RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022325

Ensembl transcript IDs: ENSMUST00000052290.14, ENSMUST00000079028.6

Found 244 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCTTCCTGCCCAGCTATaGGCGGCCCTGCGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARLPAQL*AALRPG
Trigger: GCCAGGCCGCAGGGCCGCCCATAGCTGGGCAGGAAG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGCTATGGGCGGCCCTaGGGCCTGGCCCTCGGAGGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSYGRP*GLALGG
Trigger: GCCTCCGAGGGCCAGGCCGCAGGGCCGCCCATAGCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGGCGGCCCTGCGGCCTaGCCCTCGGAGGCTCTGTGT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGGGPAA*PSEALC
Trigger: ACACAGAGCCTCCGAGGGCCAGGCCGCAGGGCCGCC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGGCTCGGTGGCTCTTaGCCGTGGGCCTCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARRLGGS*PWASPQ
Trigger: TTGGGGAGAGGCCCACGGCCAAGAGCCACCGAGCCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTTCCTGCCCAGCTATaGGCGGCCCTGCGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLPAQL*AALRPG
Trigger: GCCAGGCCGCAGGGCCGCCCATAGCTGGGCAGGAAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCCCAGCCCTTGGGAATaGGGACATCCCAGCCACTGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARPSPWE*GHPSHC
Trigger: GCAGTGGCTGGGATGTCCTCATTCCCAAGGGCTGGG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCCTGACCACAGCCCCTaGGTCAGAGCTTCCTGCCCA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARPDHSP*VRASCP
Trigger: TGGGCAGGAAGCTCTGACGCAGGGGCTGTGGTCAGG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGTCCCCTCCTGCGCTTaGCAGCCTGTAACTTCTGGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARVPSCA*QPVTSG
Trigger: GCCAGAAGTTACAGGCTGTCAAGCGCAGGAGGGGAC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGGCTCGGTGGCTCTTaGCCGTGGGCCTCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGRLGGS*PWASPQ
Trigger: TTGGGGAGAGGCCCACGGCCAAGAGCCACCGAGCCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGACAGAGGCTTCCAATaGGCACAAGACCAGCTGCCG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARDRGFQ*AQDQLP
Trigger: CGGCAGCTGGTCTTGTGCTCATTGGAAGCCTCTGTC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCCCAGCCCTTGGGAATaGGGACATCCCAGCCACTGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGPSPWE*GHPSHC
Trigger: GCAGTGGCTGGGATGTCCTCATTCCCAAGGGCTGGG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAAACCGATACTGCAGTaGGGTTGGAGGCCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARKPILQ*GWRPQQ
Trigger: CTGCTGCGGCCTCCAACCTCACTGCAGTATCGGTTT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGCATGAGGCTCCCTTaGCGCTTCCCAGACAAGCAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSMRLP*RFPDKQ
Trigger: CTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGAGCACAAGACCAGCTaGCGGTGCACATCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETAREHKTS*RCTSLP
Trigger: AGGAAGGGATGTGCACCGGCAGCTGGTCTTGTGCTC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGAAGCTGTGTGCACATaGCACAGGCACACCCTCCAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETAREAVCT*HRHTLQ
Trigger: CTGGAGGGTGTGCCTGTGGCATGTGCACACAGCTTC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCCTGACCACAGCCCCTaGGTCAGAGCTTCCTGCCCA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGPDHSP*VRASCP
Trigger: TGGGCAGGAAGCTCTGACGCAGGGGCTGTGGTCAGG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGCACCAGGCCCCTCATaGCTGCTGACTGGCTGGACA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGAPGPS*LLTGWT
Trigger: TGTCCAGCCAGTCAGCAGCCATGAGGGGCCTGGTGC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCTTGGGTCAGTCTCCTaGGCACCAGGCATTGAAGCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARLGSVS*APGIEA
Trigger: AGCTTCAATGCCTGGTGCTCAGGAGACTGACCCAAG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGTCCCCTCCTGCGCTTaGCAGCCTGTAACTTCTGGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGVPSCA*QPVTSG
Trigger: GCCAGAAGTTACAGGCTGTCAAGCGCAGGAGGGGAC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGGATCTCCTGAGAAGTaGCCTCAGGACCTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARGSPEK*PQDLLS
Trigger: GGAAAGCAGGTCCTGAGGGCACTTCTCAGGAGATCC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGGCAGAGGTTTGTCATaGCTCGATAGCAGGCTCGGT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARGRGLS*LDSRLG
Trigger: ACCGAGCCTGCTATCGAGCCATGACAAACCTCTGCC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTCCAGCACGGCAGTCTaGGAAATCGCCTGGGATGTT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSSTAV*EIAWDV
Trigger: AACATCCCAGGCGATTTCCCAGACTGCCGTGCTGGA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGATTCCATGGCCACTTTaGTCCCCTCCTGCGCTTGAC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARIPWPL*SPPALD
Trigger: GTCAAGCGCAGGAGGGGACCAAAGTGGCCATGGAAT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCATGGTGTGAGGCTCTaGGCTGCCCTTCCTGAGCAG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGHGVRL*AALPEQ
Trigger: CTGCTCAGGAAGGGCAGCCCAGAGCCTCACACCATG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGATGGGTCGCTGTGTCTaGATTCCCAGGGTCCATGGT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARMGRCV*IPRVHG
Trigger: ACCATGGACCCTGGGAATCCAGACACAGCGACCCAT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGCCTAGGAGGAGCCTaGAGCAGTGTGAGGTTAGTC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSLGGA*SSVRLV
Trigger: GACTAACCTCACACTGCTCCAGGCTCCTCCTAGGCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGTGGGGACTCATCTTaGTTTGCCACTGCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSGDSS*FATALR
Trigger: CCTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGCAGCCCTCAGTGCTaGGGTCAGGATACAGTGCGA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSSPQC*GQDTVR
Trigger: TCGCACTGTATCCTGACCTCAGCACTGAGGGCTGCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTATCCTGGTCCCAGATaGAGCTGTGTGCACATGCCA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARYPGPR*SCVHMP
Trigger: TGGCATGTGCACACAGCTTCATCTGGGACCAGGATA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTAGTCAGTTCTTGCTaGGCTCTGCAGGGAGCCCTC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLVSSC*ALQGAL
Trigger: GAGGGCTCCCTGCAGAGCTCAGCAAGAACTGACTAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCACACAGATCATGGTGTaGGGCTCTGGGCTGCCCTTC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGTQIMV*GSGLPF
Trigger: GAAGGGCAGCCCAGAGCCTCACACCATGATCTGTGT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAAACCGATACTGCAGTaGGGTTGGAGGCCGCAGCAG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGKPILQ*GWRPQQ
Trigger: CTGCTGCGGCCTCCAACCTCACTGCAGTATCGGTTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGTGCCCTCAGGACCTaGTTTCCAGCCTCCCTTTTT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSALRT*FPASLF
Trigger: AAAAAGGGAGGCTGGAAAGCAGGTCCTGAGGGCACT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGACCATCAGAGCTCCTaGAAGTGTCAGTCCACCAGT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARDHQSS*KCQSTS
Trigger: ACTGGTGGACTGACACTTGCAGGAGCTCTGATGGTC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAAGACCAGCTGCCGGTaGACATCCCTTCCTCACAGG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGKTSCR*TSLPHR
Trigger: CCTGTGAGGAAGGGATGTGCACCGGCAGCTGGTCTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCCCTCCAGAAGCAGCTaGTTCACTCGCTCATTAGCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARPSRSS*FTRSLA
Trigger: AGCTAATGAGCGAGTGAAGCAGCTGCTTCTGGAGGG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGAAGCTGTGTGCACATaGCACAGGCACACCCTCCAG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGEAVCT*HRHTLQ
Trigger: CTGGAGGGTGTGCCTGTGGCATGTGCACACAGCTTC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGGCTGGTGTCAGGAGTaGGTCAGGCATGCAGATATT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARGWCQE*VRHADI
Trigger: AATATCTGCATGCCTGACCCACTCCTGACACCAGCC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTTGGGCATGAACCCTaGACTCCCAGTCCCGAGTCA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLGHEP*TPSPES
Trigger: TGACTCGGGACTGGGAGTCCAGGGTTCATGCCCAAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTCTGGCTTCCTGGGTTaGTTTTCAGCTATGCCTGCC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSGFLG*FSAMPA
Trigger: GGCAGGCATAGCTGAAAACCAACCCAGGAAGCCAGA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTGGCATTCCATTCCATaGCCACTTTGGTCCCCTCCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARWHSIP*PLWSPP
Trigger: AGGAGGGGACCAAAGTGGCCATGGAATGGAATGCCA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGATTTGCCACTGCCTTaGGGTTCCAGAATGAAGCTC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARDLPLP*GSRMKL
Trigger: GAGCTTCATTCTGGAACCTCAAGGCAGTGGCAAATC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTACTTGGGGATCTCCTaGGAAGTGCCCTCAGGACCT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGYLGIS*EVPSGP
Trigger: AGGTCCTGAGGGCACTTCTCAGGAGATCCCCAAGTA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTCAGCGGCTCGTGCTTaGGCAAAAGTAGAAGCAGTT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSAARA*AKVEAV
Trigger: AACTGCTTCTACTTTTGCTCAAGCACGAGCCGCTGA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCACTTCTTCACCATATaGAACCGTTTGGCGTGCCAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARHFFTI*NRLACQ
Trigger: CTGGCACGCCAAACGGTTTCATATGGTGAAGAAGTG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTCCCAGACAAGCAGTaGACTGCAGCAAAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARFPDKQ*TAAKVR
Trigger: CCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGGAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAAAAATCTCCCTGTGTaGCAAAGCCTAGGAGGAGCC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARKNLPV*QSLGGA
Trigger: GGCTCCTCCTAGGCTTTGTCACACAGGGAGATTTTT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGGATCTCCTGAGAAGTaGCCTCAGGACCTGCTTTCC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGGSPEK*PQDLLS
Trigger: GGAAAGCAGGTCCTGAGGGCACTTCTCAGGAGATCC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGACAAGCAGTGAACTaGAGCAAAAGTCAGGCCTGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARRQAVN*SKSQAC
Trigger: GCAGGCCTGACTTTTGCTGCAGTTCACTGCTTGTCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGGCAGAGGTTTGTCATaGCTCGATAGCAGGCTCGGT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGGRGLS*LDSRLG
Trigger: ACCGAGCCTGCTATCGAGCCATGACAAACCTCTGCC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGCCCAAGCATTTCCCTaGGATACTTATTTGCCCGGT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARAQAFP*DTYLPG
Trigger: ACCGGGCAAATAAGTATCCCAGGGAAATGCTTGGGC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCTCAGAAGCATCCTCTaGGGTCATCCTAGACTTCCA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARLRSIL*GHPRLP
Trigger: TGGAAGTCTAGGATGACCCCAGAGGATGCTTCTGAG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTCCAGCACGGCAGTCTaGGAAATCGCCTGGGATGTT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSSTAV*EIAWDV
Trigger: AACATCCCAGGCGATTTCCCAGACTGCCGTGCTGGA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGTTGGCAGATCTCTTTaGGGACACAAGGCACTCCAA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARVGRSL*GHKALQ
Trigger: TTGGAGTGCCTTGTGTCCCCAAAGAGATCTGCCAAC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCATTCCATGGCCACTTTaGTCCCCTCCTGCGCTTGAC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGIPWPL*SPPALD
Trigger: GTCAAGCGCAGGAGGGGACCAAAGTGGCCATGGAAT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCCCACACCAGGGCTCTaGGGAAGTCATTCAGAATGG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGPTPGL*GSHSEW
Trigger: CCATTCTGAATGACTTCCCCAGAGCCCTGGTGTGGG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCAGGTCCTCCTTAGATaGGACACAGATCATGGTGTG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARQVLLR*DTDHGV
Trigger: CACACCATGATCTGTGTCCCATCTAAGGAGGACCTG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGCCTAGGAGGAGCCTaGAGCAGTGTGAGGTTAGTC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSLGGA*SSVRLV
Trigger: GACTAACCTCACACTGCTCCAGGCTCCTCCTAGGCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTGGCGTGCCAGATGTaGGTCTCTAACCATATGTTC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARLACQM*VSNHMF
Trigger: GAACATATGGTTAGAGACTCACATCTGGCACGCCAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGCTTCTTGTCTTTGGTaGAGAGAACGACCATCAGAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARASCLW*RERPSE
Trigger: CTCTGATGGTCGTTCTCTTCACCAAAGACAAGAAGC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTATCCTGGTCCCAGATaGAGCTGTGTGCACATGCCA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGYPGPR*SCVHMP
Trigger: TGGCATGTGCACACAGCTTCATCTGGGACCAGGATA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGATTTCAGCGGCTCGTaGTTGAGCAAAAGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARDFSGS*LSKSRS
Trigger: GCTTCTACTTTTGCTCAAGCACGAGCCGCTGAAATC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCCTGGGATACTTATTTaGCCGGTAAAGCATGAGGCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARPGILI*PVKHEA
Trigger: AGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGAGGTCAGGATACAGTaGGAAAGAGGGCCTATCAGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGEVRIQ*ERGPIS
Trigger: GCTGATAGGCCCTCTTTCGCACTGTATCCTGACCTC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGACCATCAGAGCTCCTaGAAGTGTCAGTCCACCAGT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGDHQSS*KCQSTS
Trigger: ACTGGTGGACTGACACTTGCAGGAGCTCTGATGGTC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCACCAGGACGAGAGCTaGTTCAGCAGTTTCCTACTC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGHQDES*FSSFLL
Trigger: GAGTAGGAAACTGCTGAAGCAGCTCTCGTCCTGGTG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGACTCAGGAAGCAAGTaGGGACTCATCTTGATTTGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARDSGSK*GLILIC
Trigger: GCAAATCAAGATGAGTCCCCACTTGCTTCCTGAGTC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGGCGTTTGACATTGTaGCTCATGGCTCTACGTCGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGRRLTL*LMALRR
Trigger: GCGACGTAGAGCCATGAGCCACAATGTCAAACGCCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCCATATGAAACCGTTTaGCGTGCCAGATGTGAGTCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARPYETV*RARCES
Trigger: AGACTCACATCTGGCACGCCAAACGGTTTCATATGG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGCCAGTTTAAGAGTTaGGTGAAGCCAGATCCACAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSQFKS*VKPDPQ
Trigger: CTGTGGATCTGGCTTCACCCAACTCTTAAACTGGCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGGCTGGTGTCAGGAGTaGGTCAGGCATGCAGATATT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGGWCQE*VRHADI
Trigger: AATATCTGCATGCCTGACCCACTCCTGACACCAGCC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGCTGGATCATCTGTATaGTCAGACAGAGGCTTCCAA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARAGSSV*SDRGFQ
Trigger: TTGGAAGCCTCTGTCTGACCATACAGATGATCCAGC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCTCCTACAGATATCCTaGTCCCAGATGAAGCTGTGT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARLLQIS*SQMKLC
Trigger: ACACAGCTTCATCTGGGACCAGGATATCTGTAGGAG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTCTGGCTTCCTGGGTTaGTTTTCAGCTATGCCTGCC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSGFLG*FSAMPA
Trigger: GGCAGGCATAGCTGAAAACCAACCCAGGAAGCCAGA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTGGCATTCCATTCCATaGCCACTTTGGTCCCCTCCT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGWHSIP*PLWSPP
Trigger: AGGAGGGGACCAAAGTGGCCATGGAATGGAATGCCA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTCATGGCTGCTGACTaGCTGGACAACATTTCCAGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLMAAD*LDNISS
Trigger: GCTGGAAATGTTGTCCAGCCAGTCAGCAGCCATGAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGATTTGCCACTGCCTTaGGGTTCCAGAATGAAGCTC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGDLPLP*GSRMKL
Trigger: GAGCTTCATTCTGGAACCTCAAGGCAGTGGCAAATC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTCCCAGACAAGCAGTaGACTGCAGCAAAAGTCAGG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGFPDKQ*TAAKVR
Trigger: CCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGGAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGTTTAAGAGTTGGGTaGAGCCAGATCCACAGCTGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSLRVG*SQIHSC
Trigger: GCAGCTGTGGATCTGGCTTCACCCAACTCTTAAACT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAAAAATCTCCCTGTGTaGCAAAGCCTAGGAGGAGCC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGKNLPV*QSLGGA
Trigger: GGCTCCTCCTAGGCTTTGTCACACAGGGAGATTTTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGACAAGCAGTGAACTaGAGCAAAAGTCAGGCCTGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGRQAVN*SKSQAC
Trigger: GCAGGCCTGACTTTTGCTGCAGTTCACTGCTTGTCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCACGTCGCATGTGCCTTaGAAGAGTCTGGAAAACCAG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGTSHVP*KSLENQ
Trigger: CTGGTTTTCCAGACTCTTCCAAGGCACATGCGACGT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTCAGAAGCATCCTCTaGGGTCATCCTAGACTTCCA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLRSIL*GHPRLP
Trigger: TGGAAGTCTAGGATGACCCCAGAGGATGCTTCTGAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCACTCGCTCATTAGCTaGATCATCTGTATGGTCAGA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARHSLIS*IICMVR
Trigger: TCTGACCATACAGATGATCCAGCTAATGAGCGAGTG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGCCAGTCACTTTTCCTaGCTGCTGAATCAGAAGTAT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARASHFS*LLNQKY
Trigger: ATACTTCTGATTCAGCAGCCAGGAAAAGTGACTGGC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGTTGGCAGATCTCTTTaGGGACACAAGGCACTCCAA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGVGRSL*GHKALQ
Trigger: TTGGAGTGCCTTGTGTCCCCAAAGAGATCTGCCAAC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCGAACAACACAGAGCTaGCTACCTGTGGTAGCCATA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGRTTQS*LPVVAI
Trigger: TATGGCTACCACAGGTAGCCAGCTCTGTGTTGTTCG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCAGGTCCTCCTTAGATaGGACACAGATCATGGTGTG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGQVLLR*DTDHGV
Trigger: CACACCATGATCTGTGTCCCATCTAAGGAGGACCTG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGCTTGGTATCTTTCTaGATCAGGCAAAGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARSLVSF*IRQSSG
Trigger: TCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTCCCCTTTCCAAAATaGTGCTTTCCATCTCTCTCA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARFPFPK*CFPSLS
Trigger: TGAGAGAGATGGAAAGCATCATTTTGGAAAGGGGAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTTTTAACATGGCACTaGTTTCAGCGGCTCGTGCTT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLLTWH*FQRLVL
Trigger: AAGCACGAGCCGCTGAAATCAGTGCCATGTTAAAAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTGGCGTGCCAGATGTaGGTCTCTAACCATATGTTC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLACQM*VSNHMF
Trigger: GAACATATGGTTAGAGACTCACATCTGGCACGCCAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGTAGTTCTTCCTCTTTaGCTTTCAACTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARVVLPL*LSTPNS
Trigger: GCTGTTTGGAGTTGAAAGGCAAAGAGGAAGAACTAC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCCTGGGATACTTATTTaGCCGGTAAAGCATGAGGCT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGPGILI*PVKHEA
Trigger: AGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGTCACGTTACTGGGCTaGTTTCTCATTTTCTTAGCA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARVTLLG*FLIFLA
Trigger: TGCTAAGAAAATGAGAAACCAGCCCAGTAACGTGAC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGACAGAGTCACGTTACTaGGCTGGTTTCTCATTTTCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARTESRY*AGFSFS
Trigger: AGAAAATGAGAAACCAGCCCAGTAACGTGACTCTGT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAAGCAGTTATATACTTaGGGATCTCCTGAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARKQLYT*GSPEKC
Trigger: GCACTTCTCAGGAGATCCCCAAGTATATAACTGCTT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTGCCTTGGAAGAGTCTaGAAAACCAGTGAGTTAGAT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARCLGRV*KTSELD
Trigger: ATCTAACTCACTGGTTTTCCAGACTCTTCCAAGGCA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCCATATGAAACCGTTTaGCGTGCCAGATGTGAGTCT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGPYETV*RARCES
Trigger: AGACTCACATCTGGCACGCCAAACGGTTTCATATGG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAGCCAGTTTAAGAGTTaGGTGAAGCCAGATCCACAG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSQFKS*VKPDPQ
Trigger: CTGTGGATCTGGCTTCACCCAACTCTTAAACTGGCT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGACCTCGGTAGATAAATaGAATCCAAAAAGCCATGCC +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARTSVDK*NPKSHA
Trigger: GGCATGGCTTTTTGGATTCCATTTATCTACCGAGGT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGATCCGGTTTAAATCCTaGTCCAAGAGTTTATTCTCG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARIRFKS*SKSLFS
Trigger: CGAGAATAAACTCTTGGATCAGGATTTAAACCGGAT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCACTTTTCCTGGCTGCTaGATCAGAAGTATGGGTATC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGTFPGC*IRSMGI
Trigger: GATACCCATACTTCTGATTCAGCAGCCAGGAAAAGT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGAAGATCCTTAGCTTaGTCTTCAGCAAACAGAACT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARRRSLA*SSANRT
Trigger: AGTTCTGTTTGCTGAAGATCAAGCTAAGGATCTTCT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGTTTTGGAGGAAGATTaGTCATTCACATCAGACTCA +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARVLEED*SFTSDS
Trigger: TGAGTCTGATGTGAATGAGCAATCTTCCTCCAAAAC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCAACAACTCAAACACTaGTTCTTGTCTTTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARQQLKH*FLSLVK
Trigger: CTTCACCAAAGACAAGAAGCAGTGTTTGAGTTGTTG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGAGTTAGATGACTTCTaGGTCACAGCTTTTAACATG +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARELDDF*VTAFNM
Trigger: CATGTTAAAAGCTGTGACCCAGAAGTCATCTAACTC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCACTCGCTCATTAGCTTaGTATCTTTCTGGATCAGGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGTRSLA*YLSGSG
Trigger: GCCTGATCCAGAAAGATACCAAGCTAATGAGCGAGT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTCCCCTTTCCAAAATaGTGCTTTCCATCTCTCTCA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGFPFPK*CFPSLS
Trigger: TGAGAGAGATGGAAAGCATCATTTTGGAAAGGGGAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGTAGTTCTTCCTCTTTaGCTTTCAACTCCAAACAGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGVVLPL*LSTPNS
Trigger: GCTGTTTGGAGTTGAAAGGCAAAGAGGAAGAACTAC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGTCACGTTACTGGGCTaGTTTCTCATTTTCTTAGCA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGVTLLG*FLIFLA
Trigger: TGCTAAGAAAATGAGAAACCAGCCCAGTAACGTGAC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCACAGAGTCACGTTACTaGGCTGGTTTCTCATTTTCT +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGTESRY*AGFSFS
Trigger: AGAAAATGAGAAACCAGCCCAGTAACGTGACTCTGT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAAGCAGTTATATACTTaGGGATCTCCTGAGAAGTGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGKQLYT*GSPEKC
Trigger: GCACTTCTCAGGAGATCCCCAAGTATATAACTGCTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGACGGGTTCTGAACAGTaGCATGTTGTTTTTATTTCT +
Preference number: 4 (lower is better)
Translates to: FHAVPQYILNQMVTETARTGSEQ*HVVFIS
Trigger: AGAAATAAAAACAACATGCCACTGTTCAGAACCCGT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAACTTGGTATCTTTCTaGATCAGGCAAAGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGNLVSF*IRQSSG
Trigger: TCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCACCTCGGTAGATAAATaGAATCCAAAAAGCCATGCC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGTSVDK*NPKSHA
Trigger: GGCATGGCTTTTTGGATTCCATTTATCTACCGAGGT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR TCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCATCCGGTTTAAATCCTaGTCCAAGAGTTTATTCTCG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGIRFKS*SKSLFS
Trigger: CGAGAATAAACTCTTGGATCAGGATTTAAACCGGAT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR GCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCAACAACTCAAACACTaGTTCTTGTCTTTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGQQLKH*FLSLVK
Trigger: CTTCACCAAAGACAAGAAGCAGTGTTTGAGTTGTTG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGAGTTAGATGACTTCTaGGTCACAGCTTTTAACATG +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGELDDF*VTAFNM
Trigger: CATGTTAAAAGCTGTGACCCAGAAGTCATCTAACTC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CCA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGTAAATTCCGAAACTTaGTATCTTTCTGGATCAGGC +
Preference number: 4 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGVNSET*YLSGSG
Trigger: GCCTGATCCAGAAAGATACCAAGTTTCGGAATTTAC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS GCA 90 bp GAGCAGTGTGAGGTTAGTCCTGGAAGGGGGCCTGACCACAGCCCCTaGGTCAGAGCTTCCTGCCCAGCTATGGGCGGCCCTGCGGCCTGG +
Preference number: 5 (lower is better)
Translates to: EQCEVSPGRGPDHSP*VRASCPAMGGPAAW
Trigger: CCAGGCCGCAGGGCCGCCCATAGCTGGGCAGGAAGCTCTGACGCAGGGGCTGTGGTCAGGCCCCCTTCCAGGACTAACCTCACACTGCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp GTGCAGGTCCTCCTTAGATGGGACACAGATCATGGTGTGAGGCTCTaGGCTGCCCTTCCTGAGCAGGGACAAGCTGACCCACACCAGGGC +
Preference number: 5 (lower is better)
Translates to: VQVLLRWDTDHGVRL*AALPEQGQADPHQG
Trigger: GCCCTGGTGTGGGTCAGCTTGTCCCTGCTCAGGAAGGGCAGCCCAGAGCCTCACACCATGATCTGTGTCCCATCTAAGGAGGACCTGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp GATACTGCAGTGAGGTTGGAGGCCGCAGCAGCACCAGGCCCCTCATaGCTGCTGACTGGCTGGACAACATTTCCAGCAAGCCGGTCATAC +
Preference number: 5 (lower is better)
Translates to: DTAVRLEAAAAPGPS*LLTGWTTFPASRSY
Trigger: GTATGACCGGCTTGCTGGAAATGTTGTCCAGCCAGTCAGCAGCCATGAGGGGCCTGGTGCTGCTGCGGCCTCCAACCTCACTGCAGTATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp GGAGCCCTCCTGATCTCAGAACTGGGCCCACACCAGGACGAGAGCTaGTTCAGCAGTTTCCTACTCCGAACAACACAGAGCTGGCTACCT +
Preference number: 5 (lower is better)
Translates to: GALLISELGPHQDES*FSSFLLRTTQSWLP
Trigger: AGGTAGCCAGCTCTGTGTTGTTCGGAGTAGGAAACTGCTGAAGCAGCTCTCGTCCTGGTGTGGGCCCAGTTCTGAGATCAGGAGGGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp AGAACGACCATCAGAGCTCCTGCAAGTGTCAGTCCACCAGTGATGTaGTGTCTCCTCGGCATCCTCTTCCCCTGTGTGTACAGGAGCAGC +
Preference number: 5 (lower is better)
Translates to: RTTIRAPASVSPPVM*CLLGILFPCVYRSS
Trigger: GCTGCTCCTGTACACACAGGGGAAGAGGATGCCGAGGAGACACCACATCACTGGTGGACTGACACTTGCAGGAGCTCTGATGGTCGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp CCAGCCACTGCCCCAGCCCAGTCGGTCTTCGCCAGTCACTTTTCCTaGCTGCTGAATCAGAAGTATGGGTATCTTAGATTCACGAGCCCC +
Preference number: 5 (lower is better)
Translates to: PATAPAQSVFASHFS*LLNQKYGYLRFTSP
Trigger: GGGGCTCGTGAATCTAAGATACCCATACTTCTGATTCAGCAGCCAGGAAAAGTGACTGGCGAAGACCGACTGGGCTGGGGCAGTGGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp CCGGCCCAAGCATTTCCCTGGGATACTTATTTGCCCGGTAAAGCATaGGGCTCCCTTGCCGCTTCCCAGACAAGCAGTGAACTGCAGCAA +
Preference number: 5 (lower is better)
Translates to: PAQAFPWDTYLPGKA*GSLAASQTSSELQQ
Trigger: TTGCTGCAGTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGGGAAATGCTTGGGCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCAGGCTCGGTGGCTCTaGGCCGTGGGCCTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARQARWL*AVGLSP
Trigger: TGGGGAGAGGCCCACGGCCAAGAGCCACCGAGCCTG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp CCAGATGAAGGTAACCGGCCCAAGCATTTCCCTGGGATACTTATTTaGCCGGTAAAGCATGAGGCTCCCTTGCCGCTTCCCAGACAAGCA +
Preference number: 5 (lower is better)
Translates to: PDEGNRPKHFPGILI*PVKHEAPLPLPRQA
Trigger: TGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGGGAAATGCTTGGGCCGGTTACCTTCATCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp CAGCTGCCGGTGCACATCCCTTCCTCACAGGTAAATTCCGAAACTTaGTATCTTTCTGGATCAGGCAAAGCTCTGGATCGCTGTGGGGGC +
Preference number: 5 (lower is better)
Translates to: QLPVHIPSSQVNSET*YLSGSGKALDRCGG
Trigger: GCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGGAATTTACCTGTGAGGAAGGGATGTGCACCGGCAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS TCA 90 bp CATTGTCAAGTCACTGACTATAATCCCTGTAGTGGGAGATCGCCATaGCCGAGGCTGGCAGGCATCTCGTGTCCCGTCACCAATGGTCTT +
Preference number: 5 (lower is better)
Translates to: HCQVTDYNPCSGRSP*PRLAGISCPVTNGL
Trigger: AAGACCATTGGTGACGGGACACGAGATGCCTGCCAGCCTCGGTCATGGCGATCTCCCACTACAGGGATTATAGTCAGTGACTTGACAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp CGCTCATTAGCTGGATCATCTGTATGGTCAGACAGAGGCTTCCAATaGGCACAAGACCAGCTGCCGGTGCACATCCCTTCCTCACAGGTA +
Preference number: 5 (lower is better)
Translates to: RSLAGSSVWSDRGFQ*AQDQLPVHIPSSQV
Trigger: TACCTGTGAGGAAGGGATGTGCACCGGCAGCTGGTCTTGTGCTCATTGGAAGCCTCTGTCTGACCATACAGATGATCCAGCTAATGAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS TCA 90 bp TCACTGGCATTCCATTCCATGGCCACTTTGGTCCCCTCCTGCGCTTaGCAGCCTGTAACTTCTGGCTTCCTGGGTTGGTTTTCAGCTATG +
Preference number: 5 (lower is better)
Translates to: SLAFHSMATLVPSCA*QPVTSGFLGWFSAM
Trigger: CATAGCTGAAAACCAACCCAGGAAGCCAGAAGTTACAGGCTGTCAAGCGCAGGAGGGGACCAAAGTGGCCATGGAATGGAATGCCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp GGCTTCCTGGGTTGGTTTTCAGCTATGCCTGCCTCATTAGATAGTTaGCAGATCTCTTTGGGGACACAAGGCACTCCAAGCCGTCTTGGG +
Preference number: 5 (lower is better)
Translates to: GFLGWFSAMPASLDS*QISLGTQGTPSRLG
Trigger: CCCAAGACGGCTTGGAGTGCCTTGTGTCCCCAAAGAGATCTGCCAACTATCTAATGAGGCAGGCATAGCTGAAAACCAACCCAGGAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCAGGCTCGGTGGCTCTaGGCCGTGGGCCTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGQARWL*AVGLSP
Trigger: TGGGGAGAGGCCCACGGCCAAGAGCCACCGAGCCTG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp CGGCAGTCTGGGAAATCGCCTGGGATGTTAGGAGACCGTCTGTATTaGGAATGCACTGTAGCCTCTTTTAGTCCACCAACTCGTGCACCT +
Preference number: 5 (lower is better)
Translates to: RQSGKSPGMLGDRLY*ECTVASFSPPTRAP
Trigger: AGGTGCACGAGTTGGTGGACTAAAAGAGGCTACAGTGCATTCTCAATACAGACGGTCTCCTAACATCCCAGGCGATTTCCCAGACTGCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp AAGTCATTCAGAATGGACAAGCAGACGTTACTAGTCAGTTCTTGCTaGGCTCTGCAGGGAGCCCTCCTGATCTCAGAACTGGGCCCACAC +
Preference number: 5 (lower is better)
Translates to: KSFRMDKQTLLVSSC*ALQGALLISELGPH
Trigger: GTGTGGGCCCAGTTCTGAGATCAGGAGGGCTCCCTGCAGAGCTCAGCAAGAACTGACTAGTAACGTCTGCTTGTCCATTCTGAATGACTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp GTAAAGCATGAGGCTCCCTTGCCGCTTCCCAGACAAGCAGTGAACTaGAGCAAAAGTCAGGCCTGCGTCTATGCTACACATTTGAGAGAG +
Preference number: 5 (lower is better)
Translates to: VKHEAPLPLPRQAVN*SKSQACVYATHLRE
Trigger: CTCTCTCAAATGTGTAGCATAGACGCAGGCCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp ACACTGCTTCTTGTCTTTGGTGAAGAGAACGACCATCAGAGCTCCTaGAAGTGTCAGTCCACCAGTGATGTGGTGTCTCCTCGGCATCCT +
Preference number: 5 (lower is better)
Translates to: TLLLVFGEENDHQSS*KCQSTSDVVSPRHP
Trigger: AGGATGCCGAGGAGACACCACATCACTGGTGGACTGACACTTGCAGGAGCTCTGATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp TTTTTGGCCATCTCCTGCAACCGTCTAGGAAGGCGTTTGACATTGTaGCTCATGGCTCTACGTCGCATGTGCCTTGGAAGAGTCTGGAAA +
Preference number: 5 (lower is better)
Translates to: FLAISCNRLGRRLTL*LMALRRMCLGRVWK
Trigger: TTTCCAGACTCTTCCAAGGCACATGCGACGTAGAGCCATGAGCCACAATGTCAAACGCCTTCCTAGACGGTTGCAGGAGATGGCCAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp ATCTTCAGCAAACAGAACTCCAGCACGGCAGTCTGGGAAATCGCCTaGGATGTTAGGAGACCGTCTGTATTGAGAATGCACTGTAGCCTC +
Preference number: 5 (lower is better)
Translates to: IFSKQNSSTAVWEIA*DVRRPSVLRMHCSL
Trigger: GAGGCTACAGTGCATTCTCAATACAGACGGTCTCCTAACATCCCAGGCGATTTCCCAGACTGCCGTGCTGGAGTTCTGTTTGCTGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGCACTCCAAGCCGTCTaGGGTCAGTCTCCTGAGCAC +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARALQAV*GQSPEH
Trigger: GTGCTCAGGAGACTGACCCAAGACGGCTTGGAGTGC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGATACTGCAGTGAGGTaGGAGGCCGCAGCAGCACCA +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARDTAVR*EAAAAP
Trigger: TGGTGCTGCTGCGGCCTCCAACCTCACTGCAGTATC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp CTAGGAAGGCGTTTGACATTGTGGCTCATGGCTCTACGTCGCATGTaGCTTGGAAGAGTCTGGAAAACCAGTGAGTTAGATGACTTCTGG +
Preference number: 5 (lower is better)
Translates to: LGRRLTLWLMALRRM*LGRVWKTSELDDFW
Trigger: CCAGAAGTCATCTAACTCACTGGTTTTCCAGACTCTTCCAAGGCACATGCGACGTAGAGCCATGAGCCACAATGTCAAACGCCTTCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp CTCCAGAAGCAGCTGCTTCACTCGCTCATTAGCTTGGTATCTTTCTaGATCAGGCAAAGCTCTGGATCGCTGTGGGGGCAAATTTACTCT +
Preference number: 5 (lower is better)
Translates to: LQKQLLHSLISLVSF*IRQSSGSLWGQIYS
Trigger: AGAGTAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGCTAATGAGCGAGTGAAGCAGCTGCTTCTGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGCAGGAGGCAGAGGTTaGTCATGGCTCGATAGCAGG +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARAGGRG*SWLDSR
Trigger: CCTGCTATCGAGCCATGACAAACCTCTGCCTCCTGC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAAGCATGAGGCTCCCTaGCCGCTTCCCAGACAAGCA +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARKHEAP*PLPRQA
Trigger: TGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGCCATGCCCCAGCCCTaGGGAATGAGGACATCCCAG +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGAMPQP*GMRTSQ
Trigger: CTGGGATGTCCTCATTCCCAAGGGCTGGGGCATGGC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp GATGATATCCCTCCCAACAACTCAAACACTGCTTCTTGTCTTTGGTaGAGAGAACGACCATCAGAGCTCCTGCAAGTGTCAGTCCACCAG +
Preference number: 5 (lower is better)
Translates to: DDIPPNNSNTASCLW*RERPSELLQVSVHQ
Trigger: CTGGTGGACTGACACTTGCAGGAGCTCTGATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTGTTTGAGTTGTTGGGAGGGATATCATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp TGCGATCCGGGCACCAGCAACTCACTTCTCATCCGGTTTAAATCCTaGTCCAAGAGTTTATTCTCGGTGACACTCCTACAGATATCCTGG +
Preference number: 5 (lower is better)
Translates to: CDPGTSNSLLIRFKS*SKSLFSVTLLQISW
Trigger: CCAGGATATCTGTAGGAGTGTCACCGAGAATAAACTCTTGGATCAGGATTTAAACCGGATGAGAAGTGAGTTGCTGGTGCCCGGATCGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp ATCCTTAGCTTGATCTTCAGCAAACAGAACTCCAGCACGGCAGTCTaGGAAATCGCCTGGGATGTTAGGAGACCGTCTGTATTGAGAATG +
Preference number: 5 (lower is better)
Translates to: ILSLIFSKQNSSTAV*EIAWDVRRPSVLRM
Trigger: CATTCTCAATACAGACGGTCTCCTAACATCCCAGGCGATTTCCCAGACTGCCGTGCTGGAGTTCTGTTTGCTGAAGATCAAGCTAAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGATACTGCAGTGAGGTaGGAGGCCGCAGCAGCACCA +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGDTAVR*EAAAAP
Trigger: TGGTGCTGCTGCGGCCTCCAACCTCACTGCAGTATC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp ACATTGTGGCTCATGGCTCTACGTCGCATGTGCCTTGGAAGAGTCTaGAAAACCAGTGAGTTAGATGACTTCTGGGTCACAGCTTTTAAC +
Preference number: 5 (lower is better)
Translates to: TLWLMALRRMCLGRV*KTSELDDFWVTAFN
Trigger: GTTAAAAGCTGTGACCCAGAAGTCATCTAACTCACTGGTTTTCCAGACTCTTCCAAGGCACATGCGACGTAGAGCCATGAGCCACAATGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp TCTCCCCAAGGCAGTAACCCCACTTCTTCACCATATGAAACCGTTTaGCGTGCCAGATGTGAGTCTCTAACCATATGTTCTTCTGTTGTC +
Preference number: 5 (lower is better)
Translates to: SPQGSNPTSSPYETV*RARCESLTICSSVV
Trigger: GACAACAGAAGAACATATGGTTAGAGACTCACATCTGGCACGCCAAACGGTTTCATATGGTGAAGAAGTGGGGTTACTGCCTTGGGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp CGAAACTTGGTATCTTTCTGGATCAGGCAAAGCTCTGGATCGCTGTaGGGGCAAATTTACTCTCGGATCCCTAACTGTCAATCCCAGAAT +
Preference number: 5 (lower is better)
Translates to: RNLVSFWIRQSSGSL*GQIYSRIPNCQSQN
Trigger: ATTCTGGGATTGACAGTTAGGGATCCGAGAGTAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS CCA 90 bp GCACATCCCTTCCTCACAGGTAAATTCCGAAACTTGGTATCTTTCTaGATCAGGCAAAGCTCTGGATCGCTGTGGGGGCAAATTTACTCT +
Preference number: 5 (lower is better)
Translates to: AHPFLTGKFRNLVSF*IRQSSGSLWGQIYS
Trigger: AGAGTAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGGAATTTACCTGTGAGGAAGGGATGTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCTCTTGTTTCTGAGATaGGGACGGCTTCCCCTTTCC +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARLLFLR*GRLPLS
Trigger: GGAAAGGGGAAGCCGTCCCAATCTCAGAAACAAGAG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCGTCTAGGAAGGCGTTaGACATTGTGGCTCATGGCT +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARRLGRR*TLWLMA
Trigger: AGCCATGAGCCACAATGTCAAACGCCTTCCTAGACG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTCTCCGCCTCTTTTTaGGCCATCTCCTGCAACCGT +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARFSASF*AISCNR
Trigger: ACGGTTGCAGGAGATGGCCAAAAAAGAGGCGGAGAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGCAGGAGGCAGAGGTTaGTCATGGCTCGATAGCAGG +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGAGGRG*SWLDSR
Trigger: CCTGCTATCGAGCCATGACAAACCTCTGCCTCCTGC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAAGCATGAGGCTCCCTaGCCGCTTCCCAGACAAGCA +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGKHEAP*PLPRQA
Trigger: TGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGAGTTGGCAGATCTCTTaGGGGACACAAGGCACTCCA +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARSWQIS*GTQGTP
Trigger: TGGAGTGCCTTGTGTCCCCAAAGAGATCTGCCAACT...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTCTGGCTTCCTGGGTaGGTTTTCAGCTATGCCTGC +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARFWLPG*VFSYAC
Trigger: GCAGGCATAGCTGAAAACCAACCCAGGAAGCCAGAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGGTTACTAGTCAGTTCTaGCTGAGCTCTGCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARVTSQF*LSSAGS
Trigger: GCTCCCTGCAGAGCTCAGCAAGAACTGACTAGTAAC...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp ATCAGAAGTATGGGTATCTTAGATTCACGAGCCCCTAAATCAAGTTaGGATCCGGGCACCAGCAACTCACTTCTCATCCGGTTTAAATCC +
Preference number: 5 (lower is better)
Translates to: IRSMGILDSRAPKSS*DPGTSNSLLIRFKS
Trigger: GGATTTAAACCGGATGAGAAGTGAGTTGCTGGTGCCCGGATCGCAACTTGATTTAGGGGCTCGTGAATCTAAGATACCCATACTTCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 90 bp ATTAGCTTGGTATCTTTCTGGATCAGGCAAAGCTCTGGATCGCTGTaGGGGCAAATTTACTCTCGGATCCCTAACTGTCAATCCCAGAAT +
Preference number: 5 (lower is better)
Translates to: ISLVSFWIRQSSGSL*GQIYSRIPNCQSQN
Trigger: ATTCTGGGATTGACAGTTAGGGATCCGAGAGTAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGCTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTCAGCGGCTCGTGCTaGAGCAAAAGTAGAAGCAGT +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARFSGSC*SKSRSS
Trigger: ACTGCTTCTACTTTTGCTCAAGCACGAGCCGCTGAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTACGTCGCATGTGCCTaGGAAGAGTCTGGAAAACCA +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARYVACA*EESGKP
Trigger: TGGTTTTCCAGACTCTTCCAAGGCACATGCGACGTA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 90 bp ATTGCTCATTCACATCAGACTCAGGAAGCAAGTGGGGACTCATCTTaGTTTGCCACTGCCTTGAGGTTCCAGAATGAAGCTCTTGTTTCT +
Preference number: 5 (lower is better)
Translates to: IAHSHQTQEASGDSS*FATALRFQNEALVS
Trigger: AGAAACAAGAGCTTCATTCTGGAACCTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACTTGCTTCCTGAGTCTGATGTGAATGAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTCTTGTTTCTGAGATaGGGACGGCTTCCCCTTTCC +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLLFLR*GRLPLS
Trigger: GGAAAGGGGAAGCCGTCCCAATCTCAGAAACAAGAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTCCAGAATGAAGCTCTaGTTTCTGAGATTGGGACGG +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARSRMKL*FLRLGR
Trigger: CCGTCCCAATCTCAGAAACAAGAGCTTCATTCTGGA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCGTCTAGGAAGGCGTTaGACATTGTGGCTCATGGCT +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGRLGRR*TLWLMA
Trigger: AGCCATGAGCCACAATGTCAAACGCCTTCCTAGACG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTCTCCGCCTCTTTTTaGGCCATCTCCTGCAACCGT +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGFSASF*AISCNR
Trigger: ACGGTTGCAGGAGATGGCCAAAAAAGAGGCGGAGAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCACTGCTTCTTGTCTTaGGTGAAGAGAACGACCATC +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARHCFLS*VKRTTI
Trigger: GATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTCTGGCTTCCTGGGTaGGTTTTCAGCTATGCCTGC +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGFWLPG*VFSYAC
Trigger: GCAGGCATAGCTGAAAACCAACCCAGGAAGCCAGAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGTTACTAGTCAGTTCTaGCTGAGCTCTGCAGGGAGC +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGVTSQF*LSSAGS
Trigger: GCTCCCTGCAGAGCTCAGCAAGAACTGACTAGTAAC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCAAGTGGGGACTCATCTaGATTTGCCACTGCCTTGAG +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGKWGLI*ICHCLE
Trigger: CTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACTT...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTCAGCGGCTCGTGCTaGAGCAAAAGTAGAAGCAGT +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGFSGSC*SKSRSS
Trigger: ACTGCTTCTACTTTTGCTCAAGCACGAGCCGCTGAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTACGTCGCATGTGCCTaGGAAGAGTCTGGAAAACCA +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGYVACA*EESGKP
Trigger: TGGTTTTCCAGACTCTTCCAAGGCACATGCGACGTA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCTCAAACACTGCTTCTaGTCTTTGGTGAAGAGAACG +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARLKHCF*SLVKRT
Trigger: CGTTCTCTTCACCAAAGACAAGAAGCAGTGTTTGAG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTCCAGAATGAAGCTCTaGTTTCTGAGATTGGGACGG +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGSRMKL*FLRLGR
Trigger: CCGTCCCAATCTCAGAAACAAGAGCTTCATTCTGGA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGCCATATGTTCTTCTGTaGTCTGCGGTTAAATTCCAG +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARPYVLL*SAVKFQ
Trigger: CTGGAATTTAACCGCAGACAACAGAAGAACATATGG...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCACTGCTTCTTGTCTTaGGTGAAGAGAACGACCATC +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGHCFLS*VKRTTI
Trigger: GATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCACTCGCTCATTAGCTaGGTATCTTTCTGGATCAGG +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGHSLIS*VSFWIR
Trigger: CCTGATCCAGAAAGATACCAAGCTAATGAGCGAGTG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCGGTTTTGGAGGAAGATaGCTCATTCACATCAGACTC +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGGFGGR*LIHIRL
Trigger: GAGTCTGATGTGAATGAGCAATCTTCCTCCAAAACC...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 90 bp CTATGCTACACATTTGAGAGAGCGCTTTCAGTAGTTCTTCCTCTTTaGCTTTCAACTCCAAACAGCAGTAATATGATAAATCCTGCAGGA +
Preference number: 5 (lower is better)
Translates to: LCYTFERALSVVLPL*LSTPNSSNMINPAG
Trigger: TCCTGCAGGATTTATCATATTACTGCTGTTTGGAGTTGAAAGGCAAAGAGGAAGAACTACTGAAAGCGCTCTCTCAAATGTGTAGCATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp TTCCACGCAGTTCCACAATATATCTTAAATCAGATGGTGACAGAGACAGCCAGGTTCTTAAACATGGTTTaGGAGGAAGATTGCTCATTC +
Preference number: 5 (lower is better)
Translates to: FHAVPQYILNQMVTETARFLNMV*EEDCSF
Trigger: GAATGAGCAATCTTCCTCCAAAACCATGTTTAAGAA...CCTGGCTGTCTCTGTCACCATCTGATTTAAGATATATTGTGGAACTGCGTGGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCCATATGTTCTTCTGTaGTCTGCGGTTAAATTCCAG +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGPYVLL*SAVKFQ
Trigger: CTGGAATTTAACCGCAGACAACAGAAGAACATATGG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCTTCTTAAACATGGTTTaGGAGGAAGATTGCTCATTC +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGFLNMV*EEDCSF
Trigger: GAATGAGCAATCTTCCTCCAAAACCATGTTTAAGAA...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS-3UTR CAA 90 bp CAGCCAGGACTTTCTGTGAGCTTTGACCAAAATAGTTATAATTTAAGACCAGGCCTGAACAGTGGCATGTaGTTTTTATTTCTTCTAGGA +
Preference number: 5 (lower is better)
Translates to: QPGLSVSFDQNSYNLRPGLNSGM*FLFLLG
Trigger: TCCTAGAAGAAATAAAAACAACATGCCACTGTTCAG...GCCTGGTCTTAAATTATAACTATTTTGGTCAAAGCTCACAGAAAGTCCTGGCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp GAGGTTAGTCCTGGAAGGGGGCCTGACCACAGCCCCTaGGTCAGAGCTTCCTGCCCAGCTATGGGCGGCCCT +
Preference number: 6 (lower is better)
Translates to: EVSPGRGPDHSP*VRASCPAMGGP
Trigger: AGGGCCGCCCATAGCTGGGCAGGAAGCTCTGACGCAGGGGCTGTGGTCAGGCCCCCTTCCAGGACTAACCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp GTGAGGTTGGAGGCCGCAGCAGCACCAGGCCCCTCATaGCTGCTGACTGGCTGGACAACATTTCCAGCAAGC +
Preference number: 6 (lower is better)
Translates to: VRLEAAAAPGPS*LLTGWTTFPAS
Trigger: GCTTGCTGGAAATGTTGTCCAGCCAGTCAGCAGCCATGAGGGGCCTGGTGCTGCTGCGGCCTCCAACCTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp CGACCATCAGAGCTCCTGCAAGTGTCAGTCCACCAGTaGTGTGGTGTCTCCTCGGCATCCTCTTCCCCTGTG +
Preference number: 6 (lower is better)
Translates to: RPSELLQVSVHQ*CGVSSASSSPV
Trigger: CACAGGGGAAGAGGATGCCGAGGAGACACCACATCACTGGTGGACTGACACTTGCAGGAGCTCTGATGGTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp CTCTTCCCCTGTGTGTACAGGAGCAGCCCTCAGTGCTaGGGTCAGGATACAGTGCGAAAGAGGGCCTATCAG +
Preference number: 6 (lower is better)
Translates to: LFPCVYRSSPQC*GQDTVRKRAYQ
Trigger: CTGATAGGCCCTCTTTCGCACTGTATCCTGACCTCAGCACTGAGGGCTGCTCCTGTACACACAGGGGAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp GGTAACCGGCCCAAGCATTTCCCTGGGATACTTATTTaGCCGGTAAAGCATGAGGCTCCCTTGCCGCTTCCC +
Preference number: 6 (lower is better)
Translates to: GNRPKHFPGILI*PVKHEAPLPLP
Trigger: GGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGGGAAATGCTTGGGCCGGTTACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp AGCATGAGGCTCCCTTGCCGCTTCCCAGACAAGCAGTaGACTGCAGCAAAAGTCAGGCCTGCGTCTATGCTA +
Preference number: 6 (lower is better)
Translates to: SMRLPCRFPDKQ*TAAKVRPASML
Trigger: TAGCATAGACGCAGGCCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp GCTGGATCATCTGTATGGTCAGACAGAGGCTTCCAATaGGCACAAGACCAGCTGCCGGTGCACATCCCTTCC +
Preference number: 6 (lower is better)
Translates to: AGSSVWSDRGFQ*AQDQLPVHIPS
Trigger: GGAAGGGATGTGCACCGGCAGCTGGTCTTGTGCTCATTGGAAGCCTCTGTCTGACCATACAGATGATCCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS TCA 72 bp CACCTCAATGGTAATTCTTGCAAACCGATACTGCAGTaGGGTTGGAGGCCGCAGCAGCACCAGGCCCCTCAT +
Preference number: 6 (lower is better)
Translates to: HLNGNSCKPILQ*GWRPQQHQAPH
Trigger: ATGAGGGGCCTGGTGCTGCTGCGGCCTCCAACCTCACTGCAGTATCGGTTTGCAAGAATTACCATTGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp GAGGCTCCCTTGCCGCTTCCCAGACAAGCAGTGAACTaGAGCAAAAGTCAGGCCTGCGTCTATGCTACACAT +
Preference number: 6 (lower is better)
Translates to: EAPLPLPRQAVN*SKSQACVYATH
Trigger: ATGTGTAGCATAGACGCAGGCCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp CTGATCTCAGAACTGGGCCCACACCAGGACGAGAGCTaGTTCAGCAGTTTCCTACTCCGAACAACACAGAGC +
Preference number: 6 (lower is better)
Translates to: LISELGPHQDES*FSSFLLRTTQS
Trigger: GCTCTGTGTTGTTCGGAGTAGGAAACTGCTGAAGCAGCTCTCGTCCTGGTGTGGGCCCAGTTCTGAGATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp ATCAGAGCTCCTGCAAGTGTCAGTCCACCAGTGATGTaGTGTCTCCTCGGCATCCTCTTCCCCTGTGTGTAC +
Preference number: 6 (lower is better)
Translates to: IRAPASVSPPVM*CLLGILFPCVY
Trigger: GTACACACAGGGGAAGAGGATGCCGAGGAGACACCACATCACTGGTGGACTGACACTTGCAGGAGCTCTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 90 bp CCAGCTGCCGGTGCACATCCCTTCCTCACAGGTAAATTCCGAAACTaGGTATCTTTCTGGATCAGGCAAAGCTCTGGATCGCTGTGGGGG +
Preference number: 6 (lower is better)
Translates to: PAAGAHPFLTGKFRN*VSFWIRQSSGSLWG
Trigger: CCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGGAATTTACCTGTGAGGAAGGGATGTGCACCGGCAGCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS CCA 72 bp AATATGATAAATCCTGCAGGAGGCAGAGGTTTGTCATaGCTCGATAGCAGGCTCGGTGGCTCTTGGCCGTGG +
Preference number: 6 (lower is better)
Translates to: NMINPAGGRGLS*LDSRLGGSWPW
Trigger: CCACGGCCAAGAGCCACCGAGCCTGCTATCGAGCCATGACAAACCTCTGCCTCCTGCAGGATTTATCATATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp AGATCTCTTTGGGGACACAAGGCACTCCAAGCCGTCTaGGGTCAGTCTCCTGAGCACCAGGCATTGAAGCTA +
Preference number: 6 (lower is better)
Translates to: RSLWGHKALQAV*GQSPEHQALKL
Trigger: TAGCTTCAATGCCTGGTGCTCAGGAGACTGACCCAAGACGGCTTGGAGTGCCTTGTGTCCCCAAAGAGATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp ATTCCATTCCATGGCCACTTTGGTCCCCTCCTGCGCTaGACAGCCTGTAACTTCTGGCTTCCTGGGTTGGTT +
Preference number: 6 (lower is better)
Translates to: IPFHGHFGPLLR*TACNFWLPGLV
Trigger: AACCAACCCAGGAAGCCAGAAGTTACAGGCTGTCAAGCGCAGGAGGGGACCAAAGTGGCCATGGAATGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 90 bp CATTTCCCTGGGATACTTATTTGCCCGGTAAAGCATGAGGCTCCCTaGCCGCTTCCCAGACAAGCAGTGAACTGCAGCAAAAGTCAGGCC +
Preference number: 6 (lower is better)
Translates to: HFPGILICPVKHEAP*PLPRQAVNCSKSQA
Trigger: GGCCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGGGAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp GCATTTCCCTGGGATACTTATTTGCCCGGTAAAGCATaGGGCTCCCTTGCCGCTTCCCAGACAAGCAGTGAA +
Preference number: 6 (lower is better)
Translates to: AFPWDTYLPGKA*GSLAASQTSSE
Trigger: TTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCCAGGGAAATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp ATCTCCTGCAACCGTCTAGGAAGGCGTTTGACATTGTaGCTCATGGCTCTACGTCGCATGTGCCTTGGAAGA +
Preference number: 6 (lower is better)
Translates to: ISCNRLGRRLTL*LMALRRMCLGR
Trigger: TCTTCCAAGGCACATGCGACGTAGAGCCATGAGCCACAATGTCAAACGCCTTCCTAGACGGTTGCAGGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp GCCCCAGCCCAGTCGGTCTTCGCCAGTCACTTTTCCTaGCTGCTGAATCAGAAGTATGGGTATCTTAGATTC +
Preference number: 6 (lower is better)
Translates to: APAQSVFASHFS*LLNQKYGYLRF
Trigger: GAATCTAAGATACCCATACTTCTGATTCAGCAGCCAGGAAAAGTGACTGGCGAAGACCGACTGGGCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp CAGCTGCTTCACTCGCTCATTAGCTTGGTATCTTTCTaGATCAGGCAAAGCTCTGGATCGCTGTGGGGGCAA +
Preference number: 6 (lower is better)
Translates to: QLLHSLISLVSF*IRQSSGSLWGQ
Trigger: TTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGCTAATGAGCGAGTGAAGCAGCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS CCA 72 bp CCCTCCAGAAGCAGCTGCTTCACTCGCTCATTAGCTTaGTATCTTTCTGGATCAGGCAAAGCTCTGGATCGC +
Preference number: 6 (lower is better)
Translates to: PSRSSCFTRSLA*YLSGSGKALDR
Trigger: GCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGCTAATGAGCGAGTGAAGCAGCTGCTTCTGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS CAA 72 bp TTTTTGGCCATCTCCTGCAACCGTCTAGGAAGGCGTTaGACATTGTGGCTCATGGCTCTACGTCGCATGTGC +
Preference number: 6 (lower is better)
Translates to: FLAISCNRLGRR*TLWLMALRRMC
Trigger: GCACATGCGACGTAGAGCCATGAGCCACAATGTCAAACGCCTTCCTAGACGGTTGCAGGAGATGGCCAAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp GGGATACTTATTTGCCCGGTAAAGCATGAGGCTCCCTaGCCGCTTCCCAGACAAGCAGTGAACTGCAGCAAA +
Preference number: 6 (lower is better)
Translates to: GILICPVKHEAP*PLPRQAVNCSK
Trigger: TTTGCTGCAGTTCACTGCTTGTCTGGGAAGCGGCAAGGGAGCCTCATGCTTTACCGGGCAAATAAGTATCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp GCTATGCCTGCCTCATTAGATAGTTGGCAGATCTCTTaGGGGACACAAGGCACTCCAAGCCGTCTTGGGTCA +
Preference number: 6 (lower is better)
Translates to: AMPASLDSWQIS*GTQGTPSRLGS
Trigger: TGACCCAAGACGGCTTGGAGTGCCTTGTGTCCCCAAAGAGATCTGCCAACTATCTAATGAGGCAGGCATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp CCCAGTCGGTCTTCGCCAGTCACTTTTCCTGGCTGCTaGATCAGAAGTATGGGTATCTTAGATTCACGAGCC +
Preference number: 6 (lower is better)
Translates to: PSRSSPVTFPGC*IRSMGILDSRA
Trigger: GGCTCGTGAATCTAAGATACCCATACTTCTGATTCAGCAGCCAGGAAAAGTGACTGGCGAAGACCGACTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp AGAATGGACAAGCAGACGTTACTAGTCAGTTCTTGCTaGGCTCTGCAGGGAGCCCTCCTGATCTCAGAACTG +
Preference number: 6 (lower is better)
Translates to: RMDKQTLLVSSC*ALQGALLISEL
Trigger: CAGTTCTGAGATCAGGAGGGCTCCCTGCAGAGCTCAGCAAGAACTGACTAGTAACGTCTGCTTGTCCATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp CCCAGACAAGCAGTGAACTGCAGCAAAAGTCAGGCCTaGGTCTATGCTACACATTTGAGAGAGCGCTTTCAG +
Preference number: 6 (lower is better)
Translates to: PRQAVNCSKSQA*VYATHLRERFQ
Trigger: CTGAAAGCGCTCTCTCAAATGTGTAGCATAGACGCAGGCCTGACTTTTGCTGCAGTTCACTGCTTGTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp CTTGTCTTTGGTGAAGAGAACGACCATCAGAGCTCCTaGAAGTGTCAGTCCACCAGTGATGTGGTGTCTCCT +
Preference number: 6 (lower is better)
Translates to: LVFGEENDHQSS*KCQSTSDVVSP
Trigger: AGGAGACACCACATCACTGGTGGACTGACACTTGCAGGAGCTCTGATGGTCGTTCTCTTCACCAAAGACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp ATGGGTATCTTAGATTCACGAGCCCCTAAATCAAGTTaGGATCCGGGCACCAGCAACTCACTTCTCATCCGG +
Preference number: 6 (lower is better)
Translates to: MGILDSRAPKSS*DPGTSNSLLIR
Trigger: CCGGATGAGAAGTGAGTTGCTGGTGCCCGGATCGCAACTTGATTTAGGGGCTCGTGAATCTAAGATACCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp CCGAAACTTGGTATCTTTCTGGATCAGGCAAAGCTCTaGATCGCTGTGGGGGCAAATTTACTCTCGGATCCC +
Preference number: 6 (lower is better)
Translates to: PKLGIFLDQAKL*IAVGANLLSDP
Trigger: GGGATCCGAGAGTAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS CCA 72 bp AAACAGAACTCCAGCACGGCAGTCTGGGAAATCGCCTaGGATGTTAGGAGACCGTCTGTATTGAGAATGCAC +
Preference number: 6 (lower is better)
Translates to: KQNSSTAVWEIA*DVRRPSVLRMH
Trigger: GTGCATTCTCAATACAGACGGTCTCCTAACATCCCAGGCGATTTCCCAGACTGCCGTGCTGGAGTTCTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp AGCAGTAATATGATAAATCCTGCAGGAGGCAGAGGTTaGTCATGGCTCGATAGCAGGCTCGGTGGCTCTTGG +
Preference number: 6 (lower is better)
Translates to: SSNMINPAGGRG*SWLDSRLGGSW
Trigger: CCAAGAGCCACCGAGCCTGCTATCGAGCCATGACAAACCTCTGCCTCCTGCAGGATTTATCATATTACTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp ACCCTCCAGAAGCAGCTGCTTCACTCGCTCATTAGCTaGGTATCTTTCTGGATCAGGCAAAGCTCTGGATCG +
Preference number: 6 (lower is better)
Translates to: TLQKQLLHSLIS*VSFWIRQSSGS
Trigger: CGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGCTAATGAGCGAGTGAAGCAGCTGCTTCTGGAGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079028.6
CDS TCA 72 bp GGGCGTCGTCTGTACTTCTCTAGAAGATCCTTAGCTTaGTCTTCAGCAAACAGAACTCCAGCACGGCAGTCT +
Preference number: 6 (lower is better)
Translates to: GRRLYFSRRSLA*SSANRTPARQS
Trigger: AGACTGCCGTGCTGGAGTTCTGTTTGCTGAAGATCAAGCTAAGGATCTTCTAGAGAAGTACAGACGACGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp CTCATGGCTCTACGTCGCATGTGCCTTGGAAGAGTCTaGAAAACCAGTGAGTTAGATGACTTCTGGGTCACA +
Preference number: 6 (lower is better)
Translates to: LMALRRMCLGRV*KTSELDDFWVT
Trigger: TGTGACCCAGAAGTCATCTAACTCACTGGTTTTCCAGACTCTTCCAAGGCACATGCGACGTAGAGCCATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp AAGAGTTTATTCTCGGTGACACTCCTACAGATATCCTaGTCCCAGATGAAGCTGTGTGCACATGCCACAGGC +
Preference number: 6 (lower is better)
Translates to: KSLFSVTLLQIS*SQMKLCAHATG
Trigger: GCCTGTGGCATGTGCACACAGCTTCATCTGGGACCAGGATATCTGTAGGAGTGTCACCGAGAATAAACTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp ATTCAGAATGGACAAGCAGACGTTACTAGTCAGTTCTaGCTGAGCTCTGCAGGGAGCCCTCCTGATCTCAGA +
Preference number: 6 (lower is better)
Translates to: IQNGQADVTSQF*LSSAGSPPDLR
Trigger: TCTGAGATCAGGAGGGCTCCCTGCAGAGCTCAGCAAGAACTGACTAGTAACGTCTGCTTGTCCATTCTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp TCACATCAGACTCAGGAAGCAAGTGGGGACTCATCTTaGTTTGCCACTGCCTTGAGGTTCCAGAATGAAGCT +
Preference number: 6 (lower is better)
Translates to: SHQTQEASGDSS*FATALRFQNEA
Trigger: AGCTTCATTCTGGAACCTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACTTGCTTCCTGAGTCTGATGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp GCAGCAAAAGTCAGGCCTGCGTCTATGCTACACATTTaGGAGAGCGCTTTCAGTAGTTCTTCCTCTTTGCCT +
Preference number: 6 (lower is better)
Translates to: AAKVRPASMLHI*ESAFSSSSSLP
Trigger: AGGCAAAGAGGAAGAACTACTGAAAGCGCTCTCTCAAATGTGTAGCATAGACGCAGGCCTGACTTTTGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp CCTCCCAACAACTCAAACACTGCTTCTTGTCTTTGGTaGAGAGAACGACCATCAGAGCTCCTGCAAGTGTCA +
Preference number: 6 (lower is better)
Translates to: PPNNSNTASCLW*RERPSELLQVS
Trigger: TGACACTTGCAGGAGCTCTGATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTGTTTGAGTTGTTGGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp GGGAAATCGCCTGGGATGTTAGGAGACCGTCTGTATTaGGAATGCACTGTAGCCTCTTTTAGTCCACCAACT +
Preference number: 6 (lower is better)
Translates to: GKSPGMLGDRLY*ECTVASFSPPT
Trigger: AGTTGGTGGACTAAAAGAGGCTACAGTGCATTCTCAATACAGACGGTCTCCTAACATCCCAGGCGATTTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp CGTTTGACATTGTGGCTCATGGCTCTACGTCGCATGTaGCTTGGAAGAGTCTGGAAAACCAGTGAGTTAGAT +
Preference number: 6 (lower is better)
Translates to: RLTLWLMALRRM*LGRVWKTSELD
Trigger: ATCTAACTCACTGGTTTTCCAGACTCTTCCAAGGCACATGCGACGTAGAGCCATGAGCCACAATGTCAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp GTATCTTTCTGGATCAGGCAAAGCTCTGGATCGCTGTaGGGGCAAATTTACTCTCGGATCCCTAACTGTCAA +
Preference number: 6 (lower is better)
Translates to: VSFWIRQSSGSL*GQIYSRIPNCQ
Trigger: TTGACAGTTAGGGATCCGAGAGTAAATTTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp TTCCTCACAGGTAAATTCCGAAACTTGGTATCTTTCTaGATCAGGCAAAGCTCTGGATCGCTGTGGGGGCAA +
Preference number: 6 (lower is better)
Translates to: FLTGKFRNLVSF*IRQSSGSLWGQ
Trigger: TTGCCCCCACAGCGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGGAATTTACCTGTGAGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS CAA 72 bp GGTGCACATCCCTTCCTCACAGGTAAATTCCGAAACTaGGTATCTTTCTGGATCAGGCAAAGCTCTGGATCG +
Preference number: 6 (lower is better)
Translates to: GAHPFLTGKFRN*VSFWIRQSSGS
Trigger: CGATCCAGAGCTTTGCCTGATCCAGAAAGATACCAAGTTTCGGAATTTACCTGTGAGGAAGGGATGTGCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000052290.14
CDS TCA 72 bp GGCACCAGCAACTCACTTCTCATCCGGTTTAAATCCTaGTCCAAGAGTTTATTCTCGGTGACACTCCTACAG +
Preference number: 6 (lower is better)
Translates to: GTSNSLLIRFKS*SKSLFSVTLLQ
Trigger: CTGTAGGAGTGTCACCGAGAATAAACTCTTGGATCAGGATTTAAACCGGATGAGAAGTGAGTTGCTGGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CCA 72 bp GAAGATTGCTCATTCACATCAGACTCAGGAAGCAAGTaGGGACTCATCTTGATTTGCCACTGCCTTGAGGTT +
Preference number: 6 (lower is better)
Translates to: EDCSFTSDSGSK*GLILICHCLEV
Trigger: AACCTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACTTGCTTCCTGAGTCTGATGTGAATGAGCAATCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp TATCCCTCCCAACAACTCAAACACTGCTTCTTGTCTTaGGTGAAGAGAACGACCATCAGAGCTCCTGCAAGT +
Preference number: 6 (lower is better)
Translates to: YPSQQLKHCFLS*VKRTTIRAPAS
Trigger: ACTTGCAGGAGCTCTGATGGTCGTTCTCTTCACCAAAGACAAGAAGCAGTGTTTGAGTTGTTGGGAGGGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp AAGCAAGTGGGGACTCATCTTGATTTGCCACTGCCTTaGGGTTCCAGAATGAAGCTCTTGTTTCTGAGATTG +
Preference number: 6 (lower is better)
Translates to: KQVGTHLDLPLP*GSRMKLLFLRL
Trigger: CAATCTCAGAAACAAGAGCTTCATTCTGGAACCTCAAGGCAGTGGCAAATCAAGATGAGTCCCCACTTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp TTTATTTCTTCTAGGACAGCCAGTTTAAGAGTTGGGTaGAGCCAGATCCACAGCTGCCTATCCTCAGAAGCA +
Preference number: 6 (lower is better)
Translates to: FISSRTASLRVG*SQIHSCLSSEA
Trigger: TGCTTCTGAGGATAGGCAGCTGTGGATCTGGCTTCACCCAACTCTTAAACTGGCTGTCCTAGAAGAAATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp GGTGTCAGGAGTGGGTCAGGCATGCAGATATTTGACTaGACGGGTTCTGAACAGTGGCATGTTGTTTTTATT +
Preference number: 6 (lower is better)
Translates to: GVRSGSGMQIFD*TGSEQWHVVFI
Trigger: AATAAAAACAACATGCCACTGTTCAGAACCCGTCAAGTCAAATATCTGCATGCCTGACCCACTCCTGACACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS TCA 72 bp GTGTCAGGAGTGGGTCAGGCATGCAGATATTTGACTTaGCGGGTTCTGAACAGTGGCATGTTGTTTTTATTT +
Preference number: 6 (lower is better)
Translates to: VSGVGQACRYLT*RVLNSGMLFLF
Trigger: AAATAAAAACAACATGCCACTGTTCAGAACCCGTCAAGTCAAATATCTGCATGCCTGACCCACTCCTGACAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS CAA 72 bp CCTGCTTTCCAGCCTCCCTTTTTCTTAAACATGGTTTaGGAGGAAGATTGCTCATTCACATCAGACTCAGGA +
Preference number: 6 (lower is better)
Translates to: PAFQPPFFLNMV*EEDCSFTSDSG
Trigger: TCCTGAGTCTGATGTGAATGAGCAATCTTCCTCCAAAACCATGTTTAAGAAAAAGGGAGGCTGGAAAGCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6
CDS GCA 72 bp ACATTTGAGAGAGCGCTTTCAGTAGTTCTTCCTCTTTaGCTTTCAACTCCAAACAGCAGTAATATGATAAAT +
Preference number: 6 (lower is better)
Translates to: TFERALSVVLPL*LSTPNSSNMIN
Trigger: ATTTATCATATTACTGCTGTTTGGAGTTGAAAGGCAAAGAGGAAGAACTACTGAAAGCGCTCTCTCAAATGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052290.14
ENSMUST00000079028.6