Pregenerated sensors for POPDC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019848Ensembl transcript IDs: ENSMUST00000019994.14, ENSMUST00000161803.2, ENSMUST00000175658.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTACACCCTGTCGTTCAAGGCATAGAGTTTATCTGCAATGTCACTaGCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATGCTGCG | + |
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Preference number: 1 (lower is better) Translates to: CTPCRSRHRVYLQCH*QLKPKTGGRCTDAA Trigger: CGCAGCATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAACTCTATGCCTTGAACGACAGGGTGTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR CCA 90 bp | TACAATGTTGTCTGGAATTCCGGAACTGTTCTGTTAGGGGTGATCTaGACAAGTCTGGAGTTGACATATGGTAGTAGTTGGGTAACCGAA | + |
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Preference number: 1 (lower is better) Translates to: YNVVWNSGTVLLGVI*TSLELTYGSSWVTE Trigger: TTCGGTTACCCAACTACTACCATATGTCAACTCCAGACTTGTCCAGATCACCCCTAACAGAACAGTTCCGGAATTCCAGACAACATTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR CCA 90 bp | TTAGGGGTGATCTGGACAAGTCTGGAGTTGACATATGGTAGTAGTTaGGTAACCGAATATCATAGTGATGTTTCTTTCCTATGTACACCC | + |
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Preference number: 1 (lower is better) Translates to: LGVIWTSLELTYGSS*VTEYHSDVSFLCTP Trigger: GGGTGTACATAGGAAAGAAACATCACTATGATATTCGGTTACCCAACTACTACCATATGTCAACTCCAGACTTGTCCAGATCACCCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR CCA 90 bp | AGTCACACAACTTCAGGTTTTGATGTCATTTGTTACAATGTTGTCTaGAATTCCGGAACTGTTCTGTTAGGGGTGATCTGGACAAGTCTG | + |
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Preference number: 1 (lower is better) Translates to: SHTTSGFDVICYNVV*NSGTVLLGVIWTSL Trigger: CAGACTTGTCCAGATCACCCCTAACAGAACAGTTCCGGAATTCCAGACAACATTGTAACAAATGACATCAAAACCTGAAGTTGTGTGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR-3UTR TCA 90 bp | GTTTATCTGCAATGTCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGCTGTGAGAGTTACCTaGAAAATGCCTTCCTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: VYLQCHCQLKPKTGGRCTAVRVT*KMPSSV Trigger: CACAGAGGAAGGCATTTTTCAGGTAACTCTCACAGC...GGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR-3UTR CCA 90 bp | CTGGAATTCCGGAACTGTTCTGTTAGGGGTGATCTGGACAAGTCTGGAGTTGACGTAAACAGCTGGCAATaGCATCTTGATTCTGAATTG | + |
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Preference number: 2 (lower is better) Translates to: LEFRNCSVRGDLDKSGVDVNSWQ*HLDSEL Trigger: CAATTCAGAATCAAGATGCCATTGCCAGCTGTTTAC...GTCAACTCCAGACTTGTCCAGATCACCCCTAACAGAACAGTTCCGGAATTCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR CAA 90 bp | AATTCCGGAACTGTTCTGTTAGGGGTGATCTGGACAAGTCTGGAGTaGACATATGGTAGTAGTTGGGTAACCGAATATCATAGTGATGTT | + |
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Preference number: 2 (lower is better) Translates to: NSGTVLLGVIWTSLE*TYGSSWVTEYHSDV Trigger: AACATCACTATGATATTCGGTTACCCAACTACTACCATATGTCAACTCCAGACTTGTCCAGATCACCCCTAACAGAACAGTTCCGGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTGTCTGGAATTCCGGAACTGTTCTGTTAGGGGTGATCTGGACAAGTCTGGATATCTGCAATGTCACTaGCAATTAAAACCGAAAACA | + |
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Preference number: 2 (lower is better) Translates to: CCLEFRNCSVRGDLDKSGYLQCH*QLKPKT Trigger: TGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATA...TCCAGACTTGTCCAGATCACCCCTAACAGAACAGTTCCGGAATTCCAGACAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR-3UTR CCA 90 bp | AATGTTGTCTGGAATTCCGGAACTGTTCTGTTAGGGGTGATCTGGACAAGTCTGACATATGGTAGTAGTTaGGTAACCGAATATCATAGT | + |
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Preference number: 2 (lower is better) Translates to: NVVWNSGTVLLGVIWTSLTYGSS*VTEYHS Trigger: ACTATGATATTCGGTTACCCAACTACTACCATATGT...CAGACTTGTCCAGATCACCCCTAACAGAACAGTTCCGGAATTCCAGACAACATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR-3UTR TCA 90 bp | CACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAAAGCAGATTCAACCTGCTCTCATGCTaGCATTTGTTAGCTGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: HNNNVTYIHQRLSQKSRFNLLSC*HLLAAS Trigger: AGAAGCAGCTAACAAATGTCAGCATGAGAGCAGGTT...GAATCTGCTTTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR-3UTR CCA 90 bp | TGTTTAGTCCCGTCAAAGAACTTCACATATAAAAGAAATTGCTTCCCACAACAACTAGAAGTGGGTCTGTaGACCATAATAGCAACCTGC | + |
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Preference number: 2 (lower is better) Translates to: CLVPSKNFTYKRNCFPQQLEVGL*TIIATC Trigger: GCAGGTTGCTATTATGGTCCACAGACCCACTTCTAG...TTGTTGTGGGAAGCAATTTCTTTTATATGTGAAGTTCTTTGACGGGACTAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR-3UTR CCA 90 bp | CACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAAAGCAGATTCGTAAACAGCTGGCAATaGCATCTTGATTCTGAATTG | + |
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Preference number: 2 (lower is better) Translates to: HNNNVTYIHQRLSQKSRFVNSWQ*HLDSEL Trigger: CAATTCAGAATCAAGATGCCATTGCCAGCTGTTTAC...GAATCTGCTTTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR GCA 72 bp | CCTGCTCTCATGCTGACATTTGTTAGCTGCTTCTCCTaGGCCAACAGTACCAGGCAGCACATTGGGGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: PALMLTFVSCFS*ANSTRQHIGGN Trigger: ATTTCCCCCAATGTGCTGCCTGGTACTGTTGGCGCAGGAGAAGCAGCTAACAAATGTCAGCATGAGAGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR CCA 72 bp | CTGCTTCTCCTGCGCCAACAGTACCAGGCAGCACATTaGGGGAAATATCAGAGAATACGAAATCACATTCTC | + |
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Preference number: 3 (lower is better) Translates to: LLLLRQQYQAAH*GKYQRIRNHIL Trigger: GAGAATGTGATTTCGTATTCTCTGATATTTCCCCCAATGTGCTGCCTGGTACTGTTGGCGCAGGAGAAGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR-3UTR CAA 90 bp | GATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCATTATAACAGTAGCTGGCAATGGCATCTaGATTCTGAATTGTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: DAEKGQTAHPYSSPIITVAGNGI*ILNCLG Trigger: CCCCAGACAATTCAGAATCAAGATGCCATTGCCAGC...TACTGTTATAATGGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR-3UTR CAA 90 bp | AGTTTATCTGCAATGTCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACGCTGGCAATGGCATCTaGATTCTGAATTGTCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: SLSAMSLPIKTENRREMYAGNGI*ILNCLG Trigger: CCCCAGACAATTCAGAATCAAGATGCCATTGCCAGC...GTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR GCA 72 bp | TGTCGTTCAAGGCATAGAGTTTATCTGCAATGTCACTaGCAATTAAAACCGAAAACAGGCGGGAGATGTACC | + |
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Preference number: 3 (lower is better) Translates to: CRSRHRVYLQCH*QLKPKTGGRCT Trigger: GGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAACTCTATGCCTTGAACGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR-3UTR CAA 90 bp | AATCACATTCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTATGATGAAGTCTTTTTaGCAGCAGTCACACAACTTC | + |
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Preference number: 3 (lower is better) Translates to: NHILSVLMQKRGKLPIRIMMKSF*QQSHNF Trigger: GAAGTTGTGTGACTGCTGCAAAAAAGACTTCATCAT...AATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGAATGTGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR TCA 72 bp | AATATCAGAGAATACGAAATCACATTCTCTCAGTTCTaGTGCAGAAAAGGGGCAAACTGCCCATCCGTATTC | + |
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Preference number: 3 (lower is better) Translates to: NIREYEITFSQF*CRKGANCPSVF Trigger: GAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGAATGTGATTTCGTATTCTCTGATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR-3UTR CAA 90 bp | GTGATCTGGACAAGTCTGGAGTTGACATATGGTAGTAGTTGGGTAACCGAATATATGATGAAGTCTTTTTaGCAGCAGTCACACAACTTC | + |
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Preference number: 3 (lower is better) Translates to: VIWTSLELTYGSSWVTEYMMKSF*QQSHNF Trigger: GAAGTTGTGTGACTGCTGCAAAAAAGACTTCATCAT...ATATTCGGTTACCCAACTACTACCATATGTCAACTCCAGACTTGTCCAGATCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| 3UTR CCA 72 bp | ATCTGGACAAGTCTGGAGTTGACATATGGTAGTAGTTaGGTAACCGAATATCATAGTGATGTTTCTTTCCTA | + |
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Preference number: 3 (lower is better) Translates to: IWTSLELTYGSS*VTEYHSDVSFL Trigger: TAGGAAAGAAACATCACTATGATATTCGGTTACCCAACTACTACCATATGTCAACTCCAGACTTGTCCAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR CCA 90 bp | TCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATGCTGCGCAAAGTGGCGAGGTGGTAAATaGCCCCTTCGGCCTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SLPIKTENRREMYRCCAKWRGGK*PLRPPA Trigger: AGCAGGAGGCCGAAGGGGCCATTTACCACCTCGCCA...CTTTGCGCAGCATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR TCA 90 bp | TGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATGCTGCGCAAAGAGTAGGATCCCGAGGGGCTTaGAGAGCGAGCTGTACAACA | + |
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Preference number: 4 (lower is better) Translates to: CQLKPKTGGRCTDAAQRVGSRGA*RASCTT Trigger: TGTTGTACAGCTCGCTCTTCAAGCCCCTCGGGATCC...TACTCTTTGCGCAGCATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR GCA 90 bp | CTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATGCTGCGCAAAGAGTCCTGCTTCCAGGTGGTaGAGAGTGGGTGTTCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: LPIKTENRREMYRCCAKSPASRW*RVGVQS Trigger: TGACTGAACACCCACTCTGCACCACCTGGAAGCAGG...ACTCTTTGCGCAGCATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR GCA 90 bp | GATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCATTATAACAGTAGCCCCTTCGGCCTCCTaGTTCCAGGTGGTGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: DAEKGQTAHPYSSPIITVAPSAS*FQVVQS Trigger: ACTCTGCACCACCTGGAAGCAGGAGGCCGAAGGGGC...TACTGTTATAATGGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR GCA 90 bp | TATCTGCAATGTCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATGCCCCTTCGGCCTCCTaGTTCCAGGTGGTGCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: YLQCHCQLKPKTGGRCTDAPSAS*FQVVQS Trigger: ACTCTGCACCACCTGGAAGCAGGAGGCCGAAGGGGC...ATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR CCA 90 bp | CACATTCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATTGGCGAGGTGGTAAATaGCCCCTTCGGCCTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: HILSVLMQKRGKLPIRIHWRGGK*PLRPPA Trigger: AGCAGGAGGCCGAAGGGGCCATTTACCACCTCGCCA...ATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGAATGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | CTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCAAGGTTTTCCCCTGCATaGCGTAGCAGTGCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LSVLMQKRGKLPIRIHLPRFSPA*RSSAPS Trigger: AGAAGGAGCACTGCTACGCCATGCAGGGGAAAACCT...TGGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | TCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATGCTGCGCAAAGCGGAGAGTCGATCAATaGAGGTTTTCCCCTGCATGG | + |
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Preference number: 4 (lower is better) Translates to: SLPIKTENRREMYRCCAKRRVDQ*RFSPAW Trigger: CCATGCAGGGGAAAACCTCCATTGATCGACTCTCCG...CTTTGCGCAGCATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR GCA 90 bp | CACATTCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCCTGCTTCCAGGTGGTaGAGAGTGGGTGTTCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: HILSVLMQKRGKLPIRIHPASRW*RVGVQS Trigger: TGACTGAACACCCACTCTGCACCACCTGGAAGCAGG...ATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGAATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR GCA 90 bp | TCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCCTCGGGCGAAGGTTATaGTGTGAACTTGATACGCGA | + |
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Preference number: 4 (lower is better) Translates to: SLSSDAEKGQTAHPYSSPLGRRL*CELDTR Trigger: TCGCGTATCAAGTTCACAGCATAACCTTCGCCCGAG...GGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | TATCTGCAATGTCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCGATCCAGGTGGTGCAGAGTaGGTGTTCAGTCACCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: YLQCHCQLKPKTGGRCTDPGGAE*VFSHQA Trigger: AGCTTGGTGACTGAACACCCACTCTGCACCACCTGG...ATCGGTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR TCA 90 bp | AGTTTATCTGCAATGTCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACCCAGCCCCAGCAAGCTaGAGACATAAAGGAGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SLSAMSLPIKTENRREMYPAPAS*RHKGAQ Trigger: TTGGGCTCCTTTATGTCTTCAGCTTGCTGGGGCTGG...GTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR TCA 90 bp | CACATTCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATGCTGTGAGAGTTACCTaGAAAATGCCTTCCTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: HILSVLMQKRGKLPIRIHAVRVT*KMPSSV Trigger: CACAGAGGAAGGCATTTTTCAGGTAACTCTCACAGC...ATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGAATGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR GCA 90 bp | GATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCATTATAACAGTACGGGAGATGTACCGATaGTGCGCAAAGAGTAGATAC | + |
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Preference number: 4 (lower is better) Translates to: DAEKGQTAHPYSSPIITVREMYR*CAKSRY Trigger: GTATCTACTCTTTGCGCAGCATCGGTACATCTCCCG...TACTGTTATAATGGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | AGTTTATCTGCAATGTCACTGCCAATTAAAACCGAAAACAGGCGGGAGATGTACAGGTTTTCCCCTGCATaGCGTAGCAGTGCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: SLSAMSLPIKTENRREMYRFSPA*RSSAPS Trigger: AGAAGGAGCACTGCTACGCCATGCAGGGGAAAACCT...GTACATCTCCCGCCTGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR TCA 90 bp | CACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAAAGCAGATTCCCAGCCCCAGCAAGCTaGAGACATAAAGGAGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: HNNNVTYIHQRLSQKSRFPAPAS*RHKGAQ Trigger: TTGGGCTCCTTTATGTCTTCAGCTTGCTGGGGCTGG...GAATCTGCTTTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR TCA 90 bp | TGTTTAGTCCCGTCAAAGAACTTCACATATAAAAGAAATTGCTTCCCACAACAAGGATCCCGAGGGGCTTaGAGAGCGAGCTGTACAACA | + |
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Preference number: 4 (lower is better) Translates to: CLVPSKNFTYKRNCFPQQGSRGA*RASCTT Trigger: TGTTGTACAGCTCGCTCTTCAAGCCCCTCGGGATCC...TTGTTGTGGGAAGCAATTTCTTTTATATGTGAAGTTCTTTGACGGGACTAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | ATTGCTTCCCACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAACCAGGTGGTGCAGAGTaGGTGTTCAGTCACCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: IASHNNNVTYIHQRLSQKPGGAE*VFSHQA Trigger: AGCTTGGTGACTGAACACCCACTCTGCACCACCTGG...TTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTGGGAAGCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | GCTTCCCACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAAAGCGAGCTGTACAACACATaGAAATCTCGGGCGAAGGTT | + |
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Preference number: 4 (lower is better) Translates to: ASHNNNVTYIHQRLSQKSELYNT*KSRAKV Trigger: AACCTTCGCCCGAGATTTCCATGTGTTGTACAGCTC...GCTTTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTGGGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | ATTGCTTCCCACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAACGGAGAGTCGATCAATaGAGGTTTTCCCCTGCATGG | + |
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Preference number: 4 (lower is better) Translates to: IASHNNNVTYIHQRLSQKRRVDQ*RFSPAW Trigger: CCATGCAGGGGAAAACCTCCATTGATCGACTCTCCG...TTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTGGGAAGCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| 3UTR CAA 72 bp | ACTGTTCTGTTAGGGGTGATCTGGACAAGTCTGGAGTaGACATATGGTAGTAGTTGGGTAACCGAATATCAT | + |
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Preference number: 4 (lower is better) Translates to: TVLLGVIWTSLE*TYGSSWVTEYH Trigger: ATGATATTCGGTTACCCAACTACTACCATATGTCAACTCCAGACTTGTCCAGATCACCCCTAACAGAACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS-3UTR GCA 90 bp | CACATTCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATTATCTGCAATGTCACTaGCAATTAAAACCGAAAACA | + |
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Preference number: 4 (lower is better) Translates to: HILSVLMQKRGKLPIRIHYLQCH*QLKPKT Trigger: TGTTTTCGGTTTTAATTGGCAGTGACATTGCAGATA...ATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGAATGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | ATTGCTTCCCACAACAACAATGTAACTTACATTCATCAGAGATTGTCCCAGAAAAAATGCCTTCCTCTGTaGGTCTTAGCGAATCCCACT | + |
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Preference number: 4 (lower is better) Translates to: IASHNNNVTYIHQRLSQKKCLPL*VLANPT Trigger: AGTGGGATTCGCTAAGACCCACAGAGGAAGGCATTT...TTTCTGGGACAATCTCTGATGAATGTAAGTTACATTGTTGTTGTGGGAAGCAAT 41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CCA 90 bp | GATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCATTATAACAGTAACATATGGTAGTAGTTaGGTAACCGAATATCATAGT | + |
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Preference number: 4 (lower is better) Translates to: DAEKGQTAHPYSSPIITVTYGSS*VTEYHS Trigger: ACTATGATATTCGGTTACCCAACTACTACCATATGT...TACTGTTATAATGGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CAA 90 bp | TCTCTCAGTTCTGATGCAGAAAAGGGGCAAACTGCCCATCCGTATTCATCTCCCGGGATCCCGAGGGGCTaGAAGAGCGAGCTGTACAAC | + |
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Preference number: 5 (lower is better) Translates to: SLSSDAEKGQTAHPYSSPGIPRG*KSELYN Trigger: GTTGTACAGCTCGCTCTTCAAGCCCCTCGGGATCCC...GGGAGATGAATACGGATGGGCAGTTTGCCCCTTTTCTGCATCAGAACTGAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS-3UTR CAA 90 bp | ATTTGTTACAATGTTGTCTGGAATTCCGGAACTGTTCTGTTAGGGGTGATCTGGGGGATCCCGAGGGGCTaGAAGAGCGAGCTGTACAAC | + |
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Preference number: 5 (lower is better) Translates to: ICYNVVWNSGTVLLGVIWGIPRG*KSELYN Trigger: GTTGTACAGCTCGCTCTTCAAGCCCCTCGGGATCCC...CCAGATCACCCCTAACAGAACAGTTCCGGAATTCCAGACAACATTGTAACAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000161803.2 |
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| CDS GCA 72 bp | GGTAAATGGCCCCTTCGGCCTCCTGCTTCCAGGTGGTaGAGAGTGGGTGTTCAGTCACCAAGCTTTTCCATA | + |
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Preference number: 6 (lower is better) Translates to: GKWPLRPPASRW*RVGVQSPSFSI Trigger: TATGGAAAAGCTTGGTGACTGAACACCCACTCTGCACCACCTGGAAGCAGGAGGCCGAAGGGGCCATTTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000019994.14 ENSMUST00000161803.2 ENSMUST00000175658.2 |
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| CDS CAA 90 bp | CTCAGAGCAATTGTTCTGAAGACGGGCAAAGGGATCCCGAGGGGCTaGAAGAGCGAGCTGTACAACACATGGAAATCTCGGGCGAAGGTT | + |
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Preference number: 6 (lower is better) Translates to: LRAIVLKTGKGIPRG*KSELYNTWKSRAKV Trigger: AACCTTCGCCCGAGATTTCCATGTGTTGTACAGCTCGCTCTTCAAGCCCCTCGGGATCCCTTTGCCCGTCTTCAGAACAATTGCTCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019994.14 ENSMUST00000161803.2 |
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| CDS CAA 72 bp | ATTGTTCTGAAGACGGGCAAAGGGATCCCGAGGGGCTaGAAGAGCGAGCTGTACAACACATGGAAATCTCGG | + |
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Preference number: 6 (lower is better) Translates to: IVLKTGKGIPRG*KSELYNTWKSR Trigger: CCGAGATTTCCATGTGTTGTACAGCTCGCTCTTCAAGCCCCTCGGGATCCCTTTGCCCGTCTTCAGAACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019994.14 ENSMUST00000161803.2 |
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| CDS CAA 90 bp | GCTGTACAACACATGGAAATCTCGGGCGAAGGTTATGCTGTGAACTaGATACGCGATGTGAACGAACTGCATGAAGCAGATGACAAACAG | + |
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Preference number: 6 (lower is better) Translates to: AVQHMEISGEGYAVN*IRDVNELHEADDKQ Trigger: CTGTTTGTCATCTGCTTCATGCAGTTCGTTCACATCGCGTATCAAGTTCACAGCATAACCTTCGCCCGAGATTTCCATGTGTTGTACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019994.14 ENSMUST00000161803.2 |
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| CDS TCA 72 bp | CAGAAATTCGCCATCGACTGTCACTCTGATTCTTCCTaGGATGAGCACGGAGAGTCGATCAATGGAGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: QKFAIDCHSDSS*DEHGESINGGF Trigger: AAAACCTCCATTGATCGACTCTCCGTGCTCATCTCAGGAAGAATCAGAGTGACAGTCGATGGCGAATTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019994.14 |
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| CDS GCA 72 bp | AGCTGTACAACACATGGAAATCTCGGGCGAAGGTTATaGTGTGAACTTGATACGCGATGTGAACGAACTGCA | + |
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Preference number: 6 (lower is better) Translates to: SCTTHGNLGRRL*CELDTRCERTA Trigger: TGCAGTTCGTTCACATCGCGTATCAAGTTCACAGCATAACCTTCGCCCGAGATTTCCATGTGTTGTACAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019994.14 ENSMUST00000161803.2 |
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| CDS CAA 72 bp | CACATGGAAATCTCGGGCGAAGGTTATGCTGTGAACTaGATACGCGATGTGAACGAACTGCATGAAGCAGAT | + |
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Preference number: 6 (lower is better) Translates to: HMEISGEGYAVN*IRDVNELHEAD Trigger: ATCTGCTTCATGCAGTTCGTTCACATCGCGTATCAAGTTCACAGCATAACCTTCGCCCGAGATTTCCATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019994.14 ENSMUST00000161803.2 |
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