Pregenerated sensors for POPDC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022803Ensembl transcript IDs: ENSMUST00000023494.13, ENSMUST00000114739.2
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTTCTTCACGTCATGTCCATCCCCCAGCTTGCCACACATCTTTCTaGAGGGCTAAGAGGAGGGGTGAGAGTATAAGTGGCCATCCGGGG | + |
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Preference number: 1 (lower is better) Translates to: VSSRHVHPPACHTSF*RAKRRGESISGHPG Trigger: CCCCGGATGGCCACTTATACTCTCACCCCTCCTCTTAGCCCTCCAGAAAGATGTGTGGCAAGCTGGGGGATGGACATGACGTGAAGAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR TCA 90 bp | TTGGATTCTTTCAGACAATTTAAAGCAACAACACGGGGAGAGGCGTaGAGCGTTTTATTGCATGCTTGCAGGACGCCATGTCCTGTCATA | + |
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Preference number: 1 (lower is better) Translates to: LDSFRQFKATTRGEA*SVLLHACRTPCPVI Trigger: TATGACAGGACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCTTTAAATTGTCTGAAAGAATCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR CCA 90 bp | TCCGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCCTCAGGAGTGTGAATTaGAGCCAGAGGGGCCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SGEHGGVPSGYRDDSSVILRSVN*SQRGLG Trigger: TCCCAGGCCCCTCTGGCTCCAATTCACACTCCTGAG...GATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| 3UTR-3UTR TCA 90 bp | AGGAGGGGTGAGAGTATAAGTGGCCATCCGGGGAACATGGAGGAGTGCCATCTGGAGACGACAGCTCTGTaGTCCTTAGAGCTCAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: RRGESISGHPGNMEECHLETTAL*SLELRS Trigger: ACTCCTGAGCTCTAAGGATCACAGAGCTGTCGTCTC...CAGATGGCACTCCTCCATGTTCCCCGGATGGCCACTTATACTCTCACCCCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| 3UTR-3UTR TCA 90 bp | GAGTCAGGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCTGAAGGTGATCTGGACATAACTTaGGAAGAGTTCTGGAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: ESGQVPLDPPAVRKAPEGDLDIT*EEFWRG Trigger: TCCTCTCCAGAACTCTTCTCAAGTTATGTCCAGATC...ACCTTCAGGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCCTGACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| 3UTR-3UTR GCA 90 bp | TCCTGTCATAGGTGCTCTACCCAATCAGCTCACTGGATCCTCACAACAACCCTGGGGAACATGGAGGAGTaGCATCTGGCTACAGAGACG | + |
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Preference number: 2 (lower is better) Translates to: SCHRCSTQSAHWILTTTLGNMEE*HLATET Trigger: CGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCC...CAGGGTTGTTGTGAGGATCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGGGGAACATGGAGGAGTaGCATCTGGCTACAGAGACG | + |
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Preference number: 2 (lower is better) Translates to: LLHACRTPCPVIGALPNQGNMEE*HLATET Trigger: CGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCC...CTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGGTCCATCCCCCAGCTTaGCACACATCTTTCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LLHACRTPCPVIGALPNQVHPPA*HTSFWR Trigger: CCTCCAGAAAGATGTGTGGCAAGCTGGGGGATGGAC...CTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGTGCCACACATCTTTCTaGAGGGCTAAGAGGAGGGGT | + |
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Preference number: 2 (lower is better) Translates to: LLHACRTPCPVIGALPNQCHTSF*RAKRRG Trigger: ACCCCTCCTCTTAGCCCTCCAGAAAGATGTGTGGCA...CTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR GCA 90 bp | CTTTCAGACAATTTAAAGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCGTCCATCCCCCAGCTTaGCACACATCTTTCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LSDNLKQQHGERREAFYCVHPPA*HTSFWR Trigger: CCTCCAGAAAGATGTGTGGCAAGCTGGGGGATGGAC...GCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCTTTAAATTGTCTGAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR CAA 90 bp | CGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCCTGCTCAGGAGTGTGAATaGGAGCCAGAGGGGCCTGGG | + |
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Preference number: 3 (lower is better) Translates to: RGTWRSAIWLQRRQLCDPAQECE*EPEGPG Trigger: CCCAGGCCCCTCTGGCTCCAATTCACACTCCTGAGC...AGGATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| 3UTR TCA 72 bp | ATCAGCTCACTGGATCCTCACAACAACCCTGTGACGTaGGTTCCTAGCCTCACAGTCCAGGCTCAGAGGCCG | + |
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Preference number: 3 (lower is better) Translates to: ISSLDPHNNPVT*VPSLTVQAQRP Trigger: CGGCCTCTGAGCCTGGACTGTGAGGCTAGGAACTCACGTCACAGGGTTGTTGTGAGGATCCAGTGAGCTGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR CCA 72 bp | CGTCATGTCCATCCCCCAGCTTGCCACACATCTTTCTaGAGGGCTAAGAGGAGGGGTGAGAGTATAAGTGGC | + |
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Preference number: 3 (lower is better) Translates to: RHVHPPACHTSF*RAKRRGESISG Trigger: GCCACTTATACTCTCACCCCTCCTCTTAGCCCTCCAGAAAGATGTGTGGCAAGCTGGGGGATGGACATGACG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCTACCCAATCAGCTCACTGGATCCTCACAACAACCCTGTGACGTGAGTTCCTGTCCATCCCCCAGCTaGCCACACATCTTTCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: ALPNQLTGSSQQPCDVSSCPSPS*PHIFLE Trigger: CTCCAGAAAGATGTGTGGCAAGCTGGGGGATGGACA...GGAACTCACGTCACAGGGTTGTTGTGAGGATCCAGTGAGCTGATTGGGTAGAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR TCA 72 bp | GAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTaGTCCTTAGAGCTCAGGAGTGTGAATTGGAGCCAG | + |
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Preference number: 3 (lower is better) Translates to: EECHLATETTAL*SLELRSVNWSQ Trigger: CTGGCTCCAATTCACACTCCTGAGCTCTAAGGATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| 3UTR TCA 72 bp | ACCCAATCAGCTCACTGGATCCTCACAACAACCCTGTaGCGTGAGTTCCTAGCCTCACAGTCCAGGCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: TQSAHWILTTTL*REFLASQSRLR Trigger: TCTGAGCCTGGACTGTGAGGCTAGGAACTCACGTCACAGGGTTGTTGTGAGGATCCAGTGAGCTGATTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR-3UTR CAA 90 bp | GTTCCTAGCCTCACAGTCCAGGCTCAGAGGCCGTGTAAACCTGGCAATGTCCTGGGATCTGGACATAACTaGAGAAGAGTTCTGGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: VPSLTVQAQRPCKPGNVLGSGHN*RRVLER Trigger: CCTCTCCAGAACTCTTCTCAAGTTATGTCCAGATCC...CAGGACATTGCCAGGTTTACACGGCCTCTGAGCCTGGACTGTGAGGCTAGGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| 3UTR GCA 72 bp | ATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTaGTCTACCCAATCAGCTCACTGGATCCTCACAACA | + |
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Preference number: 3 (lower is better) Translates to: IACLQDAMSCHR*STQSAHWILTT Trigger: TGTTGTGAGGATCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| 3UTR TCA 72 bp | TTCAGACAATTTAAAGCAACAACACGGGGAGAGGCGTaGAGCGTTTTATTGCATGCTTGCAGGACGCCATGT | + |
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Preference number: 3 (lower is better) Translates to: FRQFKATTRGEA*SVLLHACRTPC Trigger: ACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCTTTAAATTGTCTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | GAGTCAGGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCTGAAGGTACCTGCAGGGGCACCTaGAGGGGCAGGCACAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: ESGQVPLDPPAVRKAPEGTCRGT*RGRHSV Trigger: GACACTGTGCCTGCCCCTGCAGGTGCCCCTGCAGGT...ACCTTCAGGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCCTGACTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | CTCACAGTCCAGGCTCAGAGGCCGTGTAAACCTGGCAATGTCCTGCAACCCATACACTCGAACCCGGCCTaGGAGGAGCAGGGACAGGCG | + |
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Preference number: 4 (lower is better) Translates to: LTVQAQRPCKPGNVLQPIHSNPA*EEQGQA Trigger: CGCCTGTCCCTGCTCCTCTCAGGCCGGGTTCGAGTG...TATGGGTTGCAGGACATTGCCAGGTTTACACGGCCTCTGAGCCTGGACTGTGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | GACAGCTCTGTGATCCTTAGAGCTCAGGAGTGTGAATTGGAGCCAGAGGGGCCTCAGATGGGCCTGGCCTaGGCAGGGGACACAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: DSSVILRAQECELEPEGPQMGLA*AGDTAA Trigger: GGCAGCTGTGTCCCCTGCTCAGGCCAGGCCCATCTG...AGGCCCCTCTGGCTCCAATTCACACTCCTGAGCTCTAAGGATCACAGAGCTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR GCA 90 bp | GCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACACCTGCAGGGGCACCTaGAGGGGCAGGCACAGTGTC | + |
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Preference number: 4 (lower is better) Translates to: ACLQDAMSCHRCSTQSAHTCRGT*RGRHSV Trigger: GACACTGTGCCTGCCCCTGCAGGTGCCCCTGCAGGT...GTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | GTTCCTAGCCTCACAGTCCAGGCTCAGAGGCCGTGTAAACCTGGCAATGTCCTGGGGGTGTTGGCACGATaGAGATGGGCCTGGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: VPSLTVQAQRPCKPGNVLGVLAR*RWAWPE Trigger: CTCAGGCCAGGCCCATCTGCATCGTGCCAACACCCC...CAGGACATTGCCAGGTTTACACGGCCTCTGAGCCTGGACTGTGAGGCTAGGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | AAGGATGGAGTCAGGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCGGGAAAGTTGGTGGTTaGTGGAGGCGCGGAACAAGG | + |
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Preference number: 4 (lower is better) Translates to: KDGVRPGASGPSCCKEGSGKVGG*WRRGTR Trigger: CCTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCC...GGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCCTGACTCCATCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | GTTCCTAGCCTCACAGTCCAGGCTCAGAGGCCGTGTAAACCTGGCAATGTCCTGCGATGCAGATGGGCCTaGCCTGAGCAGGGGACACAG | + |
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Preference number: 4 (lower is better) Translates to: VPSLTVQAQRPCKPGNVLRCRWA*PEQGTQ Trigger: CTGTGTCCCCTGCTCAGGCCAGGCCCATCTGCATCG...CAGGACATTGCCAGGTTTACACGGCCTCTGAGCCTGGACTGTGAGGCTAGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | TCCGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCACCAGCTGTGCCAGCTaGAGCAGGCAAGCCACTGTC | + |
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Preference number: 4 (lower is better) Translates to: SGEHGGVPSGYRDDSSVITSCAS*SRQATV Trigger: GACAGTGGCTTGCCTGCTTCAGCTGGCACAGCTGGT...GATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | GGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCTGAAGGTGAGTTTATAGCCCAGCAGGGCTaGGAAGAGGCGGGAGATGTA | + |
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Preference number: 4 (lower is better) Translates to: GQVPLDPPAVRKAPEGEFIAQQG*EEAGDV Trigger: TACATCTCCCGCCTCTTCTCAGCCCTGCTGGGCTAT...AAACTCACCTTCAGGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | TGGCAATGTCCTGCAACCCATAAAGGATGGAGTCAGGCCAGGTGCCTCTGGACCCTCTGGTTCCCCGTCTaGGGCAGAGGGACTCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: WQCPATHKGWSQARCLWTLWFPV*GRGTQN Trigger: GTTCTGAGTCCCTCTGCCTCAGACGGGGAACCAGAG...GGTCCAGAGGCACCTGGCCTGACTCCATCCTTTATGGGTTGCAGGACATTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | TCCTGTCATAGGTGCTCTACCCAATCAGCTCACTGGATCCTCACAACAACCCTGCAGATGGGCCTGGCCTaGGCAGGGGACACAGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: SCHRCSTQSAHWILTTTLQMGLA*AGDTAA Trigger: GGCAGCTGTGTCCCCTGCTCAGGCCAGGCCCATCTG...CAGGGTTGTTGTGAGGATCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | GCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACGGGGTGTTGGCACGATaGAGATGGGCCTGGCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: ACLQDAMSCHRCSTQSAHGVLAR*RWAWPE Trigger: CTCAGGCCAGGCCCATCTGCATCGTGCCAACACCCC...GTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | GCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACTGGACGATGCAGATGGGCCTaGCCTGAGCAGGGGACACAG | + |
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Preference number: 4 (lower is better) Translates to: ACRTPCPVIGALPNQLTGRCRWA*PEQGTQ Trigger: CTGTGTCCCCTGCTCAGGCCAGGCCCATCTGCATCG...TCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | TGGCAATGTCCTGCAACCCATAAAGGATGGAGTCAGGCCAGGTGCCTCTGGACCCCAGCACCAGACTGGTaGAGTCCTCACCCAGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: WQCPATHKGWSQARCLWTPAPDW*SPHPGC Trigger: GCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGG...GGTCCAGAGGCACCTGGCCTGACTCCATCCTTTATGGGTTGCAGGACATTGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR TCA 90 bp | ACATCTTTCTGGAGGGCTAAGAGGAGGGGTGAGAGTATAAGTGGCCATCCGGGGACCAGCTGTGCCAGCTaGAGCAGGCAAGCCACTGTC | + |
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Preference number: 4 (lower is better) Translates to: TSFWRAKRRGESISGHPGTSCAS*SRQATV Trigger: GACAGTGGCTTGCCTGCTTCAGCTGGCACAGCTGGT...CCCCGGATGGCCACTTATACTCTCACCCCTCCTCTTAGCCCTCCAGAAAGATGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | CGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCCTGGGAAAGTTGGTGGTTaGTGGAGGCGCGGAACAAGG | + |
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Preference number: 4 (lower is better) Translates to: RGTWRSAIWLQRRQLCDPGKVGG*WRRGTR Trigger: CCTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCC...AGGATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR CCA 90 bp | TCCGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCGAACGTGGTAGAGGCTaGGAAGGCGGATGTCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: SGEHGGVPSGYRDDSSVIERGRG*EGGCRS Trigger: GCTTCGACATCCGCCTTCCCAGCCTCTACCACGTTC...GATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | CATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCCTTAGAGCTTTGGCACGATGCAGATaGGCCTGGCCTGAGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: HGGVPSGYRDDSSVILRALARCR*AWPEQG Trigger: CCCCTGCTCAGGCCAGGCCCATCTGCATCGTGCCAA...AGCTCTAAGGATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR CCA 90 bp | GCTCTACCCAATCAGCTCACTGGATCCTCACAACAACCCTGTGACGTGAGTTCCTTGGCACGATGCAGATaGGCCTGGCCTGAGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: ALPNQLTGSSQQPCDVSSLARCR*AWPEQG Trigger: CCCCTGCTCAGGCCAGGCCCATCTGCATCGTGCCAA...GGAACTCACGTCACAGGGTTGTTGTGAGGATCCAGTGAGCTGATTGGGTAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | TCCGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCGGAACAAGGGGGTGTTaGCACGATGCAGATGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: SGEHGGVPSGYRDDSSVIGTRGC*HDADGP Trigger: AGGCCCATCTGCATCGTGCCAACACCCCCTTGTTCC...GATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | TGGCAATGTCCTGCAACCCATAAAGGATGGAGTCAGGCCAGGTGCCTCTGGACCAAAGTTGGTGGTTGCTaGAGGCGCGGAACAAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: WQCPATHKGWSQARCLWTKVGGC*RRGTRG Trigger: CCCCCTTGTTCCGCGCCTCCAGCAACCACCAACTTT...GGTCCAGAGGCACCTGGCCTGACTCCATCCTTTATGGGTTGCAGGACATTGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | GTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTGCAGGGACAGGCGATTaGTGGGGGTCTCCCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VKRFIACLQDAMSCHRCSAGTGD*WGSPPP Trigger: TGGAGGGGGAGACCCCCATCAATCGCCTGTCCCTGC...AGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | TTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGGCAGGGACAGGCGATTaGTGGGGGTCTCCCCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LLHACRTPCPVIGALPNQAGTGD*WGSPPP Trigger: TGGAGGGGGAGACCCCCATCAATCGCCTGTCCCTGC...CTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | ACATCTTTCTGGAGGGCTAAGAGGAGGGGTGAGAGTATAAGTGGCCATCCGGGGATAGCCCAGCAGGGCTaGGAAGAGGCGGGAGATGTA | + |
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Preference number: 4 (lower is better) Translates to: TSFWRAKRRGESISGHPGIAQQG*EEAGDV Trigger: TACATCTCCCGCCTCTTCTCAGCCCTGCTGGGCTAT...CCCCGGATGGCCACTTATACTCTCACCCCTCCTCTTAGCCCTCCAGAAAGATGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | AACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGCTCTGGTTCCCCGTCTaGGGCAGAGGGACTCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: NNTGRGVKRFIACLQDAMLWFPV*GRGTQN Trigger: GTTCTGAGTCCCTCTGCCTCAGACGGGGAACCAGAG...CATGGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | CGGGGAACATGGAGGAGTGCCATCTGGCTACAGAGACGACAGCTCTGTGATCCTACGATAGACCAGCTGTaGCAGCTGAAGCAGGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: RGTWRSAIWLQRRQLCDPTIDQL*QLKQAS Trigger: GCTTGCCTGCTTCAGCTGGCACAGCTGGTCTATCGT...AGGATCACAGAGCTGTCGTCTCTGTAGCCAGATGGCACTCCTCCATGTTCCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR CCA 90 bp | GCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACTGGAAGAAACTGCCCGTCTTaGCTCACTCGAACCCGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ACRTPCPVIGALPNQLTGRNCPS*LTRTRP Trigger: AGGCCGGGTTCGAGTGAGCCAAGACGGGCAGTTTCT...TCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | GCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACGGAACAAGGGGGTGTTaGCACGATGCAGATGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ACLQDAMSCHRCSTQSAHGTRGC*HDADGP Trigger: AGGCCCATCTGCATCGTGCCAACACCCCCTTGTTCC...GTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR CCA 90 bp | AGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCCTCAGGAGTGTGAATTaGAGCCAGAGGGGCCTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: SNNTGRGVKRFIACLQDALRSVN*SQRGLG Trigger: TCCCAGGCCCCTCTGGCTCCAATTCACACTCCTGAG...GGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | AAGGATGGAGTCAGGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCCCCTCTTCAGAAGGATaGAGTGATTCCCATTCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: KDGVRPGASGPSCCKEGSPSSEG*SDSHSG Trigger: TCCTGAATGGGAATCACTGCATCCTTCTGAAGAGGG...GGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCCTGACTCCATCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR GCA 90 bp | GCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACAGCAGGGGACACAGCTaGCTCAAGGGCTTCTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: ACLQDAMSCHRCSTQSAHSRGHS*LKGFFI Trigger: GATGAAGAAGCCCTTGAGGCAGCTGTGTCCCCTGCT...GTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | GTTCCTAGCCTCACAGTCCAGGCTCAGAGGCCGTGTAAACCTGGCAATGTCCTGGTCAAGACCTGCTCATaGCAGCAGTGGACAATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: VPSLTVQAQRPCKPGNVLVKTCS*QQWTIS Trigger: GGAGATTGTCCACTGCTGCCATGAGCAGGTCTTGAC...CAGGACATTGCCAGGTTTACACGGCCTCTGAGCCTGGACTGTGAGGCTAGGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | AACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGAGAAACTGCCCGTCTTaGCTCACTCGAACCCGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: NNTGRGVKRFIACLQDAMRNCPS*LTRTRP Trigger: AGGCCGGGTTCGAGTGAGCCAAGACGGGCAGTTTCT...CATGGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR GCA 90 bp | AACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGAGCAGGGGACACAGCTaGCTCAAGGGCTTCTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: NNTGRGVKRFIACLQDAMSRGHS*LKGFFI Trigger: GATGAAGAAGCCCTTGAGGCAGCTGTGTCCCCTGCT...CATGGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | AGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCGTCAAGACCTGCTCATaGCAGCAGTGGACAATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SNNTGRGVKRFIACLQDAVKTCS*QQWTIS Trigger: GGAGATTGTCCACTGCTGCCATGAGCAGGTCTTGAC...GGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR TCA 90 bp | TGGCAATGTCCTGCAACCCATAAAGGATGGAGTCAGGCCAGGTGCCTCTGGACCTTCAGAAGGATGCAGTaGTTCCCATTCAGGAGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: WQCPATHKGWSQARCLWTFRRMQ*FPFRRV Trigger: GACTCTCCTGAATGGGAATCACTGCATCCTTCTGAA...GGTCCAGAGGCACCTGGCCTGACTCCATCCTTTATGGGTTGCAGGACATTGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CCA 90 bp | GTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTAAAGTTGGTGGTTGCTaGAGGCGCGGAACAAGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VKRFIACLQDAMSCHRCSKVGGC*RRGTRG Trigger: CCCCCTTGTTCCGCGCCTCCAGCAACCACCAACTTT...AGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR TCA 90 bp | GGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCTGAAGGTGAGTTTATTCAGGAGAGTCCATaGACTGATACGGAAAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: GQVPLDPPAVRKAPEGEFIQESP*TDTERC Trigger: ACATCTTTCCGTATCAGTTCATGGACTCTCCTGAAT...AAACTCACCTTCAGGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | GACAGCTCTGTGATCCTTAGAGCTCAGGAGTGTGAATTGGAGCCAGAGGGGCCTTTCAGAAGGATGCAGTaGTTCCCATTCAGGAGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: DSSVILRAQECELEPEGPFRRMQ*FPFRRV Trigger: GACTCTCCTGAATGGGAATCACTGCATCCTTCTGAA...AGGCCCCTCTGGCTCCAATTCACACTCCTGAGCTCTAAGGATCACAGAGCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
||
| CDS-3UTR TCA 90 bp | GCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACTGGACAAACAGCTTGTCATTaGGGGTATAGAGCTTCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: ACRTPCPVIGALPNQLTGQTACH*GYRASP Trigger: CGGAGAAGCTCTATACCCTCAATGACAAGCTGTTTG...TCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | AGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCCAAACAGCTTGTCATTaGGGGTATAGAGCTTCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: SNNTGRGVKRFIACLQDAQTACH*GYRASP Trigger: CGGAGAAGCTCTATACCCTCAATGACAAGCTGTTTG...GGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR GCA 90 bp | GTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACGATAGACCAGCTGTaGCAGCTGAAGCAGGCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: VKRFIACLQDAMSCHRCSTIDQL*QLKQAS Trigger: GCTTGCCTGCTTCAGCTGGCACAGCTGGTCTATCGT...AGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR TCA 90 bp | AGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCGATCTGGACATAACTTaGGAAGAGTTCTGGAGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SNNTGRGVKRFIACLQDADLDIT*EEFWRG Trigger: TCCTCTCCAGAACTCTTCTCAAGTTATGTCCAGATC...GGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114739.2 |
||
| CDS-3UTR CCA 90 bp | CTTTCAGACAATTTAAAGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCCCTCCAGCACCAGACTaGTGGAGTCCTCACCCAGGT | + |
|
Preference number: 4 (lower is better) Translates to: LSDNLKQQHGERREAFYCPPAPD*WSPHPG Trigger: ACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGG...GCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCTTTAAATTGTCTGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR TCA 90 bp | AGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATTCAGGAGAGTCCATaGACTGATACGGAAAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: SNNTGRGVKRFIACLQDAIQESP*TDTERC Trigger: ACATCTTTCCGTATCAGTTCATGGACTCTCCTGAAT...GGCGTCCTGCAAGCATGCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CCA 90 bp | CCTCACCCAGGTTGCCGCTGTCCGGCCTGGGCATCCTGGGCATCCTaGCCCGGGGCAGAGGCACGGGAAAGTTGGTGGTTGCTGGAGGCG | + |
|
Preference number: 5 (lower is better) Translates to: PHPGCRCPAWASWAS*PGAEARESWWLLEA Trigger: CGCCTCCAGCAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCCAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
||
| CDS CCA 90 bp | TGGTGGAGTCCTCACCCAGGTTGCCGCTGTCCGGCCTGGGCATCCTaGGCATCCTGGCCCGGGGCAGAGGCACGGGAAAGTTGGTGGTTG | + |
|
Preference number: 5 (lower is better) Translates to: WWSPHPGCRCPAWAS*ASWPGAEARESWWL Trigger: CAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCCAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS GCA 90 bp | CCTCAAAATCCTCCAGCACCAGACTGGTGGAGTCCTCACCCAGGTTaGCGCTGTCCGGCCTGGGCATCCTGGGCATCCTGGCCCGGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: PQNPPAPDWWSPHPG*RCPAWASWASWPGA Trigger: TGCCCCGGGCCAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGATTTTGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS CCA 90 bp | TGGGCATCCTGGGCATCCTGGCCCGGGGCAGAGGCACGGGAAAGTTaGTGGTTGCTGGAGGCGCGGAACAAGGGGGTGTTGGCACGATGC | + |
|
Preference number: 5 (lower is better) Translates to: WASWASWPGAEARES*WLLEARNKGVLARC Trigger: GCATCGTGCCAACACCCCCTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCCAGGATGCCCAGGATGCCCA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CCA 90 bp | GCATCCTGGGCATCCTGGCCCGGGGCAGAGGCACGGGAAAGTTGGTaGTTGCTGGAGGCGCGGAACAAGGGGGTGTTGGCACGATGCAGA | + |
|
Preference number: 5 (lower is better) Translates to: ASWASWPGAEARESW*LLEARNKGVLARCR Trigger: TCTGCATCGTGCCAACACCCCCTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCCAGGATGCCCAGGATGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | AAGGATGGAGTCAGGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCCGTCTAGAGGCCAGGTaGCCGCTGTCCGGCCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: KDGVRPGASGPSCCKEGSRLEAR*PLSGLG Trigger: GCCCAGGCCGGACAGCGGCAACCTGGCCTCTAGACG...GGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCCTGACTCCATCCTT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | GAGTCAGGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCTGAAGGTAGAGGCACGGGAAAGTaGGTGGTTGCTGGAGGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: ESGQVPLDPPAVRKAPEGRGTGK*VVAGGA Trigger: CGCGCCTCCAGCAACCACCAACTTTCCCGTGCCTCT...ACCTTCAGGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCCTGACTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | GGCCAGGTGCCTCTGGACCCTCCTGCTGTAAGGAAGGCTCCTGAAGGTGAGTTTAGAGGCACGGGAAAGTaGGTGGTTGCTGGAGGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: GQVPLDPPAVRKAPEGEFRGTGK*VVAGGA Trigger: CGCGCCTCCAGCAACCACCAACTTTCCCGTGCCTCT...AAACTCACCTTCAGGAGCCTTCCTTACAGCAGGAGGGTCCAGAGGCACCTGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS TCA 90 bp | GCAGGGGCACCTGCAGGGGCAGGCACAGTGTCCTGTAGAGGAGATTaGATTCCTCCGGGAGGGTATTCACCCGGACACGATAGACCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: AGAPAGAGTVSCRGD*IPPGGYSPGHDRPA Trigger: AGCTGGTCTATCGTGTCCGGGTGAATACCCTCCCGGAGGAATTCAATCTCCTCTACAGGACACTGTGCCTGCCCCTGCAGGTGCCCCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CCA 90 bp | ACTCTGATCCTGAAACCTCCTCAAAATCCTCCAGCACCAGACTGGTaGAGTCCTCACCCAGGTTGCCGCTGTCCGGCCTGGGCATCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: TLILKPPQNPPAPDW*SPHPGCRCPAWASW Trigger: CCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGATTTTGAGGAGGTTTCAGGATCAGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS CCA 90 bp | ACGACTCTGATCCTGAAACCTCCTCAAAATCCTCCAGCACCAGACTaGTGGAGTCCTCACCCAGGTTGCCGCTGTCCGGCCTGGGCATCC | + |
|
Preference number: 5 (lower is better) Translates to: TTLILKPPQNPPAPD*WSPHPGCRCPAWAS Trigger: GGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGATTTTGAGGAGGTTTCAGGATCAGAGTCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR CAA 90 bp | GTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTGAGTCCTCACCCAGGTaGCCGCTGTCCGGCCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: VKRFIACLQDAMSCHRCSESSPR*PLSGLG Trigger: GCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTC...AGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS GCA 90 bp | GAATTCCTCCGGGAGGGTATTCACCCGGACACGATAGACCAGCTGTaGCAGCTGAAGCAGGCAAGCCACTGTCAGGAGGACGTTCCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: EFLREGIHPDTIDQL*QLKQASHCQEDVPK Trigger: CTTTGGAACGTCCTCCTGACAGTGGCTTGCCTGCTTCAGCTGGCACAGCTGGTCTATCGTGTCCGGGTGAATACCCTCCCGGAGGAATTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CCA 90 bp | CTGGTTCCCCGTCTGAGGCAGAGGGACTCAGAACGTGGTAGAGGCTaGGAAGGCGGATGTCGAAGCGTAACCCAAACTTGGCAAACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: LVPRLRQRDSERGRG*EGGCRSVTQTWQTA Trigger: AGCTGTTTGCCAAGTTTGGGTTACGCTTCGACATCCGCCTTCCCAGCCTCTACCACGTTCTGAGTCCCTCTGCCTCAGACGGGGAACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | GCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTACCCAATCAGCTCACCGGGAAAGTTGGTGGTaGCTGGAGGCGCGGAACAAG | + |
|
Preference number: 5 (lower is better) Translates to: ACLQDAMSCHRCSTQSAHRESWW*LEARNK Trigger: CTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCCG...GTGAGCTGATTGGGTAGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | CTCACAGTCCAGGCTCAGAGGCCGTGTAAACCTGGCAATGTCCTGCAACCCATACGGGAAAGTTGGTGGTaGCTGGAGGCGCGGAACAAG | + |
|
Preference number: 5 (lower is better) Translates to: LTVQAQRPCKPGNVLQPIRESWW*LEARNK Trigger: CTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCCG...TATGGGTTGCAGGACATTGCCAGGTTTACACGGCCTCTGAGCCTGGACTGTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | TCCTGTCATAGGTGCTCTACCCAATCAGCTCACTGGATCCTCACAACAACCCTGGCTCAGGAGTGTGAATaGGAGCCAGAGGGGCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: SCHRCSTQSAHWILTTTLAQECE*EPEGPG Trigger: CCCAGGCCCCTCTGGCTCCAATTCACACTCCTGAGC...CAGGGTTGTTGTGAGGATCCAGTGAGCTGATTGGGTAGAGCACCTATGACAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | TCTGGCTACAGAGACGACAGCTCTGTGATCCTTAGAGCTCAGGAGTGTGAATTGCAGAAACTGCCCGTCTaGGCTCACTCGAACCCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: SGYRDDSSVILRAQECELQKLPV*AHSNPA Trigger: GGCCGGGTTCGAGTGAGCCAAGACGGGCAGTTTCTG...CAATTCACACTCCTGAGCTCTAAGGATCACAGAGCTGTCGTCTCTGTAGCCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR CAA 90 bp | GTGAAGCGTTTTATTGCATGCTTGCAGGACGCCATGTCCTGTCATAGGTGCTCTCAGAAACTGCCCGTCTaGGCTCACTCGAACCCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: VKRFIACLQDAMSCHRCSQKLPV*AHSNPA Trigger: GGCCGGGTTCGAGTGAGCCAAGACGGGCAGTTTCTG...AGAGCACCTATGACAGGACATGGCGTCCTGCAAGCATGCAATAAAACGCTTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS-3UTR CAA 90 bp | TCTGGCTACAGAGACGACAGCTCTGTGATCCTTAGAGCTCAGGAGTGTGAATTGCGGAACAAGGGGGTGTaGGCACGATGCAGATGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: SGYRDDSSVILRAQECELRNKGV*ARCRWA Trigger: GGCCCATCTGCATCGTGCCAACACCCCCTTGTTCCG...CAATTCACACTCCTGAGCTCTAAGGATCACAGAGCTGTCGTCTCTGTAGCCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
||
| CDS TCA 90 bp | GGCGGATGTCGAAGCGTAACCCAAACTTGGCAAACAGCTTGTCATTaGGGGTATAGAGCTTCTCCGAGATGTCATAGCCCAGCAGGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: GGCRSVTQTWQTACH*GYRASPRCHSPAGL Trigger: CAGCCCTGCTGGGCTATGACATCTCGGAGAAGCTCTATACCCTCAATGACAAGCTGTTTGCCAAGTTTGGGTTACGCTTCGACATCCGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS TCA 90 bp | CGCAGTCAGCGTCACCTGGAAGGTCCCCTCTTCAGAAGGATGCAGTaGTTCCCATTCAGGAGAGTCCATGAACTGATACGGAAAGATGTA | + |
|
Preference number: 5 (lower is better) Translates to: RSQRHLEGPLFRRMQ*FPFRRVHELIRKDV Trigger: TACATCTTTCCGTATCAGTTCATGGACTCTCCTGAATGGGAATCACTGCATCCTTCTGAAGAGGGGACCTTCCAGGTGACGCTGACTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS TCA 90 bp | TCCCCTCTTCAGAAGGATGCAGTGATTCCCATTCAGGAGAGTCCATaGACTGATACGGAAAGATGTAGTGCAGAAACTGCCCGTCTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: SPLQKDAVIPIQESP*TDTERCSAETARLG Trigger: GCCAAGACGGGCAGTTTCTGCACTACATCTTTCCGTATCAGTTCATGGACTCTCCTGAATGGGAATCACTGCATCCTTCTGAAGAGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR CAA 90 bp | TGCCACACATCTTTCTGGAGGGCTAAGAGGAGGGGTGAGAGTATAAGTGGCCATAAGCGTAACCCAAACTaGGCAAACAGCTTGTCATTG | + |
|
Preference number: 5 (lower is better) Translates to: CHTSFWRAKRRGESISGHKRNPN*ANSLSL Trigger: CAATGACAAGCTGTTTGCCAAGTTTGGGTTACGCTT...ATGGCCACTTATACTCTCACCCCTCCTCTTAGCCCTCCAGAAAGATGTGTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
||
| CDS-3UTR CAA 90 bp | TCTGGCTACAGAGACGACAGCTCTGTGATCCTTAGAGCTCAGGAGTGTGAATTGAAGCGTAACCCAAACTaGGCAAACAGCTTGTCATTG | + |
|
Preference number: 5 (lower is better) Translates to: SGYRDDSSVILRAQECELKRNPN*ANSLSL Trigger: CAATGACAAGCTGTTTGCCAAGTTTGGGTTACGCTT...CAATTCACACTCCTGAGCTCTAAGGATCACAGAGCTGTCGTCTCTGTAGCCAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS-3UTR CAA 90 bp | CTTTCAGACAATTTAAAGCAACAACACGGGGAGAGGCGTGAAGCGTTTTATTGCGGATCTGGACATAACTaGAGAAGAGTTCTGGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: LSDNLKQQHGERREAFYCGSGHN*RRVLER Trigger: CCTCTCCAGAACTCTTCTCAAGTTATGTCCAGATCC...GCAATAAAACGCTTCACGCCTCTCCCCGTGTTGTTGCTTTAAATTGTCTGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114739.2 |
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| CDS CCA 72 bp | GGTTGCCGCTGTCCGGCCTGGGCATCCTGGGCATCCTaGCCCGGGGCAGAGGCACGGGAAAGTTGGTGGTTG | + |
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Preference number: 6 (lower is better) Translates to: GCRCPAWASWAS*PGAEARESWWL Trigger: CAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCCAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS GCA 72 bp | CCTCCAGCACCAGACTGGTGGAGTCCTCACCCAGGTTaGCGCTGTCCGGCCTGGGCATCCTGGGCATCCTGG | + |
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Preference number: 6 (lower is better) Translates to: PPAPDWWSPHPG*RCPAWASWASW Trigger: CCAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS CAA 90 bp | TCCTCAAAATCCTCCAGCACCAGACTGGTGGAGTCCTCACCCAGGTaGCCGCTGTCCGGCCTGGGCATCCTGGGCATCCTGGCCCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: SSKSSSTRLVESSPR*PLSGLGILGILARG Trigger: GCCCCGGGCCAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGATTTTGAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS CCA 72 bp | GGCCCGGGGCAGAGGCACGGGAAAGTTGGTGGTTGCTaGAGGCGCGGAACAAGGGGGTGTTGGCACGATGCA | + |
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Preference number: 6 (lower is better) Translates to: GPGQRHGKVGGC*RRGTRGCWHDA Trigger: TGCATCGTGCCAACACCCCCTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CAA 72 bp | TCCTCCAGCACCAGACTGGTGGAGTCCTCACCCAGGTaGCCGCTGTCCGGCCTGGGCATCCTGGGCATCCTG | + |
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Preference number: 6 (lower is better) Translates to: SSSTRLVESSPR*PLSGLGILGIL Trigger: CAGGATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS CCA 72 bp | TGGGGGTCTCCCCCTCCACAGCGTAGGTCTGCTCTGTaGCCAGCGTCAAGACCTGCTCATGGCAGCAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: WGSPPPQRRSAL*PASRPAHGSSG Trigger: TCCACTGCTGCCATGAGCAGGTCTTGACGCTGGCCACAGAGCAGACCTACGCTGTGGAGGGGGAGACCCCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS GCA 72 bp | GATAGACAGCTCCTTCTACATCCGGTTTCCAGCTCCTaGACACGGGCGGCTGCCAGAGGAGCTGAGCCACCG | + |
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Preference number: 6 (lower is better) Translates to: DRQLLLHPVSSS*TRAAARGAEPP Trigger: CGGTGGCTCAGCTCCTCTGGCAGCCGCCCGTGTGCAGGAGCTGGAAACCGGATGTAGAAGGAGCTGTCTATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS GCA 72 bp | CGGGAGGGTATTCACCCGGACACGATAGACCAGCTGTaGCAGCTGAAGCAGGCAAGCCACTGTCAGGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: REGIHPDTIDQL*QLKQASHCQED Trigger: GTCCTCCTGACAGTGGCTTGCCTGCTTCAGCTGGCACAGCTGGTCTATCGTGTCCGGGTGAATACCCTCCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CCA 72 bp | CTGAAACCTCCTCAAAATCCTCCAGCACCAGACTGGTaGAGTCCTCACCCAGGTTGCCGCTGTCCGGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LKPPQNPPAPDW*SPHPGCRCPAW Trigger: CCAGGCCGGACAGCGGCAACCTGGGTGAGGACTCCACCAGTCTGGTGCTGGAGGATTTTGAGGAGGTTTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023494.13 |
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| CDS TCA 72 bp | CCTGCAGGGGCAGGCACAGTGTCCTGTAGAGGAGATTaGATTCCTCCGGGAGGGTATTCACCCGGACACGAT | + |
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Preference number: 6 (lower is better) Translates to: PAGAGTVSCRGD*IPPGGYSPGHD Trigger: ATCGTGTCCGGGTGAATACCCTCCCGGAGGAATTCAATCTCCTCTACAGGACACTGTGCCTGCCCCTGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS CCA 72 bp | CGTCTGAGGCAGAGGGACTCAGAACGTGGTAGAGGCTaGGAAGGCGGATGTCGAAGCGTAACCCAAACTTGG | + |
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Preference number: 6 (lower is better) Translates to: RLRQRDSERGRG*EGGCRSVTQTW Trigger: CCAAGTTTGGGTTACGCTTCGACATCCGCCTTCCCAGCCTCTACCACGTTCTGAGTCCCTCTGCCTCAGACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS TCA 72 bp | CGTCACCTGGAAGGTCCCCTCTTCAGAAGGATGCAGTaGTTCCCATTCAGGAGAGTCCATGAACTGATACGG | + |
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Preference number: 6 (lower is better) Translates to: RHLEGPLFRRMQ*FPFRRVHELIR Trigger: CCGTATCAGTTCATGGACTCTCCTGAATGGGAATCACTGCATCCTTCTGAAGAGGGGACCTTCCAGGTGACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS TCA 72 bp | CGAAGCGTAACCCAAACTTGGCAAACAGCTTGTCATTaGGGGTATAGAGCTTCTCCGAGATGTCATAGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RSVTQTWQTACH*GYRASPRCHSP Trigger: TGGGCTATGACATCTCGGAGAAGCTCTATACCCTCAATGACAAGCTGTTTGCCAAGTTTGGGTTACGCTTCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS GCA 72 bp | GCCGAAAAGATAGAAGCATCCATACACTCCACTGCCTaGCATAAAGCCCATAAGCAAGAAACAGTTGGCCAG | + |
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Preference number: 6 (lower is better) Translates to: AEKIEASIHSTA*HKAHKQETVGQ Trigger: CTGGCCAACTGTTTCTTGCTTATGGGCTTTATGGCAGGCAGTGGAGTGTATGGATGCTTCTATCTTTTCGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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| CDS TCA 72 bp | CAGAAGGATGCAGTGATTCCCATTCAGGAGAGTCCATaGACTGATACGGAAAGATGTAGTGCAGAAACTGCC | + |
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Preference number: 6 (lower is better) Translates to: QKDAVIPIQESP*TDTERCSAETA Trigger: GGCAGTTTCTGCACTACATCTTTCCGTATCAGTTCATGGACTCTCCTGAATGGGAATCACTGCATCCTTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023494.13 ENSMUST00000114739.2 |
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