Pregenerated sensors for PON1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002588Ensembl transcript IDs: ENSMUST00000002663.12, ENSMUST00000176945.2, ENSMUST00000177159.9
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATaGCAAAGGATTGAAATAATGGCCTCACTTTCGATGACGTGCGTG | + |
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Preference number: 1 (lower is better) Translates to: HSLVSRDHCGRHLTV*QRIEIMASLSMTCV Trigger: CACGCACGTCATCGAAAGTGAGGCCATTATTTCAATCCTTTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| 3UTR CCA 72 bp | GTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATaGCAAAGGATTGAAATAATGGCCTCACTTTCGATG | + |
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Preference number: 3 (lower is better) Translates to: VSRDHCGRHLTV*QRIEIMASLSM Trigger: CATCGAAAGTGAGGCCATTATTTCAATCCTTTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CCA 90 bp | GATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCAGCACTCATTCCGTTGGGATaGCATCCCACCCAGAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: DLLPGNSHTFLCLRLRSALIPLG*HPTQRS Trigger: GGACCTCTGGGTGGGATGCCATCCCAACGGAATGAG...TGCTGACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CCA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAAAGATCCTCATTCCGTTaGGATGGCATCCCACCCAGA | + |
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Preference number: 4 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQRSSFR*DGIPPR Trigger: TCTGGGTGGGATGCCATCCCAACGGAATGAGGATCT...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | GGTCAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGATGGTTCTTGTAAAGTaGCAACACCAGTCCCACGAG | + |
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Preference number: 4 (lower is better) Translates to: GQHSLVSRDHCGRHLTVWMVLVK*QHQSHE Trigger: CTCGTGGGACTGGTGTTGGCACTTTACAAGAACCAT...CCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTGACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAAGCCGGGAGGATTCTCTaGGTCATAGAAAAAGATCCT | + |
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Preference number: 4 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQAGRIL*VIEKDP Trigger: AGGATCTTTTTCTATGACGCAGAGAATCCTCCCGGC...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | GGTCAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCTTTGTGGAACACAGTaGCAATCAGCAGTTTCCCTT | + |
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Preference number: 4 (lower is better) Translates to: GQHSLVSRDHCGRHLTVWLCGTQ*QSAVSL Trigger: AAGGGAAACTGCTGATTGGCACTGTGTTCCACAAAG...CCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | GATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCAGCATGCCATCAAGGGAAATaGCAATGCCATTCGCGAAAT | + |
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Preference number: 4 (lower is better) Translates to: DLLPGNSHTFLCLRLRSACHQGK*QCHSRN Trigger: ATTTCGCGAATGGCATTGGCATTTCCCTTGATGGCA...TGCTGACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAAGTGATGGTTTTCAGATaGAAGAGTGATCTTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQVMVFR*KSDLSS Trigger: AGAGGAAAGATCACTCTTGCATCTGAAAACCATCAC...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | TTAGGATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCCAAGGGAAATGCCAATaGCATTCGCGAAATCAAACC | + |
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Preference number: 4 (lower is better) Translates to: LGSIARKLSYLLMSETKVQGKCQ*HSRNQT Trigger: GGTTTGATTTCGCGAATGGCATTGGCATTTCCCTTG...GACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATCCTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | GGTCAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCTATATAGACATACTTaGCATCAAGGGAAATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GQHSLVSRDHCGRHLTVWLYRHT*HQGKCQ Trigger: TTGGCATTTCCCTTGATGGCAAGTATGTCTATATAG...CCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTGACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR TCA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAATTTCAGATGCAAGAGTaGTCTTTCCTCTTCTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQFQMQE*SFLFLK Trigger: TTTCAAGAAGAGGAAAGATCACTCTTGCATCTGAAA...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR TCA 90 bp | TTAGGATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCGCAGAAGTTCATGTGTaGTGGTTTTCAGATGCAAGA | + |
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Preference number: 4 (lower is better) Translates to: LGSIARKLSYLLMSETKVAEVHV*WFSDAR Trigger: TCTTGCATCTGAAAACCATCACACATGAACTTCTGC...GACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATCCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CCA 90 bp | GGTCAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGTTTTTCCAGGCTTACTaGGATCGAAACTTTTTATTC | + |
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Preference number: 4 (lower is better) Translates to: GQHSLVSRDHCGRHLTVWFFQAY*DRNFLF Trigger: GAATAAAAAGTTTCGATCCCAGTAAGCCTGGAAAAA...CCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTGACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CCA 90 bp | GATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCAGCAAATAGTGATCATTTGTaGCATAAAAGCTCTCAGGTC | + |
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Preference number: 4 (lower is better) Translates to: DLLPGNSHTFLCLRLRSANSDHL*HKSSQV Trigger: GACCTGAGAGCTTTTATGCCACAAATGATCACTATT...TGCTGACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CCA 90 bp | TTAGGATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCCACCTGGACTTTATCTaGACTGTAGTAAACAACATT | + |
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Preference number: 4 (lower is better) Translates to: LGSIARKLSYLLMSETKVHLDFI*TVVNNI Trigger: AATGTTGTTTACTACAGTCCAGATAAAGTCCAGGTG...GACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATCCTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR GCA 90 bp | TTAGGATCTATTGCCAGGAAACTCTCATACCTTCTTATGTCTGAGACTAAGGTCGACGGTACCATTCTCTaGATAAACTACAGTTATTTT | + |
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Preference number: 4 (lower is better) Translates to: LGSIARKLSYLLMSETKVDGTIL*INYSYF Trigger: AAAATAACTGTAGTTTATGCAGAGAATGGTACCGTC...GACCTTAGTCTCAGACATAAGAAGGTATGAGAGTTTCCTGGCAATAGATCCTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| 3UTR CAA 72 bp | TCTTTAAGTAGTCTAAGAGTAATACTCAAGAAACCCTaGCTAGTTAGGATCTATTGCCAGGAAACTCTCATA | + |
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Preference number: 4 (lower is better) Translates to: SLSSLRVILKKP*LVRIYCQETLI Trigger: TATGAGAGTTTCCTGGCAATAGATCCTAACTAGCAAGGGTTTCTTGAGTATTACTCTTAGACTACTTAAAGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CCA 90 bp | ACACAGTGCCAATCAGCAGTTTCCCTTTGTACACAGAGGCGACCGTaGTGCCTTGCAGGACGGTACCATTCTCTGCATAAACTACAGTTA | + |
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Preference number: 5 (lower is better) Translates to: TQCQSAVSLCTQRRP*CLAGRYHSLHKLQL Trigger: TAACTGTAGTTTATGCAGAGAATGGTACCGTCCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGATTGGCACTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS GCA 90 bp | CAGTGCCAATCAGCAGTTTCCCTTTGTACACAGAGGCGACCGTGGTaGCTTGCAGGACGGTACCATTCTCTGCATAAACTACAGTTATTT | + |
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Preference number: 5 (lower is better) Translates to: QCQSAVSLCTQRRPW*LAGRYHSLHKLQLF Trigger: AAATAACTGTAGTTTATGCAGAGAATGGTACCGTCCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGATTGGCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CAA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAAAAGATCCTCATTCCGTaGGGATGGCATCCCACCCAG | + |
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Preference number: 5 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQKILIP*GWHPTQ Trigger: CTGGGTGGGATGCCATCCCAACGGAATGAGGATCTT...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CAA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAAATCAGCAGTTTCCCTTaGTACACAGAGGCGACCGTG | + |
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Preference number: 5 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQISSFP*YTEATV Trigger: CACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGAT...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CCA 90 bp | CTTCTGCTACCACCTGGACTTTATCTGGACTGTAGTAAACAACATTaGACCACGACAGACCCAAGTACATTTCCCAGGACCGTAAGTATG | + |
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Preference number: 5 (lower is better) Translates to: LLLPPGLYLDCSKQH*TTTDPSTFPRTVSM Trigger: CATACTTACGGTCCTGGGAAATGTACTTGGGTCTGTCGTGGTCCAATGTTGTTTACTACAGTCCAGATAAAGTCCAGGTGGTAGCAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CCA 90 bp | GCCATTCGCGAAATCAAACCCTTCTGCTACCACCTGGACTTTATCTaGACTGTAGTAAACAACATTGGACCACGACAGACCCAAGTACAT | + |
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Preference number: 5 (lower is better) Translates to: AIREIKPFCYHLDFI*TVVNNIGPRQTQVH Trigger: ATGTACTTGGGTCTGTCGTGGTCCAATGTTGTTTACTACAGTCCAGATAAAGTCCAGGTGGTAGCAGAAGGGTTTGATTTCGCGAATGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS GCA 90 bp | GCCATCAAGGGAAATGCCAATGCCATTCGCGAAATCAAACCCTTCTaGTACCACCTGGACTTTATCTGGACTGTAGTAAACAACATTGGA | + |
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Preference number: 5 (lower is better) Translates to: AIKGNANAIREIKPF*YHLDFIWTVVNNIG Trigger: TCCAATGTTGTTTACTACAGTCCAGATAAAGTCCAGGTGGTAGCAGAAGGGTTTGATTTCGCGAATGGCATTGGCATTTCCCTTGATGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CAA 90 bp | CAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGCAAACAAGGGTGTCAAAGTaGAGGACCTTCAATGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: QHSLVSRDHCGRHLTVWQTRVSK*RTFNGV Trigger: AACACCATTGAAGGTCCTCAACTTTGACACCCTTGT...TTGCCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS GCA 90 bp | ACACATGAATCTTGTGAGCCAGCAATTCAGCTATATAGACATACTTaGCATCAAGGGAAATGCCAATGCCATTCGCGAAATCAAACCCTT | + |
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Preference number: 5 (lower is better) Translates to: THESCEPAIQLYRHT*HQGKCQCHSRNQTL Trigger: AAGGGTTTGATTTCGCGAATGGCATTGGCATTTCCCTTGATGGCAAGTATGTCTATATAGCTGAATTGCTGGCTCACAAGATTCATGTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS-3UTR CAA 90 bp | GGTCAGCATTCATTAGTTAGCAGAGATCACTGTGGTAGGCACCTTACAGTATGGGGAAAGCATTTAATCTaGTTTGATAGGAAGACCGAT | + |
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Preference number: 5 (lower is better) Translates to: GQHSLVSRDHCGRHLTVWGKHLI*FDRKTD Trigger: ATCGGTCTTCCTATCAAACAAGATTAAATGCTTTCC...CCATACTGTAAGGTGCCTACCACAGTGATCTCTGCTAACTAATGAATGCTGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS GCA 72 bp | TCAGCAGTTTCCCTTTGTACACAGAGGCGACCGTGGTaGCTTGCAGGACGGTACCATTCTCTGCATAAACTA | + |
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Preference number: 6 (lower is better) Translates to: SAVSLCTQRRPW*LAGRYHSLHKL Trigger: TAGTTTATGCAGAGAATGGTACCGTCCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CCA 72 bp | CAATCAGCAGTTTCCCTTTGTACACAGAGGCGACCGTaGTGCCTTGCAGGACGGTACCATTCTCTGCATAAA | + |
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Preference number: 6 (lower is better) Translates to: QSAVSLCTQRRP*CLAGRYHSLHK Trigger: TTTATGCAGAGAATGGTACCGTCCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGATTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CAA 72 bp | CAGTTTCCCTTTGTACACAGAGGCGACCGTGGTGCCTaGCAGGACGGTACCATTCTCTGCATAAACTACAGT | + |
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Preference number: 6 (lower is better) Translates to: QFPFVHRGDRGA*QDGTILCINYS Trigger: ACTGTAGTTTATGCAGAGAATGGTACCGTCCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CAA 90 bp | GCCAATCAGCAGTTTCCCTTTGTACACAGAGGCGACCGTGGTGCCTaGCAGGACGGTACCATTCTCTGCATAAACTACAGTTATTTTGGG | + |
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Preference number: 6 (lower is better) Translates to: ANQQFPFVHRGDRGA*QDGTILCINYSYFG Trigger: CCCAAAATAACTGTAGTTTATGCAGAGAATGGTACCGTCCTGCAAGGCACCACGGTCGCCTCTGTGTACAAAGGGAAACTGCTGATTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CCA 72 bp | CCACCTGGACTTTATCTGGACTGTAGTAAACAACATTaGACCACGACAGACCCAAGTACATTTCCCAGGACC | + |
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Preference number: 6 (lower is better) Translates to: PPGLYLDCSKQH*TTTDPSTFPRT Trigger: GGTCCTGGGAAATGTACTTGGGTCTGTCGTGGTCCAATGTTGTTTACTACAGTCCAGATAAAGTCCAGGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS GCA 72 bp | GGAAATGCCAATGCCATTCGCGAAATCAAACCCTTCTaGTACCACCTGGACTTTATCTGGACTGTAGTAAAC | + |
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Preference number: 6 (lower is better) Translates to: GNANAIREIKPF*YHLDFIWTVVN Trigger: GTTTACTACAGTCCAGATAAAGTCCAGGTGGTAGCAGAAGGGTTTGATTTCGCGAATGGCATTGGCATTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS GCA 72 bp | TCTTGTGAGCCAGCAATTCAGCTATATAGACATACTTaGCATCAAGGGAAATGCCAATGCCATTCGCGAAAT | + |
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Preference number: 6 (lower is better) Translates to: SCEPAIQLYRHT*HQGKCQCHSRN Trigger: ATTTCGCGAATGGCATTGGCATTTCCCTTGATGGCAAGTATGTCTATATAGCTGAATTGCTGGCTCACAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CCA 72 bp | AATTTAAATACCTCCACAGTGGACGAGGAGTCTGGATaGTTTACCACCAGTAGGTACACAGTGTTATCTTCA | + |
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Preference number: 6 (lower is better) Translates to: NLNTSTVDEESG*FTTSRYTVLSS Trigger: TGAAGATAACACTGTGTACCTACTGGTGGTAAACCATCCAGACTCCTCGTCCACTGTGGAGGTATTTAAATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000002663.12 ENSMUST00000176945.2 ENSMUST00000177159.9 |
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| CDS GCA 72 bp | ATTCAGCTATATAGACATACTTGCCATCAAGGGAAATaGCAATGCCATTCGCGAAATCAAACCCTTCTGCTA | + |
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Preference number: 6 (lower is better) Translates to: IQLYRHTCHQGK*QCHSRNQTLLL Trigger: TAGCAGAAGGGTTTGATTTCGCGAATGGCATTGGCATTTCCCTTGATGGCAAGTATGTCTATATAGCTGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002663.12 |
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| CDS CAA 90 bp | AATGTATTTCCTATAATTTCTAACTCTGACACTGCTGGCTCCTTCTaGTTCAAGTCCATCAGAAGTATTTTTCCAGGCTTACTGGGATCG | + |
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Preference number: 6 (lower is better) Translates to: NVFPIISNSDTAGSF*FKSIRSIFPGLLGS Trigger: CGATCCCAGTAAGCCTGGAAAAATACTTCTGATGGACTTGAACAAGAAGGAGCCAGCAGTGTCAGAGTTAGAAATTATAGGAAATACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000002663.12 ENSMUST00000176945.2 ENSMUST00000177159.9 |
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| CDS CAA 72 bp | CCTATAATTTCTAACTCTGACACTGCTGGCTCCTTCTaGTTCAAGTCCATCAGAAGTATTTTTCCAGGCTTA | + |
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Preference number: 6 (lower is better) Translates to: PIISNSDTAGSF*FKSIRSIFPGL Trigger: TAAGCCTGGAAAAATACTTCTGATGGACTTGAACAAGAAGGAGCCAGCAGTGTCAGAGTTAGAAATTATAGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000002663.12 ENSMUST00000176945.2 ENSMUST00000177159.9 |
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