RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POM121L2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000016982

Ensembl transcript IDs: ENSMUST00000017126.6, ENSMUST00000117882.2

Found 108 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTACTGCCCTTCCTGCACTaGAGGAGGGCCCTCAGCACC +
Preference number: 4 (lower is better)
Translates to: SSRDSKKWSLLRSQILVVLPFLH*RRALST
Trigger: GGTGCTGAGGGCCCTCCTCCAGTGCAGGAAGGGCAG...TACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR GCA 90 bp TCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATTATGGCTCTGCCCTTCCTaGACTGGAGGAGGGCCCTCA +
Preference number: 4 (lower is better)
Translates to: SRDSKKWSLLRSQILVVLWLCPS*TGGGPS
Trigger: TGAGGGCCCTCCTCCAGTGCAGGAAGGGCAGAGCCA...TAATACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp TCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATCTGTGGCCTCTTCATaGGGAAGCGCCTCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: SSRDSKKWSLLRSQILVVSVASS*GSASRP
Trigger: AGGCCTGGAGGCGCTTCCCCATGAAGAGGCCACAGA...TACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp GGCTCTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCGTGGCTCTTCCCACCTaGCTCTGCCCTTCCTGCACT +
Preference number: 4 (lower is better)
Translates to: GSFYSSSRDSKKWSLLRSVALPT*LCPSCT
Trigger: AGTGCAGGAAGGGCAGAGCCAGGTGGGAAGAGCCAC...GGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAGAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp CTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAAGGTGTCCGGGAACAGTaGCTCTTCCCACCTGGCTCT +
Preference number: 4 (lower is better)
Translates to: LFIHHPGIPKSGLCSAPKGVREQ*LFPPGS
Trigger: AGAGCCAGGTGGGAAGAGCCACTGTTCCCGGACACC...TTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp TCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATCCAGCCCTCATCTCTaGAATGGAGTCTCCGGCTGT +
Preference number: 4 (lower is better)
Translates to: SSRDSKKWSLLRSQILVVSSPHL*NGVSGC
Trigger: ACAGCCGGAGACTCCATTCCAGAGATGAGGGCTGGA...TACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp CAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATTAGATTGGGTCCTCTTCAGTaGCAACAGGACCTTGCTGGC +
Preference number: 4 (lower is better)
Translates to: QGFQKVVSAPLPNSGSIRLGPLQ*QQDLAG
Trigger: GCCAGCAAGGTCCTGTTGTCACTGAAGAGGACCCAA...TCTAATACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp TTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGCCAGGTGGAATCAGTaGCTGGTGTTGTGGGAGAGC +
Preference number: 4 (lower is better)
Translates to: LFIIQGFQKVVSAPLPNSARWNQ*LVLWES
Trigger: GCTCTCCCACAACACCAGTCACTGATTCCACCTGGC...AGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp TCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATTATCAGAGACCCAGGCCTaGCCACAAACGAAACAGTGG +
Preference number: 4 (lower is better)
Translates to: SRDSKKWSLLRSQILVVLSETQA*PQTKQW
Trigger: CCACTGTTTCGTTTGTGGCCAGGCCTGGGTCTCTGA...TAATACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp GGCTCTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCGGTGTGACTGAGAGGTaGGAATTAGGACTCTCTCCT +
Preference number: 4 (lower is better)
Translates to: GSFYSSSRDSKKWSLLRSGVTER*ELGLSP
Trigger: AGGAGAGAGTCCTAATTCTCACCTCTCAGTCACACC...GGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAGAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp CTCTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAGGTGGAATCAGTGACTaGTGTTGTGGGAGAGCTTGG +
Preference number: 4 (lower is better)
Translates to: LFLFIIQGFQKVVSAPLPGGISD*CCGRAW
Trigger: CCAAGCTCTCCCACAACACCAGTCACTGATTCCACC...TGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp GGCTCTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCTCAAGACATCTTTCTTaGCCTCTGAGGTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: GSFYSSSRDSKKWSLLRSSRHLS*PLRSSS
Trigger: GGAGCTGGACCTCAGAGGCCAAGAAAGATGTCTTGA...GGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAGAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp AAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATTAGACTTGTCCACCTATAGAGACAAGGTAGGCTaGATTCCAGCCCTCATCTCT +
Preference number: 4 (lower is better)
Translates to: KWSLLRSQILVVLDLSTYRDKVG*IPALIS
Trigger: AGAGATGAGGGCTGGAATTCAGCCTACCTTGTCTCT...ATAGGTGGACAAGTCTAATACTACCAGAATTTGGGAGCGGAGCAGAGACCACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp TCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATCTCTTCCAAGATCCTaGGAGCTCTCTAGAAGAACT +
Preference number: 4 (lower is better)
Translates to: SSRDSKKWSLLRSQILVVSLPRS*ELSRRT
Trigger: AGTTCTTCTAGAGAGCTCTCAGGATCTTGGAAGAGA...TACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp TTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATATCTTTCTTGGCCTCTaGGGTCCAGCTCCATCTTCC +
Preference number: 4 (lower is better)
Translates to: FLFIIQGFQKVVSAPLPNIFLGL*GPAPSS
Trigger: GGAAGATGGAGCTGGACCTCAGAGGCCAAGAAAGAT...ATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp CCAAATTCTGGTAGTATTAGACTTGTCCACCTATTCAAGATAACACATGAAAGGAAGGAAGAGAGCCCATaGTGGGGTTCTGTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: PNSGSIRLVHLFKITHERKEESP*WGSVAS
Trigger: AGAGGCCACAGAACCCCATCATGGGCTCTCTTCCTT...CCTTTCATGTGTTATCTTGAATAGGTGGACAAGTCTAATACTACCAGAATTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR TCA 90 bp AAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATTAGACTTGTCCACCTATTCTGGACTAATGTCCTaGGAAAATGTCTCTTCCAAG +
Preference number: 4 (lower is better)
Translates to: KWSLLRSQILVVLDLSTYSGLMS*ENVSSK
Trigger: CTTGGAAGAGACATTTTCTCAGGACATTAGTCCAGA...ATAGGTGGACAAGTCTAATACTACCAGAATTTGGGAGCGGAGCAGAGACCACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp CTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTATCATCTGAGCTCTaGACATGGGGTCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: LFIHHPGIPKSGLCSAPKLSSEL*TWGLLF
Trigger: GAAAAGGAGACCCCATGTCCAGAGCTCAGATGATAA...TTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp TTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTTCTGAAGAGATGCCTTaGATGTGCTCTAACTGTGAG +
Preference number: 4 (lower is better)
Translates to: LFIIQGFQKVVSAPLPNSSEEMP*MCSNCE
Trigger: CTCACAGTTAGAGCACATCCAAGGCATCTCTTCAGA...AGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS-3UTR CCA 90 bp CTCCCAAATTCTGGTAGTATTAGACTTGTCCACCTATTCAAGATAACACATGAATTGGAGACGCCTGGGTaGAAGCAATTGAGGGATTTG +
Preference number: 4 (lower is better)
Translates to: LPNSGSIRLVHLFKITHELETPG*KQLRDL
Trigger: CAAATCCCTCAATTGCTTCCACCCAGGCGTCTCCAA...TTCATGTGTTATCTTGAATAGGTGGACAAGTCTAATACTACCAGAATTTGGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS GCA 90 bp GGCTGTCGGAGGTGTCCGGGAACAGTGGCTCTTCCCACCTGGCTCTaGCCTTCCTGCACTGGAGGAGGGCCCTCAGCACCGGGTCCTTTC +
Preference number: 5 (lower is better)
Translates to: GCRRCPGTVALPTWL*PSCTGGGPSAPGPF
Trigger: GAAAGGACCCGGTGCTGAGGGCCCTCCTCCAGTGCAGGAAGGGCAGAGCCAGGTGGGAAGAGCCACTGTTCCCGGACACCTCCGACAGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CCA 90 bp TCCGGGAACAGTGGCTCTTCCCACCTGGCTCTGCCCTTCCTGCACTaGAGGAGGGCCCTCAGCACCGGGTCCTTTCCACAGGGCCCTGGT +
Preference number: 5 (lower is better)
Translates to: SGNSGSSHLALPFLH*RRALSTGSFPQGPG
Trigger: ACCAGGGCCCTGTGGAAAGGACCCGGTGCTGAGGGCCCTCCTCCAGTGCAGGAAGGGCAGAGCCAGGTGGGAAGAGCCACTGTTCCCGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS-3UTR CAA 90 bp GATTCCAAAAAGTGGTCTCTGCTCCGCTCCCAAATTCTGGTAGTATTAGACTTGTTGGCGGGATCCCAGTaGGGCGGCCTCCGGGCCGGC +
Preference number: 5 (lower is better)
Translates to: DSKKWSLLRSQILVVLDLLAGSQ*GGLRAG
Trigger: GCCGGCCCGGAGGCCGCCCAACTGGGATCCCGCCAA...CAAGTCTAATACTACCAGAATTTGGGAGCGGAGCAGAGACCACTTTTTGGAATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS TCA 90 bp TACGCTTCAGGTAACTTTCCCACCAGTCTGAAGGAAGAGAGCCCATaGTGGGGTTCTGTGGCCTCTTCATGGGGAAGCGCCTCCAGGCCT +
Preference number: 5 (lower is better)
Translates to: YASGNFPTSLKEESP*WGSVASSWGSASRP
Trigger: AGGCCTGGAGGCGCTTCCCCATGAAGAGGCCACAGAACCCCATCATGGGCTCTCTTCCTTCAGACTGGTGGGAAAGTTACCTGAAGCGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 90 bp CAGACCTGTGAGCCCGAGGGATTGAAGATAGCCAGGTGGAATCAGTaGCTGGTGTTGTGGGAGAGCTTGGAGACGCCTGGGTGGAAGCAA +
Preference number: 5 (lower is better)
Translates to: QTCEPEGLKIARWNQ*LVLWESLETPGWKQ
Trigger: TTGCTTCCACCCAGGCGTCTCCAAGCTCTCCCACAACACCAGTCACTGATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACAGGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 90 bp GCTGTGGGGTTAATGACAGATGAGTGTGGGGGCACAGCAGACCTGTaGGCCCGAGGGATTGAAGATAGCCAGGTGGAATCAGTGACTGGT +
Preference number: 5 (lower is better)
Translates to: AVGLMTDECGGTADL*ARGIEDSQVESVTG
Trigger: ACCAGTCACTGATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACAGGTCTGCTGTGCCCCCACACTCATCTGTCATTAACCCCACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 90 bp TTTCCCTGTGAGCCCGAGGGATTGAAGATAGCCAGGTGGAATCAGTaGCTGGTGTTGTGGGAGAGCTTGGAGACGCCTGGGTGGAAGCAA +
Preference number: 5 (lower is better)
Translates to: FPCEPEGLKIARWNQ*LVLWESLETPGWKQ
Trigger: TTGCTTCCACCCAGGCGTCTCCAAGCTCTCCCACAACACCAGTCACTGATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACAGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS GCA 90 bp GAGACGCCTGGGTGGAAGCAATTGAGGGATTTGAGTCTGAAGAGATaGCTTGGATGTGCTCTAACTGTGAGCACCCGAGTGGGGCAGGCA +
Preference number: 5 (lower is better)
Translates to: ETPGWKQLRDLSLKR*LGCALTVSTRVGQA
Trigger: TGCCTGCCCCACTCGGGTGCTCACAGTTAGAGCACATCCAAGGCATCTCTTCAGACTCAAATCCCTCAATTGCTTCCACCCAGGCGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 90 bp CAGTGGCCGAGGGAAAGTTCTGGGAAGCTCCAAGCAGGAAAGTGCTaGAAGAAGGGACAGAGCAAGAGTTGCCTGTGGTGCTGGTCACTA +
Preference number: 5 (lower is better)
Translates to: QWPRESSGKLQAGKC*KKGQSKSCLWCWSL
Trigger: TAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTGGAGCTTCCCAGAACTTTCCCTCGGCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp GACGTAACCACACAGGGGGCTGTGGTGGCTAGGCTGTGGAAAAGATaGGTAGAATCAGAACTCAGTGAAGAAGAGGGCTGCCTGGTGTGC +
Preference number: 5 (lower is better)
Translates to: DVTTQGAVVARLWKR*VESELSEEEGCLVC
Trigger: GCACACCAGGCAGCCCTCTTCTTCACTGAGTTCTGATTCTACCCATCTTTTCCACAGCCTAGCCACCACAGCCCCCTGTGTGGTTACGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 90 bp GCCTCTGAGGTCCAGCTCCATCTTCCAGACAGACACTTTTCCCTGTaGGCCCGAGGGATTGAAGATAGCCAGGTGGAATCAGTGACTGGT +
Preference number: 5 (lower is better)
Translates to: ASEVQLHLPDRHFSL*ARGIEDSQVESVTG
Trigger: ACCAGTCACTGATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACAGGGAAAAGTGTCTGTCTGGAAGATGGAGCTGGACCTCAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS GCA 90 bp AATCAGTGGCCGAGGGAAAGTTCTGGGAAGCTCCAAGCAGGAAAGTaGTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTGGTGCTGGTCA +
Preference number: 5 (lower is better)
Translates to: NQWPRESSGKLQAGK*CKKGQSKSCLWCWS
Trigger: TGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTGGAGCTTCCCAGAACTTTCCCTCGGCCACTGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 90 bp GGCCCTGCATACTCTGGTTCCAGCATTGCACAAAGGGAGCTAGGGTaGTTGGGGTCATACTCTGTCTTGTGCCAGAAGTGCTCCTTTTGG +
Preference number: 5 (lower is better)
Translates to: GPAYSGSSIAQRELG*LGSYSVLCQKCSFW
Trigger: CCAAAAGGAGCACTTCTGGCACAAGACAGAGTATGACCCCAAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGAGTATGCAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 90 bp CTTGCAGGAATGCCAGCCAAAGGTGTGATCTGGTTAGGAGGGCCCTaGATACTCTGGTTCCAGCATTGCACAAAGGGAGCTAGGGTGCTT +
Preference number: 5 (lower is better)
Translates to: LAGMPAKGVIWLGGP*ILWFQHCTKGARVL
Trigger: AAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGAGTATGCAGGGCCCTCCTAACCAGATCACACCTTTGGCTGGCATTCCTGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp ATGCCAGCCAAAGGTGTGATCTGGTTAGGAGGGCCCTGCATACTCTaGTTCCAGCATTGCACAAAGGGAGCTAGGGTGCTTGGGGTCATA +
Preference number: 5 (lower is better)
Translates to: MPAKGVIWLGGPCIL*FQHCTKGARVLGVI
Trigger: TATGACCCCAAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGAGTATGCAGGGCCCTCCTAACCAGATCACACCTTTGGCTGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp CAGGTGGAATCAGTGACTGGTGTTGTGGGAGAGCTTGGAGACGCCTaGGTGGAAGCAATTGAGGGATTTGAGTCTGAAGAGATGCCTTGG +
Preference number: 5 (lower is better)
Translates to: QVESVTGVVGELGDA*VEAIEGFESEEMPW
Trigger: CCAAGGCATCTCTTCAGACTCAAATCCCTCAATTGCTTCCACCCAGGCGTCTCCAAGCTCTCCCACAACACCAGTCACTGATTCCACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CCA 90 bp GTGAGTGCTGAAGTCACATTGGAGTTGCTTGAGGTCACTGGAGGCTaGTTTGTGGACGATAAGCCCAAAGTTGCCAGAGGGTTGCTCACC +
Preference number: 5 (lower is better)
Translates to: VSAEVTLELLEVTGG*FVDDKPKVARGLLT
Trigger: GGTGAGCAACCCTCTGGCAACTTTGGGCTTATCGTCCACAAACCAGCCTCCAGTGACCTCAAGCAACTCCAATGTGACTTCAGCACTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS-3UTR CAA 90 bp GGCTCTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCGGAGTTCACCACTCTaGAGACCGGGAACAAGGGCC +
Preference number: 5 (lower is better)
Translates to: GSFYSSSRDSKKWSLLRSRSSPL*RPGTRA
Trigger: GGCCCTTGTTCCCGGTCTCAAGAGTGGTGAACTCCG...GGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAGAGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS TCA 90 bp GAAGAGGGCTGCCTGGTGTGCACAGGAGCTGTCTCAGACATAGTTTaGAGCGGTTCTATACTGCCAAAGATAGGCTTGAAGGTGGGCCTT +
Preference number: 5 (lower is better)
Translates to: EEGCLVCTGAVSDIV*SGSILPKIGLKVGL
Trigger: AAGGCCCACCTTCAAGCCTATCTTTGGCAGTATAGAACCGCTTCAAACTATGTCTGAGACAGCTCCTGTGCACACCAGGCAGCCCTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 90 bp GGGATGGTGGCAAAAGTGGCTTTGGGCTTGACCCCAAAGATGATGTaGGTGCTGAAGTCACATTGGAGTTGCTTGAGGTCACTGGAGGCT +
Preference number: 5 (lower is better)
Translates to: GMVAKVALGLTPKMM*VLKSHWSCLRSLEA
Trigger: AGCCTCCAGTGACCTCAAGCAACTCCAATGTGACTTCAGCACTCACATCATCTTTGGGGTCAAGCCCAAAGCCACTTTTGCCACCATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp AGAAGACGTCTCCACGGGAAGTACAGATGCAGGAAGATGGAGAATTaGGTTACTCACCACCCCAACCAAAGTGCTTTGTGTGGTGGGTGC +
Preference number: 5 (lower is better)
Translates to: RRRLHGKYRCRKMEN*VTHHPNQSALCGGC
Trigger: GCACCCACCACACAAAGCACTTTGGTTGGGGTGGTGAGTAACCCAATTCTCCATCTTCCTGCATCTGTACTTCCCGTGGAGACGTCTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 90 bp ACGAAGGGACCAAATATTACGCTTCAGGTAACTTTCCCACCAGTCTaGAGGAAGAGAGCCCATGATGGGGTTCTGTGGCCTCTTCATGGG +
Preference number: 5 (lower is better)
Translates to: TKGPNITLQVTFPPV*RKRAHDGVLWPLHG
Trigger: CCCATGAAGAGGCCACAGAACCCCATCATGGGCTCTCTTCCTTCAGACTGGTGGGAAAGTTACCTGAAGCGTAATATTTGGTCCCTTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 90 bp GCAGGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTGGTaGTGGTCACTATGTTCAAATCCACACCAGGGTCTTTGGATTTGC +
Preference number: 5 (lower is better)
Translates to: AGKCCKKGQSKSCLW*WSLCSNPHQGLWIC
Trigger: GCAAATCCAAAGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 90 bp AAGCTCCAAGCAGGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTTaGCTGTGGTGCTGGTCACTATGTTCAAATCCACACCAGGGTCTT +
Preference number: 5 (lower is better)
Translates to: KLQAGKCCKKGQSKS*LWCWSLCSNPHQGL
Trigger: AAGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTGGAGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp GGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTGGTGCTaGTCACTATGTTCAAATCCACACCAGGGTCTTTGGATTTGCTGG +
Preference number: 5 (lower is better)
Translates to: GKCCKKGQSKSCLWC*SLCSNPHQGLWICW
Trigger: CCAGCAAATCCAAAGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp GGGTGTTGGGAAGGGAAAATTAAATCAGTGGCCGAGGGAAAGTTCTaGGAAGCTCCAAGCAGGAAAGTGCTGCAAGAAGGGACAGAGCAA +
Preference number: 5 (lower is better)
Translates to: GCWEGKIKSVAEGKF*EAPSRKVLQEGTEQ
Trigger: TTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTGGAGCTTCCCAGAACTTTCCCTCGGCCACTGATTTAATTTTCCCTTCCCAACACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 90 bp ATGGGGTTGGAGACACACCTGAGTTCTCTGAAAGGAAAGAGGTACTaGAGCTTTGGGCAGGAGCTAGCTGGAGAGAAGATTGCTTTAGCC +
Preference number: 5 (lower is better)
Translates to: MGLETHLSSLKGKRY*SFGQELAGEKIALA
Trigger: GGCTAAAGCAATCTTCTCTCCAGCTAGCTCCTGCCCAAAGCTTCAGTACCTCTTTCCTTTCAGAGAACTCAGGTGTGTCTCCAACCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp CAAGCAGGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTaGTGCTGGTCACTATGTTCAAATCCACACCAGGGTCTTTGGATT +
Preference number: 5 (lower is better)
Translates to: QAGKCCKKGQSKSCL*CWSLCSNPHQGLWI
Trigger: AATCCAAAGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp GGAGACACACCTGAGTTCTCTGAAAGGAAAGAGGTACTGAAGCTTTaGGCAGGAGCTAGCTGGAGAGAAGATTGCTTTAGCCCATCTATG +
Preference number: 5 (lower is better)
Translates to: GDTPEFSERKEVLKL*AGASWREDCFSPSM
Trigger: CATAGATGGGCTAAAGCAATCTTCTCTCCAGCTAGCTCCTGCCCAAAGCTTCAGTACCTCTTTCCTTTCAGAGAACTCAGGTGTGTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS-3UTR CAA 90 bp CTCTTTTTATTCATCATCCAGGGATTCCAAAAAGTGGTCTCTGCTCCGCTCCCATGTGAGCCCGAGGGATaGAAGATAGCCAGGTGGAAT +
Preference number: 5 (lower is better)
Translates to: LFLFIIQGFQKVVSAPLPCEPEG*KIARWN
Trigger: ATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACA...TGGGAGCGGAGCAGAGACCACTTTTTGGAATCCCTGGATGATGAATAAAAAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS TCA 90 bp TGGAGAGAAGATTGCTTTAGCCCATCTATGGCCCCAGGTGAGCTTTaGGAAGTATTTCTTTGGGATGGTGGCAAAAGTGGCTTTGGGCTT +
Preference number: 5 (lower is better)
Translates to: WREDCFSPSMAPGEL*EVFLWDGGKSGFGL
Trigger: AAGCCCAAAGCCACTTTTGCCACCATCCCAAAGAAATACTTCTCAAAGCTCACCTGGGGCCATAGATGGGCTAAAGCAATCTTCTCTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp TGGCTAAAGATAGTGACCGTGTGTACAGTGGGAATTGTGGGGTGTTaGGAAGGGAAAATTAAATCAGTGGCCGAGGGAAAGTTCTGGGAA +
Preference number: 5 (lower is better)
Translates to: WLKIVTVCTVGIVGC*EGKIKSVAEGKFWE
Trigger: TTCCCAGAACTTTCCCTCGGCCACTGATTTAATTTTCCCTTCCCAACACCCCACAATTCCCACTGTACACACGGTCACTATCTTTAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 90 bp TCAGTGCTTCTAAGAGGGGATATCTTGATGGCACTAGTAAGAACCTaGCTAAAGATAGTGACCGTGTGTACAGTGGGAATTGTGGGGTGT +
Preference number: 5 (lower is better)
Translates to: SVLLRGDILMALVRT*LKIVTVCTVGIVGC
Trigger: ACACCCCACAATTCCCACTGTACACACGGTCACTATCTTTAGCCAGGTTCTTACTAGTGCCATCAAGATATCCCCTCTTAGAAGCACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp GGCGGCCTCCGGGCCGGCCTGTGTCTCCGAGCGGGCTaGGCGCGGTGGACATGCTGCACCCGGTGGACCTGG +
Preference number: 6 (lower is better)
Translates to: GGLRAGLCLRAG*ARWTCCTRWTW
Trigger: CCAGGTCCACCGGGTGCAGCATGTCCACCGCGCCCAGCCCGCTCGGAGACACAGGCCGGCCCGGAGGCCGCC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CAA 72 bp TCACTGACGAAAGCGGTAGGGTTGGCGGGATCCCAGTaGGGCGGCCTCCGGGCCGGCCTGTGTCTCCGAGCG +
Preference number: 6 (lower is better)
Translates to: SLTKAVGLAGSQ*GGLRAGLCLRA
Trigger: CGCTCGGAGACACAGGCCGGCCCGGAGGCCGCCCAACTGGGATCCCGCCAACCCTACCGCTTTCGTCAGTGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CAA 90 bp TTCATGGGGAAGCGCCTCCAGGCCTCACTGACGAAAGCGGTAGGGTaGGCGGGATCCCAGTTGGGCGGCCTCCGGGCCGGCCTGTGTCTC +
Preference number: 6 (lower is better)
Translates to: FMGKRLQASLTKAVG*AGSQLGGLRAGLCL
Trigger: GAGACACAGGCCGGCCCGGAGGCCGCCCAACTGGGATCCCGCCAACCCTACCGCTTTCGTCAGTGAGGCCTGGAGGCGCTTCCCCATGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 72 bp AGGTGTCCGGGAACAGTGGCTCTTCCCACCTGGCTCTaGCCTTCCTGCACTGGAGGAGGGCCCTCAGCACCG +
Preference number: 6 (lower is better)
Translates to: RCPGTVALPTWL*PSCTGGGPSAP
Trigger: CGGTGCTGAGGGCCCTCCTCCAGTGCAGGAAGGGCAGAGCCAGGTGGGAAGAGCCACTGTTCCCGGACACCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 72 bp GAGCCCGAGGGATTGAAGATAGCCAGGTGGAATCAGTaGCTGGTGTTGTGGGAGAGCTTGGAGACGCCTGGG +
Preference number: 6 (lower is better)
Translates to: EPEGLKIARWNQ*LVLWESLETPG
Trigger: CCCAGGCGTCTCCAAGCTCTCCCACAACACCAGTCACTGATTCCACCTGGCTATCTTCAATCCCTCGGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 72 bp GGTAACTTTCCCACCAGTCTGAAGGAAGAGAGCCCATaGTGGGGTTCTGTGGCCTCTTCATGGGGAAGCGCC +
Preference number: 6 (lower is better)
Translates to: GNFPTSLKEESP*WGSVASSWGSA
Trigger: GGCGCTTCCCCATGAAGAGGCCACAGAACCCCATCATGGGCTCTCTTCCTTCAGACTGGTGGGAAAGTTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 72 bp CCGAGGGAAAGTTCTGGGAAGCTCCAAGCAGGAAAGTaGTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: PRESSGKLQAGK*CKKGQSKSCLW
Trigger: CCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTGGAGCTTCCCAGAACTTTCCCTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 72 bp TGGTTAGGAGGGCCCTGCATACTCTGGTTCCAGCATTaGACAAAGGGAGCTAGGGTGCTTGGGGTCATACTC +
Preference number: 6 (lower is better)
Translates to: WLGGPCILWFQH*TKGARVLGVIL
Trigger: GAGTATGACCCCAAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGAGTATGCAGGGCCCTCCTAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp GAGAGACAAGGTAGGCTGAATTCCAGCCCTCATCTCTaGAATGGAGTCTCCGGCTGTCCCGGTTGTAGCTTC +
Preference number: 6 (lower is better)
Translates to: ERQGRLNSSPHL*NGVSGCPGCSF
Trigger: GAAGCTACAACCGGGACAGCCGGAGACTCCATTCCAGAGATGAGGGCTGGAATTCAGCCTACCTTGTCTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 72 bp CTCTCAGAAGACGACCGACTGAGAGACAAGGTAGGCTaGATTCCAGCCCTCATCTCTGGAATGGAGTCTCCG +
Preference number: 6 (lower is better)
Translates to: LSEDDRLRDKVG*IPALISGMESP
Trigger: CGGAGACTCCATTCCAGAGATGAGGGCTGGAATTCAGCCTACCTTGTCTCTCAGTCGGTCGTCTTCTGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CAA 72 bp TCTGGTTCCAGCATTGCACAAAGGGAGCTAGGGTGCTaGGGGTCATACTCTGTCTTGTGCCAGAAGTGCTCC +
Preference number: 6 (lower is better)
Translates to: SGSSIAQRELGC*GSYSVLCQKCS
Trigger: GGAGCACTTCTGGCACAAGACAGAGTATGACCCCAAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 72 bp TTAATGACAGATGAGTGTGGGGGCACAGCAGACCTGTaGGCCCGAGGGATTGAAGATAGCCAGGTGGAATCA +
Preference number: 6 (lower is better)
Translates to: LMTDECGGTADL*ARGIEDSQVES
Trigger: TGATTCCACCTGGCTATCTTCAATCCCTCGGGCTCACAGGTCTGCTGTGCCCCCACACTCATCTGTCATTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 72 bp TACTCTGGTTCCAGCATTGCACAAAGGGAGCTAGGGTaGTTGGGGTCATACTCTGTCTTGTGCCAGAAGTGC +
Preference number: 6 (lower is better)
Translates to: YSGSSIAQRELG*LGSYSVLCQKC
Trigger: GCACTTCTGGCACAAGACAGAGTATGACCCCAAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 72 bp GGACATCCCAAAGCCAAGACTGCTACCTGCCTTAATTaGTCCAGGTACAGGGATACTCTGAGCAAAGGGGAC +
Preference number: 6 (lower is better)
Translates to: GHPKAKTATCLN*SRYRDTLSKGD
Trigger: GTCCCCTTTGCTCAGAGTATCCCTGTACCTGGAGCAATTAAGGCAGGTAGCAGTCTTGGCTTTGGGATGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp TCAGTGACTGGTGTTGTGGGAGAGCTTGGAGACGCCTaGGTGGAAGCAATTGAGGGATTTGAGTCTGAAGAG +
Preference number: 6 (lower is better)
Translates to: SVTGVVGELGDA*VEAIEGFESEE
Trigger: CTCTTCAGACTCAAATCCCTCAATTGCTTCCACCCAGGCGTCTCCAAGCTCTCCCACAACACCAGTCACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CCA 72 bp GTTCAAATCCACACCAGGGTCTTTGGATTTGCTGGCTaGAATGACAGACGTAACCACACAGGGGGCTGTGGT +
Preference number: 6 (lower is better)
Translates to: VQIHTRVFGFAG*NDRRNHTGGCG
Trigger: ACCACAGCCCCCTGTGTGGTTACGTCTGTCATTCCAGCCAGCAAATCCAAAGACCCTGGTGTGGATTTGAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp GAAGTCACATTGGAGTTGCTTGAGGTCACTGGAGGCTaGTTTGTGGACGATAAGCCCAAAGTTGCCAGAGGG +
Preference number: 6 (lower is better)
Translates to: EVTLELLEVTGG*FVDDKPKVARG
Trigger: CCCTCTGGCAACTTTGGGCTTATCGTCCACAAACCAGCCTCCAGTGACCTCAAGCAACTCCAATGTGACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp AAAGGTGTGATCTGGTTAGGAGGGCCCTGCATACTCTaGTTCCAGCATTGCACAAAGGGAGCTAGGGTGCTT +
Preference number: 6 (lower is better)
Translates to: KGVIWLGGPCIL*FQHCTKGARVL
Trigger: AAGCACCCTAGCTCCCTTTGTGCAATGCTGGAACCAGAGTATGCAGGGCCCTCCTAACCAGATCACACCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 90 bp TTGTGGGAGAGCTTGGAGACGCCTGGGTGGAAGCAATTGAGGGATTaGAGTCTGAAGAGATGCCTTGGATGTGCTCTAACTGTGAGCACC +
Preference number: 6 (lower is better)
Translates to: LWESLETPGWKQLRD*SLKRCLGCALTVST
Trigger: GGTGCTCACAGTTAGAGCACATCCAAGGCATCTCTTCAGACTCAAATCCCTCAATTGCTTCCACCCAGGCGTCTCCAAGCTCTCCCACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CAA 90 bp GAGAAGACGTCTCCACGGGAAGTACAGATGCAGGAAGATGGAGAATaGGGTTACTCACCACCCCAACCAAAGTGCTTTGTGTGGTGGGTG +
Preference number: 6 (lower is better)
Translates to: EKTSPREVQMQEDGE*GYSPPQPKCFVWWV
Trigger: CACCCACCACACAAAGCACTTTGGTTGGGGTGGTGAGTAACCCAATTCTCCATCTTCCTGCATCTGTACTTCCCGTGGAGACGTCTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 90 bp AGAAGAGGGCTGCCTGGTGTGCACAGGAGCTGTCTCAGACATAGTTaGAAGCGGTTCTATACTGCCAAAGATAGGCTTGAAGGTGGGCCT +
Preference number: 6 (lower is better)
Translates to: RRGLPGVHRSCLRHS*KRFYTAKDRLEGGP
Trigger: AGGCCCACCTTCAAGCCTATCTTTGGCAGTATAGAACCGCTTCAAACTATGTCTGAGACAGCTCCTGTGCACACCAGGCAGCCCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 90 bp GAAGCTCCAAGCAGGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTaGCCTGTGGTGCTGGTCACTATGTTCAAATCCACACCAGGGTCT +
Preference number: 6 (lower is better)
Translates to: EAPSRKVLQEGTEQE*PVVLVTMFKSTPGS
Trigger: AGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCTTGGAGCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 90 bp GGGCTTGACCCCAAAGATGATGTGAGTGCTGAAGTCACATTGGAGTaGCTTGAGGTCACTGGAGGCTGGTTTGTGGACGATAAGCCCAAA +
Preference number: 6 (lower is better)
Translates to: GLDPKDDVSAEVTLE*LEVTGGWFVDDKPK
Trigger: TTTGGGCTTATCGTCCACAAACCAGCCTCCAGTGACCTCAAGCAACTCCAATGTGACTTCAGCACTCACATCATCTTTGGGGTCAAGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 72 bp TGGCAAGGTATAGTTAGCAGGTCCCTAGGGCCAGACTaGAGTAGAGGAATCTCTCCATTTAGCTGTCCAGAG +
Preference number: 6 (lower is better)
Translates to: WQGIVSRSLGPD*SRGISPFSCPE
Trigger: CTCTGGACAGCTAAATGGAGAGATTCCTCTACTGCAGTCTGGCCCTAGGGACCTGCTAACTATACCTTGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 72 bp TCTAATGTTGGGTCCTCTTCAGTGACAACAGGACCTTaGTGGCAAGGTATAGTTAGCAGGTCCCTAGGGCCA +
Preference number: 6 (lower is better)
Translates to: SNVGSSSVTTGP*WQGIVSRSLGP
Trigger: TGGCCCTAGGGACCTGCTAACTATACCTTGCCAGCAAGGTCCTGTTGTCACTGAAGAGGACCCAACATTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 72 bp ATTGAGGGATTTGAGTCTGAAGAGATGCCTTGGATGTaGTCTAACTGTGAGCACCCGAGTGGGGCAGGCATA +
Preference number: 6 (lower is better)
Translates to: IEGFESEEMPWM*SNCEHPSGAGI
Trigger: TATGCCTGCCCCACTCGGGTGCTCACAGTTAGAGCACATCCAAGGCATCTCTTCAGACTCAAATCCCTCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS GCA 72 bp TGCTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTGGTaGTGGTCACTATGTTCAAATCCACACCAGGGTCTT +
Preference number: 6 (lower is better)
Translates to: CCKKGQSKSCLW*WSLCSNPHQGL
Trigger: AAGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS GCA 72 bp GCAGGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTTaGCTGTGGTGCTGGTCACTATGTTCAAATCCACAC +
Preference number: 6 (lower is better)
Translates to: AGKCCKKGQSKS*LWCWSLCSNPH
Trigger: GTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp GAAGCAATTGAGGGATTTGAGTCTGAAGAGATGCCTTaGATGTGCTCTAACTGTGAGCACCCGAGTGGGGCA +
Preference number: 6 (lower is better)
Translates to: EAIEGFESEEMP*MCSNCEHPSGA
Trigger: TGCCCCACTCGGGTGCTCACAGTTAGAGCACATCCAAGGCATCTCTTCAGACTCAAATCCCTCAATTGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CCA 72 bp GAAGACGTCTCCACGGGAAGTACAGATGCAGGAAGATaGAGAATTGGGTTACTCACCACCCCAACCAAAGTG +
Preference number: 6 (lower is better)
Translates to: EDVSTGSTDAGR*RIGLLTTPTKV
Trigger: CACTTTGGTTGGGGTGGTGAGTAACCCAATTCTCCATCTTCCTGCATCTGTACTTCCCGTGGAGACGTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp TGCAAGAAGGGACAGAGCAAGAGTTGCCTGTGGTGCTaGTCACTATGTTCAAATCCACACCAGGGTCTTTGG +
Preference number: 6 (lower is better)
Translates to: CKKGQSKSCLWC*SLCSNPHQGLW
Trigger: CCAAAGACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp AAGTGCTGCAAGAAGGGACAGAGCAAGAGTTGCCTGTaGTGCTGGTCACTATGTTCAAATCCACACCAGGGT +
Preference number: 6 (lower is better)
Translates to: KCCKKGQSKSCL*CWSLCSNPHQG
Trigger: ACCCTGGTGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp ATCTTTCTTGCAGGAATGCCAGCCAAAGGTGTGATCTaGTTAGGAGGGCCCTGCATACTCTGGTTCCAGCAT +
Preference number: 6 (lower is better)
Translates to: IFLAGMPAKGVI*LGGPCILWFQH
Trigger: ATGCTGGAACCAGAGTATGCAGGGCCCTCCTAACCAGATCACACCTTTGGCTGGCATTCCTGCAAGAAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp ATCTCAAAGGATTTCTCCCCACAGAACCCTGAACAGTaGGAGAGGACATCCCAAAGCCAAGACTGCTACCTG +
Preference number: 6 (lower is better)
Translates to: ISKDFSPQNPEQ*ERTSQSQDCYL
Trigger: CAGGTAGCAGTCTTGGCTTTGGGATGTCCTCTCCCACTGTTCAGGGTTCTGTGGGGAGAAATCCTTTGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp TTGTGGGAGAGCTTGGAGACGCCTGGGTGGAAGCAATaGAGGGATTTGAGTCTGAAGAGATGCCTTGGATGT +
Preference number: 6 (lower is better)
Translates to: LWESLETPGWKQ*RDLSLKRCLGC
Trigger: ACATCCAAGGCATCTCTTCAGACTCAAATCCCTCAATTGCTTCCACCCAGGCGTCTCCAAGCTCTCCCACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 72 bp CCAAATATTACGCTTCAGGTAACTTTCCCACCAGTCTaGAGGAAGAGAGCCCATGATGGGGTTCTGTGGCCT +
Preference number: 6 (lower is better)
Translates to: PNITLQVTFPPV*RKRAHDGVLWP
Trigger: AGGCCACAGAACCCCATCATGGGCTCTCTTCCTTCAGACTGGTGGGAAAGTTACCTGAAGCGTAATATTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 72 bp CCCAGAGAAGCAACCGGATCTCTTACATTTATCATCTaGGCTCTGGACATGGGGTCTCCTTTTCAGAGACCC +
Preference number: 6 (lower is better)
Translates to: PREATGSLTFII*ALDMGSPFQRP
Trigger: GGGTCTCTGAAAAGGAGACCCCATGTCCAGAGCTCAGATGATAAATGTAAGAGATCCGGTTGCTTCTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS TCA 72 bp AGACTTGTCCCCACTCAAGACATCTTTCTTGGCCTCTaGGGTCCAGCTCCATCTTCCAGACAGACACTTTTC +
Preference number: 6 (lower is better)
Translates to: RLVPTQDIFLGL*GPAPSSRQTLF
Trigger: GAAAAGTGTCTGTCTGGAAGATGGAGCTGGACCTCAGAGGCCAAGAAAGATGTCTTGAGTGGGGACAAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000117882.2
CDS GCA 72 bp AGATGGGTAGAATCAGAACTCAGTGAAGAAGAGGGCTaGCTGGTGTGCACAGGAGCTGTCTCAGACATAGTT +
Preference number: 6 (lower is better)
Translates to: RWVESELSEEEG*LVCTGAVSDIV
Trigger: AACTATGTCTGAGACAGCTCCTGTGCACACCAGGCAGCCCTCTTCTTCACTGAGTTCTGATTCTACCCATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp GAAGGGAAAATTAAATCAGTGGCCGAGGGAAAGTTCTaGGAAGCTCCAAGCAGGAAAGTGCTGCAAGAAGGG +
Preference number: 6 (lower is better)
Translates to: EGKIKSVAEGKF*EAPSRKVLQEG
Trigger: CCCTTCTTGCAGCACTTTCCTGCTTGGAGCTTCCCAGAACTTTCCCTCGGCCACTGATTTAATTTTCCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CCA 72 bp GAATTGTGGGGTGTTGGGAAGGGAAAATTAAATCAGTaGCCGAGGGAAAGTTCTGGGAAGCTCCAAGCAGGA +
Preference number: 6 (lower is better)
Translates to: ELWGVGKGKLNQ*PRESSGKLQAG
Trigger: TCCTGCTTGGAGCTTCCCAGAACTTTCCCTCGGCCACTGATTTAATTTTCCCTTCCCAACACCCCACAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp TCTCCACGGGAAGTACAGATGCAGGAAGATGGAGAATaGGGTTACTCACCACCCCAACCAAAGTGCTTTGTG +
Preference number: 6 (lower is better)
Translates to: SPREVQMQEDGE*GYSPPQPKCFV
Trigger: CACAAAGCACTTTGGTTGGGGTGGTGAGTAACCCAATTCTCCATCTTCCTGCATCTGTACTTCCCGTGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp GTCACTATGTTCAAATCCACACCAGGGTCTTTGGATTaGCTGGCTGGAATGACAGACGTAACCACACAGGGG +
Preference number: 6 (lower is better)
Translates to: VTMFKSTPGSLD*LAGMTDVTTQG
Trigger: CCCCTGTGTGGTTACGTCTGTCATTCCAGCCAGCAAATCCAAAGACCCTGGTGTGGATTTGAACATAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp AGCAGGAAAGTGCTGCAAGAAGGGACAGAGCAAGAGTaGCCTGTGGTGCTGGTCACTATGTTCAAATCCACA +
Preference number: 6 (lower is better)
Translates to: SRKVLQEGTEQE*PVVLVTMFKST
Trigger: TGTGGATTTGAACATAGTGACCAGCACCACAGGCAACTCTTGCTCTGTCCCTTCTTGCAGCACTTTCCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp CCCAAAGATGATGTGAGTGCTGAAGTCACATTGGAGTaGCTTGAGGTCACTGGAGGCTGGTTTGTGGACGAT +
Preference number: 6 (lower is better)
Translates to: PKDDVSAEVTLE*LEVTGGWFVDD
Trigger: ATCGTCCACAAACCAGCCTCCAGTGACCTCAAGCAACTCCAATGTGACTTCAGCACTCACATCATCTTTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 72 bp TGCCTGGTGTGCACAGGAGCTGTCTCAGACATAGTTTaGAGCGGTTCTATACTGCCAAAGATAGGCTTGAAG +
Preference number: 6 (lower is better)
Translates to: CLVCTGAVSDIV*SGSILPKIGLK
Trigger: CTTCAAGCCTATCTTTGGCAGTATAGAACCGCTTCAAACTATGTCTGAGACAGCTCCTGTGCACACCAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 72 bp GCAAAAGTGGCTTTGGGCTTGACCCCAAAGATGATGTaGGTGCTGAAGTCACATTGGAGTTGCTTGAGGTCA +
Preference number: 6 (lower is better)
Translates to: AKVALGLTPKMM*VLKSHWSCLRS
Trigger: TGACCTCAAGCAACTCCAATGTGACTTCAGCACTCACATCATCTTTGGGGTCAAGCCCAAAGCCACTTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 72 bp GATTGCTTTAGCCCATCTATGGCCCCAGGTGAGCTTTaGGAAGTATTTCTTTGGGATGGTGGCAAAAGTGGC +
Preference number: 6 (lower is better)
Translates to: DCFSPSMAPGEL*EVFLWDGGKSG
Trigger: GCCACTTTTGCCACCATCCCAAAGAAATACTTCTCAAAGCTCACCTGGGGCCATAGATGGGCTAAAGCAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp CTGCCTGGTGTGCACAGGAGCTGTCTCAGACATAGTTaGAAGCGGTTCTATACTGCCAAAGATAGGCTTGAA +
Preference number: 6 (lower is better)
Translates to: LPGVHRSCLRHS*KRFYTAKDRLE
Trigger: TTCAAGCCTATCTTTGGCAGTATAGAACCGCTTCAAACTATGTCTGAGACAGCTCCTGTGCACACCAGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp GTGCTGGTCACTATGTTCAAATCCACACCAGGGTCTTaGGATTTGCTGGCTGGAATGACAGACGTAACCACA +
Preference number: 6 (lower is better)
Translates to: VLVTMFKSTPGS*DLLAGMTDVTT
Trigger: TGTGGTTACGTCTGTCATTCCAGCCAGCAAATCCAAAGACCCTGGTGTGGATTTGAACATAGTGACCAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 90 bp TTGCTCACCCCCTTCAGTGTATCAGTGCTTCTAAGAGGGGATATCTaGATGGCACTAGTAAGAACCTGGCTAAAGATAGTGACCGTGTGT +
Preference number: 6 (lower is better)
Translates to: LLTPFSVSVLLRGDI*MALVRTWLKIVTVC
Trigger: ACACACGGTCACTATCTTTAGCCAGGTTCTTACTAGTGCCATCAAGATATCCCCTCTTAGAAGCACTGATACACTGAAGGGGGTGAGCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS TCA 72 bp TTTTCAATGGCCATTCTGGAGTCTGGACTAATGTCCTaGGAAAATGTCTCTTCCAAGATCCTGAGAGCTCTC +
Preference number: 6 (lower is better)
Translates to: FSMAILESGLMS*ENVSSKILRAL
Trigger: GAGAGCTCTCAGGATCTTGGAAGAGACATTTTCTCAGGACATTAGTCCAGACTCCAGAATGGCCATTGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017126.6
ENSMUST00000117882.2
CDS CCA 72 bp CTAAGAGGGGATATCTTGATGGCACTAGTAAGAACCTaGCTAAAGATAGTGACCGTGTGTACAGTGGGAATT +
Preference number: 6 (lower is better)
Translates to: LRGDILMALVRT*LKIVTVCTVGI
Trigger: AATTCCCACTGTACACACGGTCACTATCTTTAGCCAGGTTCTTACTAGTGCCATCAAGATATCCCCTCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp CCCTTCAGTGTATCAGTGCTTCTAAGAGGGGATATCTaGATGGCACTAGTAAGAACCTGGCTAAAGATAGTG +
Preference number: 6 (lower is better)
Translates to: PFSVSVLLRGDI*MALVRTWLKIV
Trigger: CACTATCTTTAGCCAGGTTCTTACTAGTGCCATCAAGATATCCCCTCTTAGAAGCACTGATACACTGAAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6
CDS CAA 72 bp AGCGCCCTGGCTCTCGGTTCCTTAGTGTTTTTGATTTaGTACCAATACAGAATGAAGGTTCCAATGATCTCA +
Preference number: 6 (lower is better)
Translates to: SALALGSLVFLI*YQYRMKVPMIS
Trigger: TGAGATCATTGGAACCTTCATTCTGTATTGGTACAAAATCAAAAACACTAAGGAACCGAGAGCCAGGGCGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017126.6