGCTGGAAATGACTCACTAGCAAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 90 bp | AGATCTTTTGATCCACATCTTATAGCGTATATCAAGGTGTTTCTTTaGAGCTCATCTACCACGTGTATGTCTGCTCCCATTCTTACTAAA | + |
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Preference number: 5 (lower is better) Translates to: RSFDPHLIAYIKVFL*SSSTTCMSAPILTK Trigger: TTTAGTAAGAATGGGAGCAGACATACACGTGGTAGATGAGCTGCAAAGAAACACCTTGATATACGCTATAAGATGTGGATCAAAAGATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 72 bp | GCATTGTCCAAGCGTGAGGAGAATCTCCATCCGGGCTaGATCACCCTCAGCAGCAACCCTGTGAATATGCCC | + |
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Preference number: 6 (lower is better) Translates to: ALSKREENLHPG*ITLSSNPVNMP Trigger: GGGCATATTCACAGGGTTGCTGCTGAGGGTGATGCAGCCCGGATGGAGATTCTCCTCACGCTTGGACAATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 72 bp | TCAGCGCCGTGCTCCAGCAGCACGGTCGCACATTTCTaGTTCCAGCATTGGACAGACTTCATCAGAGGTGTG | + |
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Preference number: 6 (lower is better) Translates to: SAPCSSSTVAHF*FQHWTDFIRGV Trigger: CACACCTCTGATGAAGTCTGTCCAATGCTGGAAGCAGAAATGTGCGACCGTGCTGCTGGAGCACGGCGCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | TGTCCTGTCCTTGCGGTCTCTGTGGTACACGTTGCATaGTCCAAGCGTGAGGAGAATCTCCATCCGGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: CPVLAVSVVHVA*SKREENLHPGC Trigger: GCAGCCCGGATGGAGATTCTCCTCACGCTTGGACAATGCAACGTGTACCACAGAGACCGCAAGGACAGGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 90 bp | AGCGCCGTGCTCCAGCAGCACGGTCGCACATTTCTGCTTCCAGCATaGGACAGACTTCATCAGAGGTGTGGTATGGTTCTTGTCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: SAVLQQHGRTFLLPA*DRLHQRCGMVLVQG Trigger: GCCTTGGACAAGAACCATACCACACCTCTGATGAAGTCTGTCCAATGCTGGAAGCAGAAATGTGCGACCGTGCTGCTGGAGCACGGCGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | ATAGCCGCCGGTGAATTGCCAGCACAGTTAGGAGGCTaGCTCTCCGAGTTACTCCTGGCATCACTGTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: IAAGELPAQLGG*LSELLLASLFS Trigger: CGAGAACAGTGATGCCAGGAGTAACTCGGAGAGCAAGCCTCCTAACTGTGCTGGCAATTCACCGGCGGCTAT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | AAAGCTGTCCTGTCCTTGCGGTCTCTGTGGTACACGTaGCATTGTCCAAGCGTGAGGAGAATCTCCATCCGG | + |
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Preference number: 6 (lower is better) Translates to: KAVLSLRSLWYT*HCPSVRRISIR Trigger: CCGGATGGAGATTCTCCTCACGCTTGGACAATGCAACGTGTACCACAGAGACCGCAAGGACAGGACAGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS TCA 72 bp | TCCATCCGGGCTGCATCACCCTCAGCAGCAACCCTGTaGATATGCCCCAACGGTCTGTATGTTGTATGGTAT | + |
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Preference number: 6 (lower is better) Translates to: SIRAASPSAATL*ICPNGLYVVWY Trigger: ATACCATACAACATACAGACCGTTGGGGCATATTCACAGGGTTGCTGCTGAGGGTGATGCAGCCCGGATGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 72 bp | CATAGACACAGGCAAAGTGCAAAGCTGTCCTGTCCTTaGGGTCTCTGTGGTACACGTTGCATTGTCCAAGCG | + |
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Preference number: 6 (lower is better) Translates to: HRHRQSAKLSCP*GLCGTRCIVQA Trigger: CGCTTGGACAATGCAACGTGTACCACAGAGACCGCAAGGACAGGACAGCTTTGCACTTTGCCTGTGTCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CCA 72 bp | TCCAGCAGCACGGTCGCACATTTCTGCTTCCAGCATTaGACAGACTTCATCAGAGGTGTGGTATGGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: SSSTVAHFCFQH*TDFIRGVVWFL Trigger: CAAGAACCATACCACACCTCTGATGAAGTCTGTCCAATGCTGGAAGCAGAAATGTGCGACCGTGCTGCTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | CTCCAGCAGCACGGTCGCACATTTCTGCTTCCAGCATaGGACAGACTTCATCAGAGGTGTGGTATGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LQQHGRTFLLPA*DRLHQRCGMVL Trigger: AAGAACCATACCACACCTCTGATGAAGTCTGTCCAATGCTGGAAGCAGAAATGTGCGACCGTGCTGCTGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 90 bp | CTTTTTCCTCTATTTCCAAATGCTTTGTCTATAGCCGCCGGTGAATaGCCAGCACAGTTAGGAGGCTTGCTCTCCGAGTTACTCCTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LFPLFPNALSIAAGE*PAQLGGLLSELLLA Trigger: TGCCAGGAGTAACTCGGAGAGCAAGCCTCCTAACTGTGCTGGCAATTCACCGGCGGCTATAGACAAAGCATTTGGAAATAGAGGAAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CCA 72 bp | CCAAGGCATCGATCTCACAATTATTCTTCACTAGAATaGTCACTACTGGTAGCCGGCCATAGACACAGGCAA | + |
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Preference number: 6 (lower is better) Translates to: PRHRSHNYSSLE*SLLVAGHRHRQ Trigger: TTGCCTGTGTCTATGGCCGGCTACCAGTAGTGACCATTCTAGTGAAGAATAATTGTGAGATCGATGCCTTGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CCA 72 bp | TCTGCTTCCAGCATTGGACAGACTTCATCAGAGGTGTaGTATGGTTCTTGTCCAAGGCATCGATCTCACAAT | + |
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Preference number: 6 (lower is better) Translates to: SASSIGQTSSEV*YGSCPRHRSHN Trigger: ATTGTGAGATCGATGCCTTGGACAAGAACCATACCACACCTCTGATGAAGTCTGTCCAATGCTGGAAGCAGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 72 bp | GAACGAGATGAATGGCCAACCTTGATCTTTGGAAGATaGTCCGATTCTCTCAAAGGGTGGTCATTTTCACTT | + |
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Preference number: 6 (lower is better) Translates to: ERDEWPTLIFGR*SDSLKGWSFSL Trigger: AAGTGAAAATGACCACCCTTTGAGAGAATCGGAGCATCTTCCAAAGATCAAGGTTGGCCATTCATCTCGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CCA 72 bp | TTCCAGCATTGGACAGACTTCATCAGAGGTGTGGTATaGTTCTTGTCCAAGGCATCGATCTCACAATTATTC | + |
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Preference number: 6 (lower is better) Translates to: FQHWTDFIRGVV*FLSKASISQLF Trigger: GAATAATTGTGAGATCGATGCCTTGGACAAGAACCATACCACACCTCTGATGAAGTCTGTCCAATGCTGGAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS GCA 72 bp | GTGAGTCATTTCCAGCATCTATTTGTTTTGCTAAAATaGAGGAGGTACTGGGCTCCACTTGTAGTTCTGGTT | + |
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Preference number: 6 (lower is better) Translates to: VSHFQHLFVLLK*RRYWAPLVVLV Trigger: AACCAGAACTACAAGTGGAGCCCAGTACCTCCTGCATTTTAGCAAAACAAATAGATGCTGGAAATGACTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | CATTGGACAGACTTCATCAGAGGTGTGGTATGGTTCTaGTCCAAGGCATCGATCTCACAATTATTCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: HWTDFIRGVVWF*SKASISQLFFT Trigger: AGTGAAGAATAATTGTGAGATCGATGCCTTGGACAAGAACCATACCACACCTCTGATGAAGTCTGTCCAATG 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 90 bp | CAGGAGGTACTGGGCTCCACTTGTAGTTCTGGTTCCTTATCTTTTTaGTTACTATGTAGACTTTCTTCAAAATCCAGAAGTGTCTGTCTA | + |
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Preference number: 6 (lower is better) Translates to: QEVLGSTCSSGSLSF*LLCRLSSKSRSVCL Trigger: TAGACAGACACTTCTGGATTTTGAAGAAAGTCTACATAGTAACAAAAAAGATAAGGAACCAGAACTACAAGTGGAGCCCAGTACCTCCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CCA 72 bp | CAGCATCTATTTGTTTTGCTAAAATGCAGGAGGTACTaGGCTCCACTTGTAGTTCTGGTTCCTTATCTTTTT | + |
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Preference number: 6 (lower is better) Translates to: QHLFVLLKCRRY*APLVVLVPYLF Trigger: AAAAAGATAAGGAACCAGAACTACAAGTGGAGCCCAGTACCTCCTGCATTTTAGCAAAACAAATAGATGCTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | CCAACGGTCTGTATGTTGTATGGTATTTCGGATAGTTaGGATTTTCACCGAAGAAAAACTCAGAGACAGTCA | + |
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Preference number: 6 (lower is better) Translates to: PTVCMLYGISDS*DFHRRKTQRQS Trigger: TGACTGTCTCTGAGTTTTTCTTCGGTGAAAATCCAAACTATCCGAAATACCATACAACATACAGACCGTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CAA 72 bp | GACATCAATTCTAACTCTGTTTCTGAAGGCAACAGCTaGATCCTTTCCACTGCTTCATTTGTAACAGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: DINSNSVSEGNS*ILSTASFVTES Trigger: AGACTCTGTTACAAATGAAGCAGTGGAAAGGATCAAGCTGTTGCCTTCAGAAACAGAGTTAGAATTGATGTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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| CDS CCA 72 bp | CAACGGTCTGTATGTTGTATGGTATTTCGGATAGTTTaGATTTTCACCGAAGAAAAACTCAGAGACAGTCAT | + |
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Preference number: 6 (lower is better) Translates to: QRSVCCMVFRIV*IFTEEKLRDSH Trigger: ATGACTGTCTCTGAGTTTTTCTTCGGTGAAAATCCAAACTATCCGAAATACCATACAACATACAGACCGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000081321.5 |
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