RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POLRMT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020329

Ensembl transcript IDs: ENSMUST00000020580.13, ENSMUST00000159016.8, ENSMUST00000161662.8, ENSMUST00000162694.8

Found 325 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGTGCTGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTaGGGTGGAGGGGCCCCCAGATGGGAGAGGGCTGGCAGGGACGCA +
Preference number: 1 (lower is better)
Translates to: QCCGCDSTPGWVGEL*GGGAPRWERAGRDA
Trigger: TGCGTCCCTGCCAGCCCTCTCCCATCTGGGGGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACAGCACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR CCA 90 bp CGGAGCAGAAACGCTTCTTCAGGAACTTGGCCAGGTCTTCCAGGATaGGCTGGCTGTGCAGGCGCACGAATTGCTCGCGGCATACCTCGT +
Preference number: 1 (lower is better)
Translates to: RSRNASSGTWPGLPG*AGCAGARIARGIPR
Trigger: ACGAGGTATGCCGCGAGCAATTCGTGCGCCTGCACAGCCAGCCCATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGCGTTTCTGCTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR-3UTR CCA 90 bp CTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGGGGCGTGACCCATGGGTGGGTGAGCTGTaGGGTGGAGGGGCCCCCAGA +
Preference number: 2 (lower is better)
Translates to: LGLAVIGLYDGDAQGRDPWVGEL*GGGAPR
Trigger: TCTGGGGGCCCCTCCACCCCACAGCTCACCCACCCA...TGGGTCACGCCCCTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR-3UTR TCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGACCAGGTTGGGTGGGTaGGCTGTGGGGTGGAGGGGC +
Preference number: 2 (lower is better)
Translates to: STELVRVMLWRPPFTWTLTRLGG*AVGWRG
Trigger: GCCCCTCCACCCCACAGCTCACCCACCCAACCTGGT...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR-3UTR TCA 90 bp CTCTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGGCCCTCCGTAGCGTGTaGCCCCATACACCACCGTCA +
Preference number: 2 (lower is better)
Translates to: LSSTELVRVMLWRPPFTWALRSV*PHTPPS
Trigger: TGACGGTGGTGTATGGGGTCACACGCTACGGAGGGC...CCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR-3UTR CCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGTCCTTGGCGTCCTGCTaGCGGAACTCCTCCACCTGT +
Preference number: 2 (lower is better)
Translates to: STELVRVMLWRPPFTWTLSLASC*RNSSTC
Trigger: ACAGGTGGAGGAGTTCCGCCAGCAGGACGCCAAGGA...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR-3UTR TCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGGCGCACGAGGTAGTGTaGGGCTTCCCAGACAAACTC +
Preference number: 2 (lower is better)
Translates to: STELVRVMLWRPPFTWTLAHEVV*GFPDKL
Trigger: GAGTTTGTCTGGGAAGCCTCACACTACCTCGTGCGC...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR CCA 72 bp AACGCTTCTTCAGGAACTTGGCCAGGTCTTCCAGGATaGGCTGGCTGTGCAGGCGCACGAATTGCTCGCGGC +
Preference number: 3 (lower is better)
Translates to: NASSGTWPGLPG*AGCAGARIARG
Trigger: GCCGCGAGCAATTCGTGCGCCTGCACAGCCAGCCCATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGCGTT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
3UTR GCA 72 bp AAGGTACCTGTCTTTGGCAAGGACTGTAGTGTCTCCTaGAGCTTGGTGACCAGGGCGCGCTCCGAGGACTTT +
Preference number: 3 (lower is better)
Translates to: KVPVFGKDCSVS*SLVTRARSEDF
Trigger: AAAGTCCTCGGAGCGCGCCCTGGTCACCAAGCTGCAGGAGACACTACAGTCCTTGCCAAAGACAGGTACCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCCTCAGGTGTGCCCTCTaGCCGGAGCTGCCGCACCCG +
Preference number: 4 (lower is better)
Translates to: CGCDSTPGWVGELWGGGALRCAL*PELPHP
Trigger: CGGGTGCGGCAGCTCCGGGCAGAGGGCACACCTGAG...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCGGACCGGACTGCGTGTaGCACCTCCATGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: CGCDSTPGWVGELWGGGAGPDCV*HLHAAG
Trigger: GCCTGCTGCATGGAGGTGGCACACGCAGTCCGGTCC...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCAGCAGCTGGAGGTACTaGGAGTACCGCTGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: CGCDSTPGWVGELWGGGASSWRY*EYRCPS
Trigger: GCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCT...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACTCCGAAGGCGGGCGGTaGGGCCCAGGGGAGCGCAGA +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDSEGGR*GPGERR
Trigger: TCTGCGCTCCCCTGGGCCCCACCGCCCGCCTTCGGA...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGGGGCGTGACCCATGGAGGACCAGGATCTaGGCCTCCACCGCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: LGLAVIGLYDGDAQGRDPWRTRI*ASTALA
Trigger: AGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCA...TGGGTCACGCCCCTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGCTGCCTCACGGGAGCTaGGCCTCCCCAGAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLLPHGS*ASPEQP
Trigger: AGGCTGCTCTGGGGAGGCTCAGCTCCCGTGAGGCAG...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACGGACCAGGGCTGTTGTaGAGGGGCCTCCAGTGGGCC +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDGPGLL*RGLQWA
Trigger: GGCCCACTGGAGGCCCCTGCACAACAGCCCTGGTCC...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACGCATCCAGGGGGCCGTaGAGCTGGGCAGGAGGGCAT +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDASRGP*SWAGGH
Trigger: ATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGC...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCATGGTGCGAACATCCTaGTCCCTGCGTCCCATGCAC +
Preference number: 4 (lower is better)
Translates to: CGCDSTPGWVGELWGGGAMVRTS*SLRPMH
Trigger: GTGCATGGGACGCAGGGACCAGGATGTTCGCACCAT...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACAGGCAGGGCGCCACCTaGGTGTCAGACGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDRQGAT*VSDASS
Trigger: GCTGCTGGCGTCTGACACCCAGGTGGCGCCCTGCCT...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACAGGGGGCCGTGCAGCTaGGCAGGAGGGCATTGCTCC +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDRGPCS*AGGHCS
Trigger: GGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCT...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCCACATGGTAAAGCACTaGGATGGAGCGCTGAGCACC +
Preference number: 4 (lower is better)
Translates to: CGCDSTPGWVGELWGGGAHMVKH*DGALST
Trigger: GGTGCTCAGCGCTCCATCCCAGTGCTTTACCATGTG...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACGTAGGCAGCAGGGTCTaGGGACCGGACTGCGTGTGC +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDVGSRV*GPDCVC
Trigger: GCACACGCAGTCCGGTCCCCAGACCCTGCTGCCTAC...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCCAGGACCAGGTCAGTaGAGAGCAGCTGGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDPGPGQ*RAAGAG
Trigger: TCCAGCCCCAGCTGCTCTTCACTGACCTGGTCCTGG...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGTCTCTCGAGCCACCTTaGGGCAACGCGCCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGSLEPP*GNAPAP
Trigger: AGGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGA...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGGGGCGTGACCCAATAGGAGCACAGGTCTaGGGAGAGGCCAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: LGLAVIGLYDGDAQGRDPIGAQV*GEASIL
Trigger: AAGGATGCTGGCCTCTCCCCAGACCTGTGCTCCTAT...TGGGTCACGCCCCTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGTGCAGGGGCCTCCAGTaGGCCCAGCGATTCCCAGTA +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLCRGLQ*AQRFPV
Trigger: TACTGGGAATCGCTGGGCCCACTGGAGGCCCCTGCA...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGTGCGTGAAGGCAGGGTaGGGCTTAAGGATGCCCACC +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLCVKAG*GLRMPT
Trigger: GGTGGGCATCCTTAAGCCTCACCCTGCCTTCACGCA...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACGGCATCTGCACTGCCTaGACCAGCAGCTCCGCCAAT +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDGICTA*TSSSAN
Trigger: ATTGGCGGAGCTGCTGGTGCAGGCAGTGCAGATGCC...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp TTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGTGGGCAGGAGGGCATTaGTCCAGCAGACGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: FYLDLGLAVIGLYDGDAQWAGGH*SSRRWC
Trigger: GCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCA...CTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTCTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGCCTTGGCTTTCTTCCTaGCCAGGGCCTCTGCCTCAC +
Preference number: 4 (lower is better)
Translates to: LSSTELVRVMLWRPPFTWPWLSS*PGPLPH
Trigger: GTGAGGCAGAGGCCCTGGCCAGGAAGAAAGCCAAGG...CCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CTCTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGCGTGGATGTGTTAACTaGGCTTGGGGCCTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: LSSTELVRVMLWRPPFTWRGCVN*AWGLWR
Trigger: CCGCCACAGGCCCCAAGCCCAGTTAACACATCCACG...CCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGTGGTGGGCACAGCATaGGCACTTCCGTGGTCTCGA +
Preference number: 4 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGVVGTA*ALPWSR
Trigger: TCGAGACCACGGAAGTGCCCATGCTGTGCCCACCAC...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGGGGCGTGACCCAGTGAGGGCTTGCTTCTaGTGGTCAACTTCCTTTTGG +
Preference number: 4 (lower is better)
Translates to: LGLAVIGLYDGDAQGRDPVRACF*WSTSFW
Trigger: CCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCTCAC...TGGGTCACGCCCCTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGCGCTGCCCCAGCTTCTaGACATGGTTAGTGACCTGC +
Preference number: 4 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGRCPSF*TWLVTC
Trigger: GCAGGTCACTAACCATGTGCAGAAGCTGGGGCAGCG...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACGATACAGGGCCTCGCTaGGCAGACTGTGCATCTCTC +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDDTGPR*ADCASL
Trigger: GAGAGATGCACAGTCTGCGCAGCGAGGCCCTGTATC...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCCGAAGGCGGGCGGTaGGGCCCAGGGGAGCGCAGA +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSEGGR*GPGERR
Trigger: TCTGCGCTCCCCTGGGCCCCACCGCCCGCCTTCGGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCTTTCCTCTGAGTTCGTaGGTGTTCCCTTCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: CGCDSTPGWVGELWGGGAFPLSS*VFPSCL
Trigger: CAAGCAAGAAGGGAACACCCACGAACTCAGAGGAAA...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGCCTTCTCCACCGACTaGACACAGACACTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGAFSTD*TQTLEL
Trigger: GAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGC...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGACTTGTGCACTGGTGTaGAGCCGGGTGGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLTCALV*SRVAAD
Trigger: ATCAGCTGCCACCCGGCTCCACACCAGTGCACAAGT...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGCTCGGCCTGGTGAACTaGCAGGTGGGAAATGTAGGC +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLLGLVN*QVGNVG
Trigger: GCCTACATTTCCCACCTGCCAGTTCACCAGGCCGAG...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp TTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGACTGTCTCGGCCTGGTaGACTGGCAGGTGGGAAATG +
Preference number: 4 (lower is better)
Translates to: FYLDLGLAVIGLYDGDAQTVSAW*TGRWEM
Trigger: CATTTCCCACCTGCCAGTTCACCAGGCCGAGACAGT...CTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCTCAGGTGTGCCCTCTaGCCGGAGCTGCCGCACCCG +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYLRCAL*PELPHP
Trigger: CGGGTGCGGCAGCTCCGGGCAGAGGGCACACCTGAG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCCCTCATCTCAGGTGTaGCCTCTGCCCGGAGCTGCC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIPSSQV*PLPGAA
Trigger: GGCAGCTCCGGGCAGAGGGCACACCTGAGATGAGGG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGGACCGGACTGCGTGTaGCACCTCCATGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIGPDCV*HLHAAG
Trigger: GCCTGCTGCATGGAGGTGGCACACGCAGTCCGGTCC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACTCCTTTTGGCGCCTCTaGTTCACCCTTTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LIYRAGEGDALEATFYLDSFWRL*FTLFSA
Trigger: GGCTGAGAAAAGGGTGAAGCAGAGGCGCCAAAAGGA...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGTCCTGTGTGAGGGCTTaGTTCTGCTGGTCAACTTCC +
Preference number: 4 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGSCVRA*FCWSTS
Trigger: GGAAGTTGACCAGCAGAAGCAAGCCCTCACACAGGA...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTGGAGGACCAGGATCTaGGCCTCCACCGCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIWRTRI*ASTALA
Trigger: AGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGGACCAGGGCTGTTGTaGAGGGGCCTCCAGTGGGCC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYGPGLL*RGLQWA
Trigger: GGCCCACTGGAGGCCCCTGCACAACAGCCCTGGTCC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020580.13
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGCATCCAGGGGGCCGTaGAGCTGGGCAGGAGGGCAT +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYASRGP*SWAGGH
Trigger: ATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGAAGAGCAGCTGGGGCTaGAAGCCTTCTTCCATCATC +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLKSSWG*KPSSII
Trigger: GATGATGGAAGAAGGCTTCCAGCCCCAGCTGCTCTT...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGACTGGACACAGACACTaGAGCTCAGCTCCACATGCA +
Preference number: 4 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGTGHRH*SSAPHA
Trigger: TGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGT...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTGCAGGGGCCTCCAGTaGGCCCAGCGATTCCCAGTA +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFICRGLQ*AQRFPV
Trigger: TACTGGGAATCGCTGGGCCCACTGGAGGCCCCTGCA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020580.13
CDS-3UTR TCA 90 bp CTCTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGCAGCATCCTTCAGCATaGGGAACACATAGACCAGCT +
Preference number: 4 (lower is better)
Translates to: LSSTELVRVMLWRPPFTWQHPSA*GTHRPA
Trigger: AGCTGGTCTATGTGTTCCTCATGCTGAAGGATGCTG...CCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTGCGTGAAGGCAGGGTaGGGCTTAAGGATGCCCACC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFICVKAG*GLRMPT
Trigger: GGTGGGCATCCTTAAGCCTCACCCTGCCTTCACGCA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGACGGTGTTGTACATGTaGAGTGTGAGCACCTGCTGT +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLTVLYM*SVSTCC
Trigger: ACAGCAGGTGCTCACACTGCACATGTACAACACCGT...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CTCTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGGAACCTGCATCAGTATaGTCACAAACTCCCCTTCGC +
Preference number: 4 (lower is better)
Translates to: LSSTELVRVMLWRPPFTWEPASV*SQTPLR
Trigger: GCGAAGGGGAGTTTGTGAGCATACTGATGCAGGTTC...CCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGGCATCTGCACTGCCTaGACCAGCAGCTCCGCCAAT +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIGICTA*TSSSAN
Trigger: ATTGGCGGAGCTGCTGGTGCAGGCAGTGCAGATGCC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020580.13
CDS-3UTR CCA 90 bp TTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGAGGGCTTGCTTCTGCTaGTCAACTTCCTTTTGGCGC +
Preference number: 4 (lower is better)
Translates to: FYLDLGLAVIGLYDGDAQRACFC*STSFWR
Trigger: GCGCCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCT...CTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCCTTGGCTTTCTTCCTaGCCAGGGCCTCTGCCTCAC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIPWLSS*PGPLPH
Trigger: GTGAGGCAGAGGCCCTGGCCAGGAAGAAAGCCAAGG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp TTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGTGCTTCAGACACCTCTaGATGGTGCGAACATCCTGG +
Preference number: 4 (lower is better)
Translates to: FYLDLGLAVIGLYDGDAQCFRHL*MVRTSW
Trigger: CCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCA...CTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCGTGGATGTGTTAACTaGGCTTGGGGCCTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIRGCVN*AWGLWR
Trigger: CCGCCACAGGCCCCAAGCCCAGTTAACACATCCACG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCCAGGACCAGGTCAGTaGAGAGCAGCTGGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYPGPGQ*RAAGAG
Trigger: TCCAGCCCCAGCTGCTCTTCACTGACCTGGTCCTGG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCTCTCGAGCCACCTTaGGGCAACGCGCCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSLEPP*GNAPAP
Trigger: AGGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCAGTCAGCCAGTGCTaGATGGCCCGCGTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSVSQC*MARVLV
Trigger: CACCAGCACGCGGGCCATTCAGCACTGGCTGACTGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGACACCTCTGGATGGTaGGAACATCCTGGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIDTSGW*EHPGPC
Trigger: GCAGGGACCAGGATGTTCGCACCATCCAGAGGTGTC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTATAAGGGGCTCACCCTaGGCAGGCAGGACCTTCAGA +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIIRGSP*AGRTFR
Trigger: TCTGAAGGTCCTGCCTGCGCAGGGTGAGCCCCTTAT...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCGCTGCCCCAGCTTCTaGACATGGTTAGTGACCTGC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIRCPSF*TWLVTC
Trigger: GCAGGTCACTAACCATGTGCAGAAGCTGGGGCAGCG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACAGCAGCTGGAGGTACTaGGAGTACCGCTGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSSWRY*EYRCPS
Trigger: GCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCT...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGCTCCGCCAATTGCTTaGCCAGCTGTAGCAGCACTG +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIAPPIA*PAVAAL
Trigger: CAGTGCTGCTACAGCTGGGCAAGCAATTGGCGGAGC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020580.13
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGACTGTAGTGTCTCCTaGAGCTTGGTGACCAGGGCG +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIDCSVS*SLVTRA
Trigger: CGCCCTGGTCACCAAGCTGCAGGAGACACTACAGTC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTCCAGCAGTTCAGCATaGCCCCACTCCCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFISSSSA*PHSLRT
Trigger: TGTCCTGAGGGAGTGGGGCCATGCTGAACTGCTGGA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTATGGTGCGAACATCCTaGTCCCTGCGTCCCATGCAC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIMVRTS*SLRPMH
Trigger: GTGCATGGGACGCAGGGACCAGGATGTTCGCACCAT...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGCCTTCTCCACCGACTaGACACAGACACTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIAFSTD*TQTLEL
Trigger: GAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGAGGGGGCCGTGCAGCTaGGCAGGAGGGCATTGCTCC +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWRGPCS*AGGHCS
Trigger: GGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCT...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTACTTGTGCACTGGTGTaGAGCCGGGTGGCAGCTGAT +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFITCALV*SRVAAD
Trigger: ATCAGCTGCCACCCGGCTCCACACCAGTGCACAAGT...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCCAGGTCTTCCAGGATaGGCTGGCTGTGCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYPGLPG*AGCAGA
Trigger: TGCGCCTGCACAGCCAGCCCATCCTGGAAGACCTGG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTAGCGGAGCTCCTTCTTaGGCTGCAGAAGCCACCAAA +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFISGAPS*AAEATK
Trigger: TTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCT...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCTCAGGTGTGCCCTCTaGCCGGAGCTGCCGCACCCG +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMLRCAL*PELPHP
Trigger: CGGGTGCGGCAGCTCCGGGCAGAGGGCACACCTGAG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGCCCTCATCTCAGGTGTaGCCTCTGCCCGGAGCTGCC +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWPSSQV*PLPGAA
Trigger: GGCAGCTCCGGGCAGAGGGCACACCTGAGATGAGGG...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGACATGGTTAGTGACCTaGTTCTGCTTCACCAAATGC +
Preference number: 4 (lower is better)
Translates to: STELVRVMLWRPPFTWTLTWLVT*FCFTKC
Trigger: GCATTTGGTGAAGCAGAAGCAGGTCACTAACCATGT...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCCTTGGCTTTCTTCCTaGCCAGGGCCTCTGCCTCAC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYPWLSS*PGPLPH
Trigger: GTGAGGCAGAGGCCCTGGCCAGGAAGAAAGCCAAGG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTATAGGAGCACAGGTCTaGGGAGAGGCCAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIIGAQV*GEASIL
Trigger: AAGGATGCTGGCCTCTCCCCAGACCTGTGCTCCTAT...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCGTGGATGTGTTAACTaGGCTTGGGGCCTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYRGCVN*AWGLWR
Trigger: CCGCCACAGGCCCCAAGCCCAGTTAACACATCCACG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTAGGCAGGGCGCCACCTaGGTGTCAGACGCCAGCAGC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRRQGAT*VSDASS
Trigger: GCTGCTGGCGTCTGACACCCAGGTGGCGCCCTGCCT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGGTAGGCAGCAGGGTCTaGGGACCGGACTGCGTGTGC +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWVGSRV*GPDCVC
Trigger: GCACACGCAGTCCGGTCCCCAGACCCTGCTGCCTAC...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTGCCATCCTGGTGAACTaGCAGGTGGGAAATGTAGGC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIAILVN*QVGNVG
Trigger: GCCTACATTTCCCACCTGCCAGTTCACCAGGATGGC...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCCTTGGCGTCCTGCTaGCGGAACTCCTCCACCTGT +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSLASC*RNSSTC
Trigger: ACAGGTGGAGGAGTTCCGCCAGCAGGACGCCAAGGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCTCCACCTGGTGAACTaGCAGGTGGGAAATGTAGGC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFILHLVN*QVGNVG
Trigger: GCCTACATTTCCCACCTGCCAGTTCACCAGGTGGAG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCTGCCTCACGGGAGCTaGGCCTCCCCAGAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMLPHGS*ASPEQP
Trigger: AGGCTGCTCTGGGGAGGCTCAGCTCCCGTGAGGCAG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCAGGAGCCATCCTGGTaGACTGGCAGGTGGGAAATG +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYQEPSW*TGRWEM
Trigger: CATTTCCCACCTGCCAGTTCACCAGGATGGCTCCTG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTCAGTCAGCCAGTGCTaGATGGCCCGCGTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWSVSQC*MARVLV
Trigger: CACCAGCACGCGGGCCATTCAGCACTGGCTGACTGA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCCCTCATCTCAGGTGTaGCCTCTGCCCGGAGCTGCC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRPSSQV*PLPGAA
Trigger: GGCAGCTCCGGGCAGAGGGCACACCTGAGATGAGGG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTCCTGTGTGAGGGCTTaGTTCTGCTGGTCAACTTCC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFISCVRA*FCWSTS
Trigger: GGAAGTTGACCAGCAGAAGCAAGCCCTCACACAGGA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCGCTGCCCCAGCTTCTaGACATGGTTAGTGACCTGC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYRCPSF*TWLVTC
Trigger: GCAGGTCACTAACCATGTGCAGAAGCTGGGGCAGCG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTGGGCAGGAGGGCATTaGTCCAGCAGACGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWWAGGH*SSRRWC
Trigger: GCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGATACAGGGCCTCGCTaGGCAGACTGTGCATCTCTC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYDTGPR*ADCASL
Trigger: GAGAGATGCACAGTCTGCGCAGCGAGGCCCTGTATC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCGTCAAGGGGTTGTCTaGAGAGTCCAAGATCTCCTC +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIRQGVV*RVQDLL
Trigger: GAGGAGATCTTGGACTCTGCAGACAACCCCTTGACG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACATGGTGCGAACATCCTaGTCCCTGCGTCCCATGCAC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYMVRTS*SLRPMH
Trigger: GTGCATGGGACGCAGGGACCAGGATGTTCGCACCAT...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTGCTTCAGACACCTCTaGATGGTGCGAACATCCTGG +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFICFRHL*MVRTSW
Trigger: CCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTACTGGACACAGACACTaGAGCTCAGCTCCACATGCA +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFITGHRH*SSAPHA
Trigger: TGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGT...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGAGGGGGCCGTGCAGCTaGGCAGGAGGGCATTGCTCC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMRGPCS*AGGHCS
Trigger: GGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCT...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCCAGAACTCCTGTGTaGGGGCTTGCTTCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSRTPV*GLASAG
Trigger: ACCAGCAGAAGCAAGCCCTCACACAGGAGTTCTGGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCTGCCTCACGGGAGCTaGGCCTCCCCAGAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDLPHGS*ASPEQP
Trigger: AGGCTGCTCTGGGGAGGCTCAGCTCCCGTGAGGCAG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCCAGGACCAGGTCAGTaGAGAGCAGCTGGGGCTGGA +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRPGPGQ*RAAGAG
Trigger: TCCAGCCCCAGCTGCTCTTCACTGACCTGGTCCTGG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTGATAGGGCTGTATaGTGGGGATGCCCAGGGGCG +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRGDRAV*WGCPGA
Trigger: CGCCCCTGGGCATCCCCATCATACAGCCCTATCACC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGGGAGGCCGGTCCACCTaGACCTTCTTCACCCTCATC +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWGGRST*TFFTLI
Trigger: GATGAGGGTGAAGAAGGTGCAGGTGGACCGGCCTCC...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTGGGCAGGAGGGCATTaGTCCAGCAGACGCTGGTGC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRWAGGH*SSRRWC
Trigger: GCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGCATCCAGGGGGCCGTaGAGCTGGGCAGGAGGGCAT +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDASRGP*SWAGGH
Trigger: ATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGCGAAGGCTAGGCGCATaGGCAGCGAGTCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWRRLGA*AASLPS
Trigger: AGAAGGGAGACTCGCTGCGCATGCGCCTAGCCTTCG...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGGACCGGACTGCGTGTaGCACCTCCATGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWGPDCV*HLHAAG
Trigger: GCCTGCTGCATGGAGGTGGCACACGCAGTCCGGTCC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTGGCACGCATTAGTTTaGTGGAGCTCAGCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIWHALV*WSSASR
Trigger: CCTACTTGCTGAGCTCCACCAAACTAATGCGTGCCA...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGTAGGCAGCAGGGTCTaGGGACCGGACTGCGTGTGC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWVGSRV*GPDCVC
Trigger: GCACACGCAGTCCGGTCCCCAGACCCTGCTGCCTAC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTCCTTGGCGTCCTGCTaGCGGAACTCCTCCACCTGG +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRSLASC*RNSSTW
Trigger: CCAGGTGGAGGAGTTCCGCCAGCAGGACGCCAAGGA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTGCGTGAAGGCAGGGTaGGGCTTAAGGATGCCCACC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRCVKAG*GLRMPT
Trigger: GGTGGGCATCCTTAAGCCTCACCCTGCCTTCACGCA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGTCTCTCGAGCCACCTTaGGGCAACGCGCCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMSLEPP*GNAPAP
Trigger: AGGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGA...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGCCCTCCGTAGCGTGTaGCCCCATACACCACCGTCA +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWALRSV*PHTPPS
Trigger: TGACGGTGGTGTATGGGGTCACACGCTACGGAGGGC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGGTGATAGGGCTGTATaGTGGGGATGCCCAGGGGCG +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWGDRAV*WGCPGA
Trigger: CGCCCCTGGGCATCCCCATCATACAGCCCTATCACC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCCTGTGTGAGGGCTTaGTTCTGCTGGTCAACTTCC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSCVRA*FCWSTS
Trigger: GGAAGTTGACCAGCAGAAGCAAGCCCTCACACAGGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGTGGAGGACCAGGATCTaGGCCTCCACCGCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWWRTRI*ASTALA
Trigger: AGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCA...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGATAAGGGGCTCACCCTaGGCAGGCAGGACCTTCAGA +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWIRGSP*AGRTFR
Trigger: TCTGAAGGTCCTGCCTGCGCAGGGTGAGCCCCTTAT...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACAAGAGCAGCTGGGGCTaGAAGCCTTCTTCCATCATC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYKSSWG*KPSSII
Trigger: GATGATGGAAGAAGGCTTCCAGCCCCAGCTGCTCTT...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTGTGTTAACTGGGCTTaGGGCCTGTGGCGGTGGACG +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRCVNWA*GLWRWT
Trigger: CGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTAAAGCACTGGGATaGAGCGCTGAGCACCCTGCC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRGKALG*SAEHPA
Trigger: GGCAGGGTGCTCAGCGCTCCATCCCAGTGCTTTACC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGTGGTGGGCACAGCATaGGCACTTCCGTGGTCTCGA +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRVVGTA*ALPWSR
Trigger: TCGAGACCACGGAAGTGCCCATGCTGTGCCCACCAC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGTAGGCAGCAGGGTCTaGGGACCGGACTGCGTGTGC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDVGSRV*GPDCVC
Trigger: GCACACGCAGTCCGGTCCCCAGACCCTGCTGCCTAC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTCCTTGGCGTCCTGCTaGCGGAACTCCTCCACCTGT +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRSLASC*RNSSTC
Trigger: ACAGGTGGAGGAGTTCCGCCAGCAGGACGCCAAGGA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCCAGGTCTTCCAGGATaGGCTGGCTGTGCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWPGLPG*AGCAGA
Trigger: TGCGCCTGCACAGCCAGCCCATCCTGGAAGACCTGG...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGAGCGGAGCTCCTTCTTaGGCTGCAGAAGCCACCAAA +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWSGAPS*AAEATK
Trigger: TTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCT...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTCCAGAACTCCTGTGTaGGGGCTTGCTTCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWSRTPV*GLASAG
Trigger: ACCAGCAGAAGCAAGCCCTCACACAGGAGTTCTGGA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGCCCTCCGTAGCGTGTaGCCCCATACACCACCGTCA +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDALRSV*PHTPPS
Trigger: TGACGGTGGTGTATGGGGTCACACGCTACGGAGGGC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGAGGCCGGTCCACCTaGACCTTCTTCACCCTCATC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMGGRST*TFFTLI
Trigger: GATGAGGGTGAAGAAGGTGCAGGTGGACCGGCCTCC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGTGAGGGCTTGCTTCTaGTGGTCAACTTCCTTTTGG +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYVRACF*WSTSFW
Trigger: CCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCTCAC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGAACATCCTGGTCCCTaGGTCCCATGCACTGGAGTG +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWREHPGP*VPCTGV
Trigger: CACTCCAGTGCATGGGACGCAGGGACCAGGATGTTC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGAACCTGCATCAGTATaGTCACAAACTCCCCTTCGC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYEPASV*SQTPLR
Trigger: GCGAAGGGGAGTTTGTGAGCATACTGATGCAGGTTC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTATAAGGGGCTCACCCTaGGCAGGCAGGACCTTCAGA +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRIRGSP*AGRTFR
Trigger: TCTGAAGGTCCTGCCTGCGCAGGGTGAGCCCCTTAT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACAGCAGCTGGAGGTACTaGGAGTACCGCTGCCCCAGC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDSSWRY*EYRCPS
Trigger: GCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCT...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGTCCAGCAGACGCTGGTaGTGTGTGGTACCCTCCGTG +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWSSRRW*CVVPSV
Trigger: CACGGAGGGTACCACACAGCACCAGCGTCTGCTGGA...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCGAAGGCTAGGCGCATaGGCAGCGAGTCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMRRLGA*AASLPS
Trigger: AGAAGGGAGACTCGCTGCGCATGCGCCTAGCCTTCG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTCCAGCAGTTCAGCATaGCCCCACTCCCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRSSSSA*PHSLRT
Trigger: TGTCCTGAGGGAGTGGGGCCATGCTGAACTGCTGGA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTGTTCCCTTCTTGCTTaGCTGCAGGTAGCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWCSLLA*LQVASQ
Trigger: CTGGCTGGCTACCTGCAGCCAAGCAAGAAGGGAACA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGTGTGTTAACTGGGCTTaGGGCCTGTGGCGGTGGACG +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWCVNWA*GLWRWT
Trigger: CGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACA...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGGTAAAGCACTGGGATaGAGCGCTGAGCACCCTGCC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWGKALG*SAEHPA
Trigger: GGCAGGGTGCTCAGCGCTCCATCCCAGTGCTTTACC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTGGCACGCATTAGTTTaGTGGAGCTCAGCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYWHALV*WSSASR
Trigger: CCTACTTGCTGAGCTCCACCAAACTAATGCGTGCCA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCCAGGTCTTCCAGGATaGGCTGGCTGTGCAGGCGCA +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDPGLPG*AGCAGA
Trigger: TGCGCCTGCACAGCCAGCCCATCCTGGAAGACCTGG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGCACGAGGTAGTGTaGGGCTTCCCAGACAAACTC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMAHEVV*GFPDKL
Trigger: GAGTTTGTCTGGGAAGCCTCACACTACCTCGTGCGC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGGAGGCCGGTCCACCTaGACCTTCTTCACCCTCATC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDGGRST*TFFTLI
Trigger: GATGAGGGTGAAGAAGGTGCAGGTGGACCGGCCTCC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGAACATCCTGGTCCCTaGGTCCCATGCACTGGAGTG +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWEHPGP*VPCTGV
Trigger: CACTCCAGTGCATGGGACGCAGGGACCAGGATGTTC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGACACCTCTGGATGGTaGGAACATCCTGGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWDTSGW*EHPGPC
Trigger: GCAGGGACCAGGATGTTCGCACCATCCAGAGGTGTC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGCTCCGCCAATTGCTTaGCCAGCTGTAGCAGCACTG +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWAPPIA*PAVAAL
Trigger: CAGTGCTGCTACAGCTGGGCAAGCAATTGGCGGAGC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACTCCAGCAGACGCTGGTaGTGTGTGGTACCCTCCGTG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDSSRRW*CVVPSV
Trigger: CACGGAGGGTACCACACAGCACCAGCGTCTGCTGGA...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGAAGGCTAGGCGCATaGGCAGCGAGTCTCCCTTCT +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDRRLGA*AASLPS
Trigger: AGAAGGGAGACTCGCTGCGCATGCGCCTAGCCTTCG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGGGAAGCCATTTTTCTaGTTCAGAGTGTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYGKPFF*FRVLGF
Trigger: GAAGCCCAACACTCTGAAGCAGAAAAATGGCTTCCC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCCTTCTCCACCGACTaGACACAGACACTGGAGCTC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMAFSTD*TQTLEL
Trigger: GAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGCTCCTTGGACATTACTaGAGCCTTCTCCACCGACTG +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWLLGHY*SLLHRL
Trigger: CAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAG...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCACATGGTAAAGCACTaGGATGGAGCGCTGAGCACC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRHMVKH*DGALST
Trigger: GGTGCTCAGCGCTCCATCCCAGTGCTTTACCATGTG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGTCAGGTTGATCAGGTaGATCTTAAGCCAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYVRLIR*ILSQSR
Trigger: TCTGGACTGGCTTAAGATCCACCTGATCAACCTGAC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCAGCTGCTTTTCCTCTaGGTTCGTGGGTGTTCCCTT +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRQLLFL*VRGCSL
Trigger: AAGGGAACACCCACGAACTCAGAGGAAAAGCAGCTG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR TCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCAGGAGCCATCCTGGTaGACTGGCAGGTGGGAAATG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDQEPSW*TGRWEM
Trigger: CATTTCCCACCTGCCAGTTCACCAGGATGGCTCCTG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGCGCACGAGGTAGTGTaGGGCTTCCCAGACAAACTC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDAHEVV*GFPDKL
Trigger: GAGTTTGTCTGGGAAGCCTCACACTACCTCGTGCGC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTAGAGTGTTGGGCTTCTaGCTCTCATCTACCGAGCTG +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRRVLGF*LSSTEL
Trigger: CAGCTCGGTAGATGAGAGTCAGAAGCCCAACACTCT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR TCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGAACTCCTCCACCTGGTaGACTGGCAGGTGGGAAATG +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMNSSTW*TGRWEM
Trigger: CATTTCCCACCTGCCAGTTCACCAGGTGGAGGAGTT...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTCCTTTTGGCGCCTCTaGTTCACCCTTTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRSFWRL*FTLFSA
Trigger: GGCTGAGAAAAGGGTGAAGCAGAGGCGCCAAAAGGA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGACGGTGTTGTACATGTaGAGTGTGAGCACCTGCTGT +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWTVLYM*SVSTCC
Trigger: ACAGCAGGTGCTCACACTGCACATGTACAACACCGT...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGACACCTCTGGATGGTaGGAACATCCTGGTCCCTGC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDDTSGW*EHPGPC
Trigger: GCAGGGACCAGGATGTTCGCACCATCCAGAGGTGTC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTTAGTGACCTGCTTCTaGTTCACCAAATGCCGGTTT +
Preference number: 4 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYLVTCF*FTKCRF
Trigger: AAACCGGCATTTGGTGAAGCAGAAGCAGGTCACTAA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGATACAGGGCCTCGCTaGGCAGACTGTGCATCTCTC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDDTGPR*ADCASL
Trigger: GAGAGATGCACAGTCTGCGCAGCGAGGCCCTGTATC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGACTGTAGTGTCTCCTaGAGCTTGGTGACCAGGGCG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDDCSVS*SLVTRA
Trigger: CGCCCTGGTCACCAAGCTGCAGGAGACACTACAGTC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACTCCAGCAGTTCAGCATaGCCCCACTCCCTCAGGACA +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDSSSSA*PHSLRT
Trigger: TGTCCTGAGGGAGTGGGGCCATGCTGAACTGCTGGA...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTAGGGCTTGCTTCTGCTaGTCAACTTCCTTTTGGCGC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRRACFC*STSFWR
Trigger: GCGCCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTAAGAGCAGCTGGGGCTaGAAGCCTTCTTCCATCATC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRKSSWG*KPSSII
Trigger: GATGATGGAAGAAGGCTTCCAGCCCCAGCTGCTCTT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCCATCCTGGTGAACTaGCAGGTGGGAAATGTAGGC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMAILVN*QVGNVG
Trigger: GCCTACATTTCCCACCTGCCAGTTCACCAGGATGGC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR TCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCAGCATCCTTCAGCATaGGGAACACATAGACCAGCT +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRQHPSA*GTHRPA
Trigger: AGCTGGTCTATGTGTTCCTCATGCTGAAGGATGCTG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTAGCTCCTTCTTGAGCTaGAGAAGCCACCAAAAGTCC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRSSFLS*RSHQKS
Trigger: GGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGTCCTTTTGGCGCCTCTaGTTCACCCTTTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMSFWRL*FTLFSA
Trigger: GGCTGAGAAAAGGGTGAAGCAGAGGCGCCAAAAGGA...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGAACCTGCATCAGTATaGTCACAAACTCCCCTTCGC +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWREPASV*SQTPLR
Trigger: GCGAAGGGGAGTTTGTGAGCATACTGATGCAGGTTC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCAAGGGGTTGTCTaGAGAGTCCAAGATCTCCTC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWRQGVV*RVQDLL
Trigger: GAGGAGATCTTGGACTCTGCAGACAACCCCTTGACG...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCGTCAAGGGGTTGTCTaGAGAGTCCAAGATCTCCTC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMRQGVV*RVQDLL
Trigger: GAGGAGATCTTGGACTCTGCAGACAACCCCTTGACG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGGGGAAGCCATTTTTCTaGTTCAGAGTGTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWGKPFF*FRVLGF
Trigger: GAAGCCCAACACTCTGAAGCAGAAAAATGGCTTCCC...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGAGGGCTTGCTTCTGCTaGTCAACTTCCTTTTGGCGC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMRACFC*STSFWR
Trigger: GCGCCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCT...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACTGTTCCCTTCTTGCTTaGCTGCAGGTAGCCAGCCAG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDCSLLA*LQVASQ
Trigger: CTGGCTGGCTACCTGCAGCCAAGCAAGAAGGGAACA...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTTTCCTCTGAGTTCGTaGGTGTTCCCTTCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWFPLSS*VFPSCL
Trigger: CAAGCAAGAAGGGAACACCCACGAACTCAGAGGAAA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACATAGGAGCACAGGTCTaGGGAGAGGCCAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDIGAQV*GEASIL
Trigger: AAGGATGCTGGCCTCTCCCCAGACCTGTGCTCCTAT...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCTCCTTGGACATTACTaGAGCCTTCTCCACCGACTG +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMLLGHY*SLLHRL
Trigger: CAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTGGCACGCATTAGTTTaGTGGAGCTCAGCAAGTAGG +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRWHALV*WSSASR
Trigger: CCTACTTGCTGAGCTCCACCAAACTAATGCGTGCCA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCTTCTTCAGGAACTTaGCCAGGTCTTCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMASSGT*PGLPGW
Trigger: CCATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGAGCTCCTTCTTGAGCTaGAGAAGCCACCAAAAGTCC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWSSFLS*RSHQKS
Trigger: GGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCT...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGTGAGGGCTTGCTTCTaGTGGTCAACTTCCTTTTGG +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWVRACF*WSTSFW
Trigger: CCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCTCAC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTTAGTGACCTGCTTCTaGTTCACCAAATGCCGGTTT +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWLVTCF*FTKCRF
Trigger: AAACCGGCATTTGGTGAAGCAGAAGCAGGTCACTAA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACTGCTTCAGACACCTCTaGATGGTGCGAACATCCTGG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDCFRHL*MVRTSW
Trigger: CCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCA...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACACTGGACACAGACACTaGAGCTCAGCTCCACATGCA +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDTGHRH*SSAPHA
Trigger: TGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGT...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCTCCTTGGACATTACTaGAGCCTTCTCCACCGACTG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDLLGHY*SLLHRL
Trigger: CAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGTCAGGTTGATCAGGTaGATCTTAAGCCAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRVRLIR*ILSQSR
Trigger: TCTGGACTGGCTTAAGATCCACCTGATCAACCTGAC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CCA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTCTGCTTCAGAGTGTTaGGCTTCTGACTCTCATCTA +
Preference number: 4 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWSASEC*ASDSHL
Trigger: TAGATGAGAGTCAGAAGCCCAACACTCTGAAGCAGA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGCTTCTTCAGGAACTTaGCCAGGTCTTCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDASSGT*PGLPGW
Trigger: CCATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGGGAAGCCATTTTTCTaGTTCAGAGTGTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWGKPFF*FRVLGF
Trigger: GAAGCCCAACACTCTGAAGCAGAAAAATGGCTTCCC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGTTTCCTCTGAGTTCGTaGGTGTTCCCTTCTTGCTTG +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMFPLSS*VFPSCL
Trigger: CAAGCAAGAAGGGAACACCCACGAACTCAGAGGAAA...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGTCAGGTTGATCAGGTaGATCTTAAGCCAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWVRLIR*ILSQSR
Trigger: TCTGGACTGGCTTAAGATCCACCTGATCAACCTGAC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGTTAGTGACCTGCTTCTaGTTCACCAAATGCCGGTTT +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMLVTCF*FTKCRF
Trigger: AAACCGGCATTTGGTGAAGCAGAAGCAGGTCACTAA...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR GCA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGACATGGTTAGTGACCTaGTTCTGCTTCACCAAATGC +
Preference number: 4 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMTWLVT*FCFTKC
Trigger: GCATTTGGTGAAGCAGAAGCAGGTCACTAACCATGT...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGTCAGGTTGATCAGGTaGATCTTAAGCCAGTCCAGA +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDVRLIR*ILSQSR
Trigger: TCTGGACTGGCTTAAGATCCACCTGATCAACCTGAC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR GCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACACATGGTTAGTGACCTaGTTCTGCTTCACCAAATGC +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDTWLVT*FCFTKC
Trigger: GCATTTGGTGAAGCAGAAGCAGGTCACTAACCATGT...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CCA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACTCTGCTTCAGAGTGTTaGGCTTCTGACTCTCATCTA +
Preference number: 4 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDSASEC*ASDSHL
Trigger: TAGATGAGAGTCAGAAGCCCAACACTCTGAAGCAGA...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS CCA 90 bp GAGCTGCAGAAGCCACCAAAAGTCCCTTCCTCCGAAGGCGGGCGGTaGGGCCCAGGGGAGCGCAGAACCCGGCCAAGCCCGGCTGCGCTT +
Preference number: 5 (lower is better)
Translates to: ELQKPPKVPSSEGGR*GPGERRTRPSPAAL
Trigger: AAGCGCAGCCGGGCTTGGCCGGGTTCTGCGCTCCCCTGGGCCCCACCGCCCGCCTTCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp GGCAACGCGCCAGCTCCTTCCGCAGCTCAGACTTGTGCACTGGTGTaGAGCCGGGTGGCAGCTGATACCGGGCCGGCCGCGGTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: GNAPAPSAAQTCALV*SRVAADTGPAAVLL
Trigger: CAGAAGCACCGCGGCCGGCCCGGTATCAGCTGCCACCCGGCTCCACACCAGTGCACAAGTCTGAGCTGCGGAAGGAGCTGGCGCGTTGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp CTTGAGGCAACGCGCCAGCTCCTTCCGCAGCTCAGACTTGTGCACTaGTGTGGAGCCGGGTGGCAGCTGATACCGGGCCGGCCGCGGTGC +
Preference number: 5 (lower is better)
Translates to: LEATRQLLPQLRLVH*CGAGWQLIPGRPRC
Trigger: GCACCGCGGCCGGCCCGGTATCAGCTGCCACCCGGCTCCACACCAGTGCACAAGTCTGAGCTGCGGAAGGAGCTGGCGCGTTGCCTCAAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp GCCCACCTGGCGGTAGCTTCGGAAGGAATACACATGGTAAAGCACTaGGATGGAGCGCTGAGCACCCTGCCGGGCCGCCAGGCTGCGCGG +
Preference number: 5 (lower is better)
Translates to: AHLAVASEGIHMVKH*DGALSTLPGRQAAR
Trigger: CCGCGCAGCCTGGCGGCCCGGCAGGGTGCTCAGCGCTCCATCCCAGTGCTTTACCATGTGTATTCCTTCCGAAGCTACCGCCAGGTGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS TCA 90 bp GCCAGGGCCTCTGCCTCACGGGAGCTGAGCCTCCCCAGAGCAGCCTaGAGGGCCTGGGCCAGCTGCTTTTCCTCTGAGTTCGTGGGTGTT +
Preference number: 5 (lower is better)
Translates to: ARASASRELSLPRAA*RAWASCFSSEFVGV
Trigger: AACACCCACGAACTCAGAGGAAAAGCAGCTGGCCCAGGCCCTTCAGGCTGCTCTGGGGAGGCTCAGCTCCCGTGAGGCAGAGGCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp TGCTGTGCCAGCGACAGGCGATACAGGGCCTCGCTGCGCAGACTGTaGATCTCTCGAGCCACCTTGAGGCAACGCGCCAGCTCCTTCCGC +
Preference number: 5 (lower is better)
Translates to: CCASDRRYRASLRRL*ISRATLRQRASSFR
Trigger: GCGGAAGGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGATGCACAGTCTGCGCAGCGAGGCCCTGTATCGCCTGTCGCTGGCACAGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp TGCACCTTCTTCACCCTCATCTCAGGTGTGCCCTCTGCCCGGAGCTaGCGCACCCGAGCCTCCAGCACTTCCAGCAGTTCAGCATGGCCC +
Preference number: 5 (lower is better)
Translates to: CTFFTLISGVPSARS*RTRASSTSSSSAWP
Trigger: GGGCCATGCTGAACTGCTGGAAGTGCTGGAGGCTCGGGTGCGGCAGCTCCGGGCAGAGGGCACACCTGAGATGAGGGTGAAGAAGGTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp AGGCAGGGCGCCACCTGGGTGTCAGACGCCAGCAGCTGGAGGTACTaGGAGTACCGCTGCCCCAGCTTCTGCACATGGTTAGTGACCTGC +
Preference number: 5 (lower is better)
Translates to: RQGATWVSDASSWRY*EYRCPSFCTWLVTC
Trigger: GCAGGTCACTAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCTGGCGTCTGACACCCAGGTGGCGCCCTGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS CCA 90 bp TCCCGAGGAAGGCAGGGCGCCACCTGGGTGTCAGACGCCAGCAGCTaGAGGTACTGCGAGTACCGCTGCCCCAGCTTCTGCACATGGTTA +
Preference number: 5 (lower is better)
Translates to: SRGRQGATWVSDASS*RYCEYRCPSFCTWL
Trigger: TAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCTGGCGTCTGACACCCAGGTGGCGCCCTGCCTTCCTCGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS CCA 90 bp ACCCTCCTTGGCGTCCTGCTGGCGGAACTCCTCCACCTGGTGAACTaGCAGGTGGGAAATGTAGGCAGCAGGGTCTGGGGACCGGACTGC +
Preference number: 5 (lower is better)
Translates to: TLLGVLLAELLHLVN*QVGNVGSRVWGPDC
Trigger: GCAGTCCGGTCCCCAGACCCTGCTGCCTACATTTCCCACCTGCCAGTTCACCAGGTGGAGGAGTTCCGCCAGCAGGACGCCAAGGAGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp TGTGGGTGTGACAGTACACCAGGTTGGGTGGGTGAGCTGTGGGGTGGAGGGGCCTCTCTGAAGGAGCCCTaGCGGGCCCAGCCAAGCATC +
Preference number: 5 (lower is better)
Translates to: CGCDSTPGWVGELWGGGASLKEP*RAQPSI
Trigger: GATGCTTGGCTGGGCCCGCAAGGGCTCCTTCAGAGA...GGCCCCTCCACCCCACAGCTCACCCACCCAACCTGGTGTACTGTCACACCCACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS GCA 90 bp GGACATGTTGCTCACGGGGACTGGCAGCGGAGCTCCTTCTTGAGCTaGAGAAGCCACCAAAAGTCCCTTCCTCCGAAGGCGGGCGGTGGG +
Preference number: 5 (lower is better)
Translates to: GHVAHGDWQRSSFLS*RSHQKSLPPKAGGG
Trigger: CCCACCGCCCGCCTTCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGCAACATGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS TCA 90 bp CCTCAGGACATGTTGCTCACGGGGACTGGCAGCGGAGCTCCTTCTTaGGCTGCAGAAGCCACCAAAAGTCCCTTCCTCCGAAGGCGGGCG +
Preference number: 5 (lower is better)
Translates to: PQDMLLTGTGSGAPS*AAEATKSPFLRRRA
Trigger: CGCCCGCCTTCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGCAACATGTCCTGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp TCTGCTTCACCCTTTTCTCAGCCTCTAGCTTTTGCGCCCAGCGGCTaGTGTGGCCCTGTGGAGGCCGGTCCACCTGCACCTTCTTCACCC +
Preference number: 5 (lower is better)
Translates to: SASPFSQPLAFAPSG*CGPVEAGPPAPSSP
Trigger: GGGTGAAGAAGGTGCAGGTGGACCGGCCTCCACAGGGCCACAGCAGCCGCTGGGCGCAAAAGCTAGAGGCTGAGAAAAGGGTGAAGCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp TCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACCTTGCACGGACCAGGGCTGTaGTGCAGGGGCCTCCAGTGG +
Preference number: 5 (lower is better)
Translates to: STELVRVMLWRPPFTWTLHGPGL*CRGLQW
Trigger: CCACTGGAGGCCCCTGCACAACAGCCCTGGTCCGTG...CAAGGTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS TCA 90 bp CTCTCAGGAGCGCGGCCCGGTCCTCCTCTTCCAGGACCAGGTCAGTaGAGAGCAGCTGGGGCTGGAAGCCTTCTTCCATCATCTGCTTCA +
Preference number: 5 (lower is better)
Translates to: LSGARPGPPLPGPGQ*RAAGAGSLLPSSAS
Trigger: TGAAGCAGATGATGGAAGAAGGCTTCCAGCCCCAGCTGCTCTTCACTGACCTGGTCCTGGAAGAGGAGGACCGGGCCGCGCTCCTGAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp TTCACCCTTTTCTCAGCCTCTAGCTTTTGCGCCCAGCGGCTGCTGTaGCCCTGTGGAGGCCGGTCCACCTGCACCTTCTTCACCCTCATC +
Preference number: 5 (lower is better)
Translates to: FTLFSASSFCAQRLL*PCGGRSTCTFFTLI
Trigger: GATGAGGGTGAAGAAGGTGCAGGTGGACCGGCCTCCACAGGGCCACAGCAGCCGCTGGGCGCAAAAGCTAGAGGCTGAGAAAAGGGTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp AGCACTTCCAGCAGTTCAGCATGGCCCCACTCCCTCAGGACATGTTaGTCACGGGGACTGGCAGCGGAGCTCCTTCTTGAGCTGCAGAAG +
Preference number: 5 (lower is better)
Translates to: STSSSSAWPHSLRTC*SRGLAAELLLELQK
Trigger: CTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGCAACATGTCCTGAGGGAGTGGGGCCATGCTGAACTGCTGGAAGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp GAGCAGCCTGAAGGGCCTGGGCCAGCTGCTTTTCCTCTGAGTTCGTaGGTGTTCCCTTCTTGCTTGGCTGCAGGTAGCCAGCCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: EQPEGPGPAAFPLSS*VFPSCLAAGSQPAS
Trigger: AGAAGCTGGCTGGCTACCTGCAGCCAAGCAAGAAGGGAACACCCACGAACTCAGAGGAAAAGCAGCTGGCCCAGGCCCTTCAGGCTGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp GGCCTGCAGGGTCTTCCGCGCCTCAATGACCTCCTTGGACATTACTaGAGCCTTCTCCACCGACTGGACACAGACACTGGAGCTCAGCTC +
Preference number: 5 (lower is better)
Translates to: GLQGLPRLNDLLGHY*SLLHRLDTDTGAQL
Trigger: GAGCTGAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAGGTCATTGAGGCGCGGAAGACCCTGCAGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp GACGCTGGTGCTGTGTGGTACCCTCCGTGGCACGCATTAGTTTGGTaGAGCTCAGCAAGTAGGCACCAGAATGCAGCGACGTCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: DAGAVWYPPWHALVW*SSASRHQNAATSRA
Trigger: TGCCCTGGACGTCGCTGCATTCTGGTGCCTACTTGCTGAGCTCCACCAAACTAATGCGTGCCACGGAGGGTACCACACAGCACCAGCGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp TTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGCTGGGCAGGAGGGCATaGCTCCAGCAGACGCTGGTG +
Preference number: 5 (lower is better)
Translates to: FYLDLGLAVIGLYDGDAQLGRRA*LQQTLV
Trigger: CACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAG...CTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp CTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGGGGCGTGACCCAAGCGAGTCTCCCTTCTaGAGGCCAGTCAGGTTGATC +
Preference number: 5 (lower is better)
Translates to: LGLAVIGLYDGDAQGRDPSESPF*RPVRLI
Trigger: GATCAACCTGACTGGCCTCAAGAAGGGAGACTCGCT...TGGGTCACGCCCCTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS CCA 90 bp TGGCCAGTGCAGACGCAGCACTCAAAGAAAGCCAGGAACTTCTGCTaGAGGACCAGGATCTGCGCCTCCACCGCCTTGGCTTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: WPVQTQHSKKARNFC*RTRICASTALAFFL
Trigger: CAGGAAGAAAGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCAGCAGAAGTTCCTGGCTTTCTTTGAGTGCTGCGTCTGCACTGGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp TTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGGATGCCCAGATCTCTCGAGCCACCTaGAGGCAACGCGCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: FYLDLGLAVIGLYDGDAQISRAT*RQRASS
Trigger: GGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGAT...CTGGGCATCCCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp CTCTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGCGGCCCGTCAAGGGGTaGTCTGCAGAGTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: LSSTELVRVMLWRPPFTWRPVKG*SAESKI
Trigger: GATCTTGGACTCTGCAGACAACCCCTTGACGGGCCG...CCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS GCA 90 bp ACTTGGCCAGTGCAGACGCAGCACTCAAAGAAAGCCAGGAACTTCTaGTGGAGGACCAGGATCTGCGCCTCCACCGCCTTGGCTTTCTTC +
Preference number: 5 (lower is better)
Translates to: TWPVQTQHSKKARNF*WRTRICASTALAFF
Trigger: GAAGAAAGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCAGCAGAAGTTCCTGGCTTTCTTTGAGTGCTGCGTCTGCACTGGCCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp AACTGGATAAGGGGCTCACCCTGCGCAGGCAGGACCTTCAGAACCTaGATCAGTATGCTCACAAACTCCCCTTCGCTCAGCAGGCACAGG +
Preference number: 5 (lower is better)
Translates to: NWIRGSPCAGRTFRT*ISMLTNSPSLSRHR
Trigger: CCTGTGCCTGCTGAGCGAAGGGGAGTTTGTGAGCATACTGATGCAGGTTCTGAAGGTCCTGCCTGCGCAGGGTGAGCCCCTTATCCAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 90 bp CACCCACACTGTCTCGGCCTAGTGCGGCGTAATGCTGTAAGCCATTaGAGGAGCCATCCTGGTGAACTGGCAGGTGGGAAATGTAGGCAG +
Preference number: 5 (lower is better)
Translates to: HPHCLGLVRRNAVSH*RSHPGELAGGKCRQ
Trigger: CTGCCTACATTTCCCACCTGCCAGTTCACCAGGATGGCTCCTGCAATGGCTTACAGCATTACGCCGCACTAGGCCGAGACAGTGTGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS CCA 90 bp CGGTCCTCCTCTTCCAGGACCAGGTCAGTGAAGAGCAGCTGGGGCTaGAAGCCTTCTTCCATCATCTGCTTCAGACACCTCTGGATGGTG +
Preference number: 5 (lower is better)
Translates to: RSSSSRTRSVKSSWG*KPSSIICFRHLWMV
Trigger: CACCATCCAGAGGTGTCTGAAGCAGATGATGGAAGAAGGCTTCCAGCCCCAGCTGCTCTTCACTGACCTGGTCCTGGAAGAGGAGGACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GAGGCCACCTTTTACCTGGACCTTGGACTCGCGGTGATAGGGCTGTATGATGGGCAGCGGAGCTCCTTCTaGAGCTGCAGAAGCCACCAA +
Preference number: 5 (lower is better)
Translates to: EATFYLDLGLAVIGLYDGQRSSF*SCRSHQ
Trigger: TTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTG...CCCATCATACAGCCCTATCACCGCGAGTCCAAGGTCCAGGTAAAAGGTGGCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS CCA 90 bp CTTGCTATATATGTCCTTGAGCAGCGTGGATGTGTTAACTGGGCTTaGGGCCTGTGGCGGTGGACGAAAGGCAGGCTCAGCCTTGACCAC +
Preference number: 5 (lower is better)
Translates to: LAIYVLEQRGCVNWA*GLWRWTKGRLSLDH
Trigger: GTGGTCAAGGCTGAGCCTGCCTTTCGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACATCCACGCTGCTCAAGGACATATATAGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 90 bp CCTTGGACATTACTGGAGCCTTCTCCACCGACTGGACACAGACACTaGAGCTCAGCTCCACATGCAGCTGCTGGTAGAAGAGGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: PWTLLEPSPPTGHRH*SSAPHAAAGRRGPA
Trigger: TGCAGGACCTCTTCTACCAGCAGCTGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp CTCATCTACCGAGCTGGTGAGGGTGATGCTCTGGAGGCCACCTTTTACCTGGACGCCTCAATGACCTCCTaGGACATTACTGGAGCCTTC +
Preference number: 5 (lower is better)
Translates to: LIYRAGEGDALEATFYLDASMTS*DITGAF
Trigger: GAAGGCTCCAGTAATGTCCAAGGAGGTCATTGAGGC...GTCCAGGTAAAAGGTGGCCTCCAGAGCATCACCCTCACCAGCTCGGTAGATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCACGGACCAGGGCTGTaGTGCAGGGGCCTCCAGTGG +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYHGPGL*CRGLQW
Trigger: CCACTGGAGGCCCCTGCACAACAGCCCTGGTCCGTG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020580.13
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCTGGGCAGGAGGGCATaGCTCCAGCAGACGCTGGTG +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYLGRRA*LQQTLV
Trigger: CACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GCGCACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTCGGCCCGTCAAGGGGTaGTCTGCAGAGTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: AHRQKVAAGIGRHKLSFIRPVKG*SAESKI
Trigger: GATCTTGGACTCTGCAGACAACCCCTTGACGGGCCG...AATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCTCCCTCAGGACATGTaGCTCACGGGGACTGGCAGC +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYLPQDM*LTGTGS
Trigger: GCTGCCAGTCCCCGTGAGCAACATGTCCTGAGGGAG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACTCTCTGAAGGAGCCCTaGCGGGCCCAGCCAAGCATC +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSLKEP*RAQPSI
Trigger: GATGCTTGGCTGGGCCCGCAAGGGCTCCTTCAGAGA...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACATCTCTCGAGCCACCTaGAGGCAACGCGCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYISRAT*RQRASS
Trigger: GGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGAT...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACCTCCCTGTACACATCTaGGGGCAGGTCGGACGGCGT +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYLPVHI*GQVGRR
Trigger: ACGCCGTCCGACCTGCCCCAAGATGTGTACAGGGAG...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGCTGGGCAGGAGGGCATaGCTCCAGCAGACGCTGGTG +
Preference number: 5 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWLGRRA*LQQTLV
Trigger: CACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAG...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGAGTGTCTCCTGCAGCTaGGTGACCAGGGCGCGCTCC +
Preference number: 5 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWSVSCS*VTRARS
Trigger: GGAGCGCGCCCTGGTCACCAAGCTGCAGGAGACACT...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTTGCGCCTCCACCGCCTaGGCTTTCTTCCTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRCASTA*AFFLAR
Trigger: CCTGGCCAGGAAGAAAGCCAAGGCGGTGGAGGCGCA...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGTGAGCGAGGGGCACTaGGCCAGTGCAGACGCAGCA +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRVSEGH*ASADAA
Trigger: TGCTGCGTCTGCACTGGCCAAGTGCCCCTCGCTCAC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGTCTCTGAAGGAGCCCTaGCGGGCCCAGCCAAGCATC +
Preference number: 5 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWSLKEP*RAQPSI
Trigger: GATGCTTGGCTGGGCCCGCAAGGGCTCCTTCAGAGA...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGTGCGCCTCCACCGCCTaGGCTTTCTTCCTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMCASTA*AFFLAR
Trigger: CCTGGCCAGGAAGAAAGCCAAGGCGGTGGAGGCGCA...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACAGCGAGTCTCCCTTCTaGAGGCCAGTCAGGTTGATC +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYSESPF*RPVRLI
Trigger: GATCAACCTGACTGGCCTCAAGAAGGGAGACTCGCT...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCTCCCTGTACACATCTaGGGGCAGGTCGGACGGCGT +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRLPVHI*GQVGRR
Trigger: ACGCCGTCCGACCTGCCCCAAGATGTGTACAGGGAG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGAGTGTCTCCTGCAGCTaGGTGACCAGGGCGCGCTCC +
Preference number: 5 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMSVSCS*VTRARS
Trigger: GGAGCGCGCCCTGGTCACCAAGCTGCAGGAGACACT...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACTGCGCCTCCACCGCCTaGGCTTTCTTCCTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDCASTA*AFFLAR
Trigger: CCTGGCCAGGAAGAAAGCCAAGGCGGTGGAGGCGCA...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGTGAGCGAGGGGCACTaGGCCAGTGCAGACGCAGCA +
Preference number: 5 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDVSEGH*ASADAA
Trigger: TGCTGCGTCTGCACTGGCCAAGTGCCCCTCGCTCAC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACCGCCAGAAAGTGGCGGCTGGCATAGGTAGACACAAACTTTCATTTATTTACGCCTCAATGACCTCCTaGGACATTACTGGAGCCTTC +
Preference number: 5 (lower is better)
Translates to: HRQKVAAGIGRHKLSFIYASMTS*DITGAF
Trigger: GAAGGCTCCAGTAATGTCCAAGGAGGTCATTGAGGC...GTAAATAAATGAAAGTTTGTGTCTACCTATGCCAGCCGCCACTTTCTGGCGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCGGCCCGTCAAGGGGTaGTCTGCAGAGTCCAAGATC +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRRPVKG*SAESKI
Trigger: GATCTTGGACTCTGCAGACAACCCCTTGACGGGCCG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCTCCCTCAGGACATGTaGCTCACGGGGACTGGCAGC +
Preference number: 5 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDLPQDM*LTGTGS
Trigger: GCTGCCAGTCCCCGTGAGCAACATGTCCTGAGGGAG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACATCTCTCGAGCCACCTaGAGGCAACGCGCCAGCTCC +
Preference number: 5 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDISRAT*RQRASS
Trigger: GGAGCTGGCGCGTTGCCTCAAGGTGGCTCGAGAGAT...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGCGCTTCTTCAGGAACTaGGCCAGGTCTTCCAGGATG +
Preference number: 5 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWRFFRN*ARSSRM
Trigger: CATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGCG...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp CACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGGGAGGACTTTAGGGACTaGATGCTGGACACGGAGCAG +
Preference number: 5 (lower is better)
Translates to: HKLSFIYIMHRFRDRMAWEDFRD*MLDTEQ
Trigger: CTGCTCCGTGTCCAGCATCAAGTCCCTAAAGTCCTC...CCACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCAGCGGAGCTCCTTCTaGAGCTGCAGAAGCCACCAA +
Preference number: 5 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMQRSSF*SCRSHQ
Trigger: TTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGTGTTCCCTTCTTGCTaGGCTGCAGGTAGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMVFPSC*AAGSQP
Trigger: TGGCTGGCTACCTGCAGCCAAGCAAGAAGGGAACAC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGTGTTCCCTTCTTGCTaGGCTGCAGGTAGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWVFPSC*AAGSQP
Trigger: TGGCTGGCTACCTGCAGCCAAGCAAGAAGGGAACAC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTAGCGAGTCTCCCTTCTaGAGGCCAGTCAGGTTGATC +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRSESPF*RPVRLI
Trigger: GATCAACCTGACTGGCCTCAAGAAGGGAGACTCGCT...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTCGCTTCTTCAGGAACTaGGCCAGGTCTTCCAGGATG +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRRFFRN*ARSSRM
Trigger: CATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGCG...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCAGCGGAGCTCCTTCTaGAGCTGCAGAAGCCACCAA +
Preference number: 5 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDQRSSF*SCRSHQ
Trigger: TTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTG...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GGCATAGGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACGTGTTCCCTTCTTGCTaGGCTGCAGGTAGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: GIGRHKLSFIYIMHRFRDVFPSC*AAGSQP
Trigger: TGGCTGGCTACCTGCAGCCAAGCAAGAAGGGAACAC...GTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACCTATGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS-3UTR CAA 90 bp GACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGCGTGCCTCAATGACCTCCTaGGACATTACTGGAGCCTTC +
Preference number: 5 (lower is better)
Translates to: DTNFHLFTLCTGLGTAWRASMTS*DITGAF
Trigger: GAAGGCTCCAGTAATGTCCAAGGAGGTCATTGAGGC...ACGCCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGAGCGAGTCTCCCTTCTaGAGGCCAGTCAGGTTGATC +
Preference number: 5 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWSESPF*RPVRLI
Trigger: GATCAACCTGACTGGCCTCAAGAAGGGAGACTCGCT...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS-3UTR CAA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGCGCTTCTTCAGGAACTaGGCCAGGTCTTCCAGGATG +
Preference number: 5 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMRFFRN*ARSSRM
Trigger: CATCCTGGAAGACCTGGCCAAGTTCCTGAAGAAGCG...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGGAGGACTTTAGGGACTaGATGCTGGACACGGAGCAG +
Preference number: 5 (lower is better)
Translates to: VDTNFHLFTLCTGLGTAWEDFRD*MLDTEQ
Trigger: CTGCTCCGTGTCCAGCATCAAGTCCCTAAAGTCCTC...CCATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS-3UTR CAA 90 bp GGTAGACACAAACTTTCATTTATTTACATTATGCACAGGTTTAGGGACCGCATGGAGGACTTTAGGGACTaGATGCTGGACACGGAGCAG +
Preference number: 5 (lower is better)
Translates to: GRHKLSFIYIMHRFRDRMEDFRD*MLDTEQ
Trigger: CTGCTCCGTGTCCAGCATCAAGTCCCTAAAGTCCTC...CATGCGGTCCCTAAACCTGTGCATAATGTAAATAAATGAAAGTTTGTGTCTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
CDS CAA 72 bp GGGGCCTGTGGCGGTGGACGAAAGGCAGGCTCAGCCTaGACCACTGCTCTCAGGAGCGCGGCCCGGTCCTCC +
Preference number: 6 (lower is better)
Translates to: GACGGGRKAGSA*TTALRSAARSS
Trigger: GGAGGACCGGGCCGCGCTCCTGAGAGCAGTGGTCAAGGCTGAGCCTGCCTTTCGTCCACCGCCACAGGCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS TCA 72 bp GGGCCTGTGGCGGTGGACGAAAGGCAGGCTCAGCCTTaGCCACTGCTCTCAGGAGCGCGGCCCGGTCCTCCT +
Preference number: 6 (lower is better)
Translates to: GPVAVDERQAQP*PLLSGARPGPP
Trigger: AGGAGGACCGGGCCGCGCTCCTGAGAGCAGTGGTCAAGGCTGAGCCTGCCTTTCGTCCACCGCCACAGGCCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp CCAGCTCCTTCCGCAGCTCAGACTTGTGCACTGGTGTaGAGCCGGGTGGCAGCTGATACCGGGCCGGCCGCG +
Preference number: 6 (lower is better)
Translates to: PAPSAAQTCALV*SRVAADTGPAA
Trigger: CGCGGCCGGCCCGGTATCAGCTGCCACCCGGCTCCACACCAGTGCACAAGTCTGAGCTGCGGAAGGAGCTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CAA 90 bp CTGTGTGAGCGCATCCAGGGGGCCGTGCAGCTGGGCAGGAGGGCATaGCTCCAGCAGACGCTGGTGCTGTGTGGTACCCTCCGTGGCACG +
Preference number: 6 (lower is better)
Translates to: LCERIQGAVQLGRRA*LQQTLVLCGTLRGT
Trigger: CGTGCCACGGAGGGTACCACACAGCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGCGCTCACACAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp GCATCCAGGGGGCCGTGCAGCTGGGCAGGAGGGCATTaGTCCAGCAGACGCTGGTGCTGTGTGGTACCCTCC +
Preference number: 6 (lower is better)
Translates to: ASRGPCSWAGGH*SSRRWCCVVPS
Trigger: GGAGGGTACCACACAGCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CAA 72 bp CGCATCCAGGGGGCCGTGCAGCTGGGCAGGAGGGCATaGCTCCAGCAGACGCTGGTGCTGTGTGGTACCCTC +
Preference number: 6 (lower is better)
Translates to: RIQGAVQLGRRA*LQQTLVLCGTL
Trigger: GAGGGTACCACACAGCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAGCTGCACGGCCCCCTGGATGCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TCTGCTGGAGGACCAGGATCTGCGCCTCCACCGCCTTaGCTTTCTTCCTGGCCAGGGCCTCTGCCTCACGGG +
Preference number: 6 (lower is better)
Translates to: SAGGPGSAPPPP*LSSWPGPLPHG
Trigger: CCCGTGAGGCAGAGGCCCTGGCCAGGAAGAAAGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCAGCAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp CAGCGGCTGCTGTGGCCCTGTGGAGGCCGGTCCACCTaGACCTTCTTCACCCTCATCTCAGGTGTGCCCTCT +
Preference number: 6 (lower is better)
Translates to: QRLLWPCGGRST*TFFTLISGVPS
Trigger: AGAGGGCACACCTGAGATGAGGGTGAAGAAGGTGCAGGTGGACCGGCCTCCACAGGGCCACAGCAGCCGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp CCCTTTTCTCAGCCTCTAGCTTTTGCGCCCAGCGGCTaGTGTGGCCCTGTGGAGGCCGGTCCACCTGCACCT +
Preference number: 6 (lower is better)
Translates to: PFSQPLAFAPSG*CGPVEAGPPAP
Trigger: AGGTGCAGGTGGACCGGCCTCCACAGGGCCACAGCAGCCGCTGGGCGCAAAAGCTAGAGGCTGAGAAAAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp CGCCTCTGCTTCACCCTTTTCTCAGCCTCTAGCTTTTaGGCCCAGCGGCTGCTGTGGCCCTGTGGAGGCCGG +
Preference number: 6 (lower is better)
Translates to: RLCFTLFSASSF*AQRLLWPCGGR
Trigger: CCGGCCTCCACAGGGCCACAGCAGCCGCTGGGCGCAAAAGCTAGAGGCTGAGAAAAGGGTGAAGCAGAGGCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CAA 72 bp TTCTGCTGGAGGACCAGGATCTGCGCCTCCACCGCCTaGGCTTTCTTCCTGGCCAGGGCCTCTGCCTCACGG +
Preference number: 6 (lower is better)
Translates to: FCWRTRICASTA*AFFLARASASR
Trigger: CCGTGAGGCAGAGGCCCTGGCCAGGAAGAAAGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCAGCAGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp CGCACCCGAGCCTCCAGCACTTCCAGCAGTTCAGCATaGCCCCACTCCCTCAGGACATGTTGCTCACGGGGA +
Preference number: 6 (lower is better)
Translates to: RTRASSTSSSSA*PHSLRTCCSRG
Trigger: TCCCCGTGAGCAACATGTCCTGAGGGAGTGGGGCCATGCTGAACTGCTGGAAGTGCTGGAGGCTCGGGTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TTCTCAGCCTCTAGCTTTTGCGCCCAGCGGCTGCTGTaGCCCTGTGGAGGCCGGTCCACCTGCACCTTCTTC +
Preference number: 6 (lower is better)
Translates to: FSASSFCAQRLL*PCGGRSTCTFF
Trigger: GAAGAAGGTGCAGGTGGACCGGCCTCCACAGGGCCACAGCAGCCGCTGGGCGCAAAAGCTAGAGGCTGAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp GGCGTCCTGCTGGCGGAACTCCTCCACCTGGTGAACTaGCAGGTGGGAAATGTAGGCAGCAGGGTCTGGGGA +
Preference number: 6 (lower is better)
Translates to: GVLLAELLHLVN*QVGNVGSRVWG
Trigger: TCCCCAGACCCTGCTGCCTACATTTCCCACCTGCCAGTTCACCAGGTGGAGGAGTTCCGCCAGCAGGACGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161662.8
CDS CAA 90 bp CCCTCAGGACATGTTGCTCACGGGGACTGGCAGCGGAGCTCCTTCTaGAGCTGCAGAAGCCACCAAAAGTCCCTTCCTCCGAAGGCGGGC +
Preference number: 6 (lower is better)
Translates to: PSGHVAHGDWQRSSF*SCRSHQKSLPPKAG
Trigger: GCCCGCCTTCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGCAACATGTCCTGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp GCTCACGGGGACTGGCAGCGGAGCTCCTTCTTGAGCTaGAGAAGCCACCAAAAGTCCCTTCCTCCGAAGGCG +
Preference number: 6 (lower is better)
Translates to: AHGDWQRSSFLS*RSHQKSLPPKA
Trigger: CGCCTTCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp GCCACCTGGGTGTCAGACGCCAGCAGCTGGAGGTACTaGGAGTACCGCTGCCCCAGCTTCTGCACATGGTTA +
Preference number: 6 (lower is better)
Translates to: ATWVSDASSWRY*EYRCPSFCTWL
Trigger: TAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCTGGCGTCTGACACCCAGGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS GCA 72 bp CCCACCTGGGTGTCAGACGCCAGCAGCTGGAGGTACTaGGAGTACCGCTGCCCCAGCTTCTGCACATGGTTA +
Preference number: 6 (lower is better)
Translates to: PTWVSDASSWRY*EYRCPSFCTWL
Trigger: TAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCTGGCGTCTGACACCCAGGTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159016.8
CDS CCA 72 bp GAGCAGCGTGGATGTGTTAACTGGGCTTGGGGCCTGTaGCGGTGGACGAAAGGCAGGCTCAGCCTTGACCAC +
Preference number: 6 (lower is better)
Translates to: EQRGCVNWAWGL*RWTKGRLSLDH
Trigger: GTGGTCAAGGCTGAGCCTGCCTTTCGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACATCCACGCTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp GCGGTAGCTTCGGAAGGAATACACATGGTAAAGCACTaGGATGGAGCGCTGAGCACCCTGCCGGGCCGCCAG +
Preference number: 6 (lower is better)
Translates to: AVASEGIHMVKH*DGALSTLPGRQ
Trigger: CTGGCGGCCCGGCAGGGTGCTCAGCGCTCCATCCCAGTGCTTTACCATGTGTATTCCTTCCGAAGCTACCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000162694.8
CDS CCA 72 bp TGCAGCTGGGCAGGAGGGCATTGCTCCAGCAGACGCTaGTGCTGTGTGGTACCCTCCGTGGCACGCATTAGT +
Preference number: 6 (lower is better)
Translates to: CSWAGGHCSSRR*CCVVPSVARIS
Trigger: ACTAATGCGTGCCACGGAGGGTACCACACAGCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAGCTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TTAAGGATGCCCACCTGGGTGTCAGACGCCAGCAGCTaGAGGTACTGCGAGTACCGCTGCCCCAGCTTCTGC +
Preference number: 6 (lower is better)
Translates to: LRMPTWVSDASS*RYCEYRCPSFC
Trigger: GCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCTGCTGGCGTCTGACACCCAGGTGGGCATCCTTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159016.8
CDS CCA 72 bp CTGAGGCAGCACCCACACTGTCTCGGCCTGGTGAACTaGCAGGTGGGAAATGTAGGCAGCAGGGTCTGGGGA +
Preference number: 6 (lower is better)
Translates to: LRQHPHCLGLVN*QVGNVGSRVWG
Trigger: TCCCCAGACCCTGCTGCCTACATTTCCCACCTGCCAGTTCACCAGGCCGAGACAGTGTGGGTGCTGCCTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000162694.8
CDS GCA 72 bp AGCTGGGCAGGAGGGCATTGCTCCAGCAGACGCTGGTaGTGTGTGGTACCCTCCGTGGCACGCATTAGTTTG +
Preference number: 6 (lower is better)
Translates to: SWAGGHCSSRRW*CVVPSVARISL
Trigger: CAAACTAATGCGTGCCACGGAGGGTACCACACAGCACCAGCGTCTGCTGGAGCAATGCCCTCCTGCCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp CGTGGATGTGTTAACTGGGCTTGGGGCCTGTGGCGGTaGACGAAAGGCAGGCTCAGCCTTGACCACTGCTCT +
Preference number: 6 (lower is better)
Translates to: RGCVNWAWGLWR*TKGRLSLDHCS
Trigger: AGAGCAGTGGTCAAGGCTGAGCCTGCCTTTCGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACATCCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp TCTGGATGGTGCGAACATCCTGGTCCCTGCGTCCCATaGACTGGAGTGCAGCTGCATAGGAGCACAGGTCTG +
Preference number: 6 (lower is better)
Translates to: SGWCEHPGPCVP*TGVQLHRSTGL
Trigger: CAGACCTGTGCTCCTATGCAGCTGCACTCCAGTGCATGGGACGCAGGGACCAGGATGTTCGCACCATCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp AGGGGCTCACCCTGCGCAGGCAGGACCTTCAGAACCTaGATCAGTATGCTCACAAACTCCCCTTCGCTCAGC +
Preference number: 6 (lower is better)
Translates to: RGSPCAGRTFRT*ISMLTNSPSLS
Trigger: GCTGAGCGAAGGGGAGTTTGTGAGCATACTGATGCAGGTTCTGAAGGTCCTGCCTGCGCAGGGTGAGCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp CAGACGCAGCACTCAAAGAAAGCCAGGAACTTCTGCTaGAGGACCAGGATCTGCGCCTCCACCGCCTTGGCT +
Preference number: 6 (lower is better)
Translates to: QTQHSKKARNFC*RTRICASTALA
Trigger: AGCCAAGGCGGTGGAGGCGCAGATCCTGGTCCTCCAGCAGAAGTTCCTGGCTTTCTTTGAGTGCTGCGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TCCTCCACCTGTGTTGCCACCTCCCTGTACACATCTTaGGGCAGGTCGGACGGCGTTAGGTTGACTGAGGCA +
Preference number: 6 (lower is better)
Translates to: SSTCVATSLYTS*GRSDGVRLTEA
Trigger: TGCCTCAGTCAACCTAACGCCGTCCGACCTGCCCCAAGATGTGTACAGGGAGGTGGCAACACAGGTGGAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS CAA 72 bp CATGTTGCTCACGGGGACTGGCAGCGGAGCTCCTTCTaGAGCTGCAGAAGCCACCAAAAGTCCCTTCCTCCG +
Preference number: 6 (lower is better)
Translates to: HVAHGDWQRSSF*SCRSHQKSLPP
Trigger: CGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGCAACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CAA 72 bp AGGGCCTGCAGGGTCTTCCGCGCCTCAATGACCTCCTaGGACATTACTGGAGCCTTCTCCACCGACTGGACA +
Preference number: 6 (lower is better)
Translates to: RACRVFRASMTS*DITGAFSTDWT
Trigger: TGTCCAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAGGTCATTGAGGCGCGGAAGACCCTGCAGGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS TCA 72 bp ATGTTGCTCACGGGGACTGGCAGCGGAGCTCCTTCTTaGGCTGCAGAAGCCACCAAAAGTCCCTTCCTCCGA +
Preference number: 6 (lower is better)
Translates to: MLLTGTGSGAPS*AAEATKSPFLR
Trigger: TCGGAGGAAGGGACTTTTGGTGGCTTCTGCAGCTCAAGAAGGAGCTCCGCTGCCAGTCCCCGTGAGCAACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp CCCAGGTTATGGGCCAACTGGATAAGGGGCTCACCCTaGGCAGGCAGGACCTTCAGAACCTGCATCAGTATG +
Preference number: 6 (lower is better)
Translates to: PRLWANWIRGSP*AGRTFRTCISM
Trigger: CATACTGATGCAGGTTCTGAAGGTCCTGCCTGCGCAGGGTGAGCCCCTTATCCAGTTGGCCCATAACCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp GCTGTGTGGTACCCTCCGTGGCACGCATTAGTTTGGTaGAGCTCAGCAAGTAGGCACCAGAATGCAGCGACG +
Preference number: 6 (lower is better)
Translates to: AVWYPPWHALVW*SSASRHQNAAT
Trigger: CGTCGCTGCATTCTGGTGCCTACTTGCTGAGCTCCACCAAACTAATGCGTGCCACGGAGGGTACCACACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp TTCCATCCACCACTTCCGGCCCGTCAAGGGGTTGTCTaGAGAGTCCAAGATCTCCTCCATGACCTCATCTGC +
Preference number: 6 (lower is better)
Translates to: FHPPLPARQGVV*RVQDLLHDLIC
Trigger: GCAGATGAGGTCATGGAGGAGATCTTGGACTCTGCAGACAACCCCTTGACGGGCCGGAAGTGGTGGATGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS GCA 72 bp TGTCTCGGCCTAGTGCGGCGTAATGCTGTAAGCCATTaGAGGAGCCATCCTGGTGAACTGGCAGGTGGGAAA +
Preference number: 6 (lower is better)
Translates to: CLGLVRRNAVSH*RSHPGELAGGK
Trigger: TTTCCCACCTGCCAGTTCACCAGGATGGCTCCTGCAATGGCTTACAGCATTACGCCGCACTAGGCCGAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
CDS CCA 72 bp GCTATATATGTCCTTGAGCAGCGTGGATGTGTTAACTaGGCTTGGGGCCTGTGGCGGTGGACGAAAGGCAGG +
Preference number: 6 (lower is better)
Translates to: AIYVLEQRGCVN*AWGLWRWTKGR
Trigger: CCTGCCTTTCGTCCACCGCCACAGGCCCCAAGCCCAGTTAACACATCCACGCTGCTCAAGGACATATATAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp ACCTCCTTGGACATTACTGGAGCCTTCTCCACCGACTaGACACAGACACTGGAGCTCAGCTCCACATGCAGC +
Preference number: 6 (lower is better)
Translates to: TSLDITGAFSTD*TQTLELSSTCS
Trigger: GCTGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAGGT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp GGTCTTCCGCGCCTCAATGACCTCCTTGGACATTACTaGAGCCTTCTCCACCGACTGGACACAGACACTGGA +
Preference number: 6 (lower is better)
Translates to: GLPRLNDLLGHY*SLLHRLDTDTG
Trigger: TCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGCTCCAGTAATGTCCAAGGAGGTCATTGAGGCGCGGAAGACC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp AGGTACTGCGAGTACCGCTGCCCCAGCTTCTGCACATaGTTAGTGACCTGCTTCTGCTTCACCAAATGCCGG +
Preference number: 6 (lower is better)
Translates to: RYCEYRCPSFCT*LVTCFCFTKCR
Trigger: CCGGCATTTGGTGAAGCAGAAGCAGGTCACTAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS TCA 72 bp CCAGCCAGCTTCTTGTTCCAGATCTTGGGCTCCTTGTaGAGGGTCCAGAACTCCTGTGTGAGGGCTTGCTTC +
Preference number: 6 (lower is better)
Translates to: PASFLFQILGSL*RVQNSCVRACF
Trigger: GAAGCAAGCCCTCACACAGGAGTTCTGGACCCTTCACAAGGAGCCCAAGATCTGGAACAAGAAGCTGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp CTTCTTCCATCATCTGCTTCAGACACCTCTGGATGGTaGGAACATCCTGGTCCCTGCGTCCCATGCACTGGA +
Preference number: 6 (lower is better)
Translates to: LLPSSASDTSGW*EHPGPCVPCTG
Trigger: TCCAGTGCATGGGACGCAGGGACCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCAGATGATGGAAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp AAGAGCAGCTGGGGCTGGAAGCCTTCTTCCATCATCTaGTTCAGACACCTCTGGATGGTGCGAACATCCTGG +
Preference number: 6 (lower is better)
Translates to: KSSWGWKPSSII*FRHLWMVRTSW
Trigger: CCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCAGATGATGGAAGAAGGCTTCCAGCCCCAGCTGCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp TGCCCCAGCTTCTGCACATGGTTAGTGACCTGCTTCTaGTTCACCAAATGCCGGTTTAACACCCGAAGGCCC +
Preference number: 6 (lower is better)
Translates to: CPSFCTWLVTCF*FTKCRFNTRRP
Trigger: GGGCCTTCGGGTGTTAAACCGGCATTTGGTGAAGCAGAAGCAGGTCACTAACCATGTGCAGAAGCTGGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp AGCTGGAGGTACTGCGAGTACCGCTGCCCCAGCTTCTaGACATGGTTAGTGACCTGCTTCTGCTTCACCAAA +
Preference number: 6 (lower is better)
Translates to: SWRYCEYRCPSF*TWLVTCFCFTK
Trigger: TTTGGTGAAGCAGAAGCAGGTCACTAACCATGTGCAGAAGCTGGGGCAGCGGTACTCGCAGTACCTCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp ACGCCCAAGGGCATACAGCCCTTGTCTCTAAAGATCTaGAGCACCAAGTCCAGCAGATGCCCGTTTACACGC +
Preference number: 6 (lower is better)
Translates to: TPKGIQPLSLKI*STKSSRCPFTR
Trigger: GCGTGTAAACGGGCATCTGCTGGACTTGGTGCTGCAGATCTTTAGAGACAAGGGCTGTATGCCCTTGGGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TGGAAGCCTTCTTCCATCATCTGCTTCAGACACCTCTaGATGGTGCGAACATCCTGGTCCCTGCGTCCCATG +
Preference number: 6 (lower is better)
Translates to: WKPSSIICFRHL*MVRTSWSLRPM
Trigger: CATGGGACGCAGGGACCAGGATGTTCGCACCATCCAGAGGTGTCTGAAGCAGATGATGGAAGAAGGCTTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TTACTGGAGCCTTCTCCACCGACTGGACACAGACACTaGAGCTCAGCTCCACATGCAGCTGCTGGTAGAAGA +
Preference number: 6 (lower is better)
Translates to: LLEPSPPTGHRH*SSAPHAAAGRR
Trigger: TCTTCTACCAGCAGCTGCATGTGGAGCTGAGCTCCAGTGTCTGTGTCCAGTCGGTGGAGAAGGCTCCAGTAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp GAGTCTCCCTTCTTGAGGCCAGTCAGGTTGATCAGGTaGATCTTAAGCCAGTCCAGACCACGTGGTCCCAGT +
Preference number: 6 (lower is better)
Translates to: ESPFLRPVRLIR*ILSQSRPRGPS
Trigger: ACTGGGACCACGTGGTCTGGACTGGCTTAAGATCCACCTGATCAACCTGACTGGCCTCAAGAAGGGAGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000161662.8
ENSMUST00000162694.8
CDS CAA 72 bp CTCCTTGTGAAGGGTCCAGAACTCCTGTGTGAGGGCTaGCTTCTGCTGGTCAACTTCCTTTTGGCGCCTCTG +
Preference number: 6 (lower is better)
Translates to: LLVKGPELLCEG*LLLVNFLLAPL
Trigger: CAGAGGCGCCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCTCACACAGGAGTTCTGGACCCTTCACAAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS TCA 72 bp TCTTGGGCTCCTTGTGAAGGGTCCAGAACTCCTGTGTaGGGGCTTGCTTCTGCTGGTCAACTTCCTTTTGGC +
Preference number: 6 (lower is better)
Translates to: SWAPCEGSRTPV*GLASAGQLPFG
Trigger: GCCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCTCACACAGGAGTTCTGGACCCTTCACAAGGAGCCCAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS GCA 72 bp TGCACATGGTTAGTGACCTGCTTCTGCTTCACCAAATaGCGGTTTAACACCCGAAGGCCCAGGTTATGGGCC +
Preference number: 6 (lower is better)
Translates to: CTWLVTCFCFTK*RFNTRRPRLWA
Trigger: GGCCCATAACCTGGGCCTTCGGGTGTTAAACCGGCATTTGGTGAAGCAGAAGCAGGTCACTAACCATGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8
CDS CCA 72 bp TGTGTGAGGGCTTGCTTCTGCTGGTCAACTTCCTTTTaGCGCCTCTGCTTCACCCTTTTCTCAGCCTCTAGC +
Preference number: 6 (lower is better)
Translates to: CVRACFCWSTSF*RLCFTLFSASS
Trigger: GCTAGAGGCTGAGAAAAGGGTGAAGCAGAGGCGCCAAAAGGAAGTTGACCAGCAGAAGCAAGCCCTCACACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020580.13
ENSMUST00000159016.8
ENSMUST00000162694.8