Pregenerated sensors for POM121L12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000084135Ensembl transcript IDs: ENSMUST00000117584.3
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACTGGGCAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGATAGGCATGAGAGATaGCTTGGGCTTTGCAGACCA | + |
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Preference number: 2 (lower is better) Translates to: TGQIRSNNKFQDVDLGLEDRHER*LGLCRP Trigger: TGGTCTGCAAAGCCCAAGTCATCTCTCATGCCTATC...CTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTGCCCAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| 3UTR-3UTR CAA 90 bp | AGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATGGCATGAGAGATGACTaGGGCTTTGCAGACCAGGTC | + |
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Preference number: 3 (lower is better) Translates to: SNNKFQDVDLGLEAEYSDGMRDD*GFADQV Trigger: GACCTGGTCTGCAAAGCCCAAGTCATCTCTCATGCC...ATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | AACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATAGGCACAGGCTCCAGTCTTaGGCCCAGGGGGTCGACAGG | + |
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Preference number: 4 (lower is better) Translates to: NNKFQDVDLGLEAEYSDRHRLQS*AQGVDR Trigger: CCTGTCGACCCCCTGGGCCCAAGACTGGAGCCTGTG...CCTATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR TCA 90 bp | ACTGGGCAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGCAGCGATCTCTGAGGTaGGCCCAGGGAGCTGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: TGQIRSNNKFQDVDLGLEQRSLR*AQGAAH Trigger: ATGGGCAGCTCCCTGGGCTCACCTCAGAGATCGCTG...CTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTGCCCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR TCA 90 bp | CAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGGCAGACAGCGATCTCTaGGGTGAGCCCAGGGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: QIRSNNKFQDVDLGLEAEADSDL*GEPREL Trigger: CAGCTCCCTGGGCTCACCTCAGAGATCGCTGTCTGC...CTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR GCA 90 bp | ACTGGGCAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGGAAGCTCCTCTGGATaGTCTGCAATGCGTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TGQIRSNNKFQDVDLGLEGSSSG*SAMRAP Trigger: GGGAGCACGCATTGCAGAGCATCCAGAGGAGCTTCC...CTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTGCCCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | ACTGGGCAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGGAACGTTGGGTCCATaGCTGTGCGGAACCCACTCA | + |
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Preference number: 4 (lower is better) Translates to: TGQIRSNNKFQDVDLGLEGTLGP*LCGTHS Trigger: TGAGTGGGTTCCGCACAGCCATGGACCCAACGTTCC...CTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTGCCCAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | AGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATGTCCCCTTCTTGCACTaGCTGAGAGCTCTCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: SNNKFQDVDLGLEAEYSDVPFLH*LRALST Trigger: AGTGCTGAGAGCTCTCAGCCAGTGCAAGAAGGGGAC...ATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | AACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATAGGGCATGCATGTCTGTGTaGATACAGGGATGGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: NNKFQDVDLGLEAEYSDRACMSV*IQGWGS Trigger: TGACCCCCATCCCTGTATCCACACAGACATGCATGC...CCTATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR GCA 90 bp | CAAACTGGGCAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTACTGGATGCTCTGCAATaGGTGCTCCCTGTTCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: QTGQIRSNNKFQDVDLGLLDALQ*VLPVLE Trigger: CTCTAGAACAGGGAGCACGCATTGCAGAGCATCCAG...TAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTGCCCAGTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR GCA 90 bp | AGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATGGCTCTAACACAGCATaGATGTCTGTGTGGATACAG | + |
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Preference number: 4 (lower is better) Translates to: SNNKFQDVDLGLEAEYSDGSNTA*MSVWIQ Trigger: CTGTATCCACACAGACATGCATGCTGTGTTAGAGCC...ATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | ATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCAGAGGCCCAGGCTTaGGAACAAAAGAAACAGCCA | + |
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Preference number: 4 (lower is better) Translates to: IRSNNKFQDVDLGLEAEYSEAQA*EQKKQP Trigger: TGGCTGTTTCTTTTGTTCCCAAGCCTGGGCCTCTGA...ATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | AGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATTTAGAGCTTTCCATGTaGGGCTCTAACACAGCATGC | + |
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Preference number: 4 (lower is better) Translates to: SNNKFQDVDLGLEAEYSDLELSM*GSNTAC Trigger: GCATGCTGTGTTAGAGCCCCACATGGAAAGCTCTAA...ATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| 3UTR CAA 72 bp | CAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTaGGGCTTAGAGGCAGAGTATTCTGATAGGCATGAG | + |
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Preference number: 4 (lower is better) Translates to: QIRSNNKFQDVD*GLEAEYSDRHE Trigger: CTCATGCCTATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CCA 90 bp | ATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATAGAACGCTTAGGTTCTaGGTTCTGTCTTCTATTTTT | + |
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Preference number: 4 (lower is better) Translates to: IRSNNKFQDVDLGLEAEYRTLRF*VLSSIF Trigger: AAAAATAGAAGACAGAACCCAGAACCTAAGCGTTCT...ATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS GCA 90 bp | TCTCCTTGGCACAAGGGTCTGGAAGCTCCTCTGGATGCTCTGCAATaGGTGCTCCCTGTTCTAGAGAAGCCAGGGGACTACCTCTGCCCT | + |
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Preference number: 5 (lower is better) Translates to: SPWHKGLEAPLDALQ*VLPVLEKPGDYLCP Trigger: AGGGCAGAGGTAGTCCCCTGGCTTCTCTAGAACAGGGAGCACGCATTGCAGAGCATCCAGAGGAGCTTCCAGACCCTTGTGCCAAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS CCA 90 bp | AGTCTACTGGAGTCTCCAAAGGGGATGACAGAGCTCAGACAAGAATaGAAATCCCCACCTGCCAAGGAGACTCCACAGGCTCCAGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SLLESPKGMTELRQE*KSPPAKETPQAPVL Trigger: CAAGACTGGAGCCTGTGGAGTCTCCTTGGCAGGTGGGGATTTCCATTCTTGTCTGAGCTCTGTCATCCCCTTTGGAGACTCCAGTAGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS GCA 90 bp | GCCTGGGTCTTCTTAGAGCTTTCCATGTGGGGCTCTAACACAGCATaGATGTCTGTGTGGATACAGGGATGGGGGTCAGTTTCCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: AWVFLELSMWGSNTA*MSVWIQGWGSVSFL Trigger: CAAGAAGGAAACTGACCCCCATCCCTGTATCCACACAGACATGCATGCTGTGTTAGAGCCCCACATGGAAAGCTCTAAGAAGACCCAGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CAA 90 bp | ACTGGGCAAATAAGAAGCAACAACAAATTCCAAGATGTTGATTTGGGCTTAGAGTTCAGAGGCCCAGGCTaGGGAACAAAAGAAACAGCC | + |
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Preference number: 5 (lower is better) Translates to: TGQIRSNNKFQDVDLGLEFRGPG*GTKETA Trigger: GGCTGTTTCTTTTGTTCCCAAGCCTGGGCCTCTGAA...CTCTAAGCCCAAATCAACATCTTGGAATTTGTTGTTGCTTCTTATTTGCCCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS-3UTR CAA 90 bp | TTCCAAGATGTTGATTTGGGCTTAGAGGCAGAGTATTCTGATAGGCATGAGAGAGGGTCAGTTTCCTTCTaGAAGACATTGAAGCTCATG | + |
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Preference number: 5 (lower is better) Translates to: FQDVDLGLEAEYSDRHERGSVSF*KTLKLM Trigger: CATGAGCTTCAATGTCTTCAAGAAGGAAACTGACCC...TCTCTCATGCCTATCAGAATACTCTGCCTCTAAGCCCAAATCAACATCTTGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS CAA 72 bp | GCCAGGGGACTACCTCTGCCCTCAGGAGGGGCAATCTaGACTGTCACCGGGCTGCAGGTCCACCCAGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: ARGLPLPSGGAI*TVTGLQVHPGF Trigger: GAACCCTGGGTGGACCTGCAGCCCGGTGACAGTCAAGATTGCCCCTCCTGAGGGCAGAGGTAGTCCCCTGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS CAA 90 bp | TCTAGAGAAGCCAGGGGACTACCTCTGCCCTCAGGAGGGGCAATCTaGACTGTCACCGGGCTGCAGGTCCACCCAGGGTTCCGTACACTC | + |
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Preference number: 6 (lower is better) Translates to: SREARGLPLPSGGAI*TVTGLQVHPGFRTL Trigger: GAGTGTACGGAACCCTGGGTGGACCTGCAGCCCGGTGACAGTCAAGATTGCCCCTCCTGAGGGCAGAGGTAGTCCCCTGGCTTCTCTAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS GCA 72 bp | CACAAGGGTCTGGAAGCTCCTCTGGATGCTCTGCAATaGGTGCTCCCTGTTCTAGAGAAGCCAGGGGACTAC | + |
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Preference number: 6 (lower is better) Translates to: HKGLEAPLDALQ*VLPVLEKPGDY Trigger: GTAGTCCCCTGGCTTCTCTAGAACAGGGAGCACGCATTGCAGAGCATCCAGAGGAGCTTCCAGACCCTTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS GCA 72 bp | GTCTCCTTGGCACAAGGGTCTGGAAGCTCCTCTGGATaGTCTGCAATGCGTGCTCCCTGTTCTAGAGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: VSLAQGSGSSSG*SAMRAPCSREA Trigger: GGCTTCTCTAGAACAGGGAGCACGCATTGCAGAGCATCCAGAGGAGCTTCCAGACCCTTGTGCCAAGGAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS GCA 72 bp | GATGACAGAGCTCAGACAAGAATGGAAATCCCCACCTaGCAAGGAGACTCCACAGGCTCCAGTCTTGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: DDRAQTRMEIPT*QGDSTGSSLGP Trigger: GGGCCCAAGACTGGAGCCTGTGGAGTCTCCTTGGCAGGTGGGGATTTCCATTCTTGTCTGAGCTCTGTCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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| CDS CCA 72 bp | GAGTCTCCAAAGGGGATGACAGAGCTCAGACAAGAATaGAAATCCCCACCTGCCAAGGAGACTCCACAGGCT | + |
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Preference number: 6 (lower is better) Translates to: ESPKGMTELRQE*KSPPAKETPQA Trigger: AGCCTGTGGAGTCTCCTTGGCAGGTGGGGATTTCCATTCTTGTCTGAGCTCTGTCATCCCCTTTGGAGACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000117584.3 |
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