Pregenerated sensors for POP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060152Ensembl transcript IDs: ENSMUST00000081497.13, ENSMUST00000135455.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCAGTGCCCACCGCCTAGCAGTGTCTGCAGCAGTGCCTGATGTGTaGGATGCATCAGCTGTAGGTGAGAGAGGATGGACTGCTCCCGAG | + |
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Preference number: 1 (lower is better) Translates to: PSAHRLAVSAAVPDV*DASAVGERGWTAPE Trigger: CTCGGGAGCAGTCCATCCTCTCTCACCTACAGCTGATGCATCCCACACATCAGGCACTGCTGCAGACACTGCTAGGCGGTGGGCACTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR GCA 90 bp | GATGTTTCCCCACTGAACTGGGAAGGAAGCTGCTGCGTGAAAGGATaGTGTGGAGCCCTGGGTACACTATGGGGCAGAGTCCTCGTGCTA | + |
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Preference number: 1 (lower is better) Translates to: DVSPLNWEGSCCVKG*CGALGTLWGRVLVL Trigger: TAGCACGAGGACTCTGCCCCATAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 90 bp | TTCCCCACTGAACTGGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTaGAGCCCTGGGTACACTATGGGGCAGAGTCCTCGTGCTAGGTTT | + |
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Preference number: 1 (lower is better) Translates to: FPTELGRKLLRERML*SPGYTMGQSPRARF Trigger: AAACCTAGCACGAGGACTCTGCCCCATAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR GCA 90 bp | GACTGTAACCATGATGTTTCCCCACTGAACTGGGAAGGAAGCTGCTaGGTGAAAGGATGCTGTGGAGCCCTGGGTACACTATGGGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: DCNHDVSPLNWEGSC*VKGCCGALGTLWGR Trigger: TCTGCCCCATAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTTACAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR GCA 90 bp | ACAGACTGTAACCATGATGTTTCCCCACTGAACTGGGAAGGAAGCTaGTGCGTGAAAGGATGCTGTGGAGCCCTGGGTACACTATGGGGC | + |
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Preference number: 1 (lower is better) Translates to: TDCNHDVSPLNWEGS*CVKGCCGALGTLWG Trigger: GCCCCATAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTTACAGTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 90 bp | ACCATGGTTCTTACAGACTGTAACCATGATGTTTCCCCACTGAACTaGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTGGAGCCCTGGGT | + |
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Preference number: 1 (lower is better) Translates to: TMVLTDCNHDVSPLN*EGSCCVKGCCGALG Trigger: ACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTTACAGTCTGTAAGAACCATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 90 bp | CTAAGCAGTTACATCCGAAATGTCTGCACAGAGCCTTCACAACCATaGATGCAAGGTAAGGCAGCAAGCCCTCCACTTCAAGCTGGTCAC | + |
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Preference number: 1 (lower is better) Translates to: LSSYIRNVCTEPSQP*MQGKAASPPLQAGH Trigger: GTGACCAGCTTGAAGTGGAGGGCTTGCTGCCTTACCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGATGTAACTGCTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR CCA 90 bp | GTCTTCAGTCCTGACTGCCAGGGCATCGTGGCCACAACAGTGATCTaGATGTTTCTTCTGAAGTTGTCCATCCACAGAAAACCAGTCCAC | + |
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Preference number: 1 (lower is better) Translates to: VFSPDCQGIVATTVI*MFLLKLSIHRKPVH Trigger: GTGGACTGGTTTTCTGTGGATGGACAACTTCAGAAGAAACATCCAGATCACTGTTGTGGCCACGATGCCCTGGCAGTCAGGACTGAAGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR TCA 90 bp | AGGTATGCTGGGCCTTGGACATCAGTCATCAGTGAAGAACAGCCCTGCAGACTTGTGTGTCTTCAGTCCTaGCTGCCAGGGCATCGTGGC | + |
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Preference number: 2 (lower is better) Translates to: RYAGPWTSVISEEQPCRLVCLQS*LPGHRG Trigger: GCCACGATGCCCTGGCAGTCAGGACTGAAGACACAC...AAGTCTGCAGGGCTGTTCTTCACTGATGACTGATGTCCAAGGCCCAGCATACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | TCTACAGGAACTTCAGTGGCAGGAACGGGGGCTAGACCATGGTTCTTACAGACTGATGCTGTGGAGCCCTaGGTACACTATGGGGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: STGTSVAGTGARPWFLQTDAVEP*VHYGAE Trigger: CTCTGCCCCATAGTGTACCCAGGGCTCCACAGCATC...AGTCTGTAAGAACCATGGTCTAGCCCCCGTTCCTGCCACTGAAGTTCCTGTAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR TCA 90 bp | AGGAAGACTGACTTGGTGTGTGTCTTCAGTCCTGACTGCCAGGGCATCGTGGCCGTGTTAAAGGAGCTTTaGGAAGCCTCTTGTCTGCGT | + |
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Preference number: 2 (lower is better) Translates to: RKTDLVCVFSPDCQGIVAVLKEL*EASCLR Trigger: ACGCAGACAAGAGGCTTCTCAAAGCTCCTTTAACAC...GGCCACGATGCCCTGGCAGTCAGGACTGAAGACACACACCAAGTCAGTCTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | TCTACAGGAACTTCAGTGGCAGGAACGGGGGCTAGACCATGGTTCTTACAGACTGTAGGTGAGAGAGGATaGACTGCTCCCGAGGACTCT | + |
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Preference number: 2 (lower is better) Translates to: STGTSVAGTGARPWFLQTVGERG*TAPEDS Trigger: AGAGTCCTCGGGAGCAGTCCATCCTCTCTCACCTAC...AGTCTGTAAGAACCATGGTCTAGCCCCCGTTCCTGCCACTGAAGTTCCTGTAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCTTGCTGTGGTTGCATGCCGGTGTTAAAGGAGCTTTGAGAAGCCTCTTGTCCATTGGAGAACTGTaGGATGCTGCTGTCACCTCC | + |
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Preference number: 2 (lower is better) Translates to: AVLLWLHAGVKGALRSLLSIGEL*DAAVTS Trigger: GGAGGTGACAGCAGCATCCCACAGTTCTCCAATGGA...CAAGAGGCTTCTCAAAGCTCCTTTAACACCGGCATGCAACCACAGCAAGACAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | AGGTATGCTGGGCCTTGGACATCAGTCATCAGTGAAGAACAGCCCTGCAGACTTAGCATTGGGTGGGTGTaGAAGGACCTGCTACTAGGA | + |
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Preference number: 2 (lower is better) Translates to: RYAGPWTSVISEEQPCRLSIGWV*KDLLLG Trigger: TCCTAGTAGCAGGTCCTTCCACACCCACCCAATGCT...AAGTCTGCAGGGCTGTTCTTCACTGATGACTGATGTCCAAGGCCCAGCATACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | AGGTATGCTGGGCCTTGGACATCAGTCATCAGTGAAGAACAGCCCTGCAGACTTCGTGAAAGGATGCTGTaGAGCCCTGGGTACACTATG | + |
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Preference number: 2 (lower is better) Translates to: RYAGPWTSVISEEQPCRLRERML*SPGYTM Trigger: CATAGTGTACCCAGGGCTCCACAGCATCCTTTCACG...AAGTCTGCAGGGCTGTTCTTCACTGATGACTGATGTCCAAGGCCCAGCATACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGACTGTAACCATGATGTTTCCCCACTGAACTGGGAAGGAAGCTGCTGCGTGTCAAGTAGCATTGGGTaGGTGTGGAAGGACCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: TDCNHDVSPLNWEGSCCVSSSIG*VWKDLL Trigger: TAGCAGGTCCTTCCACACCCACCCAATGCTACTTGA...CACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTTACAGTCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAGTTACATCCGAAATGTCTGCACAGAGCCTTCACAACCATGGATGCAAGGTTCCATTGGAGAACTGTaGGATGCTGCTGTCACCTCC | + |
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Preference number: 2 (lower is better) Translates to: SSYIRNVCTEPSQPWMQGSIGEL*DAAVTS Trigger: GGAGGTGACAGCAGCATCCCACAGTTCTCCAATGGA...ACCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGATGTAACTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR-3UTR TCA 90 bp | ACAGACTGTAACCATGATGTTTCCCCACTGAACTGGGAAGGAAGCTGCTGCGTGTCTGGATGTTTCTTCTaGAGTTGTCCATCCACAGAA | + |
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Preference number: 2 (lower is better) Translates to: TDCNHDVSPLNWEGSCCVSGCFF*SCPSTE Trigger: TTCTGTGGATGGACAACTTCAGAAGAAACATCCAGA...CACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTTACAGTCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR GCA 90 bp | AAGCAGTTACATCCGAAATGTCTGCACAGAGCCTTCACAACCATGGATGCAAGGAGCTGGTCACCTGAGTaGTGGTTATCAGTCATTTCC | + |
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Preference number: 2 (lower is better) Translates to: KQLHPKCLHRAFTTMDARSWSPE*WLSVIS Trigger: GGAAATGACTGATAACCAGCACTCAGGTGACCAGCT...CCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGATGTAACTGCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR-3UTR CCA 90 bp | AGGTATGCTGGGCCTTGGACATCAGTCATCAGTGAAGAACAGCCCTGCAGACTTGCCACAACAGTGATCTaGATGTTTCTTCTGAAGTTG | + |
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Preference number: 2 (lower is better) Translates to: RYAGPWTSVISEEQPCRLATTVI*MFLLKL Trigger: CAACTTCAGAAGAAACATCCAGATCACTGTTGTGGC...AAGTCTGCAGGGCTGTTCTTCACTGATGACTGATGTCCAAGGCCCAGCATACCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTTAGACAGTCTTGCTATATCACTGGCTGTGAACTCACTGGTGCACCTGCCTATCAGTCATTTCCATTaGAGAACTGTGGGATGCTGC | + |
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Preference number: 2 (lower is better) Translates to: FLDSLAISLAVNSLVHLPISHFH*RTVGCC Trigger: GCAGCATCCCACAGTTCTCCAATGGAAATGACTGAT...AGGCAGGTGCACCAGTGAGTTCACAGCCAGTGATATAGCAAGACTGTCTAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CCA 90 bp | GTGCACATTTTATGGTTTAGGAATGTTTATTCCACCCCTGAGCTAAGCAGTTACATCAGTCATTTCCATTaGAGAACTGTGGGATGCTGC | + |
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Preference number: 2 (lower is better) Translates to: VHILWFRNVYSTPELSSYISHFH*RTVGCC Trigger: GCAGCATCCCACAGTTCTCCAATGGAAATGACTGAT...GTAACTGCTTAGCTCAGGGGTGGAATAAACATTCCTAAACCATAAAATGTGCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR GCA 72 bp | GGGCCTTGGACATCAGTCATCAGTGAAGAACAGCCCTaGAGACTTGCCTACAGGCAGGCCAGTCCTACGGAG | + |
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Preference number: 3 (lower is better) Translates to: GPWTSVISEEQP*RLAYRQASPTE Trigger: CTCCGTAGGACTGGCCTGCCTGTAGGCAAGTCTGCAGGGCTGTTCTTCACTGATGACTGATGTCCAAGGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | GAACTGGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTaGAGCCCTGGGTACACTATGGGGCAGAGTCCTCGT | + |
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Preference number: 3 (lower is better) Translates to: ELGRKLLRERML*SPGYTMGQSPR Trigger: ACGAGGACTCTGCCCCATAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | CACCGCCTAGCAGTGTCTGCAGCAGTGCCTGATGTGTaGGATGCATCAGCTGTAGGTGAGAGAGGATGGACT | + |
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Preference number: 3 (lower is better) Translates to: HRLAVSAAVPDV*DASAVGERGWT Trigger: AGTCCATCCTCTCTCACCTACAGCTGATGCATCCCACACATCAGGCACTGCTGCAGACACTGCTAGGCGGTG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | TGCGTGAAAGGATGCTGTGGAGCCCTGGGTACACTATaGGGCAGAGTCCTCGTGCTAGGTTTAGTTTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: CVKGCCGALGTL*GRVLVLGLVWQ Trigger: CTGCCAAACTAAACCTAGCACGAGGACTCTGCCCCATAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR GCA 72 bp | CATGATGTTTCCCCACTGAACTGGGAAGGAAGCTGCTaGGTGAAAGGATGCTGTGGAGCCCTGGGTACACTA | + |
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Preference number: 3 (lower is better) Translates to: HDVSPLNWEGSC*VKGCCGALGTL Trigger: TAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR GCA 72 bp | AACCATGATGTTTCCCCACTGAACTGGGAAGGAAGCTaGTGCGTGAAAGGATGCTGTGGAGCCCTGGGTACA | + |
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Preference number: 3 (lower is better) Translates to: NHDVSPLNWEGS*CVKGCCGALGT Trigger: TGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR-3UTR CAA 90 bp | AACTGGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTGGAGCCCTGGGTACACTAGGTGTTAAAGGAGCTTaGAGAAGCCTCTTGTCTGCG | + |
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Preference number: 3 (lower is better) Translates to: NWEGSCCVKGCCGALGTLGVKGA*RSLLSA Trigger: CGCAGACAAGAGGCTTCTCAAAGCTCCTTTAACACC...TAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR GCA 72 bp | TCCGAAATGTCTGCACAGAGCCTTCACAACCATGGATaGAAGGTAAGGCAGCAAGCCCTCCACTTCAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: SEMSAQSLHNHG*KVRQQALHFKL Trigger: CAGCTTGAAGTGGAGGGCTTGCTGCCTTACCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR CCA 72 bp | ACAGGAACTTCAGTGGCAGGAACGGGGGCTAGACCATaGTTCTTACAGACTGTAACCATGATGTTTCCCCAC | + |
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Preference number: 3 (lower is better) Translates to: TGTSVAGTGARP*FLQTVTMMFPH Trigger: GTGGGGAAACATCATGGTTACAGTCTGTAAGAACCATGGTCTAGCCCCCGTTCCTGCCACTGAAGTTCCTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | AGCAAGCCCTCCACTTCAAGCTGGTCACCTGAGTGCTaGTTATCAGTCATTTCCATTGGAGAACTGTGGGAT | + |
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Preference number: 3 (lower is better) Translates to: SKPSTSSWSPEC*LSVISIGELWD Trigger: ATCCCACAGTTCTCCAATGGAAATGACTGATAACCAGCACTCAGGTGACCAGCTTGAAGTGGAGGGCTTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR CCA 72 bp | TACATCCGAAATGTCTGCACAGAGCCTTCACAACCATaGATGCAAGGTAAGGCAGCAAGCCCTCCACTTCAA | + |
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Preference number: 3 (lower is better) Translates to: YIRNVCTEPSQP*MQGKAASPPLQ Trigger: TTGAAGTGGAGGGCTTGCTGCCTTACCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGATGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR CCA 72 bp | CTCAGAGTGAAAGTGTCAAGTAGCATTGGGTGGGTGTaGAAGGACCTGCTACTAGGAAAGAGAGAGACAAGG | + |
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Preference number: 3 (lower is better) Translates to: LRVKVSSSIGWV*KDLLLGKRETR Trigger: CCTTGTCTCTCTCTTTCCTAGTAGCAGGTCCTTCCACACCCACCCAATGCTACTTGACACTTTCACTCTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | CTTACAGACTGTAACCATGATGTTTCCCCACTGAACTaGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: LTDCNHDVSPLN*EGSCCVKGCCG Trigger: TCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTTCAGTGGGGAAACATCATGGTTACAGTCTGTAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | GAGTGCTGGTTATCAGTCATTTCCATTGGAGAACTGTaGGATGCTGCTGTCACCTCCTGTAATGTCCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: ECWLSVISIGEL*DAAVTSCNVLF Trigger: GAACAGGACATTACAGGAGGTGACAGCAGCATCCCACAGTTCTCCAATGGAAATGACTGATAACCAGCACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | ACACTATGGGGCAGAGTCCTCGTGCTAGGTTTAGTTTaGCAGGTTTGGCAATTGTGGATTTCTAAAGCAAGA | + |
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Preference number: 3 (lower is better) Translates to: TLWGRVLVLGLV*QVWQLWISKAR Trigger: TCTTGCTTTAGAAATCCACAATTGCCAAACCTGCCAAACTAAACCTAGCACGAGGACTCTGCCCCATAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CCA 72 bp | TCCACAGAAAACCAGTCCACAGCAACCATCTCAGCTTaGAGAGCTAGCAAGCCTTTCTGTTTTTATTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: STENQSTATISA*RASKPFCFYFL Trigger: TAAGAAATAAAAACAGAAAGGCTTGCTAGCTCTCCAAGCTGAGATGGTTGCTGTGGACTGGTTTTCTGTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR GCA 90 bp | CGAGGACTCTGTAGAGGAAGACTGACTTGGTGTGTGTCTTCAGTCCTGACTGCCGCGCCGAAGGCCCCGTaGACCCGGGCGATCGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: RGLCRGRLTWCVSSVLTAAPKAP*TRAIVS Trigger: CGACACGATCGCCCGGGTGCACGGGGCCTTCGGCGC...GGCAGTCAGGACTGAAGACACACACCAAGTCAGTCTTCCTCTACAGAGTCCTCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR GCA 90 bp | GCTAAGCAGTTACATCCGAAATGTCTGCACAGAGCCTTCACAACCATGGATGCAGCGCCGAAGGCCCCGTaGACCCGGGCGATCGTGTCG | + |
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Preference number: 4 (lower is better) Translates to: AKQLHPKCLHRAFTTMDAAPKAP*TRAIVS Trigger: CGACACGATCGCCCGGGTGCACGGGGCCTTCGGCGC...TGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGATGTAACTGCTTAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS-3UTR TCA 90 bp | AGGAAGACTGACTTGGTGTGTGTCTTCAGTCCTGACTGCCAGGGCATCGTGGCCCCACGTGTAATGTGTTaGAGAAGCACGGGTAACGGT | + |
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Preference number: 4 (lower is better) Translates to: RKTDLVCVFSPDCQGIVAPRVMC*RSTGNG Trigger: ACCGTTACCCGTGCTTCTTCAACACATTACACGTGG...GGCCACGATGCCCTGGCAGTCAGGACTGAAGACACACACCAAGTCAGTCTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR TCA 90 bp | GTGTCTGCAGCAGTGCCTGATGTGTGGGATGCATCAGCTGTAGGTGAGAGAGGATTGAGACAGACTTCTTaGTGGCTTCCCGCTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VSAAVPDVWDASAVGERGLRQTS*WLPALL Trigger: AAGGAGAGCGGGAAGCCATCAAGAAGTCTGTCTCAA...TCCTCTCTCACCTACAGCTGATGCATCCCACACATCAGGCACTGCTGCAGACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR GCA 90 bp | AACTGGGAAGGAAGCTGCTGCGTGAAAGGATGCTGTGGAGCCCTGGGTACACTATCACTCCATTGCTTCTaGAACCTCCTCACCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: NWEGSCCVKGCCGALGTLSLHCF*NLLTST Trigger: AGTGCTGGTGAGGAGGTTGCAGAAGCAATGGAGTGA...TAGTGTACCCAGGGCTCCACAGCATCCTTTCACGCAGCAGCTTCCTTCCCAGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| 3UTR CAA 72 bp | GTCTTGCTGTGGTTGCATGCCGGTGTTAAAGGAGCTTaGAGAAGCCTCTTGTCTGCGTTCACTGGTGTAGGC | + |
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Preference number: 4 (lower is better) Translates to: VLLWLHAGVKGA*RSLLSAFTGVG Trigger: GCCTACACCAGTGAACGCAGACAAGAGGCTTCTCAAAGCTCCTTTAACACCGGCATGCAACCACAGCAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR TCA 90 bp | GAAATGTCTGCACAGAGCCTTCACAACCATGGATGCAAGGTAAGGCAGCAAGCCTTGAGACAGACTTCTTaGTGGCTTCCCGCTCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: EMSAQSLHNHGCKVRQQALRQTS*WLPALL Trigger: AAGGAGAGCGGGAAGCCATCAAGAAGTCTGTCTCAA...GGCTTGCTGCCTTACCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS-3UTR GCA 90 bp | TGGATGCAAGGTAAGGCAGCAAGCCCTCCACTTCAAGCTGGTCACCTGAGTGCTTCGTCAGTGCAATTCTaGAACAAGATCAGCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: WMQGKAASPPLQAGHLSASSVQF*NKISSC Trigger: ACAGCTGCTGATCTTGTTGCAGAATTGCACTGACGA...AGCACTCAGGTGACCAGCTTGAAGTGGAGGGCTTGCTGCCTTACCTTGCATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR CAA 72 bp | GTGAGGGGTGTAGCATTTCCTAAGGAAAGGGCTGTCTaGCTGTGGTTGCATGCCGGTGTTAAAGGAGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: VRGVAFPKERAV*LWLHAGVKGAL Trigger: CAAAGCTCCTTTAACACCGGCATGCAACCACAGCAAGACAGCCCTTTCCTTAGGAAATGCTACACCCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR GCA 90 bp | CGAGGACTCTGTAGAGGAAGACTGACTTGGTGTGTGTCTTCAGTCCTGACTGCCTCGTCAGTGCAATTCTaGAACAAGATCAGCAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: RGLCRGRLTWCVSSVLTASSVQF*NKISSC Trigger: ACAGCTGCTGATCTTGTTGCAGAATTGCACTGACGA...GGCAGTCAGGACTGAAGACACACACCAAGTCAGTCTTCCTCTACAGAGTCCTCG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR GCA 90 bp | CCTCCACTTCAAGCTGGTCACCTGAGTGCTGGTTATCAGTCATTTCCATTGGAGTCACTCCATTGCTTCTaGAACCTCCTCACCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: PPLQAGHLSAGYQSFPLESLHCF*NLLTST Trigger: AGTGCTGGTGAGGAGGTTGCAGAAGCAATGGAGTGA...CTCCAATGGAAATGACTGATAACCAGCACTCAGGTGACCAGCTTGAAGTGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| 3UTR CAA 72 bp | GTAGCATTTCCTAAGGAAAGGGCTGTCTTGCTGTGGTaGCATGCCGGTGTTAAAGGAGCTTTGAGAAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: VAFPKERAVLLW*HAGVKGALRSL Trigger: GAGGCTTCTCAAAGCTCCTTTAACACCGGCATGCAACCACAGCAAGACAGCCCTTTCCTTAGGAAATGCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR TCA 90 bp | ACTTCAAGCTGGTCACCTGAGTGCTGGTTATCAGTCATTTCCATTGGAGAACTGCAGCAGACAGCTTCTTaGGACAGACTTCTTGATGGC | + |
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Preference number: 4 (lower is better) Translates to: TSSWSPECWLSVISIGELQQTAS*DRLLDG Trigger: GCCATCAAGAAGTCTGTCTCAAGAAGCTGTCTGCTG...CAGTTCTCCAATGGAAATGACTGATAACCAGCACTCAGGTGACCAGCTTGAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS-3UTR GCA 90 bp | AAGCAGTTACATCCGAAATGTCTGCACAGAGCCTTCACAACCATGGATGCAAGGGCTCTCCTTCGTCAGTaGAATTCTGCAACAAGATCA | + |
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Preference number: 4 (lower is better) Translates to: KQLHPKCLHRAFTTMDARALLRQ*NSATRS Trigger: TGATCTTGTTGCAGAATTGCACTGACGAAGGAGAGC...CCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTCGGATGTAACTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS-3UTR TCA 90 bp | GTGCACATTTTATGGTTTAGGAATGTTTATTCCACCCCTGAGCTAAGCAGTTACCCACGTGTAATGTGTTaGAGAAGCACGGGTAACGGT | + |
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Preference number: 4 (lower is better) Translates to: VHILWFRNVYSTPELSSYPRVMC*RSTGNG Trigger: ACCGTTACCCGTGCTTCTTCAACACATTACACGTGG...GTAACTGCTTAGCTCAGGGGTGGAATAAACATTCCTAAACCATAAAATGTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS GCA 90 bp | CGGACTGCAAAGCCCACGGAGCAGGCGGCGGCGCCGAAGGCCCCGTaGACCCGGGCGATCGTGTCGCGGACCAGCCCGCCCAGCACGCGG | + |
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Preference number: 5 (lower is better) Translates to: RTAKPTEQAAAPKAP*TRAIVSRTSPPSTR Trigger: CCGCGTGCTGGGCGGGCTGGTCCGCGACACGATCGCCCGGGTGCACGGGGCCTTCGGCGCCGCCGCCTGCTCCGTGGGCTTTGCAGTCCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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| CDS TCA 90 bp | AGAAATCCTTCCGGCATCGCAGTAGCACGACTCCAGTGTAGGCATTaGGGTATCGGACTGCAAAGCCCACGGAGCAGGCGGCGGCGCCGA | + |
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Preference number: 5 (lower is better) Translates to: RNPSGIAVARLQCRH*GIGLQSPRSRRRRR Trigger: TCGGCGCCGCCGCCTGCTCCGTGGGCTTTGCAGTCCGATACCTCAATGCCTACACTGGAGTCGTGCTACTGCGATGCCGGAAGGATTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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| CDS-3UTR CAA 90 bp | TCTACAGGAACTTCAGTGGCAGGAACGGGGGCTAGACCATGGTTCTTACAGACTCTTGAGACAGACTTCTaGATGGCTTCCCGCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: STGTSVAGTGARPWFLQTLETDF*MASRSP Trigger: AGGAGAGCGGGAAGCCATCAAGAAGTCTGTCTCAAG...AGTCTGTAAGAACCATGGTCTAGCCCCCGTTCCTGCCACTGAAGTTCCTGTAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR CAA 90 bp | GAAATGTCTGCACAGAGCCTTCACAACCATGGATGCAAGGTAAGGCAGCAAGCCAGCAGCTGTCTCCTGTaGTACTGGATCAGGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: EMSAQSLHNHGCKVRQQASSCLL*YWIRNF Trigger: GAAGTTCCTGATCCAGTACAACAGGAGACAGCTGCT...GGCTTGCTGCCTTACCTTGCATCCATGGTTGTGAAGGCTCTGTGCAGACATTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS-3UTR CAA 90 bp | TCTACAGGAACTTCAGTGGCAGGAACGGGGGCTAGACCATGGTTCTTACAGACTAGCAGCTGTCTCCTGTaGTACTGGATCAGGAACTTC | + |
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Preference number: 5 (lower is better) Translates to: STGTSVAGTGARPWFLQTSSCLL*YWIRNF Trigger: GAAGTTCCTGATCCAGTACAACAGGAGACAGCTGCT...AGTCTGTAAGAACCATGGTCTAGCCCCCGTTCCTGCCACTGAAGTTCCTGTAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135455.2 |
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| CDS-3UTR CAA 90 bp | GTGCACATTTTATGGTTTAGGAATGTTTATTCCACCCCTGAGCTAAGCAGTTACCTTGAGACAGACTTCTaGATGGCTTCCCGCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: VHILWFRNVYSTPELSSYLETDF*MASRSP Trigger: AGGAGAGCGGGAAGCCATCAAGAAGTCTGTCTCAAG...GTAACTGCTTAGCTCAGGGGTGGAATAAACATTCCTAAACCATAAAATGTGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000081497.13 |
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| CDS GCA 72 bp | AAGCCCACGGAGCAGGCGGCGGCGCCGAAGGCCCCGTaGACCCGGGCGATCGTGTCGCGGACCAGCCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: KPTEQAAAPKAP*TRAIVSRTSPP Trigger: GGGCGGGCTGGTCCGCGACACGATCGCCCGGGTGCACGGGGCCTTCGGCGCCGCCGCCTGCTCCGTGGGCTT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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| CDS GCA 72 bp | TTGATGGCTTCCCGCTCTCCTTCGTCAGTGCAATTCTaGAACAAGATCAGCAGCTGTCTCCTGTTGTACTGG | + |
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Preference number: 6 (lower is better) Translates to: LMASRSPSSVQF*NKISSCLLLYW Trigger: CCAGTACAACAGGAGACAGCTGCTGATCTTGTTGCAGAATTGCACTGACGAAGGAGAGCGGGAAGCCATCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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| CDS TCA 72 bp | GCCTTTGTTCTCCAAATAGGTGATGAAAGGAAGAGCTaGCCACACGAGCTGGTAGAAATCCTTCCGGCATCG | + |
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Preference number: 6 (lower is better) Translates to: AFVLQIGDERKS*PHELVEILPAS Trigger: CGATGCCGGAAGGATTTCTACCAGCTCGTGTGGTCAGCTCTTCCTTTCATCACCTATTTGGAGAACAAAGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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| CDS TCA 72 bp | AGCAGCTGTCTCCTGTTGTACTGGATCAGGAACTTCTaGCAGGTTCTGATGGTACCTCCCACGTGTAATGTG | + |
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Preference number: 6 (lower is better) Translates to: SSCLLLYWIRNF*QVLMVPPTCNV Trigger: CACATTACACGTGGGAGGTACCATCAGAACCTGTCAGAAGTTCCTGATCCAGTACAACAGGAGACAGCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081497.13 ENSMUST00000135455.2 |
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