Pregenerated sensors for POLR3K (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038628Ensembl transcript IDs: ENSMUST00000039551.9
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCCATCCAGTACAAGAACTGAGGCCAGAGCTTGGCATATACAAGTaGTTTAATACTCAATACACCTCATTCAAAGAAGACTTCGTGGCT | + |
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Preference number: 1 (lower is better) Translates to: CHPVQELRPELGIYK*FNTQYTSFKEDFVA Trigger: AGCCACGAAGTCTTCTTTGAATGAGGTGTATTGAGTATTAAAGCACTTGTATATGCCAAGCTCTGGCCTCAGTTCTTGTACTGGATGGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CCA 90 bp | AGACAAGTTATCCCAATTATTCTATCCCTATACTACAGCTACCTGTaGCTATTTAAAGCCACGCAGAATCTGAATTGTCCTGTTTGTCCT | + |
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Preference number: 1 (lower is better) Translates to: RQVIPIILSLYYSYL*LFKATQNLNCPVCP Trigger: AGGACAAACAGGACAATTCAGATTCTGCGTGGCTTTAAATAGCCACAGGTAGCTGTAGTATAGGGATAGAATAATTGGGATAACTTGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR GCA 90 bp | CAAGATACCCACACAATAATTTCAGAGTCAATCGATGATACAAGCTaGCCACCTAGATTAGACAAGTTATCCCAATTATTCTATCCCTAT | + |
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Preference number: 1 (lower is better) Translates to: QDTHTIISESIDDTS*PPRLDKLSQLFYPY Trigger: ATAGGGATAGAATAATTGGGATAACTTGTCTAATCTAGGTGGGCAGCTTGTATCATCGATTGACTCTGAAATTATTGTGTGGGTATCTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR GCA 90 bp | CCTCCTCTTCTCCTCTGTGGCTCCCTATCTCTACAACTCTGTCCAATCACAGGCCACAAAATTCATGCTTaGAGCTGGGCAAGTCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: PPLLLCGSLSLQLCPITGHKIHA*SWASPA Trigger: GGCAGGACTTGCCCAGCTGCAAGCATGAATTTTGTG...GCCTGTGATTGGACAGAGTTGTAGAGATAGGGAGCCACAGAGGAGAAGAGGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCTTATCATGTGTAGAACTGTCCAGTTACACAGAACAGACCAGGACTTCCCATTAACCCCAGCACTCTaGAGGCAGAGGAAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: FLIMCRTVQLHRTDQDFPLTPAL*RQRKVD Trigger: ATCCACCTTCCTCTGCCTCCAGAGTGCTGGGGTTAA...TGGGAAGTCCTGGTCTGTTCTGTGTAACTGGACAGTTCTACACATGATAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCTGAGGCCTAATCCTGTTGTGGGAAATATTAAAAAGAACGGCAAGTTCCCGTCCTCTTCTCCTCTGTaGCTCCCTATCTCTACAACT | + |
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Preference number: 2 (lower is better) Translates to: FLRPNPVVGNIKKNGKFPSSSPL*LPISTT Trigger: AGTTGTAGAGATAGGGAGCCACAGAGGAGAAGAGGA...CGGGAACTTGCCGTTCTTTTTAATATTTCCCACAACAGGATTAGGCCTCAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR GCA 90 bp | TTTCTGAGGCCTAATCCTGTTGTGGGAAATATTAAAAAGAACGGCAAGTTCCCGTACACACAAAATTCATaGTTGCAGCTGGGCAAGTCC | + |
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Preference number: 2 (lower is better) Translates to: FLRPNPVVGNIKKNGKFPYTQNS*LQLGKS Trigger: GGACTTGCCCAGCTGCAAGCATGAATTTTGTGTGTA...CGGGAACTTGCCGTTCTTTTTAATATTTCCCACAACAGGATTAGGCCTCAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCACATGCCTATAACCCTAACACTTTTCCAACAAGAGGCAAAAAGATTAGAAGGAGGCAGAGGAAGGTaGATCACTGAGTTCAAGGTT | + |
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Preference number: 2 (lower is better) Translates to: VHMPITLTLFQQEAKRLEGGRGR*ITEFKV Trigger: AACCTTGAACTCAGTGATCCACCTTCCTCTGCCTCC...TTCTAATCTTTTTGCCTCTTGTTGGAAAAGTGTTAGGGTTATAGGCATGTGAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CCA 90 bp | CTACATTTCTTATCATGTGTAGAACTGTCCAGTTACACAGAACAGACCAGGACTGTTCAAGGTTATCATTaGTGGTCATGGCACACACTT | + |
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Preference number: 2 (lower is better) Translates to: LHFLSCVELSSYTEQTRTVQGYH*WSWHTL Trigger: AAGTGTGTGCCATGACCACCAATGATAACCTTGAAC...AGTCCTGGTCTGTTCTGTGTAACTGGACAGTTCTACACATGATAAGAAATGTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR TCA 90 bp | TTTCTTATCATGTGTAGAACTGTCCAGTTACACAGAACAGACCAGGACTTCCCACTGTTAACTTGCAGATaGGTTATATTTCACCCTGAT | + |
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Preference number: 2 (lower is better) Translates to: FLIMCRTVQLHRTDQDFPLLTCR*VIFHPD Trigger: ATCAGGGTGAAATATAACTCATCTGCAAGTTAACAG...TGGGAAGTCCTGGTCTGTTCTGTGTAACTGGACAGTTCTACACATGATAAGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CAA 90 bp | CCATTAGTGGTTTCAACAAATATGCAACTTTTCTGTTACTCTTGTTaGTTAGAGGAATTCGTGCTTGTGAGCTCTCTGAGATACTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: PLVVSTNMQLFCYSC*LEEFVLVSSLRYSQ Trigger: CTGAGAGTATCTCAGAGAGCTCACAAGCACGAATTCCTCTAACAAACAAGAGTAACAGAAAAGTTGCATATTTGTTGAAACCACTAATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CAA 90 bp | AATACCATTAGTGGTTTCAACAAATATGCAACTTTTCTGTTACTCTaGTTTGTTAGAGGAATTCGTGCTTGTGAGCTCTCTGAGATACTC | + |
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Preference number: 2 (lower is better) Translates to: NTISGFNKYATFLLL*FVRGIRACELSEIL Trigger: GAGTATCTCAGAGAGCTCACAAGCACGAATTCCTCTAACAAACAAGAGTAACAGAAAAGTTGCATATTTGTTGAAACCACTAATGGTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR GCA 72 bp | ACCAACAGTAAACATCCTCATTCTTCCACACACCTCTaGCATCCAGTACAAGAACTGAGGCCAGAGCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: TNSKHPHSSTHL*HPVQELRPELG Trigger: GCCAAGCTCTGGCCTCAGTTCTTGTACTGGATGGCAGAGGTGTGTGGAAGAATGAGGATGTTTACTGTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR TCA 72 bp | CAGATGGTTGTGAGCAATTGTGTGGCTGCTGTGAACTaGACTAACCCTAACTCTAGAAGAGCAGCCAGTGCT | + |
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Preference number: 3 (lower is better) Translates to: QMVVSNCVAAVN*TNPNSRRAASA Trigger: AGCACTGGCTGCTCTTCTAGAGTTAGGGTTAGTTCAGTTCACAGCAGCCACACAATTGCTCACAACCATCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR TCA 72 bp | ATTCTTCCACACACCTCTGCCATCCAGTACAAGAACTaGGGCCAGAGCTTGGCATATACAAGTGCTTTAATA | + |
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Preference number: 3 (lower is better) Translates to: ILPHTSAIQYKN*GQSLAYTSALI Trigger: TATTAAAGCACTTGTATATGCCAAGCTCTGGCCTCAGTTCTTGTACTGGATGGCAGAGGTGTGTGGAAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR TCA 72 bp | ACAGCTACCTGTGGCTATTTAAAGCCACGCAGAATCTaGATTGTCCTGTTTGTCCTCCATTTTCTTCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: TATCGYLKPRRI*IVLFVLHFLPP Trigger: AGGAGGAAGAAAATGGAGGACAAACAGGACAATTCAGATTCTGCGTGGCTTTAAATAGCCACAGGTAGCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CAA 90 bp | TTCCAACAAGAGGCAAAAAGATTAGAAGGTTCAAGGTTATCATTGGTGGTCATGACACAAAATTCATGCTaGCAGCTGGGCAAGTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: FQQEAKRLEGSRLSLVVMTQNSC*QLGKSC Trigger: GCAGGACTTGCCCAGCTGCAAGCATGAATTTTGTGT...CATGACCACCAATGATAACCTTGAACCTTCTAATCTTTTTGCCTCTTGTTGGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGAGGCCTAATCCTGTTGTGGGAAATATTAAAAAGAACGGCAAGTTCCCGCACGCAGAATCTGAATaGTCCTGTTTGTCCTCCATT | + |
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Preference number: 3 (lower is better) Translates to: FLRPNPVVGNIKKNGKFPHAESE*SCLSSI Trigger: AATGGAGGACAAACAGGACAATTCAGATTCTGCGTG...CGGGAACTTGCCGTTCTTTTTAATATTTCCCACAACAGGATTAGGCCTCAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CAA 90 bp | TCGTGGCTCTACTTTGTAACGGAGTTATTTAAAGGAGATAAGCAACAAAGTTCCAACCAAGTTCCTAGTTaGAATGGTAAGGAACAGGAC | + |
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Preference number: 3 (lower is better) Translates to: SWLYFVTELFKGDKQQSSNQVPS*NGKEQD Trigger: GTCCTGTTCCTTACCATTCAAACTAGGAACTTGGTT...GGAACTTTGTTGCTTATCTCCTTTAAATAACTCCGTTACAAAGTAGAGCCACGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CCA 72 bp | ATCCCAATTATTCTATCCCTATACTACAGCTACCTGTaGCTATTTAAAGCCACGCAGAATCTGAATTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: IPIILSLYYSYL*LFKATQNLNCP Trigger: AGGACAATTCAGATTCTGCGTGGCTTTAAATAGCCACAGGTAGCTGTAGTATAGGGATAGAATAATTGGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR-3UTR CAA 90 bp | TCGTGGCTCTACTTTGTAACGGAGTTATTTAAAGGAGATAAGCAACAAAGTTCCTCACTGAGTTCAAGGTaGACTTGTCTACATAACAAG | + |
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Preference number: 3 (lower is better) Translates to: SWLYFVTELFKGDKQQSSSLSSR*TCLHNK Trigger: CTTGTTATGTAGACAAGTCAACCTTGAACTCAGTGA...GGAACTTTGTTGCTTATCTCCTTTAAATAACTCCGTTACAAAGTAGAGCCACGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR TCA 72 bp | ACATGGCTATTTTTAGGATACTTGACCCAATTATTGTaGAATTCTTTTCTGAGGCCTAATCCTGTTGTGGGA | + |
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Preference number: 3 (lower is better) Translates to: TWLFLGYLTQLL*NSFLRPNPVVG Trigger: TCCCACAACAGGATTAGGCCTCAGAAAAGAATTTCACAATAATTGGGTCAAGTATCCTAAAAATAGCCATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR GCA 72 bp | CACACAATAATTTCAGAGTCAATCGATGATACAAGCTaGCCACCTAGATTAGACAAGTTATCCCAATTATTC | + |
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Preference number: 3 (lower is better) Translates to: HTIISESIDDTS*PPRLDKLSQLF Trigger: GAATAATTGGGATAACTTGTCTAATCTAGGTGGGCAGCTTGTATCATCGATTGACTCTGAAATTATTGTGTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR TCA 72 bp | TTATCTGTTAACTTGCAGATGAGTTATATTTCACCCTaGTCCTTCACCACAGAAAAGTCAGCTTACTATCAT | + |
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Preference number: 3 (lower is better) Translates to: LSVNLQMSYISP*SFTTEKSAYYH Trigger: ATGATAGTAAGCTGACTTTTCTGTGGTGAAGGATCAGGGTGAAATATAACTCATCTGCAAGTTAACAGATAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CCA 72 bp | TTAATACTCAATACACCTCATTCAAAGAAGACTTCGTaGCTCTACTTTGTAACGGAGTTATTTAAAGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: LILNTPHSKKTS*LYFVTELFKGD Trigger: ATCTCCTTTAAATAACTCCGTTACAAAGTAGAGCCACGAAGTCTTCTTTGAATGAGGTGTATTGAGTATTAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR GCA 90 bp | CCTCCTCTTCTCCTCTGTGGCTCCCTATCTCTACAACTCTGTCCAATCACAGGCCGTAGGGGCAAGTGTTaGAGGCGAAGCGATGGCAAC | + |
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Preference number: 4 (lower is better) Translates to: PPLLLCGSLSLQLCPITGRRGKC*RRSDGN Trigger: GTTGCCATCGCTTCGCCTGCAACACTTGCCCCTACG...GCCTGTGATTGGACAGAGTTGTAGAGATAGGGAGCCACAGAGGAGAAGAGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR TCA 90 bp | CTACATTTCTTATCATGTGTAGAACTGTCCAGTTACACAGAACAGACCAGGACTGCCCCTCCTCCACAATaGGTCCGTTCCCGCAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LHFLSCVELSSYTEQTRTAPPPQ*VRSRSP Trigger: CGGGCTGCGGGAACGGACTCATTGTGGAGGAGGGGC...AGTCCTGGTCTGTTCTGTGTAACTGGACAGTTCTACACATGATAAGAAATGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR GCA 90 bp | CCTCCTCTTCTCCTCTGTGGCTCCCTATCTCTACAACTCTGTCCAATCACAGGCTTTTGGACATGGCTCTaGAGTAGAGTCCACATTCTC | + |
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Preference number: 4 (lower is better) Translates to: PPLLLCGSLSLQLCPITGFWTWL*SRVHIL Trigger: GAGAATGTGGACTCTACTGCAGAGCCATGTCCAAAA...GCCTGTGATTGGACAGAGTTGTAGAGATAGGGAGCCACAGAGGAGAAGAGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR CCA 90 bp | TTCACCACAGAAAAGTCAGCTTACTATCATATAGCAAAGACCTTCAGTACACACTTGCAGGCGAAGCGATaGCAACGCTGCCCCTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: FTTEKSAYYHIAKTFSTHLQAKR*QRCPSS Trigger: GGAGGAGGGGCAGCGTTGCCATCGCTTCGCCTGCAA...GTGTGTACTGAAGGTCTTTGCTATATGATAGTAAGCTGACTTTTCTGTGGTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR GCA 90 bp | TTTCTTATCATGTGTAGAACTGTCCAGTTACACAGAACAGACCAGGACTTCCCAAAGCGATGGCAACGCTaGCCCTCCTCCACAATGAGT | + |
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Preference number: 4 (lower is better) Translates to: FLIMCRTVQLHRTDQDFPKRWQR*PSSTMS Trigger: ACTCATTGTGGAGGAGGGGCAGCGTTGCCATCGCTT...TGGGAAGTCCTGGTCTGTTCTGTGTAACTGGACAGTTCTACACATGATAAGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR GCA 90 bp | TCGTGGCTCTACTTTGTAACGGAGTTATTTAAAGGAGATAAGCAACAAAGTTCCGTCCACATTCTCCCATaGAGCTGCTCCACCAAGCAC | + |
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Preference number: 4 (lower is better) Translates to: SWLYFVTELFKGDKQQSSVHILP*SCSTKH Trigger: GTGCTTGGTGGAGCAGCTGCATGGGAGAATGTGGAC...GGAACTTTGTTGCTTATCTCCTTTAAATAACTCCGTTACAAAGTAGAGCCACGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CAA 72 bp | AGCTTTGCTGAGAAAAGTTTACTGAACGAACTGAGATaGACGCAGGCAGAAGCATGGGGCTTTATCTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: SFAEKSLLNELR*TQAEAWGFIFP Trigger: AGGGAAGATAAAGCCCCATGCTTCTGCCTGCGTCAATCTCAGTTCGTTCAGTAAACTTTTCTCAGCAAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| CDS-3UTR CCA 90 bp | CTACATTTCTTATCATGTGTAGAACTGTCCAGTTACACAGAACAGACCAGGACTTTCGCATTTTGGACATaGCTCTGCAGTAGAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: LHFLSCVELSSYTEQTRTFAFWT*LCSRVH Trigger: GTGGACTCTACTGCAGAGCCATGTCCAAAATGCGAA...AGTCCTGGTCTGTTCTGTGTAACTGGACAGTTCTACACATGATAAGAAATGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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| 3UTR CAA 72 bp | GTTTCAACAAATATGCAACTTTTCTGTTACTCTTGTTaGTTAGAGGAATTCGTGCTTGTGAGCTCTCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: VSTNMQLFCYSC*LEEFVLVSSLR Trigger: TCTCAGAGAGCTCACAAGCACGAATTCCTCTAACAAACAAGAGTAACAGAAAAGTTGCATATTTGTTGAAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039551.9 |
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