Pregenerated sensors for POP7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029715Ensembl transcript IDs: ENSMUST00000031728.5, ENSMUST00000111035.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGCTaGAGTAACAAGGTAACAAGAGGCTCAGGACAGAACTCAGAACAA | + |
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Preference number: 1 (lower is better) Translates to: KEDSLLGLSILSPLG*SNKVTRGSGQNSEQ Trigger: TTGTTCTGAGTTCTGTCCTGAGCCTCTTGTTACCTTGTTACTTCAGCCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| 3UTR TCA 72 bp | AGAGGCTCAGGACAGAACTCAGAACAAGAGCCACTATaGAGCACTAGAAACCTCGGCCACATGGATGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: RGSGQNSEQEPL*STRNLGHMDVC Trigger: ACACACATCCATGTGGCCGAGGTTTCTAGTGCTTCATAGTGGCTCTTGTTCTGAGTTCTGTCCTGAGCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| 3UTR TCA 72 bp | TCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGCTaGAGTAACAAGGTAACAAGAGGCTCAGGACAGAAC | + |
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Preference number: 3 (lower is better) Translates to: SLLGLSILSPLG*SNKVTRGSGQN Trigger: GTTCTGTCCTGAGCCTCTTGTTACCTTGTTACTTCAGCCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | AGAAACCTCGGCCACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCCTGCCCGCCTGCAGCTaGAGGGCGATGTTGATGGCC | + |
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Preference number: 4 (lower is better) Translates to: RNLGHMDVCAQKPWWVQVLPACS*RAMLMA Trigger: GGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAG...GACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTGGCCGAGGTTTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | GCCACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCAGCCTCCCTTCCAAAGCTGCCCGCCTaGAGCTGCAGGGCGATGTTG | + |
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Preference number: 4 (lower is better) Translates to: ATWMCVLRSLGGSKSASLPKLPA*SCRAML Trigger: CAACATCGCCCTGCAGCTGCAGGCGGGCAGCTTTGG...AAGGGAGGCTGACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | CACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCAGCCTCCCTTCAGTAGGGACCCAAAGCTaGCCGCCTGCAGCTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: HMDVCAQKPWWVQVSLPSVGTQS*PPAAAG Trigger: CCCTGCAGCTGCAGGCGGGCAGCTTTGGGTCCCTAC...TGAAGGGAGGCTGACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR TCA 90 bp | CTCGGCCACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCAGCCTCTCGGATGTGGATGGCTaGGTTGTTCCTGACCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: LGHMDVCAQKPWWVQVSLSDVDG*VVPDPR Trigger: ACGAGGGTCAGGAACAACTCAGCCATCCACATCCGA...GAGGCTGACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTGGCCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | TATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGGTAGGGACCCAAAGCTaGCCGCCTGCAGCTGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: YTGQGRFTSRALHSQSSRVGTQS*PPAAAG Trigger: CCCTGCAGCTGCAGGCGGGCAGCTTTGGGTCCCTAC...CCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | GCCACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCAGCCTCCCTTTGGCAGCGAGCTAGCTaGGCCTTAAAGTCAGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ATWMCVLRSLGGSKSASLWQRAS*ALKSVF Trigger: GAAGACTGACTTTAAGGCCCAGCTAGCTCGCTGCCA...AAGGGAGGCTGACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | ATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGCCCACGGTGGAGGTATTaGCGGCCACCTGTAGGGACC | + |
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Preference number: 4 (lower is better) Translates to: IQDKEDSLLGLSILSPLGPRWRY*RPPVGT Trigger: GGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGG...GCCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | ATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTACTGCCCGCCTGCAGCTaGAGGGCGATGTTGATGGCC | + |
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Preference number: 4 (lower is better) Translates to: IIQDKEDSLLGLSILSPLLPACS*RAMLMA Trigger: GGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAG...TAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | CACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCAGCCTCCCTTCACTGAAGACTCGGATGTaGATGGCTGAGTTGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: HMDVCAQKPWWVQVSLPSLKTRM*MAELFL Trigger: CAGGAACAACTCAGCCATCCACATCCGAGTCTTCAG...TGAAGGGAGGCTGACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | ATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGCTGGCAGCGAGCTAGCTaGGCCTTAAAGTCAGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: IQDKEDSLLGLSILSPLGWQRAS*ALKSVF Trigger: GAAGACTGACTTTAAGGCCCAGCTAGCTCGCTGCCA...GCCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | TATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGGTAGATTTCAGTGCATaGGTTCTGCCCCCTAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: YTGQGRFTSRALHSQSSRVDFSA*VLPPSA Trigger: GGCACTAGGGGGCAGAACGCATGCACTGAAATCTAC...CCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR TCA 90 bp | CAGAACAAGAGCCACTATGAAGCACTAGAAACCTCGGCCACATGGATGTGTGTGAGTCAGTCTTCATGTTaGCATAAATGTCGTTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: QNKSHYEALETSATWMCVSQSSC*HKCRWA Trigger: GGCCCAACGACATTTATGTCAACATGAAGACTGACT...CACACACATCCATGTGGCCGAGGTTTCTAGTGCTTCATAGTGGCTCTTGTTCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR TCA 90 bp | GAGGCTCAGGACAGAACTCAGAACAAGAGCCACTATGAAGCACTAGAAACCTCGAGTCAGTCTTCATGTTaGCATAAATGTCGTTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: EAQDRTQNKSHYEALETSSQSSC*HKCRWA Trigger: GGCCCAACGACATTTATGTCAACATGAAGACTGACT...CGAGGTTTCTAGTGCTTCATAGTGGCTCTTGTTCTGAGTTCTGTCCTGAGCCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR GCA 90 bp | TATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTGTAGATTTCAGTGCATaGGTTCTGCCCCCTAGTGCC | + |
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Preference number: 4 (lower is better) Translates to: YYTGQGRFTSRALHSQSSVDFSA*VLPPSA Trigger: GGCACTAGGGGGCAGAACGCATGCACTGAAATCTAC...AGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | CACAACTTAATAATTTATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCCACGGTGGAGGTATTaGCGGCCACCTGTAGGGACC | + |
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Preference number: 4 (lower is better) Translates to: HNLIIYYTGQGRFTSRALPRWRY*RPPVGT Trigger: GGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGG...GAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAATAAATTATTAAGTTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | CACAACTTAATAATTTATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCCACCAGCTCCACGGTaGAGGTATTGGCGGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: HNLIIYYTGQGRFTSRALPPAPR*RYWRPP Trigger: AGGTGGCCGCCAATACCTCCACCGTGGAGCTGGTGG...GAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAATAAATTATTAAGTTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CCA 90 bp | TATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTCTGAAGACTCGGATGTaGATGGCTGAGTTGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: YYTGQGRFTSRALHSQSSLKTRM*MAELFL Trigger: CAGGAACAACTCAGCCATCCACATCCGAGTCTTCAG...AGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR TCA 90 bp | CACAACTTAATAATTTATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCTCGGATGTGGATGGCTaGGTTGTTCCTGACCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: HNLIIYYTGQGRFTSRALSDVDG*VVPDPR Trigger: ACGAGGGTCAGGAACAACTCAGCCATCCACATCCGA...GAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAATAAATTATTAAGTTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS GCA 90 bp | GTGGAGGTATTGGCGGCCACCTGTAGGGACCCAAAGCTGCCCGCCTaGAGCTGCAGGGCGATGTTGATGGCCCGGTTGATGGCCAGGCCC | + |
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Preference number: 5 (lower is better) Translates to: VEVLAATCRDPKLPA*SCRAMLMARLMARP Trigger: GGGCCTGGCCATCAACCGGGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAGCTTTGGGTCCCTACAGGTGGCCGCCAATACCTCCAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS GCA 90 bp | GTATTGGCGGCCACCTGTAGGGACCCAAAGCTGCCCGCCTGCAGCTaGAGGGCGATGTTGATGGCCCGGTTGATGGCCAGGCCCAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: VLAATCRDPKLPACS*RAMLMARLMARPKP Trigger: TGGCTTGGGCCTGGCCATCAACCGGGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAGCTTTGGGTCCCTACAGGTGGCCGCCAATAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CCA 90 bp | CCCGAGAGTCAGTCTCTGGCTCCAACTCGTCCACCAGCTCCACGGTaGAGGTATTGGCGGCCACCTGTAGGGACCCAAAGCTGCCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: PESQSLAPTRPPAPR*RYWRPPVGTQSCPP Trigger: AGGCGGGCAGCTTTGGGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGAGCTGGTGGACGAGTTGGAGCCAGAGACTGACTCTCGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS GCA 90 bp | CCGGTTGATGGCCAGGCCCAAGCCATGAATGTAGATTTCAGTGCATaGGTTCTGCCCCCTAGTGCCTCCGTCCAGGAGCTTTTGGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: PVDGQAQAMNVDFSA*VLPPSASVQELLAA Trigger: CGCTGCCAAAAGCTCCTGGACGGAGGCACTAGGGGGCAGAACGCATGCACTGAAATCTACATTCATGGCTTGGGCCTGGCCATCAACCGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CCA 90 bp | TCAGTGCATGCGTTCTGCCCCCTAGTGCCTCCGTCCAGGAGCTTTTaGCAGCGAGCTAGCTGGGCCTTAAAGTCAGTCTTCATGTTGACA | + |
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Preference number: 5 (lower is better) Translates to: SVHAFCPLVPPSRSF*QRASWALKSVFMLT Trigger: TGTCAACATGAAGACTGACTTTAAGGCCCAGCTAGCTCGCTGCCAAAAGCTCCTGGACGGAGGCACTAGGGGGCAGAACGCATGCACTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CAA 90 bp | ATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGCAGCTGCAGGGCGATGTaGATGGCCCGGTTGATGGCC | + |
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Preference number: 5 (lower is better) Translates to: IQDKEDSLLGLSILSPLGSCRAM*MARLMA Trigger: GGCCATCAACCGGGCCATCAACATCGCCCTGCAGCT...GCCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CAA 90 bp | CACATGGATGTGTGTGCTCAGAAGCCTTGGTGGGTCCAAGTCAGCCTCCCTTCAATGTGGATGGCTGAGTaGTTCCTGACCCTCGTCAGG | + |
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Preference number: 5 (lower is better) Translates to: HMDVCAQKPWWVQVSLPSMWMAE*FLTLVR Trigger: CCTGACGAGGGTCAGGAACAACTCAGCCATCCACAT...TGAAGGGAGGCTGACTTGGACCCACCAAGGCTTCTGAGCACACACATCCATGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CAA 90 bp | TATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGAGCTGCAGGGCGATGTaGATGGCCCGGTTGATGGCC | + |
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Preference number: 5 (lower is better) Translates to: YTGQGRFTSRALHSQSSRSCRAM*MARLMA Trigger: GGCCATCAACCGGGCCATCAACATCGCCCTGCAGCT...CCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CAA 90 bp | TATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTAGGTCCACGGTGGAGGTATaGGCGGCCACCTGTAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: YTGQGRFTSRALHSQSSRSTVEV*AATCRD Trigger: GTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGA...CCTAGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS-3UTR CAA 90 bp | TATTATACAGGACAAGGAAGATTCACTTCTCGGGCTCTCCATTCTCAGTCCTCTTCCACGGTGGAGGTATaGGCGGCCACCTGTAGGGAC | + |
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Preference number: 5 (lower is better) Translates to: YYTGQGRFTSRALHSQSSSTVEV*AATCRD Trigger: GTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGA...AGAGGACTGAGAATGGAGAGCCCGAGAAGTGAATCTTCCTTGTCCTGTATAATA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS GCA 72 bp | GCCACCTGTAGGGACCCAAAGCTGCCCGCCTGCAGCTaGAGGGCGATGTTGATGGCCCGGTTGATGGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: ATCRDPKLPACS*RAMLMARLMAR Trigger: CCTGGCCATCAACCGGGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAGCTTTGGGTCCCTACAGGTGGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CAA 72 bp | GGCTCCAACTCGTCCACCAGCTCCACGGTGGAGGTATaGGCGGCCACCTGTAGGGACCCAAAGCTGCCCGCC | + |
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Preference number: 6 (lower is better) Translates to: GSNSSTSSTVEV*AATCRDPKLPA Trigger: GGCGGGCAGCTTTGGGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGAGCTGGTGGACGAGTTGGAGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS GCA 72 bp | TTGGCGGCCACCTGTAGGGACCCAAAGCTGCCCGCCTaGAGCTGCAGGGCGATGTTGATGGCCCGGTTGATG | + |
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Preference number: 6 (lower is better) Translates to: LAATCRDPKLPA*SCRAMLMARLM Trigger: CATCAACCGGGCCATCAACATCGCCCTGCAGCTGCAGGCGGGCAGCTTTGGGTCCCTACAGGTGGCCGCCAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CCA 72 bp | GCTCCAACTCGTCCACCAGCTCCACGGTGGAGGTATTaGCGGCCACCTGTAGGGACCCAAAGCTGCCCGCCT | + |
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Preference number: 6 (lower is better) Translates to: APTRPPAPRWRY*RPPVGTQSCPP Trigger: AGGCGGGCAGCTTTGGGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGAGCTGGTGGACGAGTTGGAGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CCA 72 bp | CCTGACCCTCGTCAGGGGCTCCCGAGAGTCAGTCTCTaGCTCCAACTCGTCCACCAGCTCCACGGTGGAGGT | + |
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Preference number: 6 (lower is better) Translates to: PDPRQGLPRVSL*LQLVHQLHGGG Trigger: ACCTCCACCGTGGAGCTGGTGGACGAGTTGGAGCCAGAGACTGACTCTCGGGAGCCCCTGACGAGGGTCAGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CCA 72 bp | CAGTCTCTGGCTCCAACTCGTCCACCAGCTCCACGGTaGAGGTATTGGCGGCCACCTGTAGGGACCCAAAGC | + |
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Preference number: 6 (lower is better) Translates to: QSLAPTRPPAPR*RYWRPPVGTQS Trigger: GCTTTGGGTCCCTACAGGTGGCCGCCAATACCTCCACCGTGGAGCTGGTGGACGAGTTGGAGCCAGAGACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS TCA 72 bp | CTTGGGCGTGACCCTGAAGACTCGGATGTGGATGGCTaGGTTGTTCCTGACCCTCGTCAGGGGCTCCCGAGA | + |
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Preference number: 6 (lower is better) Translates to: LGRDPEDSDVDG*VVPDPRQGLPR Trigger: TCTCGGGAGCCCCTGACGAGGGTCAGGAACAACTCAGCCATCCACATCCGAGTCTTCAGGGTCACGCCCAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CAA 72 bp | GGCGTGACCCTGAAGACTCGGATGTGGATGGCTGAGTaGTTCCTGACCCTCGTCAGGGGCTCCCGAGAGTCA | + |
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Preference number: 6 (lower is better) Translates to: GVTLKTRMWMAE*FLTLVRGSRES Trigger: TGACTCTCGGGAGCCCCTGACGAGGGTCAGGAACAACTCAGCCATCCACATCCGAGTCTTCAGGGTCACGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS CCA 72 bp | GCGTTCTGCCCCCTAGTGCCTCCGTCCAGGAGCTTTTaGCAGCGAGCTAGCTGGGCCTTAAAGTCAGTCTTC | + |
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Preference number: 6 (lower is better) Translates to: AFCPLVPPSRSF*QRASWALKSVF Trigger: GAAGACTGACTTTAAGGCCCAGCTAGCTCGCTGCCAAAAGCTCCTGGACGGAGGCACTAGGGGGCAGAACGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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| CDS GCA 72 bp | GGCCAGGCCCAAGCCATGAATGTAGATTTCAGTGCATaGGTTCTGCCCCCTAGTGCCTCCGTCCAGGAGCTT | + |
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Preference number: 6 (lower is better) Translates to: GQAQAMNVDFSA*VLPPSASVQEL Trigger: AAGCTCCTGGACGGAGGCACTAGGGGGCAGAACGCATGCACTGAAATCTACATTCATGGCTTGGGCCTGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031728.5 ENSMUST00000111035.2 |
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