Pregenerated sensors for POLR3G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035834Ensembl transcript IDs: ENSMUST00000048993.12, ENSMUST00000161920.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACACTGTACACTGTAAGGCTTGGAGTTATCCCCAAGGCCAAGCGTTaGGAACCTTCCACCCACGTGAAAGTCTTTGTTGTGGCTGAGGTG | + |
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Preference number: 1 (lower is better) Translates to: TLYTVRLGVIPKAKR*EPSTHVKVFVVAEV Trigger: CACCTCAGCCACAACAAAGACTTTCACGTGGGTGGAAGGTTCTCAACGCTTGGCCTTGGGGATAACTCCAAGCCTTACAGTGTACAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR GCA 90 bp | GCTGAGGTGGAAACTGAAGTGGGTCTCACCCAGGTCACTGGTGCTTaGCGAGAACCTGTTTCCTATCAGCATAACTCTACTGTTAGGAAC | + |
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Preference number: 1 (lower is better) Translates to: AEVETEVGLTQVTGA*REPVSYQHNSTVRN Trigger: GTTCCTAACAGTAGAGTTATGCTGATAGGAAACAGGTTCTCGGCAAGCACCAGTGACCTGGGTGAGACCCACTTCAGTTTCCACCTCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 90 bp | GCATTGCATAGTCACAGGTGTGGCAGAGGTAAGGGAGTAAGGTCATaGGCTGTAAACACAAAGTCGTTCTCAAGAGTTGGATACAGAACA | + |
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Preference number: 1 (lower is better) Translates to: ALHSHRCGRGKGVRS*AVNTKSFSRVGYRT Trigger: TGTTCTGTATCCAACTCTTGAGAACGACTTTGTGTTTACAGCCCATGACCTTACTCCCTTACCTCTGCCACACCTGTGACTATGCAATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 90 bp | AAAGAACTCACTGCCAGTGCGGCTCCCAACTGGAAAAGTTATCTGTaGCTTTGTAATACTGGAAGGAAACAACCAAAGAGTGTCTACGAA | + |
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Preference number: 1 (lower is better) Translates to: KELTASAAPNWKSYL*LCNTGRKQPKSVYE Trigger: TTCGTAGACACTCTTTGGTTGTTTCCTTCCAGTATTACAAAGCCACAGATAACTTTTCCAGTTGGGAGCCGCACTGGCAGTGAGTTCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 90 bp | AGACTCAGAGCTAAAGTAAACAAGATTTATGGTAGTCAAGCAGCCTaGAAAATCTCATCTCTCCTCAAAATTAGTACGTTTAGAGTTGTA | + |
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Preference number: 1 (lower is better) Translates to: RLRAKVNKIYGSQAA*KISSLLKISTFRVV Trigger: TACAACTCTAAACGTACTAATTTTGAGGAGAGATGAGATTTTCCAGGCTGCTTGACTACCATAAATCTTGTTTACTTTAGCTCTGAGTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR TCA 90 bp | CTACGAATGGAATCTTGTTTGGCCCCGGTATCAAACATAAGAGAATaGAGTACTTTTTATTCCCAAATAACAGCATTTGCCATTATTACT | + |
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Preference number: 1 (lower is better) Translates to: LRMESCLAPVSNIRE*STFYSQITAFAIIT Trigger: AGTAATAATGGCAAATGCTGTTATTTGGGAATAAAAAGTACTTCATTCTCTTATGTTTGATACCGGGGCCAAACAAGATTCCATTCGTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 90 bp | TACGTTAGTTTCGAAATGCATACTATGAATTCCCTTGAAAATCTTTaGCATGTTTTAAAGTCCTCAGAGGTGAAGGGATCTGGATATTTT | + |
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Preference number: 1 (lower is better) Translates to: YVSFEMHTMNSLENL*HVLKSSEVKGSGYF Trigger: AAAATATCCAGATCCCTTCACCTCTGAGGACTTTAAAACATGCCAAAGATTTTCAAGGGAATTCATAGTATGCATTTCGAAACTAACGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 90 bp | AATCCTGTGGGAAAGCGCTTCCCTCTGGGTGGAAGGCGCACACCCTaGAAGACAGTGGATGCTGGGAAAGAACTCACTGCCAGTGCGGCT | + |
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Preference number: 2 (lower is better) Translates to: NPVGKRFPLGGRRTP*KTVDAGKELTASAA Trigger: AGCCGCACTGGCAGTGAGTTCTTTCCCAGCATCCACTGTCTTCAAGGGTGTGCGCCTTCCACCCAGAGGGAAGCGCTTTCCCACAGGATT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR TCA 90 bp | AGTCTTGTGAAACACAAAGGAGGGGAGTGCCCTTCACCATATCCACTCACACACCCCAAGGCCAAGCGTTaGGAACCTTCCACCCACGTG | + |
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Preference number: 2 (lower is better) Translates to: SLVKHKGGECPSPYPLTHPKAKR*EPSTHV Trigger: CACGTGGGTGGAAGGTTCTCAACGCTTGGCCTTGGG...GTGTGTGAGTGGATATGGTGAAGGGCACTCCCCTCCTTTGTGTTTCACAAGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR TCA 90 bp | TCCTGGGAACTGGATGTAAGCGTTCAGCAGTATACTGTCAAGATGGGCTCTCGACCAAACGCTCGAAGCTaGATCCCCCAAACATTTGAG | + |
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Preference number: 2 (lower is better) Translates to: SWELDVSVQQYTVKMGSRPNARS*IPQTFE Trigger: CTCAAATGTTTGGGGGATTCAGCTTCGAGCGTTTGG...TCGAGAGCCCATCTTGACAGTATACTGCTGAACGCTTACATCCAGTTCCCAGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR GCA 90 bp | TTGTTGTGGCTGAGGTGGAAACTGAAGTGGGTCTCACCCAGGTCACTGGTGCTTGTGAACACACAAGAGTaGCACGAAAACTCTCTAGAA | + |
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Preference number: 2 (lower is better) Translates to: LLWLRWKLKWVSPRSLVLVNTQE*HENSLE Trigger: TTCTAGAGAGTTTTCGTGGCACTCTTGTGTGTTCAC...AAGCACCAGTGACCTGGGTGAGACCCACTTCAGTTTCCACCTCAGCCACAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CCA 90 bp | TTTATGAGTCTTGTGAAACACAAAGGAGGGGAGTGCCCTTCACCATATCCACTCAGGTGGAAACTGAAGTaGGTCTCACCCAGGTCACTG | + |
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Preference number: 2 (lower is better) Translates to: FMSLVKHKGGECPSPYPLRWKLK*VSPRSL Trigger: CAGTGACCTGGGTGAGACCCACTTCAGTTTCCACCT...GAGTGGATATGGTGAAGGGCACTCCCCTCCTTTGTGTTTCACAAGACTCATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 90 bp | CATTCAAATCCAGATCAAACAAAAGCCAGAGAACCCACAACCGCATaGCATAGTCACAGGTGTGGCAGAGGTAAGGGAGTAAGGTCATGG | + |
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Preference number: 2 (lower is better) Translates to: HSNPDQTKAREPTTA*HSHRCGRGKGVRSW Trigger: CCATGACCTTACTCCCTTACCTCTGCCACACCTGTGACTATGCAATGCGGTTGTGGGTTCTCTGGCTTTTGTTTGATCTGGATTTGAATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR TCA 90 bp | GTGTCTCAGCTTCCCCTCCCACAAGTCCCAGCCCAACAAGTTGAAAGTGTCAGATTGGATACAGAACACTaGACAACAGAAAATACGGAC | + |
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Preference number: 2 (lower is better) Translates to: VSQLPLPQVPAQQVESVRLDTEH*TTENTD Trigger: GTCCGTATTTTCTGTTGTTCAGTGTTCTGTATCCAA...TCTGACACTTTCAACTTGTTGGGCTGGGACTTGTGGGAGGGGAAGCTGAGACAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR TCA 90 bp | TCCTGGGAACTGGATGTAAGCGTTCAGCAGTATACTGTCAAGATGGGCTCTCGACACACCATTTTATCATaGGGTTTACACAACCAGGAC | + |
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Preference number: 2 (lower is better) Translates to: SWELDVSVQQYTVKMGSRHTILS*GLHNQD Trigger: GTCCTGGTTGTGTAAACCTCATGATAAAATGGTGTG...TCGAGAGCCCATCTTGACAGTATACTGCTGAACGCTTACATCCAGTTCCCAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CCA 90 bp | AAGCGTTCAGCAGTATACTGTCAAGATGGGCTCTCGAACCCATCAGGAAGTATTTTGTTGTGGCTGAGGTaGAAACTGAAGTGGGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: KRSAVYCQDGLSNPSGSILLWLR*KLKWVS Trigger: TGAGACCCACTTCAGTTTCCACCTCAGCCACAACAA...AATACTTCCTGATGGGTTCGAGAGCCCATCTTGACAGTATACTGCTGAACGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CCA 90 bp | TGGGAAAGAACTCACTGCCAGTGCGGCTCCCAACTGGAAAAGTTATCTGTGGCTGCAGCTTTAAAGACTTaGTTTCCACTAGGAATCTCA | + |
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Preference number: 2 (lower is better) Translates to: WERTHCQCGSQLEKLSVAAALKT*FPLGIS Trigger: TGAGATTCCTAGTGGAAACCAAGTCTTTAAAGCTGC...AGCCACAGATAACTTTTCCAGTTGGGAGCCGCACTGGCAGTGAGTTCTTTCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CCA 90 bp | TTGCAGTTTATGAGTCTTGTGAAACACAAAGGAGGGGAGTGCCCTTCACCATATAAGGGAGTAAGGTCATaGGCTGTAAACACAAAGTCG | + |
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Preference number: 2 (lower is better) Translates to: LQFMSLVKHKGGECPSPYKGVRS*AVNTKS Trigger: CGACTTTGTGTTTACAGCCCATGACCTTACTCCCTT...ATATGGTGAAGGGCACTCCCCTCCTTTGTGTTTCACAAGACTCATAAACTGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 90 bp | ATGGGCTCTCGAACCCATCAGGAAGTATTTAAAGAAGCACTGCCATaGAAAGTGATCCTTCACCTGAGAAAAGACTTTTGGAATCTCTCG | + |
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Preference number: 2 (lower is better) Translates to: MGSRTHQEVFKEALP*KVILHLRKDFWNLS Trigger: CGAGAGATTCCAAAAGTCTTTTCTCAGGTGAAGGATCACTTTCAATGGCAGTGCTTCTTTAAATACTTCCTGATGGGTTCGAGAGCCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CCA 90 bp | TTTATGAGTCTTGTGAAACACAAAGGAGGGGAGTGCCCTTCACCATATCCACTCTTATCCAAAATAAAGTaGGTCCAAACGCTCGAAGCT | + |
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Preference number: 2 (lower is better) Translates to: FMSLVKHKGGECPSPYPLLSKIK*VQTLEA Trigger: AGCTTCGAGCGTTTGGACCCACTTTATTTTGGATAA...GAGTGGATATGGTGAAGGGCACTCCCCTCCTTTGTGTTTCACAAGACTCATAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CCA 90 bp | AAGCGTTCAGCAGTATACTGTCAAGATGGGCTCTCGAACCCATCAGGAAGTATTAGAGGTGAAGGGATCTaGATATTTTCTCCTGCAAAA | + |
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Preference number: 2 (lower is better) Translates to: KRSAVYCQDGLSNPSGSIRGEGI*IFSPAK Trigger: TTTTGCAGGAGAAAATATCCAGATCCCTTCACCTCT...AATACTTCCTGATGGGTTCGAGAGCCCATCTTGACAGTATACTGCTGAACGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR GCA 90 bp | CTCACGTCCACAGTACTACGTACAGAGCAAACAATTTACGACATGGTTGTTTCTTTAAAGTGCCCCACGTaGAGTATTAAGAGAAATCCA | + |
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Preference number: 2 (lower is better) Translates to: LTSTVLRTEQTIYDMVVSLKCPT*SIKRNP Trigger: TGGATTTCTCTTAATACTGCACGTGGGGCACTTTAA...AGAAACAACCATGTCGTAAATTGTTTGCTCTGTACGTAGTACTGTGGACGTGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 90 bp | GTAATACTGGAAGGAAACAACCAAAGAGTGTCTACGAATGGAATCTaGTTTGGCCCCGGTATCAAACATAAGAGAATGAAGTACTTTTTA | + |
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Preference number: 2 (lower is better) Translates to: VILEGNNQRVSTNGI*FGPGIKHKRMKYFL Trigger: TAAAAAGTACTTCATTCTCTTATGTTTGATACCGGGGCCAAACAAGATTCCATTCGTAGACACTCTTTGGTTGTTTCCTTCCAGTATTAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 72 bp | GGGTGGAAGGCGCACACCCTTGAAGACAGTGGATGCTaGGAAAGAACTCACTGCCAGTGCGGCTCCCAACTG | + |
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Preference number: 3 (lower is better) Translates to: GWKAHTLEDSGC*ERTHCQCGSQL Trigger: CAGTTGGGAGCCGCACTGGCAGTGAGTTCTTTCCCAGCATCCACTGTCTTCAAGGGTGTGCGCCTTCCACCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR GCA 72 bp | GAAGACAGTGGATGCTGGGAAAGAACTCACTGCCAGTaGGGCTCCCAACTGGAAAAGTTATCTGTGGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: EDSGCWERTHCQ*GSQLEKLSVAL Trigger: CAAAGCCACAGATAACTTTTCCAGTTGGGAGCCGCACTGGCAGTGAGTTCTTTCCCAGCATCCACTGTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR GCA 72 bp | ACCCTTGAAGACAGTGGATGCTGGGAAAGAACTCACTaGCAGTGCGGCTCCCAACTGGAAAAGTTATCTGTG | + |
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Preference number: 3 (lower is better) Translates to: TLEDSGCWERTH*QCGSQLEKLSV Trigger: CACAGATAACTTTTCCAGTTGGGAGCCGCACTGGCAGTGAGTTCTTTCCCAGCATCCACTGTCTTCAAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR TCA 72 bp | ACTGTAAGGCTTGGAGTTATCCCCAAGGCCAAGCGTTaGGAACCTTCCACCCACGTGAAAGTCTTTGTTGTG | + |
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Preference number: 3 (lower is better) Translates to: TVRLGVIPKAKR*EPSTHVKVFVV Trigger: CACAACAAAGACTTTCACGTGGGTGGAAGGTTCTCAACGCTTGGCCTTGGGGATAACTCCAAGCCTTACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR GCA 72 bp | GAAACTGAAGTGGGTCTCACCCAGGTCACTGGTGCTTaGCGAGAACCTGTTTCCTATCAGCATAACTCTACT | + |
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Preference number: 3 (lower is better) Translates to: ETEVGLTQVTGA*REPVSYQHNST Trigger: AGTAGAGTTATGCTGATAGGAAACAGGTTCTCGGCAAGCACCAGTGACCTGGGTGAGACCCACTTCAGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 72 bp | GCTGGGAAAGAACTCACTGCCAGTGCGGCTCCCAACTaGAAAAGTTATCTGTGGCTTTGTAATACTGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: AGKELTASAAPN*KSYLWLCNTGR Trigger: CCTTCCAGTATTACAAAGCCACAGATAACTTTTCCAGTTGGGAGCCGCACTGGCAGTGAGTTCTTTCCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR TCA 72 bp | GAAGAAGCAGGCCTCCAGTTTCCGGTCAGAGGATACTaGGTAACAAGTCTCCCACTGGGAAAAACCGATTTT | + |
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Preference number: 3 (lower is better) Translates to: EEAGLQFPVRGY*VTSLPLGKTDF Trigger: AAAATCGGTTTTTCCCAGTGGGAGACTTGTTACTCAGTATCCTCTGACCGGAAACTGGAGGCCTGCTTCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 72 bp | AGTCACAGGTGTGGCAGAGGTAAGGGAGTAAGGTCATaGGCTGTAAACACAAAGTCGTTCTCAAGAGTTGGA | + |
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Preference number: 3 (lower is better) Translates to: SHRCGRGKGVRS*AVNTKSFSRVG Trigger: TCCAACTCTTGAGAACGACTTTGTGTTTACAGCCCATGACCTTACTCCCTTACCTCTGCCACACCTGTGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR-3UTR CAA 90 bp | AAGCGTTCAGCAGTATACTGTCAAGATGGGCTCTCGAACCCATCAGGAAGTATTAAAGAAGCACTGCCATaGAAAGTGATCCTTCACCTG | + |
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Preference number: 3 (lower is better) Translates to: KRSAVYCQDGLSNPSGSIKEALP*KVILHL Trigger: CAGGTGAAGGATCACTTTCAATGGCAGTGCTTCTTT...AATACTTCCTGATGGGTTCGAGAGCCCATCTTGACAGTATACTGCTGAACGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR TCA 72 bp | TCAGCTTCCCCTCCCACAAGTCCCAGCCCAACAAGTTaGAAGTGTCAGACTTACTACAATGGAATCATTAGT | + |
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Preference number: 3 (lower is better) Translates to: SASPPTSPSPTS*KCQTYYNGIIS Trigger: ACTAATGATTCCATTGTAGTAAGTCTGACACTTTCAACTTGTTGGGCTGGGACTTGTGGGAGGGGAAGCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 72 bp | GGAATCATTAGTTTACACACTGTACACTGTAAGGCTTaGAGTTATCCCCAAGGCCAAGCGTTGAGAACCTTC | + |
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Preference number: 3 (lower is better) Translates to: GIISLHTVHCKA*SYPQGQALRTF Trigger: GAAGGTTCTCAACGCTTGGCCTTGGGGATAACTCCAAGCCTTACAGTGTACAGTGTGTAAACTAATGATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 72 bp | ACTGCCAGTGCGGCTCCCAACTGGAAAAGTTATCTGTaGCTTTGTAATACTGGAAGGAAACAACCAAAGAGT | + |
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Preference number: 3 (lower is better) Translates to: TASAAPNWKSYL*LCNTGRKQPKS Trigger: ACTCTTTGGTTGTTTCCTTCCAGTATTACAAAGCCACAGATAACTTTTCCAGTTGGGAGCCGCACTGGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR TCA 72 bp | CCAAACTTAAGCTTAATATTAAGGTTATCTCGATCCTaGGAGAAGAAGCAGGCCTCCAGTTTCCGGTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: PNLSLILRLSRS*EKKQASSFRSE Trigger: CTCTGACCGGAAACTGGAGGCCTGCTTCTTCTCTCAGGATCGAGATAACCTTAATATTAAGCTTAAGTTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR TCA 72 bp | ACACAAAGTCGTTCTCAAGAGTTGGATACAGAACACTaGACAACAGAAAATACGGACTTAATCCTTATCCAA | + |
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Preference number: 3 (lower is better) Translates to: TQSRSQELDTEH*TTENTDLILIQ Trigger: TTGGATAAGGATTAAGTCCGTATTTTCTGTTGTTCAGTGTTCTGTATCCAACTCTTGAGAACGACTTTGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CCA 72 bp | GCTAAAGTAAACAAGATTTATGGTAGTCAAGCAGCCTaGAAAATCTCATCTCTCCTCAAAATTAGTACGTTT | + |
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Preference number: 3 (lower is better) Translates to: AKVNKIYGSQAA*KISSLLKISTF Trigger: AAACGTACTAATTTTGAGGAGAGATGAGATTTTCCAGGCTGCTTGACTACCATAAATCTTGTTTACTTTAGC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 72 bp | GGAAAGCGCTTCCCTCTGGGTGGAAGGCGCACACCCTaGAAGACAGTGGATGCTGGGAAAGAACTCACTGCC | + |
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Preference number: 4 (lower is better) Translates to: GKRFPLGGRRTP*KTVDAGKELTA Trigger: GGCAGTGAGTTCTTTCCCAGCATCCACTGTCTTCAAGGGTGTGCGCCTTCCACCCAGAGGGAAGCGCTTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 72 bp | CCAGATCAAACAAAAGCCAGAGAACCCACAACCGCATaGCATAGTCACAGGTGTGGCAGAGGTAAGGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: PDQTKAREPTTA*HSHRCGRGKGV Trigger: TACTCCCTTACCTCTGCCACACCTGTGACTATGCAATGCGGTTGTGGGTTCTCTGGCTTTTGTTTGATCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 72 bp | CACTGTAAGGCTTGGAGTTATCCCCAAGGCCAAGCGTaGAGAACCTTCCACCCACGTGAAAGTCTTTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: HCKAWSYPQGQA*RTFHPRESLCC Trigger: ACAACAAAGACTTTCACGTGGGTGGAAGGTTCTCAACGCTTGGCCTTGGGGATAACTCCAAGCCTTACAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS-3UTR GCA 90 bp | TTGCAGTTTATGAGTCTTGTGAAACACAAAGGAGGGGAGTGCCCTTCACCATATGTAGTCCTCCTGTTCTaGATCTTCCTCGCCATCCTC | + |
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Preference number: 4 (lower is better) Translates to: LQFMSLVKHKGGECPSPYVVLLF*IFLAIL Trigger: GAGGATGGCGAGGAAGATGCAGAACAGGAGGACTAC...ATATGGTGAAGGGCACTCCCCTCCTTTGTGTTTCACAAGACTCATAAACTGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS-3UTR CCA 90 bp | AGTCTTGTGAAACACAAAGGAGGGGAGTGCCCTTCACCATATCCACTCACACACCAGCTTTGCTCGGCTTaGATTTTGGATCCCCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: SLVKHKGGECPSPYPLTHQLCSA*ILDPLF Trigger: AAAAAGGGGATCCAAAATCCAAGCCGAGCAAAGCTG...GTGTGTGAGTGGATATGGTGAAGGGCACTCCCCTCCTTTGTGTTTCACAAGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS-3UTR GCA 90 bp | CACAGTACTACGTACAGAGCAAACAATTTACGACATGGTTGTTTCTGTAGCGTACCTTGGCTGCAGCTTTaGTCGGCTTGGATTTTGGAT | + |
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Preference number: 4 (lower is better) Translates to: HSTTYRANNLRHGCFCSVPWLQL*SAWILD Trigger: ATCCAAAATCCAAGCCGAGCAAAGCTGCAGCCAAGG...TACGCTACAGAAACAACCATGTCGTAAATTGTTTGCTCTGTACGTAGTACTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS-3UTR TCA 90 bp | GAAACACTTTATTCTAACAGGAGGACATCAGTGCTAATTAATATTTTAGCCACCTCCTTCTGTGAACACTaGACTGCCAGCCTCCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ETLYSNRRTSVLINILATSFCEH*TASLRK Trigger: CTTCCGGAGGCTGGCAGTTCAGTGTTCACAGAAGGA...GGTGGCTAAAATATTAATTAGCACTGATGTCCTCCTGTTAGAATAAAGTGTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161920.2 |
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| 3UTR CAA 72 bp | CGAACCCATCAGGAAGTATTTAAAGAAGCACTGCCATaGAAAGTGATCCTTCACCTGAGAAAAGACTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: RTHQEVFKEALP*KVILHLRKDFW Trigger: CCAAAAGTCTTTTCTCAGGTGAAGGATCACTTTCAATGGCAGTGCTTCTTTAAATACTTCCTGATGGGTTCG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 72 bp | GAAGGAAACAACCAAAGAGTGTCTACGAATGGAATCTaGTTTGGCCCCGGTATCAAACATAAGAGAATGAAG | + |
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Preference number: 4 (lower is better) Translates to: EGNNQRVSTNGI*FGPGIKHKRMK Trigger: CTTCATTCTCTTATGTTTGATACCGGGGCCAAACAAGATTCCATTCGTAGACACTCTTTGGTTGTTTCCTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| 3UTR CAA 72 bp | TTAATAAGTTCCCTAACACACTGCAGCTTTAAAGACTaGGTTTCCACTAGGAATCTCACAGCATCTTTATCA | + |
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Preference number: 4 (lower is better) Translates to: LISSLTHCSFKD*VSTRNLTASLS Trigger: TGATAAAGATGCTGTGAGATTCCTAGTGGAAACCAAGTCTTTAAAGCTGCAGTGTGTTAGGGAACTTATTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS TCA 90 bp | CACATGATCACAGGTCCCCGCATCCACTGCTCCTTCTGTGAACACTaGACTGCCAGCCTCCGGAAGGGCCTGACGCGCATGCGTACCTTG | + |
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Preference number: 5 (lower is better) Translates to: HMITGPRIHCSFCEH*TASLRKGLTRMRTL Trigger: CAAGGTACGCATGCGCGTCAGGCCCTTCCGGAGGCTGGCAGTTCAGTGTTCACAGAAGGAGCAGTGGATGCGGGGACCTGTGATCATGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161920.2 |
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| CDS-3UTR CAA 90 bp | AAACTGAAGTGGGTCTCACCCAGGTCACTGGTGCTTGCCGAGAACCTGTTTCCTGCCTTGGCTGCAGCTTaGCTCGGCTTGGATTTTGGA | + |
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Preference number: 5 (lower is better) Translates to: KLKWVSPRSLVLAENLFPALAAA*LGLDFG Trigger: TCCAAAATCCAAGCCGAGCAAAGCTGCAGCCAAGGC...AGGAAACAGGTTCTCGGCAAGCACCAGTGACCTGGGTGAGACCCACTTCAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS TCA 90 bp | ACTGCTCCTTCTGTGAACACTGAACTGCCAGCCTCCGGAAGGGCCTaGCGCGCATGCGTACCTTGTTTTTCTTCGGGTGGTTCAATAAAG | + |
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Preference number: 5 (lower is better) Translates to: TAPSVNTELPASGRA*RACVPCFSSGGSIK Trigger: CTTTATTGAACCACCCGAAGAAAAACAAGGTACGCATGCGCGTCAGGCCCTTCCGGAGGCTGGCAGTTCAGTGTTCACAGAAGGAGCAGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000161920.2 |
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| CDS-3UTR CAA 90 bp | TTTGTAATACTGGAAGGAAACAACCAAAGAGTGTCTACGAATGGAATCTTGTTTATGAGTGATGTAGCCTaGGCTGCAGCTTTGCTCGGC | + |
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Preference number: 5 (lower is better) Translates to: FVILEGNNQRVSTNGILFMSDVA*AAALLG Trigger: GCCGAGCAAAGCTGCAGCCAAGGCTACATCACTCAT...AAACAAGATTCCATTCGTAGACACTCTTTGGTTGTTTCCTTCCAGTATTACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS-3UTR CAA 90 bp | ACAGAAAATACGGACTTAATCCTTATCCAAAATAAAGTGGGTCCAAACGCTCGACCTTTCAATATCATCTaGTTTTTCTTCGGGTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: TENTDLILIQNKVGPNARPFNII*FFFGWF Trigger: GAACCACCCGAAGAAAAACAAGATGATATTGAAAGG...TCGAGCGTTTGGACCCACTTTATTTTGGATAAGGATTAAGTCCGTATTTTCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS-3UTR CAA 90 bp | TTTGTAATACTGGAAGGAAACAACCAAAGAGTGTCTACGAATGGAATCTTGTTTGTCATTCTCCTCTTCTaGTTCCTCTTCATCGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: FVILEGNNQRVSTNGILFVILLF*FLFIVV Trigger: GACTACGATGAAGAGGAACAAGAAGAGGAGAATGAC...AAACAAGATTCCATTCGTAGACACTCTTTGGTTGTTTCCTTCCAGTATTACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048993.12 |
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| CDS TCA 72 bp | ACAGGTCCCCGCATCCACTGCTCCTTCTGTGAACACTaGACTGCCAGCCTCCGGAAGGGCCTGACGCGCATG | + |
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Preference number: 6 (lower is better) Translates to: TGPRIHCSFCEH*TASLRKGLTRM Trigger: CATGCGCGTCAGGCCCTTCCGGAGGCTGGCAGTTCAGTGTTCACAGAAGGAGCAGTGGATGCGGGGACCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161920.2 |
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| CDS TCA 72 bp | CATGATCACAGGTCCCCGCATCCACTGCTCCTTCTGTaGACACTGAACTGCCAGCCTCCGGAAGGGCCTGAC | + |
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Preference number: 6 (lower is better) Translates to: HDHRSPHPLLLL*TLNCQPPEGPD Trigger: GTCAGGCCCTTCCGGAGGCTGGCAGTTCAGTGTTCACAGAAGGAGCAGTGGATGCGGGGACCTGTGATCATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161920.2 |
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