RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POMGNT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028700

Ensembl transcript IDs: ENSMUST00000106494.3, ENSMUST00000106496.8, ENSMUST00000106498.8, ENSMUST00000120083.8, ENSMUST00000121052.8

Found 343 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTaGGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTT +
Preference number: 1 (lower is better)
Translates to: RRLRGDLVQCLKVSV*VCQHMDPIWACPSV
Trigger: AACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
3UTR CAA 90 bp CCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTaGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATAAATAGGTTC +
Preference number: 2 (lower is better)
Translates to: PSGQHPGPERNKGPG*GLFPRPPGQSINRF
Trigger: GAACCTATTTATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
3UTR-3UTR GCA 90 bp GCCAGGCCTGGGAGGACAGGGTATGAAAAGAGTGGATCAGCTACCCAGGGATCCTCCTGGGAACTCTCCTaGTCTTCTTTGACAAGGAAG +
Preference number: 2 (lower is better)
Translates to: ARPGRTGYEKSGSATQGSSWELS*SSLTRK
Trigger: CTTCCTTGTCAAAGAAGAGCAGGAGAGTTCCCAGGA...GGATCCCTGGGTAGCTGATCCACTCTTTTCATACCCTGTCCTCCCAGGCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR-3UTR TCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTTCAATAAATAGGTTCTaGGCCAGGCCCAGCCCTGCA +
Preference number: 2 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFSINRF*ARPSPA
Trigger: TGCAGGGCTGGGCCTGGCTCAGAACCTATTTATTGA...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000120083.8
3UTR-3UTR GCA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAATCCTGGGAACTCTCCTaGTCTTCTTTGACAAGGAAG +
Preference number: 2 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQSWELS*SSLTRK
Trigger: CTTCCTTGTCAAAGAAGAGCAGGAGAGTTCCCAGGA...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR-3UTR TCA 90 bp ATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTTCAATAAATAGGTTCTaGGCCAGGCCTGGGAGGACA +
Preference number: 2 (lower is better)
Translates to: IWTKRRLRGDLVQCLKVSSINRF*ARPGRT
Trigger: TGTCCTCCCAGGCCTGGCTCAGAACCTATTTATTGA...AGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR-3UTR GCA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTTCCTGGGAACTCTCCTaGTCTTCTTTGACAAGGAAG +
Preference number: 2 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSSWELS*SSLTRK
Trigger: CTTCCTTGTCAAAGAAGAGCAGGAGAGTTCCCAGGA...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR-3UTR TCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCTCAATAAATAGGTTCTaGGCCAGGCCTGGGAGGACA +
Preference number: 2 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVSINRF*ARPGRT
Trigger: TGTCCTCCCAGGCCTGGCTCAGAACCTATTTATTGA...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR TCA 72 bp AGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTaGGTCTGTCAGCACATGGACCCCATATGGGCCTGT +
Preference number: 3 (lower is better)
Translates to: RGDLVQCLKVSV*VCQHMDPIWAC
Trigger: ACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
3UTR TCA 72 bp TTCCCAAGGCCCCCAGGACAGTCAATAAATAGGTTCTaGGCCAGGCCTGGGAGGACAGGGTATGAAAAGAGT +
Preference number: 3 (lower is better)
Translates to: FPRPPGQSINRF*ARPGRTGYEKS
Trigger: ACTCTTTTCATACCCTGTCCTCCCAGGCCTGGCTCAGAACCTATTTATTGACTGTCCTGGGGGCCTTGGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR-3UTR CAA 90 bp TGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGGGGCCTGTCCATCAGTaGGGCACAACAGTTTTCCTG +
Preference number: 3 (lower is better)
Translates to: WTKRRLRGDLVQCLKVSVGPVHQ*GTTVFL
Trigger: CAGGAAAACTGTTGTGCCCAACTGATGGACAGGCCC...CACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
3UTR-3UTR CAA 90 bp ATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTAGGGGATCCTTCCCCTaGGAGTTAGTAATTAAATTC +
Preference number: 3 (lower is better)
Translates to: IWTKRRLRGDLVQCLKVSRGSFP*ELVIKF
Trigger: GAATTTAATTACTAACTCCAAGGGGAAGGATCCCCT...AGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLAPVGD*CLCAEG
Trigger: CCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGC...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGAPVGD*CLCAEG
Trigger: CCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGC...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCG +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQCCRSA*GGGSTP
Trigger: CGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCA...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGACGGGGGCCACCATGTTaGGGAACAGCACCATGGCCT +
Preference number: 4 (lower is better)
Translates to: QRASLSGGTQYPALQSPGRGPPC*GTAPWP
Trigger: AGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCG...TCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: PLPASTKSYRVGQRASLSAPVGD*CLCAEG
Trigger: CCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGC...AGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp ATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCG +
Preference number: 4 (lower is better)
Translates to: ILVQRGIKAPGWAYSQGPCCRSA*GGGSTP
Trigger: CGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCA...GGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTTCGGGTCCTTGCAGCTaGACACGCTCCCGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSSGPCS*TRSRSP
Trigger: AGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGA...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGTCGGGTCCTTGCAGCTaGACACGCTCCCGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQSGPCS*TRSRSP
Trigger: AGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGA...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTACAGGCCCCGGTGGTTaGCACGAACATCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSTGPGG*HEHPGP
Trigger: GGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGCTCCACAGGCCCCGGTaGTTGCCACGAACATCCAGG +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLLHRPR*LPRTSR
Trigger: CCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAG...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCG +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGCCRSA*GGGSTP
Trigger: CGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCA...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCACGTAGCCCTCCACTTTaGTGCAGAAGCGCCTGCGGC +
Preference number: 4 (lower is better)
Translates to: GQHPGPERNKGPGLGLFPRSPPL*CRSACG
Trigger: GCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACG...TGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCAC +
Preference number: 4 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGIGPVP*NDSHRH
Trigger: GTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAAT...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGATGTGGAGATACCCCTTaGGCTGAGAGCAGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: RASLSGGTQYPALQSPGGCGDTP*AESRER
Trigger: GCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACA...TCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCCTGGTGTGGGCCACTTaGGCTCAAGCTCCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGLVWAT*AQAPPC
Trigger: ACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAG...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGCTTCATTGGCCTCGCTaGTTGCTCTCCGAGTGTCCA +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEELHWPR*LLSECP
Trigger: TGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAG...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCAT +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSRYPLG*EQRAQH
Trigger: ATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTAGGCACTTGGCAAGCTaGGTCCAGGTGGCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSRHLAS*VQVAKS
Trigger: TGACTTCGCCACCTGGACTCAGCTTGCCAAGTGCCT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFAPVGD*CLCAEG
Trigger: CCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGC...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAGTCAAACACGCGCTTTaGCATCACGTGGCCCGTGGC +
Preference number: 4 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSVKHAL*HHVARG
Trigger: GCCACGGGCCACGTGATGGCAAAGCGCGTGTTTGAC...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCG +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASCCRSA*GGGSTP
Trigger: CGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCA...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCAC +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLIGPVP*NDSHRH
Trigger: GTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAAT...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCTTGAGGACTATGACATaGATGCCTCGGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGLRTMT*MPRPCS
Trigger: GGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAA...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTTGTGGAGATACCCCTTaGGCTGAGAGCAGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSCGDTP*AESRER
Trigger: GCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACA...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGCTGGTGTGGGCCACTTaGGCTCAAGCTCCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQLVWAT*AQAPPC
Trigger: ACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAG...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCCAAGGGTCCTTGCTGTaGTCCAAAACCTCGGCCTCA +
Preference number: 4 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGQGSLL*SKTSAS
Trigger: TGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTG...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCAT +
Preference number: 4 (lower is better)
Translates to: HPGPERNKGPGLGLFPRPRYPLG*EQRAQH
Trigger: ATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCT...GGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTGGGAAACATCCGGGATaGTACACTCTCGGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: PALPLPASTKSYRVGQRAGKHPG*YTLGPG
Trigger: GCCGGGGCCGAGAGTGTATCATCCCGGATGTTTCCC...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGAGTAGCCGTTCATGTTaGGGCCGACGATGCCAAAGT +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEESSRSC*GRRCQS
Trigger: ACTTTGGCATCGTCGGCCTCAACATGAACGGCTACT...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCACTTGGCAAGCTaGGTCCAGGTGGCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: GQHPGPERNKGPGLGLFPRHLAS*VQVAKS
Trigger: TGACTTCGCCACCTGGACTCAGCTTGCCAAGTGCCT...TGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGIGLAD*SPSVQD
Trigger: ATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAAT...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp ATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCGTCAAACACGCGCTTTaGCATCACGTGGCCCGTGGC +
Preference number: 4 (lower is better)
Translates to: MSQSHPQGSILVQRGIKAVKHAL*HHVARG
Trigger: GCCACGGGCCACGTGATGGCAAAGCGCGTGTTTGAC...GGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGGTTCAACTCCGTATCTaGCCAGTGACACTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: PVPPSGQHPGPERNKGPGVQLRI*PVTLSL
Trigger: GAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAAC...CCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATATCGGGTCCTTGCAGCTaGACACGCTCCCGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: RNKGPGLGLFPRPPGQSISGPCS*TRSRSP
Trigger: AGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGA...TATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCAC +
Preference number: 4 (lower is better)
Translates to: HPGPERNKGPGLGLFPRPIGPVP*NDSHRH
Trigger: GTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAAT...GGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGATTGAGGACTATGACATaGATGCCTCGGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: QRASLSGGTQYPALQSPGLRTMT*MPRPCS
Trigger: GGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAA...TCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCACTGGTGTGGGCCACTTaGGCTCAAGCTCCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSLVWAT*AQAPPC
Trigger: ACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAG...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGACAGCTTTTCTGGTGTaGGCCACTTGGGCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEETAFLV*ATWAQA
Trigger: AGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGT...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCAAGGGTCCTTGCTGTaGTCCAAAACCTCGGCCTCA +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSQGSLL*SKTSAS
Trigger: TGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTG...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp ATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCTTCATTGGCCTCGCTaGTTGCTCTCCGAGTGTCCA +
Preference number: 4 (lower is better)
Translates to: ILVQRGIKAPGWAYSQGPLHWPR*LLSECP
Trigger: TGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAG...GGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGCGGGGGCCACCATGTTaGGGAACAGCACCATGGCCT +
Preference number: 4 (lower is better)
Translates to: LPASTKSYRVGQRASLSGRGPPC*GTAPWP
Trigger: AGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCG...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGCGGGGGCCACCATGTTaGGGAACAGCACCATGGCCT +
Preference number: 4 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQRGPPC*GTAPWP
Trigger: AGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCG...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAGGGAAACATCCGGGATaGTACACTCTCGGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTGKHPG*YTLGPG
Trigger: GCCGGGGCCGAGAGTGTATCATCCCGGATGTTTCCC...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGAAACCTCGGCCTCACTaGGCAGTCTGTGAATTTCCA +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEEKPRPH*AVCEFP
Trigger: TGGAAATTCACAGACTGCTCAGTGAGGCCGAGGTTT...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTGTCAAACACGCGCTTTaGCATCACGTGGCCCGTGGC +
Preference number: 4 (lower is better)
Translates to: PASTKSYRVGQRASLSGGVKHAL*HHVARG
Trigger: GCCACGGGCCACGTGATGGCAAAGCGCGTGTTTGAC...ACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGTCGGGTCCTTGCAGCTaGACACGCTCCCGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: LCVSLSAHGPHMGLSISWSGPCS*TRSRSP
Trigger: AGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGA...CCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAACAGGCCCCGGTGGTTaGCACGAACATCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTTGPGG*HEHPGP
Trigger: GGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGACAGGCCCCGGTGGTTaGCACGAACATCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKTGPGG*HEHPGP
Trigger: GGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGT...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp ATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCTTGAGGACTATGACATaGATGCCTCGGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: ILVQRGIKAPGWAYSQGPLRTMT*MPRPCS
Trigger: GGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAA...GGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATGTGGAGATACCCCTTaGGCTGAGAGCAGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQCGDTP*AESRER
Trigger: GCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACA...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTACAGCTTTTCTGGTGTaGGCCACTTGGGCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSTAFLV*ATWAQA
Trigger: AGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGACAGCTTTTCTGGTGTaGGCCACTTGGGCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQTAFLV*ATWAQA
Trigger: AGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGT...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTCTCCACAGGCCCCGGTaGTTGCCACGAACATCCAGG +
Preference number: 4 (lower is better)
Translates to: GLCVSLSAHGPHMGLSISLHRPR*LPRTSR
Trigger: CCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAG...ACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGCTCCACAGGCCCCGGTaGTTGCCACGAACATCCAGG +
Preference number: 4 (lower is better)
Translates to: LPASTKSYRVGQRASLSGLHRPR*LPRTSR
Trigger: CCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAG...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCAT +
Preference number: 4 (lower is better)
Translates to: PALPLPASTKSYRVGQRARYPLG*EQRAQH
Trigger: ATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCT...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATAAGGCACTTGGCAAGCTaGGTCCAGGTGGCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: RNKGPGLGLFPRPPGQSIRHLAS*VQVAKS
Trigger: TGACTTCGCCACCTGGACTCAGCTTGCCAAGTGCCT...TATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSIGLAD*SPSVQD
Trigger: ATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAAT...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAGTTCAACTCCGTATCTaGCCAGTGACACTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSVQLRI*PVTLSL
Trigger: GAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAAC...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp ATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCGTTCAACTCCGTATCTaGCCAGTGACACTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: ILVQRGIKAPGWAYSQGPVQLRI*PVTLSL
Trigger: GAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAAC...GGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGATGCTGATAGGAGTATaGTGGATGCCTCTCAGACCA +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEEMLIGV*WMPLRP
Trigger: TGGTCTGAGAGGCATCCAGCATACTCCTATCAGCAT...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGCTCCTCAGGGCCCGCTaGTTTGTCAGTTTATACTTC +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQLLRAR*FVSLYF
Trigger: GAAGTATAAACTGACAAACCAGCGGGCCCTGAGGAG...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGCTGATAGGAGTATGCTaGATGCCTCTCAGACCAAAC +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEELIGVC*MPLRPN
Trigger: GTTTGGTCTGAGAGGCATCCAGCATACTCCTATCAG...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp ATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCTCTTCCTCCAGCAGGTaGATGGACTGGCTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: ILVQRGIKAPGWAYSQGPSSSSR*MDWLRK
Trigger: TTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGA...GGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATCCTAGCCCAGGCATaGTCTCCACACGGTACAGTA +
Preference number: 4 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSILAQA*SPHGTV
Trigger: TACTGTACCGTGTGGAGACCATGCCTGGGCTAGGAT...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTCTGGTGTGGGCCACTTaGGCTCAAGCTCCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: PASTKSYRVGQRASLSGGLVWAT*AQAPPC
Trigger: ACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAG...ACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp ATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCATCCCACAGCTTTTCTaGTGTGGGCCACTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: MSQSHPQGSILVQRGIKAIPQLF*CGPLGL
Trigger: GAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGAT...GGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCATCCCACAGCTTTTCTaGTGTGGGCCACTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGIPQLF*CGPLGL
Trigger: GAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGAT...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCAAGCTGAGTCCAGGTaGCGAAGTCATCATCTGTCT +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSQAESR*RSHHLS
Trigger: AGACAGATGATGACTTCGCCACCTGGACTCAGCTTG...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
3UTR CAA 72 bp CAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTaGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATA +
Preference number: 4 (lower is better)
Translates to: QHPGPERNKGPG*GLFPRPPGQSI
Trigger: TATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAAC +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLMASSS*GEYVSN
Trigger: GTTTGACACATACTCTCCTCATGAGGATGAGGCCAT...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAAC +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQMASSS*GEYVSN
Trigger: GTTTGACACATACTCTCCTCATGAGGATGAGGCCAT...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGCGGGGGCCACCATGTTaGGGAACAGCACCATGGCCT +
Preference number: 4 (lower is better)
Translates to: EKAKRRPGPVSKGLCVSLRGPPC*GTAPWP
Trigger: AGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCG...CAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTCGGGGGCCACCATGTTaGGGAACAGCACCATGGCCT +
Preference number: 4 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFRGPPC*GTAPWP
Trigger: AGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCG...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATCCGTATCTGCCCAGTaGCACTCAGCCTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQSVSAQ*HSASPF
Trigger: AAAAGGAGAGGCTGAGTGTCACTGGGCAGATACGGA...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106496.8
CDS-3UTR TCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTGGGAAACATCCGGGATaGTACACTCTCGGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFGKHPG*YTLGPG
Trigger: GCCGGGGCCGAGAGTGTATCATCCCGGATGTTTCCC...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCAAACCTCGGCCTCACTaGGCAGTCTGTGAATTTCCA +
Preference number: 4 (lower is better)
Translates to: HPGPERNKGPGLGLFPRPKPRPH*AVCEFP
Trigger: TGGAAATTCACAGACTGCTCAGTGAGGCCGAGGTTT...GGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAAGGCACTTGGCAAGCTaGGTCCAGGTGGCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTRHLAS*VQVAKS
Trigger: TGACTTCGCCACCTGGACTCAGCTTGCCAAGTGCCT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAAATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQIGLAD*SPSVQD
Trigger: ATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAAT...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAACCTCAGCAGAGCCTTTaGTGTGTCCTTGAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQPQQSL*CVLEVE
Trigger: TTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGG...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCAC +
Preference number: 4 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQIGPVP*NDSHRH
Trigger: GTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAAT...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAATGCTGATAGGAGTATaGTGGATGCCTCTCAGACCA +
Preference number: 4 (lower is better)
Translates to: QRASLSGGTQYPALQSPGMLIGV*WMPLRP
Trigger: TGGTCTGAGAGGCATCCAGCATACTCCTATCAGCAT...TCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGATCATAGTCTTGCTCTaGTTCTGGGTCTTCATTGGC +
Preference number: 4 (lower is better)
Translates to: PVPPSGQHPGPERNKGPGIIVLL*FWVFIG
Trigger: GCCAATGAAGACCCAGAACCAGAGCAAGACTATGAT...CCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCGCTGTGTCCTTGAGGTaGAAGGAACCCTCATCCTTC +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGAVSLR*KEPSSF
Trigger: GAAGGATGAGGGTTCCTTCCACCTCAAGGACACAGC...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCAGGCCTGGGAGGACAGGGTATGAAAAGAGTGGATCAGCTACCCAGGGATCCGCTGTGTCCTTGAGGTaGAAGGAACCCTCATCCTTC +
Preference number: 4 (lower is better)
Translates to: ARPGRTGYEKSGSATQGSAVSLR*KEPSSF
Trigger: GAAGGATGAGGGTTCCTTCCACCTCAAGGACACAGC...GGATCCCTGGGTAGCTGATCCACTCTTTTCATACCCTGTCCTCCCAGGCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGCTTATTGTCTGGAAGTaGGTCAGGGCTGAACTCAAT +
Preference number: 4 (lower is better)
Translates to: GLACLGVHSTQPCRVLEELIVWK*VRAELN
Trigger: ATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAG...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTTGTGGAGATACCCCTTaGGCTGAGAGCAGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: PLPASTKSYRVGQRASLSCGDTP*AESRER
Trigger: GCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACA...AGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAACGCCACCACATCCATTaGCTCCTCATAGTAGCCATC +
Preference number: 4 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQRHHIH*LLIVAI
Trigger: GATGGCTACTATGAGGAGCCAATGGATGTGGTGGCG...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp ATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCGCCACCACATCCATTaGCTCCTCATAGTAGCCATC +
Preference number: 4 (lower is better)
Translates to: MSQSHPQGSILVQRGIKARHHIH*LLIVAI
Trigger: GATGGCTACTATGAGGAGCCAATGGATGTGGTGGCG...GGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGCTGATAGGAGTATGCTaGATGCCTCTCAGACCAAAC +
Preference number: 4 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQLIGVC*MPLRPN
Trigger: GTTTGGTCTGAGAGGCATCCAGCATACTCCTATCAG...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAAACAGCTTTTCTGGTGTaGGCCACTTGGGCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQTAFLV*ATWAQA
Trigger: AGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGT...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCATCCCACAGCTTTTCTaGTGTGGGCCACTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASIPQLF*CGPLGL
Trigger: GAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGAT...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGTCTACATTCCTGAGCTaGACACCTGGAACTGTGTTG +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLSTFLS*TPGTVL
Trigger: CAACACAGTTCCAGGTGTCCAGCTCAGGAATGTAGA...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCAAGCTGAGTCCAGGTaGCGAAGTCATCATCTGTCT +
Preference number: 4 (lower is better)
Translates to: HPGPERNKGPGLGLFPRPQAESR*RSHHLS
Trigger: AGACAGATGATGACTTCGCCACCTGGACTCAGCTTG...GGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACTTCATTGGCCTCGCTaGTTGCTCTCCGAGTGTCCA +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTLHWPR*LLSECP
Trigger: TGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAG...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACTTCATTGGCCTCGCTaGTTGCTCTCCGAGTGTCCA +
Preference number: 4 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQLHWPR*LLSECP
Trigger: TGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAG...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCCCTTTGCTGTGTCCTTaGGGTGGAAGGAACCCTCAT +
Preference number: 4 (lower is better)
Translates to: LCESVSTWTPYGPVHQLGPLLCP*GGRNPH
Trigger: ATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGG...GCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCAT +
Preference number: 4 (lower is better)
Translates to: SVSTWTPYGPVHQLGTTVRYPLG*EQRAQH
Trigger: ATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCT...AACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTGACTGTCTACATTCCTaGGCTGGACACCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: PASTKSYRVGQRASLSGGDCLHS*AGHLEL
Trigger: CAGTTCCAGGTGTCCAGCTCAGGAATGTAGACAGTC...ACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCGACTGTCTACATTCCTaGGCTGGACACCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASDCLHS*AGHLEL
Trigger: CAGTTCCAGGTGTCCAGCTCAGGAATGTAGACAGTC...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp ATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCAAACCTCGGCCTCACTaGGCAGTCTGTGAATTTCCA +
Preference number: 4 (lower is better)
Translates to: MSQSHPQGSILVQRGIKAKPRPH*AVCEFP
Trigger: TGGAAATTCACAGACTGCTCAGTGAGGCCGAGGTTT...GGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATAGTTCAACTCCGTATCTaGCCAGTGACACTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: RNKGPGLGLFPRPPGQSIVQLRI*PVTLSL
Trigger: GAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAAC...TATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGTAGCCCTCCACTTTaGTGCAGAAGCGCCTGCGGC +
Preference number: 4 (lower is better)
Translates to: NKPALPLPASTKSYRVGQRSPPL*CRSACG
Trigger: GCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACG...TTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATCGTAGCCCTCCACTTTaGTGCAGAAGCGCCTGCGGC +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHRSPPL*CRSACG
Trigger: GCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACG...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp TGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGCGTAGCCCTCCACTTTaGTGCAGAAGCGCCTGCGGC +
Preference number: 4 (lower is better)
Translates to: WTKRRLRGDLVQCLKVSVRSPPL*CRSACG
Trigger: GCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACG...CACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATACAGGCCCCGGTGGTTaGCACGAACATCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHTGPGG*HEHPGP
Trigger: GGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGT...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCAGGCCTGGGAGGACAGGGTATGAAAAGAGTGGATCAGCTACCCAGGGATCCCTCCTCAGGGCCCGCTaGTTTGTCAGTTTATACTTC +
Preference number: 4 (lower is better)
Translates to: ARPGRTGYEKSGSATQGSLLRAR*FVSLYF
Trigger: GAAGTATAAACTGACAAACCAGCGGGCCCTGAGGAG...GGATCCCTGGGTAGCTGATCCACTCTTTTCATACCCTGTCCTCCCAGGCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCGTCTTGCTCTGGTTCTaGGTCTTCATTGGCCTCGCT +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASVLLWF*VFIGLA
Trigger: AGCGAGGCCAATGAAGACCCAGAACCAGAGCAAGAC...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGAGGACTATGACATaGATGCCTCGGCCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQLRTMT*MPRPCS
Trigger: GGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAA...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTGCTGTGTCCTTGAGGTaGAAGGAACCCTCATCCTTC +
Preference number: 4 (lower is better)
Translates to: PALPLPASTKSYRVGQRAAVSLR*KEPSSF
Trigger: GAAGGATGAGGGTTCCTTCCACCTCAAGGACACAGC...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCTCTTCCTCCAGCAGGTaGATGGACTGGCTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASSSSSR*MDWLRK
Trigger: TTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGA...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCGTGTGTTCATACCCCTaGTCATTCCAGGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGVCSYP*SFQAEM
Trigger: CATCTCTGCCTGGAATGACCAGGGGTATGAACACAC...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp ATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCTCTACATTCCTGAGCTaGACACCTGGAACTGTGTTG +
Preference number: 4 (lower is better)
Translates to: ILVQRGIKAPGWAYSQGPSTFLS*TPGTVL
Trigger: CAACACAGTTCCAGGTGTCCAGCTCAGGAATGTAGA...GGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTCAAGGGTCCTTGCTGTaGTCCAAAACCTCGGCCTCA +
Preference number: 4 (lower is better)
Translates to: PLPASTKSYRVGQRASLSQGSLL*SKTSAS
Trigger: TGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTG...AGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGCTCCACAGGCCCCGGTaGTTGCCACGAACATCCAGG +
Preference number: 4 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVLHRPR*LPRTSR
Trigger: CCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAG...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGGAAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCAT +
Preference number: 4 (lower is better)
Translates to: RRPGPVSKGLCVSLSAHGRYPLG*EQRAQH
Trigger: ATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCT...TCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGCATAGTAGCCATCAATaGAGACCGTTATCATCTGTG +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLHSSHQ*RPLSSV
Trigger: CACAGATGATAACGGTCTTCATTGATGGCTACTATG...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGAGTAGCCGTTCATGTTaGGGCCGACGATGCCAAAGT +
Preference number: 4 (lower is better)
Translates to: LPASTKSYRVGQRASLSGSSRSC*GRRCQS
Trigger: ACTTTGGCATCGTCGGCCTCAACATGAACGGCTACT...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGAGGCACTTGGCAAGCTaGGTCCAGGTGGCGAAGTCA +
Preference number: 4 (lower is better)
Translates to: EKAKRRPGPVSKGLCVSLRHLAS*VQVAKS
Trigger: TGACTTCGCCACCTGGACTCAGCTTGCCAAGTGCCT...CAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQIGLAD*SPSVQD
Trigger: ATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAAT...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPAPVGD*CLCAEG
Trigger: CCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGC...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGTCAAACACGCGCTTTaGCATCACGTGGCCCGTGGC +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHVKHAL*HHVARG
Trigger: GCCACGGGCCACGTGATGGCAAAGCGCGTGTTTGAC...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTCCTCAGCAGAGCCTTTaGTGTGTCCTTGAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: PLPASTKSYRVGQRASLSPQQSL*CVLEVE
Trigger: TTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGG...AGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGTTCAACTCCGTATCTaGCCAGTGACACTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: LPASTKSYRVGQRASLSGVQLRI*PVTLSL
Trigger: GAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAAC...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAAGCTGTGTCCTTGAGGTaGAAGGAACCCTCATCCTTC +
Preference number: 4 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQAVSLR*KEPSSF
Trigger: GAAGGATGAGGGTTCCTTCCACCTCAAGGACACAGC...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGTCTTCCTCCAGCAGGTaGATGGACTGGCTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKSSSSR*MDWLRK
Trigger: TTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGA...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGTCTTCCTCCAGCAGGTaGATGGACTGGCTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: LCVSLSAHGPHMGLSISWSSSSR*MDWLRK
Trigger: TTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGA...CCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAATCCTAGCCCAGGCATaGTCTCCACACGGTACAGTA +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTILAQA*SPHGTV
Trigger: TACTGTACCGTGTGGAGACCATGCCTGGGCTAGGAT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGATCCTAGCCCAGGCATaGTCTCCACACGGTACAGTA +
Preference number: 4 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQILAQA*SPHGTV
Trigger: TACTGTACCGTGTGGAGACCATGCCTGGGCTAGGAT...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCTCTACATTCCTGAGCTaGACACCTGGAACTGTGTTG +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGSTFLS*TPGTVL
Trigger: CAACACAGTTCCAGGTGTCCAGCTCAGGAATGTAGA...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCAAGCTGAGTCCAGGTaGCGAAGTCATCATCTGTCT +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASQAESR*RSHHLS
Trigger: AGACAGATGATGACTTCGCCACCTGGACTCAGCTTG...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCCCCACCACCAAAAAGTaGTTCTTCTTCCGAAATAAT +
Preference number: 4 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGPTTKK*FFFRNN
Trigger: ATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGG...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp ATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCACTGGCTCAGGAAACTaGAAAAATCCACGGCAATGT +
Preference number: 4 (lower is better)
Translates to: MSQSHPQGSILVQRGIKATGSGN*KNPRQC
Trigger: ACATTGCCGTGGATTTTTTCAGTTTCCTGAGCCAGT...GGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTGACTGTCTACATTCCTaGGCTGGACACCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: SVSTWTPYGPVHQLGTTVDCLHS*AGHLEL
Trigger: CAGTTCCAGGTGTCCAGCTCAGGAATGTAGACAGTC...AACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAAAACCTCGGCCTCACTaGGCAGTCTGTGAATTTCCA +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTKPRPH*AVCEFP
Trigger: TGGAAATTCACAGACTGCTCAGTGAGGCCGAGGTTT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp TCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTCCTCAGCAGAGCCTTTaGTGTGTCCTTGAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: SVSTWTPYGPVHQLGTTVPQQSL*CVLEVE
Trigger: TTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGG...AACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCATGCTGATAGGAGTATaGTGGATGCCTCTCAGACCA +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASMLIGV*WMPLRP
Trigger: TGGTCTGAGAGGCATCCAGCATACTCCTATCAGCAT...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCATGCTGATAGGAGTATaGTGGATGCCTCTCAGACCA +
Preference number: 4 (lower is better)
Translates to: LCESVSTWTPYGPVHQLGMLIGV*WMPLRP
Trigger: TGGTCTGAGAGGCATCCAGCATACTCCTATCAGCAT...GCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCATCATAGTCTTGCTCTaGTTCTGGGTCTTCATTGGC +
Preference number: 4 (lower is better)
Translates to: SILVQRGIKAPGWAYSQGIIVLL*FWVFIG
Trigger: GCCAATGAAGACCCAGAACCAGAGCAAGACTATGAT...GCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTACACTTTGCTTCTACTaGAGTATACTTCCACATCCA +
Preference number: 4 (lower is better)
Translates to: VGQRASLSGGTQYPALQSTLCFY*SILPHP
Trigger: TGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTTCTACATTCCTGAGCTaGACACCTGGAACTGTGTTG +
Preference number: 4 (lower is better)
Translates to: PALPLPASTKSYRVGQRASTFLS*TPGTVL
Trigger: CAACACAGTTCCAGGTGTCCAGCTCAGGAATGTAGA...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGCCCACCACCAAAAAGTaGTTCTTCTTCCGAAATAAT +
Preference number: 4 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLPTTKK*FFFRNN
Trigger: ATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGG...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGCTTCATTGGCCTCGCTaGTTGCTCTCCGAGTGTCCA +
Preference number: 4 (lower is better)
Translates to: WTKRRLRGDLVQCLKVSVLHWPR*LLSECP
Trigger: TGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAG...CACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAAC +
Preference number: 4 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTMASSS*GEYVSN
Trigger: GTTTGACACATACTCTCCTCATGAGGATGAGGCCAT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAAC +
Preference number: 4 (lower is better)
Translates to: LPASTKSYRVGQRASLSGMASSS*GEYVSN
Trigger: GTTTGACACATACTCTCCTCATGAGGATGAGGCCAT...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTAGTAGCCGTTCATGTTaGGGCCGACGATGCCAAAGT +
Preference number: 4 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFSSRSC*GRRCQS
Trigger: ACTTTGGCATCGTCGGCCTCAACATGAACGGCTACT...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTGACTGTCTACATTCCTaGGCTGGACACCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFDCLHS*AGHLEL
Trigger: CAGTTCCAGGTGTCCAGCTCAGGAATGTAGACAGTC...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GACCATCTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCG +
Preference number: 4 (lower is better)
Translates to: DHLYPVLEIWTKRRLRGDCCRSA*GGGSTP
Trigger: CGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCA...GTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAGATGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCATCATAGTCTTGCTCTaGTTCTGGGTCTTCATTGGC +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASIIVLL*FWVFIG
Trigger: GCCAATGAAGACCCAGAACCAGAGCAAGACTATGAT...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTTATTGTCTGGAAGTaGGTCAGGGCTGAACTCAAT +
Preference number: 4 (lower is better)
Translates to: ALPLPASTKSYRVGQRASLIVWK*VRAELN
Trigger: ATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAG...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTCTTATTGTCTGGAAGTaGGTCAGGGCTGAACTCAAT +
Preference number: 4 (lower is better)
Translates to: PALPLPASTKSYRVGQRALIVWK*VRAELN
Trigger: ATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAG...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp ATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTTGTGGAGATACCCCTTaGGCTGAGAGCAGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: IWTKRRLRGDLVQCLKVSCGDTP*AESRER
Trigger: GCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACA...AGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGCTGATAGGAGTATGCTaGATGCCTCTCAGACCAAAC +
Preference number: 4 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKLIGVC*MPLRPN
Trigger: GTTTGGTCTGAGAGGCATCCAGCATACTCCTATCAG...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp TGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTTTTCTTCCTCCAGCAGGTaGATGGACTGGCTCAGGAAA +
Preference number: 4 (lower is better)
Translates to: CQHMDPIWACPSVGHNSFSSSSR*MDWLRK
Trigger: TTTCCTGAGCCAGTCCATCCACCTGCTGGAGGAAGA...AAAACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGCAAGGGTCCTTGCTGTaGTCCAAAACCTCGGCCTCA +
Preference number: 4 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVQGSLL*SKTSAS
Trigger: TGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTG...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGCCTTTGCTGTGTCCTTaGGGTGGAAGGAACCCTCAT +
Preference number: 4 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVPLLCP*GGRNPH
Trigger: ATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGG...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATCCTTTGCTGTGTCCTTaGGGTGGAAGGAACCCTCAT +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHPLLCP*GGRNPH
Trigger: ATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGG...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAAACTGGCTCAGGAAACTaGAAAAATCCACGGCAATGT +
Preference number: 4 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQTGSGN*KNPRQC
Trigger: ACATTGCCGTGGATTTTTTCAGTTTCCTGAGCCAGT...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GACCATCTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACGGGAAACATCCGGGATaGTACACTCTCGGCCCCGGC +
Preference number: 4 (lower is better)
Translates to: DHLYPVLEIWTKRRLRGDGKHPG*YTLGPG
Trigger: GCCGGGGCCGAGAGTGTATCATCCCGGATGTTTCCC...GTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAGATGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAATCCCATTTGAGTCCTTaGCTTCCTTGGTCCCCTCCA +
Preference number: 4 (lower is better)
Translates to: NKPALPLPASTKSYRVGQSHLSP*LPWSPP
Trigger: TGGAGGGGACCAAGGAAGTCAAGGACTCAAATGGGA...TTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106494.3
CDS-3UTR GCA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVIGLAD*SPSVQD
Trigger: ATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAAT...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATCCTCAGCAGAGCCTTTaGTGTGTCCTTGAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHPQQSL*CVLEVE
Trigger: TTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGG...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GACCATCTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACACAGGCCCCGGTGGTTaGCACGAACATCCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: DHLYPVLEIWTKRRLRGDTGPGG*HEHPGP
Trigger: GGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGT...GTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAGATGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGCTCCTCAGGGCCCGCTaGTTTGTCAGTTTATACTTC +
Preference number: 4 (lower is better)
Translates to: EKAKRRPGPVSKGLCVSLLLRAR*FVSLYF
Trigger: GAAGTATAAACTGACAAACCAGCGGGCCCTGAGGAG...CAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGATCATAGTCTTGCTCTaGTTCTGGGTCTTCATTGGC +
Preference number: 4 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKIIVLL*FWVFIG
Trigger: GCCAATGAAGACCCAGAACCAGAGCAAGACTATGAT...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAAGCTGTGTCCTTGAGGTaGAAGGAACCCTCATCCTTC +
Preference number: 4 (lower is better)
Translates to: NKPALPLPASTKSYRVGQAVSLR*KEPSSF
Trigger: GAAGGATGAGGGTTCCTTCCACCTCAAGGACACAGC...TTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACTTATTGTCTGGAAGTaGGTCAGGGCTGAACTCAAT +
Preference number: 4 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQLIVWK*VRAELN
Trigger: ATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAG...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGCTTATTGTCTGGAAGTaGGTCAGGGCTGAACTCAAT +
Preference number: 4 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKLIVWK*VRAELN
Trigger: ATTGAGTTCAGCCCTGACCCACTTCCAGACAATAAG...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGCCACCACATCCATTaGCTCCTCATAGTAGCCATC +
Preference number: 4 (lower is better)
Translates to: NKPALPLPASTKSYRVGQRHHIH*LLIVAI
Trigger: GATGGCTACTATGAGGAGCCAATGGATGTGGTGGCG...TTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGCGCCACCACATCCATTaGCTCCTCATAGTAGCCATC +
Preference number: 4 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVRHHIH*LLIVAI
Trigger: GATGGCTACTATGAGGAGCCAATGGATGTGGTGGCG...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTATCCCACAGCTTTTCTaGTGTGGGCCACTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSIPQLF*CGPLGL
Trigger: GAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGAT...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGGACAAGCTGAGTCCAGGTaGCGAAGTCATCATCTGTCT +
Preference number: 4 (lower is better)
Translates to: RRPGPVSKGLCVSLSAHGQAESR*RSHHLS
Trigger: AGACAGATGATGACTTCGCCACCTGGACTCAGCTTG...TCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACCTCCACAGGCCCCGGTaGTTGCCACGAACATCCAGG +
Preference number: 4 (lower is better)
Translates to: FHVKNKPALPLPASTKSYLHRPR*LPRTSR
Trigger: CCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAG...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGCATAGTAGCCATCAATaGAGACCGTTATCATCTGTG +
Preference number: 4 (lower is better)
Translates to: LPASTKSYRVGQRASLSGHSSHQ*RPLSSV
Trigger: CACAGATGATAACGGTCTTCATTGATGGCTACTATG...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGCATAGTAGCCATCAATaGAGACCGTTATCATCTGTG +
Preference number: 4 (lower is better)
Translates to: LCVSLSAHGPHMGLSISWHSSHQ*RPLSSV
Trigger: CACAGATGATAACGGTCTTCATTGATGGCTACTATG...CCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTGACTGTCTACATTCCTaGGCTGGACACCTGGAACTG +
Preference number: 4 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSDCLHS*AGHLEL
Trigger: CAGTTCCAGGTGTCCAGCTCAGGAATGTAGACAGTC...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTTTGTATTTTCCCATTTaGGTCCTTGACTTCCTTGGT +
Preference number: 4 (lower is better)
Translates to: PALPLPASTKSYRVGQRALYFPI*VLDFLG
Trigger: ACCAAGGAAGTCAAGGACTCAAATGGGAAAATACAA...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000106494.3
CDS-3UTR GCA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTTCGGGTCCTTGCAGCTaGACACGCTCCCGTAGCCCT +
Preference number: 4 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPSGPCS*TRSRSP
Trigger: AGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGA...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACTTTGCTTCTACTaGAGTATACTTCCACATCCA +
Preference number: 4 (lower is better)
Translates to: PASTKSYRVGQRASLSGGTLCFY*SILPHP
Trigger: TGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGT...ACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGTGTGTTCATACCCCTaGTCATTCCAGGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHVCSYP*SFQAEM
Trigger: CATCTCTGCCTGGAATGACCAGGGGTATGAACACAC...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTATCCTAGCCCAGGCATaGTCTCCACACGGTACAGTA +
Preference number: 4 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSILAQA*SPHGTV
Trigger: TACTGTACCGTGTGGAGACCATGCCTGGGCTAGGAT...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTGTCAAACACGCGCTTTaGCATCACGTGGCCCGTGGC +
Preference number: 4 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPVKHAL*HHVARG
Trigger: GCCACGGGCCACGTGATGGCAAAGCGCGTGTTTGAC...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGATGCTGATAGGAGTATaGTGGATGCCTCTCAGACCA +
Preference number: 4 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVMLIGV*WMPLRP
Trigger: TGGTCTGAGAGGCATCCAGCATACTCCTATCAGCAT...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATCTGATAGGAGTATGCTaGATGCCTCTCAGACCAAAC +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHLIGVC*MPLRPN
Trigger: GTTTGGTCTGAGAGGCATCCAGCATACTCCTATCAG...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GACCATCTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTGTGGGCCACTTaGGCTCAAGCTCCTCCTTGT +
Preference number: 4 (lower is better)
Translates to: DHLYPVLEIWTKRRLRGDLVWAT*AQAPPC
Trigger: ACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAG...GTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAGATGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGCCCACCACCAAAAAGTaGTTCTTCTTCCGAAATAAT +
Preference number: 4 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQPTTKK*FFFRNN
Trigger: ATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGG...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCCTTTGCTGTGTCCTTaGGGTGGAAGGAACCCTCAT +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVPLLCP*GGRNPH
Trigger: ATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGG...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGACTGGCTCAGGAAACTaGAAAAATCCACGGCAATGT +
Preference number: 4 (lower is better)
Translates to: WTKRRLRGDLVQCLKVSVTGSGN*KNPRQC
Trigger: ACATTGCCGTGGATTTTTTCAGTTTCCTGAGCCAGT...CACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCAGTAGCCGTTCATGTTaGGGCCGACGATGCCAAAGT +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVSSRSC*GRRCQS
Trigger: ACTTTGGCATCGTCGGCCTCAACATGAACGGCTACT...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGAAACCTCGGCCTCACTaGGCAGTCTGTGAATTTCCA +
Preference number: 4 (lower is better)
Translates to: YPVLEIWTKRRLRGDLVQKPRPH*AVCEFP
Trigger: TGGAAATTCACAGACTGCTCAGTGAGGCCGAGGTTT...CTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp CCCAAAGAGGTCCTGGGAACTCTCCTGCTCTTCTTTGACAAGGAAGTAAATAAACCTCAGCAGAGCCTTTaGTGTGTCCTTGAGGTGGAA +
Preference number: 4 (lower is better)
Translates to: PKEVLGTLLLFFDKEVNKPQQSL*CVLEVE
Trigger: TTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGG...TTTATTTACTTCCTTGTCAAAGAAGAGCAGGAGAGTTCCCAGGACCTCTTTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR GCA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCAC +
Preference number: 4 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPIGPVP*NDSHRH
Trigger: GTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAAT...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATATCATAGTCTTGCTCTaGTTCTGGGTCTTCATTGGC +
Preference number: 4 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHIIVLL*FWVFIG
Trigger: GCCAATGAAGACCCAGAACCAGAGCAAGACTATGAT...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp TCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTACACTTTGCTTCTACTaGAGTATACTTCCACATCCA +
Preference number: 4 (lower is better)
Translates to: SVSTWTPYGPVHQLGTTVTLCFY*SILPHP
Trigger: TGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGT...AACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTACGCCACCACATCCATTaGCTCCTCATAGTAGCCATC +
Preference number: 4 (lower is better)
Translates to: VKNKPALPLPASTKSYRVRHHIH*LLIVAI
Trigger: GATGGCTACTATGAGGAGCCAATGGATGTGGTGGCG...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGATAGGAGTATGCTaGATGCCTCTCAGACCAAAC +
Preference number: 4 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSLIGVC*MPLRPN
Trigger: GTTTGGTCTGAGAGGCATCCAGCATACTCCTATCAG...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCATCCTAGCCCAGGCATaGTCTCCACACGGTACAGTA +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVILAQA*SPHGTV
Trigger: TACTGTACCGTGTGGAGACCATGCCTGGGCTAGGAT...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAACAGCTTTTCTGGTGTaGGCCACTTGGGCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: VKNKPALPLPASTKSYRVTAFLV*ATWAQA
Trigger: AGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGT...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GACCATCTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACATCCCACAGCTTTTCTaGTGTGGGCCACTTGGGCTC +
Preference number: 4 (lower is better)
Translates to: DHLYPVLEIWTKRRLRGDIPQLF*CGPLGL
Trigger: GAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGAT...GTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAGATGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACCAAGGGTCCTTGCTGTaGTCCAAAACCTCGGCCTCA +
Preference number: 4 (lower is better)
Translates to: FHVKNKPALPLPASTKSYQGSLL*SKTSAS
Trigger: TGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTG...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACCCTTTGCTGTGTCCTTaGGGTGGAAGGAACCCTCAT +
Preference number: 4 (lower is better)
Translates to: FHVKNKPALPLPASTKSYPLLCP*GGRNPH
Trigger: ATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGG...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGTGTGTTCATACCCCTaGTCATTCCAGGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: VKNKPALPLPASTKSYRVVCSYP*SFQAEM
Trigger: CATCTCTGCCTGGAATGACCAGGGGTATGAACACAC...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCGTGTGTTCATACCCCTaGTCATTCCAGGCAGAGATG +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVVCSYP*SFQAEM
Trigger: CATCTCTGCCTGGAATGACCAGGGGTATGAACACAC...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp AGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCACCACCAAAAAGTaGTTCTTCTTCCGAAATAAT +
Preference number: 4 (lower is better)
Translates to: RRPGPVSKGLCVSLSAHGPTTKK*FFFRNN
Trigger: ATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGG...TCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAAC +
Preference number: 4 (lower is better)
Translates to: VKNKPALPLPASTKSYRVMASSS*GEYVSN
Trigger: GTTTGACACATACTCTCCTCATGAGGATGAGGCCAT...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACCTCCTCAGGGCCCGCTaGTTTGTCAGTTTATACTTC +
Preference number: 4 (lower is better)
Translates to: FHVKNKPALPLPASTKSYLLRAR*FVSLYF
Trigger: GAAGTATAAACTGACAAACCAGCGGGCCCTGAGGAG...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp TGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGACACTTTGCTTCTACTaGAGTATACTTCCACATCCA +
Preference number: 4 (lower is better)
Translates to: WTKRRLRGDLVQCLKVSVTLCFY*SILPHP
Trigger: TGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGT...CACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CCCAAAGAGGTCCTGGGAACTCTCCTGCTCTTCTTTGACAAGGAAGTAAATAAATCTACATTCCTGAGCTaGACACCTGGAACTGTGTTG +
Preference number: 4 (lower is better)
Translates to: PKEVLGTLLLFFDKEVNKSTFLS*TPGTVL
Trigger: CAACACAGTTCCAGGTGTCCAGCTCAGGAATGTAGA...TTTATTTACTTCCTTGTCAAAGAAGAGCAGGAGAGTTCCCAGGACCTCTTTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCACTGGCTCAGGAAACTaGAAAAATCCACGGCAATGT +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVTGSGN*KNPRQC
Trigger: ACATTGCCGTGGATTTTTTCAGTTTCCTGAGCCAGT...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCATAGTAGCCATCAATaGAGACCGTTATCATCTGTG +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVHSSHQ*RPLSSV
Trigger: CACAGATGATAACGGTCTTCATTGATGGCTACTATG...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR TCA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACTGGCTCAGGAAACTaGAAAAATCCACGGCAATGT +
Preference number: 4 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPTGSGN*KNPRQC
Trigger: ACATTGCCGTGGATTTTTTCAGTTTCCTGAGCCAGT...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp CTTTATCCAGTTTTGGAAATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCACACTTTGCTTCTACTaGAGTATACTTCCACATCCA +
Preference number: 4 (lower is better)
Translates to: LYPVLEIWTKRRLRGDLVTLCFY*SILPHP
Trigger: TGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGT...GACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGATTTCCAAAACTGGATAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CCA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTACCCACCACCAAAAAGTaGTTCTTCTTCCGAAATAAT +
Preference number: 4 (lower is better)
Translates to: VKNKPALPLPASTKSYRVPTTKK*FFFRNN
Trigger: ATTATTTCGGAAGAAGAACCACTTTTTGGTGGTGGG...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS GCA 90 bp GCGTCGGGTCCTTGCAGCTGCACACGCTCCCGTAGCCCTCCACTTTaGTGCAGAAGCGCCTGCGGCGGCGGTTCAACTCCGTATCTGCCC +
Preference number: 5 (lower is better)
Translates to: ASGPCSCTRSRSPPL*CRSACGGGSTPYLP
Trigger: GGGCAGATACGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGACGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 90 bp CCCACGAAGGCCCAGGTGTCCCTCCAGCCAAGGGCAGGGCCTGCCTaGCTTCCCAGGCTCCTCAGCAGAGCCTTTGCTGTGTCCTTGAGG +
Preference number: 5 (lower is better)
Translates to: PTKAQVSLQPRAGPA*LPRLLSRAFAVSLR
Trigger: CCTCAAGGACACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGTCAGGCAGGCCCTGCCCTTGGCTGGAGGGACACCTGGGCCTTCGTGGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 90 bp TGGCCCGTGGCCTGGTTGAGGACTATGACATGGATGCCTCGGCCCTaGTCCCGGGCTTCATCCTCGAGCACCGTGGTGCCATCCACAGCC +
Preference number: 5 (lower is better)
Translates to: WPVAWLRTMTWMPRP*SRASSSSTVVPSTA
Trigger: GGCTGTGGATGGCACCACGGTGCTCGAGGATGAAGCCCGGGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAACCAGGCCACGGGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGCACAGGCCCCGGTGGTaGCCACGAACATCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: PVPPSGQHPGPERNKGPGHRPRW*PRTSRS
Trigger: GGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTG...CCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 90 bp TCGTCCCACGAAGGCCCAGGTGTCCCTCCAGCCAAGGGCAGGGCCTaGCTGACTTCCCAGGCTCCTCAGCAGAGCCTTTGCTGTGTCCTT +
Preference number: 5 (lower is better)
Translates to: SSHEGPGVPPAKGRA*LTSQAPQQSLCCVL
Trigger: AAGGACACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGTCAGGCAGGCCCTGCCCTTGGCTGGAGGGACACCTGGGCCTTCGTGGGACGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 90 bp TCGGGTCCTTGCAGCTGCACACGCTCCCGTAGCCCTCCACTTTGCTaGAGAAGCGCCTGCGGCGGCGGTTCAACTCCGTATCTGCCCAGT +
Preference number: 5 (lower is better)
Translates to: SGPCSCTRSRSPPLC*RSACGGGSTPYLPS
Trigger: ACTGGGCAGATACGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCGTGTGCAGCTGCAAGGACCCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCGGGGGCCACCATGTaGAGGAACAGCACCATGGCC +
Preference number: 5 (lower is better)
Translates to: VGQRASLSGGTQYPALQSPGATM*RNSTMA
Trigger: GGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGG...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGCACAGGCCCCGGTGGTaGCCACGAACATCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLHRPRW*PRTSRS
Trigger: GGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTG...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 90 bp AGCTGCACACGCTCCCGTAGCCCTCCACTTTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCGTATCTGCCCAGTGACACTCAGCCT +
Preference number: 5 (lower is better)
Translates to: SCTRSRSPPLCCRSA*GGGSTPYLPSDTQP
Trigger: AGGCTGAGTGTCACTGGGCAGATACGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCGTGTGCAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGTGTCAAACACGCGCTTaGCCATCACGTGGCCCGTGG +
Preference number: 5 (lower is better)
Translates to: GLACLGVHSTQPCRVLEECQTRA*PSRGPW
Trigger: CCACGGGCCACGTGATGGCAAAGCGCGTGTTTGACA...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGTCTGGTGTGGGCCACTaGGGCTCAAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: GLACLGVHSTQPCRVLEESGVGH*GSSSSL
Trigger: CAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGA...CTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCGGGGGCCACCATGTaGAGGAACAGCACCATGGCC +
Preference number: 5 (lower is better)
Translates to: SGQHPGPERNKGPGLGLFPGATM*RNSTMA
Trigger: GGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGG...GAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAACACAGGCCCCGGTGGTaGCCACGAACATCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQHRPRW*PRTSRS
Trigger: GGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTG...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGGCTCCTTCTTCCTTaGGGGGTGGCTCCAGGAAAA +
Preference number: 5 (lower is better)
Translates to: RASLSGGTQYPALQSPGGGLLLP*GVAPGK
Trigger: TTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCC...TCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS GCA 90 bp TGCTTCTACTGGAGTATACTTCCACATCCAGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGGACTCCAGACGTCCTAGGGCCTCAT +
Preference number: 5 (lower is better)
Translates to: CFYWSILPHPAPVGD*CLCAEGTPDVLGPH
Trigger: ATGAGGCCCTAGGACGTCTGGAGTCCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGCTGGATGTGGAAGTATACTCCAGTAGAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCATGTCAAACACGCGCTTaGCCATCACGTGGCCCGTGG +
Preference number: 5 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSCQTRA*PSRGPW
Trigger: CCACGGGCCACGTGATGGCAAAGCGCGTGTTTGACA...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTCCGGGGGCCACCATGTaGAGGAACAGCACCATGGCC +
Preference number: 5 (lower is better)
Translates to: PALPLPASTKSYRVGQRAPGATM*RNSTMA
Trigger: GGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGG...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTGCCTCCGGAAACAGGTaGAAAGTGGCAGTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: VGQRASLSGGTQYPALQSASGNR*KVAVRL
Trigger: CAGCCTCACTGCCACTTTCAACCTGTTTCCGGAGGC...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCATCTGGTGTGGGCCACTaGGGCTCAAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSSGVGH*GSSSSL
Trigger: CAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGA...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTCACAGGCCCCGGTGGTaGCCACGAACATCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: PALPLPASTKSYRVGQRAHRPRW*PRTSRS
Trigger: GGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTG...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS GCA 90 bp TTCTACTGGAGTATACTTCCACATCCAGCACCCGTCGGGGACTGCTaGCTCTGCGCCGAGGGGACTCCAGACGTCCTAGGGCCTCATCAT +
Preference number: 5 (lower is better)
Translates to: FYWSILPHPAPVGDC*LCAEGTPDVLGPHH
Trigger: ATGATGAGGCCCTAGGACGTCTGGAGTCCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGCTGGATGTGGAAGTATACTCCAGTAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACCGGGGGCCACCATGTaGAGGAACAGCACCATGGCC +
Preference number: 5 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTPGATM*RNSTMA
Trigger: GGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGG...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCGCCTCCGGAAACAGGTaGAAAGTGGCAGTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: HPGPERNKGPGLGLFPRPASGNR*KVAVRL
Trigger: CAGCCTCACTGCCACTTTCAACCTGTTTCCGGAGGC...GGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACACAGGCCCCGGTGGTaGCCACGAACATCCAGGTCC +
Preference number: 5 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTHRPRW*PRTSRS
Trigger: GGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTG...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAGGGCTCCTTCTTCCTTaGGGGGTGGCTCCAGGAAAA +
Preference number: 5 (lower is better)
Translates to: GQHPGPERNKGPGLGLFPGLLLP*GVAPGK
Trigger: TTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCC...TGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 90 bp CCGGGGGCCACCATGTTGAGGAACAGCACCATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAACACGCGCTTTGCCATCACGTGGCCC +
Preference number: 5 (lower is better)
Translates to: PGATMLRNSTMASSS*GEYVSNTRFAITWP
Trigger: GGGCCACGTGATGGCAAAGCGCGTGTTTGACACATACTCTCCTCATGAGGATGAGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 90 bp CATCCTTCACCGTGCAGATCAGCACGCGGCCGGGGGCCACCATGTTaGGGAACAGCACCATGGCCTCATCCTCATGAGGAGAGTATGTGT +
Preference number: 5 (lower is better)
Translates to: HPSPCRSARGRGPPC*GTAPWPHPHEESMC
Trigger: ACACATACTCTCCTCATGAGGATGAGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGGCCGCGTGCTGATCTGCACGGTGAAGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 90 bp CTGCCTGACTTCCCAGGCTCCTCAGCAGAGCCTTTGCTGTGTCCTTaGGGTGGAAGGAACCCTCATCCTTCACCGTGCAGATCAGCACGC +
Preference number: 5 (lower is better)
Translates to: LPDFPGSSAEPLLCP*GGRNPHPSPCRSAR
Trigger: GCGTGCTGATCTGCACGGTGAAGGATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGTCAGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATGGCCCGTGGCCTGGTaGAGGACTATGACATGGATG +
Preference number: 5 (lower is better)
Translates to: RGIKAPGWAYSQGPQDSQWPVAW*RTMTWM
Trigger: CATCCATGTCATAGTCCTCAACCAGGCCACGGGCCA...TTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATATGTCAAACACGCGCTTaGCCATCACGTGGCCCGTGG +
Preference number: 5 (lower is better)
Translates to: RNKGPGLGLFPRPPGQSICQTRA*PSRGPW
Trigger: CCACGGGCCACGTGATGGCAAAGCGCGTGTTTGACA...TATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAGCCTTTGCTGTGTCCTaGAGGTGGAAGGAACCCTCA +
Preference number: 5 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSAFAVS*RWKEPS
Trigger: TGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGC...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCACAGCCACAGGCACATaGAGGACCTTATTGTCTGGA +
Preference number: 5 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGTATGT*RTLLSG
Trigger: TCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGT...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTAGAACCACAGCAAACTaGGCCTCCGGAAACAGGTTG +
Preference number: 5 (lower is better)
Translates to: VGQRASLSGGTQYPALQSRTTAN*ASGNRL
Trigger: CAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTTCTGGTGTGGGCCACTaGGGCTCAAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: PALPLPASTKSYRVGQRASGVGH*GSSSSL
Trigger: CAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGA...AGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCTCTGGTGTGGGCCACTaGGGCTCAAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: LCESVSTWTPYGPVHQLGSGVGH*GSSSSL
Trigger: CAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGA...GCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGTCTTCACAAGGGTCCTaGCTGTGGTCCAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: LVQRGIKAPGWAYSQGPQSSQGS*LWSKTS
Trigger: CGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGA...CTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGGAGGCAGGATCAACTTGATGTaGACAATGACGGTCACCAGC +
Preference number: 5 (lower is better)
Translates to: ASLSGGTQYPALQSPGGGRINLM*TMTVTS
Trigger: GCTGGTGACCGTCATTGTCAACATCAAGTTGATCCT...GCCTCCTCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAATATGGCCCGTGGCCTGGTaGAGGACTATGACATGGATG +
Preference number: 5 (lower is better)
Translates to: RNKGPGLGLFPRPPGQSIWPVAW*RTMTWM
Trigger: CATCCATGTCATAGTCCTCAACCAGGCCACGGGCCA...TATTGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTTGTCAAACACGCGCTTaGCCATCACGTGGCCCGTGG +
Preference number: 5 (lower is better)
Translates to: PLPASTKSYRVGQRASLSCQTRA*PSRGPW
Trigger: CCACGGGCCACGTGATGGCAAAGCGCGTGTTTGACA...AGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGTGTCAAACACGCGCTTaGCCATCACGTGGCCCGTGG +
Preference number: 5 (lower is better)
Translates to: LCVSLSAHGPHMGLSISWCQTRA*PSRGPW
Trigger: CCACGGGCCACGTGATGGCAAAGCGCGTGTTTGACA...CCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTAGGGCAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTACAGCCACAGGCACATaGAGGACCTTATTGTCTGGA +
Preference number: 5 (lower is better)
Translates to: VGQRASLSGGTQYPALQSTATGT*RTLLSG
Trigger: TCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGT...ACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTGCCCTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCGCCTCCGGAAACAGGTaGAAAGTGGCAGTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: LCESVSTWTPYGPVHQLGASGNR*KVAVRL
Trigger: CAGCCTCACTGCCACTTTCAACCTGTTTCCGGAGGC...GCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGTGTCCAGGATCAACTaGATGTTGACAATGACGGTC +
Preference number: 5 (lower is better)
Translates to: VPPSGQHPGPERNKGPGLVSRIN*MLTMTV
Trigger: GACCGTCATTGTCAACATCAAGTTGATCCTGGACAC...CAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CAACGGGCTAGCCTGTCTGGGGGTACACAGTACCCAGCCCTGCAGAGTCCTGGAGTGTCCAGGATCAACTaGATGTTGACAATGACGGTC +
Preference number: 5 (lower is better)
Translates to: QRASLSGGTQYPALQSPGVSRIN*MLTMTV
Trigger: GACCGTCATTGTCAACATCAAGTTGATCCTGGACAC...TCCAGGACTCTGCAGGGCTGGGTACTGTGTACCCCCAGACAGGCTAGCCCGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCGGCCTCATCATAGTCTaGCTCTGGTTCTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: SGQHPGPERNKGPGLGLFGLIIV*LWFWVF
Trigger: GAAGACCCAGAACCAGAGCAAGACTATGATGAGGCC...GAATAGGCCCAACCCGGGGCCTTTATTCCTCTCTGGACCAGGATGCTGCCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGTGGCCCGTGGCCTGGTaGAGGACTATGACATGGATG +
Preference number: 5 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKWPVAW*RTMTWM
Trigger: CATCCATGTCATAGTCCTCAACCAGGCCACGGGCCA...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGCCTCCGGAAACAGGTaGAAAGTGGCAGTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: PLPASTKSYRVGQRASLSASGNR*KVAVRL
Trigger: CAGCCTCACTGCCACTTTCAACCTGTTTCCGGAGGC...AGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAGGGCTCCTTCTTCCTTaGGGGGTGGCTCCAGGAAAA +
Preference number: 5 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTGLLLP*GVAPGK
Trigger: TTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCC...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGGGCTCCTTCTTCCTTaGGGGGTGGCTCCAGGAAAA +
Preference number: 5 (lower is better)
Translates to: LCVSLSAHGPHMGLSISWGLLLP*GVAPGK
Trigger: TTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCC...CCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 90 bp CTTCATCCTCGAGCACCGTGGTGCCATCCACAGCCACATACACTTTaGTTCTACTGGAGTATACTTCCACATCCAGCACCCGTCGGGGAC +
Preference number: 5 (lower is better)
Translates to: LHPRAPWCHPQPHTL*FYWSILPHPAPVGD
Trigger: GTCCCCGACGGGTGCTGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGTATGTGGCTGTGGATGGCACCACGGTGCTCGAGGATGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAAGCCTTTGCTGTGTCCTaGAGGTGGAAGGAACCCTCA +
Preference number: 5 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQAFAVS*RWKEPS
Trigger: TGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGC...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTGCCTCCGGAAACAGGTaGAAAGTGGCAGTGAGGCTG +
Preference number: 5 (lower is better)
Translates to: SVSTWTPYGPVHQLGTTVASGNR*KVAVRL
Trigger: CAGCCTCACTGCCACTTTCAACCTGTTTCCGGAGGC...AACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCAGAACCACAGCAAACTaGGCCTCCGGAAACAGGTTG +
Preference number: 5 (lower is better)
Translates to: LCESVSTWTPYGPVHQLGRTTAN*ASGNRL
Trigger: CAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCT...GCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCTCTTCACAAGGGTCCTaGCTGTGGTCCAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: ALPLPASTKSYRVGQRASSSQGS*LWSKTS
Trigger: CGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGA...GCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS TCA 90 bp GTGTGGGCCACTTGGGCTCAAGCTCCTCCTTGTATAAAGATTTCCTaGGCACCCATCCTAGCCCAGGCATGGTCTCCACACGGTACAGTA +
Preference number: 5 (lower is better)
Translates to: VWATWAQAPPCIKIS*APILAQAWSPHGTV
Trigger: TACTGTACCGTGTGGAGACCATGCCTGGGCTAGGATGGGTGCTCAGGAAATCTTTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 90 bp GAGCAGAGAGCGCAGCATCCTGTACAGGTAATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCACATTGAGGACCTTATTGTCTGGAAG +
Preference number: 5 (lower is better)
Translates to: EQRAQHPVQVIGPVP*NDSHRHIEDLIVWK
Trigger: CTTCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAATTACCTGTACAGGATGCTGCGCTCTCTGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CCA 90 bp TGTCTCCATTCGGATAAACGCCACATAGGTGTGGCCCTCCGTGTCTaGCAGGAAGGAGTCTTCACAAGGGTCCTTGCTGTGGTCCAAAAC +
Preference number: 5 (lower is better)
Translates to: CLHSDKRHIGVALRV*QEGVFTRVLAVVQN
Trigger: GTTTTGGACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCAGACACGGAGGGCCACACCTATGTGGCGTTTATCCGAATGGAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAATCAGGGCCCGCTGGTTaGTCAGTTTATACTTCCAGG +
Preference number: 5 (lower is better)
Translates to: VSLSAHGPHMGLSISWAQSGPAG*SVYTSR
Trigger: CCTGGAAGTATAAACTGACAAACCAGCGGGCCCTGA...TTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGGTCTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTCAGGGCCCGCTGGTTaGTCAGTTTATACTTCCAGG +
Preference number: 5 (lower is better)
Translates to: RSLCESVSTWTPYGPVHQSGPAG*SVYTSR
Trigger: CCTGGAAGTATAAACTGACAAACCAGCGGGCCCTGA...CTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGGATGGCCCGTGGCCTGGTaGAGGACTATGACATGGATG +
Preference number: 5 (lower is better)
Translates to: RRPGPVSKGLCVSLSAHGWPVAW*RTMTWM
Trigger: CATCCATGTCATAGTCCTCAACCAGGCCACGGGCCA...TCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAAGAACCACAGCAAACTaGGCCTCCGGAAACAGGTTG +
Preference number: 5 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTRTTAN*ASGNRL
Trigger: CAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGTCTGGTGTGGGCCACTaGGGCTCAAGCTCCTCCTTG +
Preference number: 5 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVSGVGH*GSSSSL
Trigger: CAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGA...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GAGAGGAATAAAGGCCCCGGGTTGGGCCTATTCCCAAGGCCCCCAGGACAGTCAACACCTGGAACTGTGTaGAACTTGTGCTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: ERNKGPGLGLFPRPPGQSTPGTV*NLCFLK
Trigger: CTTCAAGAAGCACAAGTTCAACACAGTTCCAGGTGT...TGACTGTCCTGGGGGCCTTGGGAATAGGCCCAACCCGGGGCCTTTATTCCTCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACATTCCCATTTGAGTCCTaGACTTCCTTGGTCCCCTCC +
Preference number: 5 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTFPFES*TSLVPS
Trigger: GGAGGGGACCAAGGAAGTCAAGGACTCAAATGGGAA...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000106494.3
CDS TCA 90 bp GCCATCAATGAAGACCGTTATCATCTGTGGAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCATCCTGTACAGGTAATTGGGCCGGTT +
Preference number: 5 (lower is better)
Translates to: AINEDRYHLWRYPLG*EQRAQHPVQVIGPV
Trigger: AACCGGCCCAATTACCTGTACAGGATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACAGATGATAACGGTCTTCATTGATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAATGGCCCGTGGCCTGGTaGAGGACTATGACATGGATG +
Preference number: 5 (lower is better)
Translates to: NKPALPLPASTKSYRVGQWPVAW*RTMTWM
Trigger: CATCCATGTCATAGTCCTCAACCAGGCCACGGGCCA...TTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGGGTACAACAGCCACAGGCACATaGAGGACCTTATTGTCTGGA +
Preference number: 5 (lower is better)
Translates to: ASTKSYRVGQRASLSGGTTATGT*RTLLSG
Trigger: TCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGT...TGTACCCCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGTATGAGCCAGTCCCACCCTCAGGGCAGCATCCTGGTCCAGAGAGGAATAAAGACAGCCACAGGCACATaGAGGACCTTATTGTCTGGA +
Preference number: 5 (lower is better)
Translates to: SMSQSHPQGSILVQRGIKTATGT*RTLLSG
Trigger: TCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGT...CTTTATTCCTCTCTGGACCAGGATGCTGCCCTGAGGGTGGGACTGGCTCATACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTCTGTGTGAGTCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGTGTCCAGGATCAACTaGATGTTGACAATGACGGTC +
Preference number: 5 (lower is better)
Translates to: LCVSLSAHGPHMGLSISWVSRIN*MLTMTV
Trigger: GACCGTCATTGTCAACATCAAGTTGATCCTGGACAC...CCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGACTCACACAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCAAGCCTTTGCTGTGTCCTaGAGGTGGAAGGAACCCTCA +
Preference number: 5 (lower is better)
Translates to: NKPALPLPASTKSYRVGQAFAVS*RWKEPS
Trigger: TGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGC...TTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGCCTTTGCTGTGTCCTaGAGGTGGAAGGAACCCTCA +
Preference number: 5 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHAFAVS*RWKEPS
Trigger: TGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGC...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTCCGGGGGCCACCATGTaGAGGAACAGCACCATGGCC +
Preference number: 5 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPPGATM*RNSTMA
Trigger: GGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGG...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTGCCTTTGCTGTGTCCTaGAGGTGGAAGGAACCCTCA +
Preference number: 5 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSAFAVS*RWKEPS
Trigger: TGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGC...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATAGAACCACAGCAAACTaGGCCTCCGGAAACAGGTTG +
Preference number: 5 (lower is better)
Translates to: KRRPGPVSKGLCVSLSAHRTTAN*ASGNRL
Trigger: CAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCT...ATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGAACCACAGCAAACTaGGCCTCCGGAAACAGGTTG +
Preference number: 5 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVRTTAN*ASGNRL
Trigger: CAACCTGTTTCCGGAGGCCAAGTTTGCTGTGGTTCT...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CTACCAGCATCTACTAAATCCTACAGGGTAGGGCAACGGGCTAGCCTGTCTGGGACACCTGGAACTGTGTaGAACTTGTGCTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: LPASTKSYRVGQRASLSGTPGTV*NLCFLK
Trigger: CTTCAAGAAGCACAAGTTCAACACAGTTCCAGGTGT...CCCAGACAGGCTAGCCCGTTGCCCTACCCTGTAGGATTTAGTAGATGCTGGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp ATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTTCAGGGCCCGCTGGTTaGTCAGTTTATACTTCCAGG +
Preference number: 5 (lower is better)
Translates to: IWTKRRLRGDLVQCLKVSSGPAG*SVYTSR
Trigger: CCTGGAAGTATAAACTGACAAACCAGCGGGCCCTGA...AGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp ATCTGGACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGGCCTCATCATAGTCTaGCTCTGGTTCTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: IWTKRRLRGDLVQCLKVSGLIIV*LWFWVF
Trigger: GAAGACCCAGAACCAGAGCAAGACTATGATGAGGCC...AGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTCCAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTGGCCTCATCATAGTCTaGCTCTGGTTCTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: KEKAKRRPGPVSKGLCVSGLIIV*LWFWVF
Trigger: GAAGACCCAGAACCAGAGCAAGACTATGATGAGGCC...ACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TCTGTCAGCACATGGACCCCATATGGGCCTGTCCATCAGTTGGGCACAACAGTTACACCTGGAACTGTGTaGAACTTGTGCTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: SVSTWTPYGPVHQLGTTVTPGTV*NLCFLK
Trigger: CTTCAAGAAGCACAAGTTCAACACAGTTCCAGGTGT...AACTGTTGTGCCCAACTGATGGACAGGCCCATATGGGGTCCATGTGCTGACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGGGCTCCTTCTTCCTTaGGGGGTGGCTCCAGGAAAA +
Preference number: 5 (lower is better)
Translates to: VKNKPALPLPASTKSYRVGLLLP*GVAPGK
Trigger: TTTTCCTGGAGCCACCCCCAAAGGAAGAAGGAGCCC...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS GCA 90 bp ATCATAGTCTTGCTCTGGTTCTGGGTCTTCATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGATCAACTTGATGTTGACAATGACGGT +
Preference number: 5 (lower is better)
Translates to: IIVLLWFWVFIGLAD*SPSVQDQLDVDNDG
Trigger: ACCGTCATTGTCAACATCAAGTTGATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAGACCCAGAACCAGAGCAAGACTATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GACAAAGAGAAGGCTAAGAGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGGTGTCCAGGATCAACTaGATGTTGACAATGACGGTC +
Preference number: 5 (lower is better)
Translates to: DKEKAKRRPGPVSKGLCVVSRIN*MLTMTV
Trigger: GACCGTCATTGTCAACATCAAGTTGATCCTGGACAC...CACACAGAGACCTTTAGACACTGGACCAGGTCTCCTCTTAGCCTTCTCTTTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AGGAGACCTGGTCCAGTGTCTAAAGGTCTCTGTGTGAGTCTGTCAGCACATGGAACACCTGGAACTGTGTaGAACTTGTGCTTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: RRPGPVSKGLCVSLSAHGTPGTV*NLCFLK
Trigger: CTTCAAGAAGCACAAGTTCAACACAGTTCCAGGTGT...TCCATGTGCTGACAGACTCACACAGAGACCTTTAGACACTGGACCAGGTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTATCAGGGCCCGCTGGTTaGTCAGTTTATACTTCCAGG +
Preference number: 5 (lower is better)
Translates to: VKNKPALPLPASTKSYRVSGPAG*SVYTSR
Trigger: CCTGGAAGTATAAACTGACAAACCAGCGGGCCCTGA...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp CCCAAAGAGGTCCTGGGAACTCTCCTGCTCTTCTTTGACAAGGAAGTAAATAAATCTTCACAAGGGTCCTaGCTGTGGTCCAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: PKEVLGTLLLFFDKEVNKSSQGS*LWSKTS
Trigger: CGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGA...TTTATTTACTTCCTTGTCAAAGAAGAGCAGGAGAGTTCCCAGGACCTCTTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACGGCCTCATCATAGTCTaGCTCTGGTTCTGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: FHVKNKPALPLPASTKSYGLIIV*LWFWVF
Trigger: GAAGACCCAGAACCAGAGCAAGACTATGATGAGGCC...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACTCTTCACAAGGGTCCTaGCTGTGGTCCAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: FHVKNKPALPLPASTKSYSSQGS*LWSKTS
Trigger: CGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGA...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp GTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACAGGGTAGTGTCCAGGATCAACTaGATGTTGACAATGACGGTC +
Preference number: 5 (lower is better)
Translates to: VKNKPALPLPASTKSYRVVSRIN*MLTMTV
Trigger: GACCGTCATTGTCAACATCAAGTTGATCCTGGACAC...TACCCTGTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp TTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTACACAGCCACAGGCACATaGAGGACCTTATTGTCTGGA +
Preference number: 5 (lower is better)
Translates to: FHVKNKPALPLPASTKSYTATGT*RTLLSG
Trigger: TCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGT...GTAGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS-3UTR CAA 90 bp AATTCCATGTTAAAAACAAACCAGCCCTACCCCTACCAGCATCTACTAAATCCTTCTTCACAAGGGTCCTaGCTGTGGTCCAAAACCTCG +
Preference number: 5 (lower is better)
Translates to: NSMLKTNQPYPYQHLLNPSSQGS*LWSKTS
Trigger: CGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGA...AGGATTTAGTAGATGCTGGTAGGGGTAGGGCTGGTTTGTTTTTAACATGGAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000121052.8
CDS GCA 72 bp CCTTGCAGCTGCACACGCTCCCGTAGCCCTCCACTTTaGTGCAGAAGCGCCTGCGGCGGCGGTTCAACTCCG +
Preference number: 6 (lower is better)
Translates to: PCSCTRSRSPPL*CRSACGGGSTP
Trigger: CGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCGTGTGCAGCTGCAAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp CGCTCCCGTAGCCCTCCACTTTGCTGCAGAAGCGCCTaGGGCGGCGGTTCAACTCCGTATCTGCCCAGTGAC +
Preference number: 6 (lower is better)
Translates to: RSRSPPLCCRSA*GGGSTPYLPSD
Trigger: GTCACTGGGCAGATACGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp CCGTGCAGATCAGCACGCGGCCGGGGGCCACCATGTTaGGGAACAGCACCATGGCCTCATCCTCATGAGGAG +
Preference number: 6 (lower is better)
Translates to: PCRSARGRGPPC*GTAPWPHPHEE
Trigger: CTCCTCATGAGGATGAGGCCATGGTGCTGTTCCTCAACATGGTGGCCCCCGGCCGCGTGCTGATCTGCACGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp CGCCTGCGGCGGCGGTTCAACTCCGTATCTGCCCAGTaGCACTCAGCCTCTCCTTTTCGTCCCACGAAGGCC +
Preference number: 6 (lower is better)
Translates to: RLRRRFNSVSAQ*HSASPFRPTKA
Trigger: GGCCTTCGTGGGACGAAAAGGAGAGGCTGAGTGTCACTGGGCAGATACGGAGTTGAACCGCCGCCGCAGGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106496.8
CDS GCA 72 bp GCCTGGTTGAGGACTATGACATGGATGCCTCGGCCCTaGTCCCGGGCTTCATCCTCGAGCACCGTGGTGCCA +
Preference number: 6 (lower is better)
Translates to: AWLRTMTWMPRP*SRASSSSTVVP
Trigger: TGGCACCACGGTGCTCGAGGATGAAGCCCGGGAGCAGGGCCGAGGCATCCATGTCATAGTCCTCAACCAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp TGCAGCTGCACACGCTCCCGTAGCCCTCCACTTTGCTaGAGAAGCGCCTGCGGCGGCGGTTCAACTCCGTAT +
Preference number: 6 (lower is better)
Translates to: CSCTRSRSPPLC*RSACGGGSTPY
Trigger: ATACGGAGTTGAACCGCCGCCGCAGGCGCTTCTGCAGCAAAGTGGAGGGCTACGGGAGCGTGTGCAGCTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp TGGAGTATACTTCCACATCCAGCACCCGTCGGGGACTaGTGCCTCTGCGCCGAGGGGACTCCAGACGTCCTA +
Preference number: 6 (lower is better)
Translates to: WSILPHPAPVGD*CLCAEGTPDVL
Trigger: TAGGACGTCTGGAGTCCCCTCGGCGCAGAGGCAGCAGTCCCCGACGGGTGCTGGATGTGGAAGTATACTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp CGATGCCAAAGTGGTAGGATCGGGAAACATCCGGGATaGTACACTCTCGGCCCCGGCGCTGTTCCGGCATCC +
Preference number: 6 (lower is better)
Translates to: RCQSGRIGKHPG*YTLGPGAVPAS
Trigger: GGATGCCGGAACAGCGCCGGGGCCGAGAGTGTATCATCCCGGATGTTTCCCGATCCTACCACTTTGGCATCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp GCCTGCCTGACTTCCCAGGCTCCTCAGCAGAGCCTTTaGTGTGTCCTTGAGGTGGAAGGAACCCTCATCCTT +
Preference number: 6 (lower is better)
Translates to: ACLTSQAPQQSL*CVLEVEGTLIL
Trigger: AAGGATGAGGGTTCCTTCCACCTCAAGGACACAGCAAAGGCTCTGCTGAGGAGCCTGGGAAGTCAGGCAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 72 bp TTGGGCCGGTTCCCTGCAATGACAGCCACAGGCACATaGAGGACCTTATTGTCTGGAAGTGGGTCAGGGCTG +
Preference number: 6 (lower is better)
Translates to: LGRFPAMTATGT*RTLLSGSGSGL
Trigger: CAGCCCTGACCCACTTCCAGACAATAAGGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 72 bp TCCGTGTCTGGCAGGAAGGAGTCTTCACAAGGGTCCTaGCTGTGGTCCAAAACCTCGGCCTCACTGAGCAGT +
Preference number: 6 (lower is better)
Translates to: SVSGRKESSQGS*LWSKTSASLSS
Trigger: ACTGCTCAGTGAGGCCGAGGTTTTGGACCACAGCAAGGACCCTTGTGAAGACTCCTTCCTGCCAGACACGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 90 bp GCTTCATCCTCGAGCACCGTGGTGCCATCCACAGCCACATACACTTaGCTTCTACTGGAGTATACTTCCACATCCAGCACCCGTCGGGGA +
Preference number: 6 (lower is better)
Translates to: ASSSSTVVPSTATYT*LLLEYTSTSSTRRG
Trigger: TCCCCGACGGGTGCTGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGTATGTGGCTGTGGATGGCACCACGGTGCTCGAGGATGAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CCA 72 bp GACACACGGGCGTTCTTGATGCTGATAGGAGTATGCTaGATGCCTCTCAGACCAAACAGCGCCACCACATCC +
Preference number: 6 (lower is better)
Translates to: DTRAFLMLIGVC*MPLRPNSATTS
Trigger: GGATGTGGTGGCGCTGTTTGGTCTGAGAGGCATCCAGCATACTCCTATCAGCATCAAGAACGCCCGTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 90 bp TCCCACAGCTTTTCTGGTGTGGGCCACTTGGGCTCAAGCTCCTCCTaGTATAAAGATTTCCTGAGCACCCATCCTAGCCCAGGCATGGTC +
Preference number: 6 (lower is better)
Translates to: SHSFSGVGHLGSSSS*YKDFLSTHPSPGMV
Trigger: GACCATGCCTGGGCTAGGATGGGTGCTCAGGAAATCTTTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp CGAGCACCGTGGTGCCATCCACAGCCACATACACTTTaGTTCTACTGGAGTATACTTCCACATCCAGCACCC +
Preference number: 6 (lower is better)
Translates to: RAPWCHPQPHTL*FYWSILPHPAP
Trigger: GGGTGCTGGATGTGGAAGTATACTCCAGTAGAAGCAAAGTGTATGTGGCTGTGGATGGCACCACGGTGCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp ATCCTCATGAGGAGAGTATGTGTCAAACACGCGCTTTaGCATCACGTGGCCCGTGGCCTGGTTGAGGACTAT +
Preference number: 6 (lower is better)
Translates to: ILMRRVCVKHAL*HHVARGLVEDY
Trigger: ATAGTCCTCAACCAGGCCACGGGCCACGTGATGGCAAAGCGCGTGTTTGACACATACTCTCCTCATGAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp GCGCAGCATCCTGTACAGGTAATTGGGCCGGTTCCCTaGAATGACAGCCACAGGCACATTGAGGACCTTATT +
Preference number: 6 (lower is better)
Translates to: AQHPVQVIGPVP*NDSHRHIEDLI
Trigger: AATAAGGTCCTCAATGTGCCTGTGGCTGTCATTGCAGGGAACCGGCCCAATTACCTGTACAGGATGCTGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp ACTTGGGCTCAAGCTCCTCCTTGTATAAAGATTTCCTaGGCACCCATCCTAGCCCAGGCATGGTCTCCACAC +
Preference number: 6 (lower is better)
Translates to: TWAQAPPCIKIS*APILAQAWSPH
Trigger: GTGTGGAGACCATGCCTGGGCTAGGATGGGTGCTCAGGAAATCTTTATACAAGGAGGAGCTTGAGCCCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp TCTTCTTCCGAAATAATCTCCACAGGCCCCGGTGGTTaGCACGAACATCCAGGTCCCAAATATGGAGGCACT +
Preference number: 6 (lower is better)
Translates to: SSSEIISTGPGG*HEHPGPKYGGT
Trigger: AGTGCCTCCATATTTGGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGAAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CCA 72 bp TCAATGAAGACCGTTATCATCTGTGGAGATACCCCTTaGGCTGAGAGCAGAGAGCGCAGCATCCTGTACAGG +
Preference number: 6 (lower is better)
Translates to: SMKTVIICGDTP*AESRERSILYR
Trigger: CCTGTACAGGATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACAGATGATAACGGTCTTCATTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CCA 72 bp TGGTTCTTCTTCCGAAATAATCTCCACAGGCCCCGGTaGTTGCCACGAACATCCAGGTCCCAAATATGGAGG +
Preference number: 6 (lower is better)
Translates to: WFFFRNNLHRPR*LPRTSRSQIWR
Trigger: CCTCCATATTTGGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGAAGAAGAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 72 bp TTCTTCTTCCGAAATAATCTCCACAGGCCCCGGTGGTaGCCACGAACATCCAGGTCCCAAATATGGAGGCAC +
Preference number: 6 (lower is better)
Translates to: FFFRNNLHRPRW*PRTSRSQIWRH
Trigger: GTGCCTCCATATTTGGGACCTGGATGTTCGTGGCAACCACCGGGGCCTGTGGAGATTATTTCGGAAGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp ACCATGTTGAGGAACAGCACCATGGCCTCATCCTCATaGGGAGAGTATGTGTCAAACACGCGCTTTGCCATC +
Preference number: 6 (lower is better)
Translates to: TMLRNSTMASSS*GEYVSNTRFAI
Trigger: GATGGCAAAGCGCGTGTTTGACACATACTCTCCTCATGAGGATGAGGCCATGGTGCTGTTCCTCAACATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp GAAGACCGTTATCATCTGTGGAGATACCCCTTGGGCTaGGAGCAGAGAGCGCAGCATCCTGTACAGGTAATT +
Preference number: 6 (lower is better)
Translates to: EDRYHLWRYPLG*EQRAQHPVQVI
Trigger: AATTACCTGTACAGGATGCTGCGCTCTCTGCTCTCAGCCCAAGGGGTATCTCCACAGATGATAACGGTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS GCA 72 bp TTGCTCTGGTTCTGGGTCTTCATTGGCCTCGCTGATTaGTCTCCGAGTGTCCAGGATCAACTTGATGTTGAC +
Preference number: 6 (lower is better)
Translates to: LLWFWVFIGLAD*SPSVQDQLDVD
Trigger: GTCAACATCAAGTTGATCCTGGACACTCGGAGAGCAATCAGCGAGGCCAATGAAGACCCAGAACCAGAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 72 bp TTTTCTGGTGTGGGCCACTTGGGCTCAAGCTCCTCCTaGTATAAAGATTTCCTGAGCACCCATCCTAGCCCA +
Preference number: 6 (lower is better)
Translates to: FSGVGHLGSSSS*YKDFLSTHPSP
Trigger: TGGGCTAGGATGGGTGCTCAGGAAATCTTTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS TCA 72 bp CCACCACATCCATTGGCTCCTCATAGTAGCCATCAATaGAGACCGTTATCATCTGTGGAGATACCCCTTGGG +
Preference number: 6 (lower is better)
Translates to: PPHPLAPHSSHQ*RPLSSVEIPLG
Trigger: CCCAAGGGGTATCTCCACAGATGATAACGGTCTTCATTGATGGCTACTATGAGGAGCCAATGGATGTGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8
CDS CAA 72 bp ATGTCCCAATCCCACAGCTTTTCTGGTGTGGGCCACTaGGGCTCAAGCTCCTCCTTGTATAAAGATTTCCTG +
Preference number: 6 (lower is better)
Translates to: MSQSHSFSGVGH*GSSSSLYKDFL
Trigger: CAGGAAATCTTTATACAAGGAGGAGCTTGAGCCCAAGTGGCCCACACCAGAAAAGCTGTGGGATTGGGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000106494.3
ENSMUST00000106496.8
ENSMUST00000106498.8
ENSMUST00000120083.8
ENSMUST00000121052.8