Pregenerated sensors for POLR3GL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028104Ensembl transcript IDs: ENSMUST00000091924.10, ENSMUST00000145001.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTAAGTACATAGGGATATTTAGTTCCTGTATCTCAAATCAAGAATaGTATATGGGCCCAGGTTTTCAGTCTATGGCCCAGGTTTTCAGT | + |
|
Preference number: 1 (lower is better) Translates to: PKYIGIFSSCISNQE*YMGPGFQSMAQVFS Trigger: ACTGAAAACCTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGATTTGAGATACAGGAACTAAATATCCCTATGTACTTAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| 3UTR TCA 72 bp | ATAGGGATATTTAGTTCCTGTATCTCAAATCAAGAATaGTATATGGGCCCAGGTTTTCAGTCTATGGCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: IGIFSSCISNQE*YMGPGFQSMAQ Trigger: CTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGATTTGAGATACAGGAACTAAATATCCCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| 3UTR CCA 72 bp | TATTTAGTTCCTGTATCTCAAATCAAGAATGATATATaGGCCCAGGTTTTCAGTCTATGGCCCAGGTTTTCA | + |
|
Preference number: 3 (lower is better) Translates to: YLVPVSQIKNDI*AQVFSLWPRFS Trigger: TGAAAACCTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGATTTGAGATACAGGAACTAAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | CTGTTCCCACCCCAAGTCTCCCCTAAACTGTCAACGGCTGCGCATCACAGCCCCTGCCGGCAGAGGCACTaGGTGGAACTCCAAGGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LFPPQVSPKLSTAAHHSPCRQRH*VELQGR Trigger: CCTCCCTTGGAGTTCCACCCAGTGCCTCTGCCGGCA...GGGGCTGTGATGCGCAGCCGTTGACAGTTTAGGGGAGACTTGGGGTGGGAACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | AATGCTAGTAAGTCTGCTGTGGTGGCGCGTCCCTGTAATCCCAAGGCTTGGGGGAGGGGAGCTGCCTCATaGCCCCGCGCAGCTCTTGCT | + |
|
Preference number: 4 (lower is better) Translates to: NASKSAVVARPCNPKAWGRGAAS*PRAALA Trigger: AGCAAGAGCTGCGCGGGGCCATGAGGCAGCTCCCCT...CCCCCAAGCCTTGGGATTACAGGGACGCGCCACCACAGCAGACTTACTAGCATT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | CTGTTCCCACCCCAAGTCTCCCCTAAACTGTCAACGGCTGCGCATCACAGCCCCGGCAGAGGCACTGGGTaGAACTCCAAGGGAGGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LFPPQVSPKLSTAAHHSPGRGTG*NSKGGK Trigger: CTTTCCTCCCTTGGAGTTCCACCCAGTGCCTCTGCC...GGGGCTGTGATGCGCAGCCGTTGACAGTTTAGGGGAGACTTGGGGTGGGAACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | AATGCTAGTAAGTCTGCTGTGGTGGCGCGTCCCTGTAATCCCAAGGCTTGGGGGGGGCTGGAGAGTGGGTaGGGGCAAAGCATCACCCTT | + |
|
Preference number: 4 (lower is better) Translates to: NASKSAVVARPCNPKAWGGLESG*GQSITL Trigger: AAGGGTGATGCTTTGCCCCCACCCACTCTCCAGCCC...CCCCCAAGCCTTGGGATTACAGGGACGCGCCACCACAGCAGACTTACTAGCATT 59% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | AATGCTAGTAAGTCTGCTGTGGTGGCGCGTCCCTGTAATCCCAAGGCTTGGGGGTCTCTTGGGGACGGCTaGCCGGATGAAGTAGGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: NASKSAVVARPCNPKAWGSLGDG*PDEVGE Trigger: CTCCCCTACTTCATCCGGCCAGCCGTCCCCAAGAGA...CCCCCAAGCCTTGGGATTACAGGGACGCGCCACCACAGCAGACTTACTAGCATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | CAAAATTCAAGGCCAGCCTCAGCTACATACCGAGTTCCAGGCCAGCTTGAGCTAGAGAGGGCTGGAGAGTaGGTGGGGGCAAAGCATCAC | + |
|
Preference number: 4 (lower is better) Translates to: QNSRPASATYRVPGQLELERAGE*VGAKHH Trigger: GTGATGCTTTGCCCCCACCCACTCTCCAGCCCTCTC...TAGCTCAAGCTGGCCTGGAACTCGGTATGTAGCTGAGGCTGGCCTTGAATTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR TCA 90 bp | TCAAGAATGATATATGGGCCCAGGTTTTCAGTCTATGGCCCAGGTTTTCAGTCTGGACGGCTGGCCGGATaGAGTAGGGGAGCTGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: SRMIYGPRFSVYGPGFQSGRLAG*SRGAAS Trigger: TGAGGCAGCTCCCCTACTTCATCCGGCCAGCCGTCC...AGACTGAAAACCTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR GCA 90 bp | CAAAATTCAAGGCCAGCCTCAGCTACATACCGAGTTCCAGGCCAGCTTGAGCTACAGCTCTTGCTTCAGTaGCAGGACATACTCCCCCTC | + |
|
Preference number: 4 (lower is better) Translates to: QNSRPASATYRVPGQLELQLLLQ*QDILPL Trigger: GAGGGGGAGTATGTCCTGGCACTGAAGCAAGAGCTG...TAGCTCAAGCTGGCCTGGAACTCGGTATGTAGCTGAGGCTGGCCTTGAATTTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR TCA 90 bp | TCAAGAATGATATATGGGCCCAGGTTTTCAGTCTATGGCCCAGGTTTTCAGTCTCCACAGCCTCCATGTTaGAGGTCAACTGGCCCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: SRMIYGPRFSVYGPGFQSPQPPC*RSTGPG Trigger: GCCGGGGCCAGTTGACCTTCAACATGGAGGCTGTGG...AGACTGAAAACCTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CCA 90 bp | TCAAGAATGATATATGGGCCCAGGTTTTCAGTCTATGGCCCAGGTTTTCAGTCTAAGAGTGGAGAGGGCTaGAGAGTGGGTGGGGGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: SRMIYGPRFSVYGPGFQSKSGEG*RVGGGK Trigger: TTTGCCCCCACCCACTCTCCAGCCCTCTCCACTCTT...AGACTGAAAACCTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS GCA 90 bp | GCGCAGCTCTTGCTTCAGTGCCAGGACATACTCCCCCTCCTCTCCTaGCGGCAGAGGCACTGGGTGGAACTCCAAGGGAGGAAAGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: AQLLLQCQDILPLLS*RQRHWVELQGRKEW Trigger: CCACTCTTTCCTCCCTTGGAGTTCCACCCAGTGCCTCTGCCGGCAGGAGAGGAGGGGGAGTATGTCCTGGCACTGAAGCAAGAGCTGCGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CAA 90 bp | CTGTTCCCACCCCAAGTCTCCCCTAAACTGTCAACGGCTGCGCATCACAGCCCCCGTTCCACATCTCTCTaGGGGACGGCTGGCCGGATG | + |
|
Preference number: 5 (lower is better) Translates to: LFPPQVSPKLSTAAHHSPRSTSL*GTAGRM Trigger: CATCCGGCCAGCCGTCCCCAAGAGAGATGTGGAACG...GGGGCTGTGATGCGCAGCCGTTGACAGTTTAGGGGAGACTTGGGGTGGGAACAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CAA 90 bp | CTGTTCCCACCCCAAGTCTCCCCTAAACTGTCAACGGCTGCGCATCACAGCCCCTTCCAATCGATGGCGTaGTCAATAGGCCCAGACATC | + |
|
Preference number: 5 (lower is better) Translates to: LFPPQVSPKLSTAAHHSPFQSMA*SIGPDI Trigger: GATGTCTGGGCCTATTGACAACGCCATCGATTGGAA...GGGGCTGTGATGCGCAGCCGTTGACAGTTTAGGGGAGACTTGGGGTGGGAACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS-3UTR CAA 90 bp | TCAAGAATGATATATGGGCCCAGGTTTTCAGTCTATGGCCCAGGTTTTCAGTCTGGCCCCGCGCAGCTCTaGCTTCAGTGCCAGGACATA | + |
|
Preference number: 5 (lower is better) Translates to: SRMIYGPRFSVYGPGFQSGPAQL*LQCQDI Trigger: TATGTCCTGGCACTGAAGCAAGAGCTGCGCGGGGCC...AGACTGAAAACCTGGGCCATAGACTGAAAACCTGGGCCCATATATCATTCTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS GCA 72 bp | TTGCTTCAGTGCCAGGACATACTCCCCCTCCTCTCCTaGCGGCAGAGGCACTGGGTGGAACTCCAAGGGAGG | + |
|
Preference number: 6 (lower is better) Translates to: LLQCQDILPLLS*RQRHWVELQGR Trigger: CCTCCCTTGGAGTTCCACCCAGTGCCTCTGCCGGCAGGAGAGGAGGGGGAGTATGTCCTGGCACTGAAGCAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091924.10 |
||
| CDS TCA 72 bp | TGGTCCGCTCCTTCTGTACTTTCCGCACTCGAATCTTaGGCTCACTGGGGAGTCGCCGCCAATCAGGGTTCC | + |
|
Preference number: 6 (lower is better) Translates to: WSAPSVLSALES*AHWGVAANQGS Trigger: GGAACCCTGATTGGCGGCGACTCCCCAGTGAGCTCAAGATTCGAGTGCGGAAAGTACAGAAGGAGCGGACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091924.10 ENSMUST00000145001.2 |
||
| CDS CAA 72 bp | GTGGTCCGCTCCTTCTGTACTTTCCGCACTCGAATCTaGAGCTCACTGGGGAGTCGCCGCCAATCAGGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: VVRSFCTFRTRI*SSLGSRRQSGF Trigger: GAACCCTGATTGGCGGCGACTCCCCAGTGAGCTCAAGATTCGAGTGCGGAAAGTACAGAAGGAGCGGACCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091924.10 ENSMUST00000145001.2 |
||
| CDS CAA 90 bp | AGGATAATGGTGGTCCGCTCCTTCTGTACTTTCCGCACTCGAATCTaGAGCTCACTGGGGAGTCGCCGCCAATCAGGGTTCCAATCGATG | + |
|
Preference number: 6 (lower is better) Translates to: RIMVVRSFCTFRTRI*SSLGSRRQSGFQSM Trigger: CATCGATTGGAACCCTGATTGGCGGCGACTCCCCAGTGAGCTCAAGATTCGAGTGCGGAAAGTACAGAAGGAGCGGACCACCATTATCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000091924.10 ENSMUST00000145001.2 |
||
| CDS CAA 72 bp | GTCTCCTCCTTATCGTCTGTGCTCTTAGGGGGCCTCTaGGGAAGGATAATGGTGGTCCGCTCCTTCTGTACT | + |
|
Preference number: 6 (lower is better) Translates to: VSSLSSVLLGGL*GRIMVVRSFCT Trigger: AGTACAGAAGGAGCGGACCACCATTATCCTTCCCAAGAGGCCCCCTAAGAGCACAGACGATAAGGAGGAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091924.10 ENSMUST00000145001.2 |
||
| CDS CAA 90 bp | TTCTGTATCGTCTCCTCCTTATCGTCTGTGCTCTTAGGGGGCCTCTaGGGAAGGATAATGGTGGTCCGCTCCTTCTGTACTTTCCGCACT | + |
|
Preference number: 6 (lower is better) Translates to: FCIVSSLSSVLLGGL*GRIMVVRSFCTFRT Trigger: AGTGCGGAAAGTACAGAAGGAGCGGACCACCATTATCCTTCCCAAGAGGCCCCCTAAGAGCACAGACGATAAGGAGGAGACGATACAGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091924.10 ENSMUST00000145001.2 |
||