Pregenerated sensors for POLR3F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027427Ensembl transcript IDs: ENSMUST00000028914.9, ENSMUST00000110017.3
Found 107 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGAAACACGTCCTGTACAACAGCATTTGGGAGTGAGGTCGGTATaGAGGCACACTCCCCTGAAAGAGTCCTGGGGTGAAGAGCAACAG | + |
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Preference number: 1 (lower is better) Translates to: VETRPVQQHLGVRSV*RHTPLKESWGEEQQ Trigger: CTGTTGCTCTTCACCCCAGGACTCTTTCAGGGGAGTGTGCCTCCATACCGACCTCACTCCCAAATGCTGTTGTACAGGACGTGTTTCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 90 bp | AGGGTTTCTTTATGTAGCTCTGGCTGTCCTAGATCTGCCTGCCTCTaGCTCCTGGGTACTGGGATTAAAGGCTTTCCACTATACTCAGCT | + |
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Preference number: 1 (lower is better) Translates to: RVSLCSSGCPRSACL*LLGTGIKGFPLYSA Trigger: AGCTGAGTATAGTGGAAAGCCTTTAATCCCAGTACCCAGGAGGCAGAGGCAGGCAGATCTAGGACAGCCAGAGCTACATAAAGAAACCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 90 bp | CAAGATAGGGTTTCTTTATGTAGCTCTGGCTGTCCTAGATCTGCCTaGCTCTGCCTCCTGGGTACTGGGATTAAAGGCTTTCCACTATAC | + |
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Preference number: 1 (lower is better) Translates to: QDRVSLCSSGCPRSA*LCLLGTGIKGFPLY Trigger: GTATAGTGGAAAGCCTTTAATCCCAGTACCCAGGAGGCAGAGGCAGGCAGATCTAGGACAGCCAGAGCTACATAAAGAAACCCTATCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 90 bp | GCCCCCAAACATCTGTGCTTCATCTACTCTACATTCCCTCGACCTTaGCCTAAGACCAGCCAACACTTAACGTTTTACTGTCTTTCCTAC | + |
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Preference number: 1 (lower is better) Translates to: APKHLCFIYSTFPRP*PKTSQHLTFYCLSY Trigger: GTAGGAAAGACAGTAAAACGTTAAGTGTTGGCTGGTCTTAGGGCAAGGTCGAGGGAATGTAGAGTAGATGAAGCACAGATGTTTGGGGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR CCA 90 bp | GAGTTCAATGCCAGCCTGGGCCATCAAGTTTATTCCAGGCCAGTGTaGAGTGATGCTCTTATCTCTAACAACAAAACAGAATGCGGAGCA | + |
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Preference number: 1 (lower is better) Translates to: EFNASLGHQVYSRPV*SDALISNNKTECGA Trigger: TGCTCCGCATTCTGTTTTGTTGTTAGAGATAAGAGCATCACTCCACACTGGCCTGGAATAAACTTGATGGCCCAGGCTGGCATTGAACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CCA 90 bp | CAGGAGCAACATAGAGGCAGGATTCTGTTCAAGATGCTGTCTTACTaGATCATACTGCTAGAGGGCGCATATTTTGTATTCATCTCTCAC | + |
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Preference number: 1 (lower is better) Translates to: QEQHRGRILFKMLSY*IILLEGAYFVFISH Trigger: GTGAGAGATGAATACAAAATATGCGCCCTCTAGCAGTATGATCCAGTAAGACAGCATCTTGAACAGAATCCTGCCTCTATGTTGCTCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR TCA 90 bp | GTTTCAATAATTCCCAGGGGGAGAGTATGCAAGAGAGCTCTCTGTTaGGCTGTGCCGTCTAATATAAACAGTATGCACAGGCAACTAAAT | + |
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Preference number: 1 (lower is better) Translates to: VSIIPRGRVCKRALC*AVPSNINSMHRQLN Trigger: ATTTAGTTGCCTGTGCATACTGTTTATATTAGACGGCACAGCTCAACAGAGAGCTCTCTTGCATACTCTCCCCCTGGGAATTATTGAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 90 bp | TTATCTCAGTACTTGGTCAACATAGGCTTGCTGGCTTCTTTTCCTTaGCTTCCAGACCTTCAAGGTATTTTACTTACTGAAGAAGAGACT | + |
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Preference number: 1 (lower is better) Translates to: LSQYLVNIGLLASFP*LPDLQGILLTEEET Trigger: AGTCTCTTCTTCAGTAAGTAAAATACCTTGAAGGTCTGGAAGGCAAGGAAAAGAAGCCAGCAAGCCTATGTTGACCAAGTACTGAGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CCA 90 bp | ATTAGTAGTATGTGTGCTCAGGTGAACAAAAGGCCTAGTACTAAGTaGGAGAGTATGAAGAATCTGGGCTTCATCTGCAATTTGATTTTG | + |
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Preference number: 1 (lower is better) Translates to: ISSMCAQVNKRPSTK*ESMKNLGFICNLIL Trigger: CAAAATCAAATTGCAGATGAAGCCCAGATTCTTCATACTCTCCCACTTAGTACTAGGCCTTTTGTTCACCTGAGCACACATACTACTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR TCA 90 bp | CTAATTTCAAATTCAAGTAGACTCAAATTGGATTGTAGGCTTGACTaGATCACCGCTAAAAAGCCTGTTACATACACATACACACACACA | + |
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Preference number: 1 (lower is better) Translates to: LISNSSRLKLDCRLD*ITAKKPVTYTYTHT Trigger: TGTGTGTGTGTATGTGTATGTAACAGGCTTTTTAGCGGTGATTCAGTCAAGCCTACAATCCAATTTGAGTCTACTTGAATTTGAAATTAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR TCA 90 bp | GCAAAACAGTACCTGTCATATTCCAATCAACAAACACTTGTTGAGTaGGACAGTGTAATAGGAGAAACTGAGTTATCTCATACAACACAA | + |
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Preference number: 1 (lower is better) Translates to: AKQYLSYSNQQTLVE*DSVIGETELSHTTQ Trigger: TTGTGTTGTATGAGATAACTCAGTTTCTCCTATTACACTGTCTCACTCAACAAGTGTTTGTTGATTGGAATATGACAGGTACTGTTTTGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR-3UTR CCA 90 bp | ATGCCAGCCTGGGCCATCAAGTTTATTCCAGGCCAGTGTGGAGTGATGCTCTTACCTGCCTCTGCCTCCTaGGTACTGGGATTAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: MPAWAIKFIPGQCGVMLLPASAS*VLGLKA Trigger: AGCCTTTAATCCCAGTACCCAGGAGGCAGAGGCAGG...TAAGAGCATCACTCCACACTGGCCTGGAATAAACTTGATGGCCCAGGCTGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | AGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATGAAAGAGTCCTGGGGTaGAGAGCAACAGATGGCATG | + |
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Preference number: 2 (lower is better) Translates to: RSQVQIPATTWWLATICNERVLG*RATDGM Trigger: CATGCCATCTGTTGCTCTTCACCCCAGGACTCTTTC...ATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR GCA 90 bp | ATGCCAGCCTGGGCCATCAAGTTTATTCCAGGCCAGTGTGGAGTGATGCTCTTACTGGCTTCTTTTCCTTaGCTTCCAGACCTTCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: MPAWAIKFIPGQCGVMLLLASFP*LPDLQG Trigger: ACCTTGAAGGTCTGGAAGGCAAGGAAAAGAAGCCAG...TAAGAGCATCACTCCACACTGGCCTGGAATAAACTTGATGGCCCAGGCTGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CAA 90 bp | TCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTaGCAACCATCTGTAATGAAATCAGACGCCCTCTTCTGGAGTGTC | + |
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Preference number: 2 (lower is better) Translates to: SSEGPKFKSQQPHGG*QPSVMKSDALFWSV Trigger: GACACTCCAGAAGAGGGCGTCTGATTTCATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTCAGAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR GCA 90 bp | ACTGCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCTCAGCTGTTCCTGTCTaGACCACTTGTAATTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: TALLKVPSSNPSNHMVACSAVPV*TTCNFF Trigger: GAAGAAATTACAAGTGGTGCAGACAGGAACAGCTGA...GCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTCAGAAGAGCAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CAA 90 bp | GCAACTCTAGTGAACATCTTCTCGTTCCAGCCTTTATCTCAGTACTaGGTCAACATAGGCTTGCTGGCTTCTTTTCCTTGCCTTCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: ATLVNIFSFQPLSQY*VNIGLLASFPCLPD Trigger: GTCTGGAAGGCAAGGAAAAGAAGCCAGCAAGCCTATGTTGACCAAGTACTGAGATAAAGGCTGGAACGAGAAGATGTTCACTAGAGTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR CCA 90 bp | ACTGCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCGTCACACTACAGGCATaGAATGAGAATCTGGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: TALLKVPSSNPSNHMVACVTLQA*NENLEK Trigger: TTTTTCCAGATTCTCATTCCATGCCTGTAGTGTGAC...GCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTCAGAAGAGCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | TGTCTCCCTTCTTTATGGATCACTTTTAAACGGGGTCCTCAACAGATTAGTAGTAGGCAGGCAGATCCCTaGGTTTGGTCTACAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: CLPSLWITFKRGPQQISSRQADP*VWSTEF Trigger: GAACTCTGTAGACCAAACTCAGGGATCTGCCTGCCT...ACTACTAATCTGTTGAGGACCCCGTTTAAAAGTGATCCATAAAGAAGGGAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | CCTCTTCTGGAGTGTCTGAAGACAACTACAGTGTACTTACAGATAAATAAATCTAAAGGAATGCCCACTTaGCTACCCAGGCCCCAAGAT | + |
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Preference number: 2 (lower is better) Translates to: PLLECLKTTTVYLQINKSKGMPT*LPRPQD Trigger: ATCTTGGGGCCTGGGTAGTCAAGTGGGCATTCCTTT...AGATTTATTTATCTGTAAGTACACTGTAGTTGTCTTCAGACACTCCAGAAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | ATCTACTCTACATTCCCTCGACCTTGCCCTAAGACCAGCCAACACTTAACGTTTTCAACAAACACTTGTTaGGTGAGACAGTGTAATAGG | + |
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Preference number: 2 (lower is better) Translates to: IYSTFPRPCPKTSQHLTFSTNTC*VRQCNR Trigger: CCTATTACACTGTCTCACTCAACAAGTGTTTGTTGA...AAACGTTAAGTGTTGGCTGGTCTTAGGGCAAGGTCGAGGGAATGTAGAGTAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR CAA 90 bp | AACAGTATGCACAGGCAACTAAATAAAAACTTAGCTCTTAATCATTaGTGTCAAGTGCTGGCCAGCCATCTGGCTGAAGGTTACTGGACT | + |
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Preference number: 2 (lower is better) Translates to: NSMHRQLNKNLALNH*CQVLASHLAEGYWT Trigger: AGTCCAGTAACCTTCAGCCAGATGGCTGGCCAGCACTTGACACAAATGATTAAGAGCTAAGTTTTTATTTAGTTGCCTGTGCATACTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | TGTCTCCCTTCTTTATGGATCACTTTTAAACGGGGTCCTCAACAGATTAGTAGTCTCTTCTGGAGTGTCTaGAGACAACTACAGTGTACT | + |
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Preference number: 2 (lower is better) Translates to: CLPSLWITFKRGPQQISSLFWSV*RQLQCT Trigger: AGTACACTGTAGTTGTCTTCAGACACTCCAGAAGAG...ACTACTAATCTGTTGAGGACCCCGTTTAAAAGTGATCCATAAAGAAGGGAGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR CCA 90 bp | GCTGTGCCGTCTAATATAAACAGTATGCACAGGCAACTAAATAAAAACTTAGCTATTTGTGTCAAGTGCTaGCCAGCCATCTGGCTGAAG | + |
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Preference number: 2 (lower is better) Translates to: AVPSNINSMHRQLNKNLAICVKC*PAIWLK Trigger: CTTCAGCCAGATGGCTGGCCAGCACTTGACACAAAT...AGCTAAGTTTTTATTTAGTTGCCTGTGCATACTGTTTATATTAGACGGCACAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR CCA 90 bp | ATCTACTCTACATTCCCTCGACCTTGCCCTAAGACCAGCCAACACTTAACGTTTCATTTCCTGGAATCTTaGTGTGGTTTTGTTTTGTTT | + |
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Preference number: 2 (lower is better) Translates to: IYSTFPRPCPKTSQHLTFHFLES*CGFVLF Trigger: AAACAAAACAAAACCACACCAAGATTCCAGGAAATG...AAACGTTAAGTGTTGGCTGGTCTTAGGGCAAGGTCGAGGGAATGTAGAGTAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAATGGAAACACAAATTTGGTGTAAGAGACACAGGCAGGGATCTTTCTCTTCAGAACCTAAAACCTaGAGAAACCAAACCAAACAC | + |
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Preference number: 2 (lower is better) Translates to: REMETQIWCKRHRQGSFSSEPKT*RNQTKH Trigger: GTGTTTGGTTTGGTTTCTTCAGGTTTTAGGTTCTGA...AGAGAAAGATCCCTGCCTGTGTCTCTTACACCAAATTTGTGTTTCCATTTCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR-3UTR CCA 90 bp | GCTGTGCCGTCTAATATAAACAGTATGCACAGGCAACTAAATAAAAACTTAGCTGTGAAGAGCAACAGATaGCATGAAAAAGGAATGCCC | + |
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Preference number: 2 (lower is better) Translates to: AVPSNINSMHRQLNKNLAVKSNR*HEKGMP Trigger: GGGCATTCCTTTTTCATGCCATCTGTTGCTCTTCAC...AGCTAAGTTTTTATTTAGTTGCCTGTGCATACTGTTTATATTAGACGGCACAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAATGGAAACACAAATTTGGTGTAAGAGACACAGGCAGGGATCTTTCTCTCTTTGTCATTCTAACTaGACATTTCCTGGAATCTTG | + |
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Preference number: 2 (lower is better) Translates to: REMETQIWCKRHRQGSFSLCHSN*TFPGIL Trigger: CAAGATTCCAGGAAATGTTCAGTTAGAATGACAAAG...AGAGAAAGATCCCTGCCTGTGTCTCTTACACCAAATTTGTGTTTCCATTTCTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR-3UTR CCA 90 bp | GCTTCTTTTCCTTGCCTTCCAGACCTTCAAGGTATTTTACTTACTGAAGAAGAGATTGTTTGTTCTCCATaGAGTTCAGTTTGCCAAATG | + |
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Preference number: 2 (lower is better) Translates to: ASFPCLPDLQGILLTEEEIVCSP*SSVCQM Trigger: CATTTGGCAAACTGAACTCCATGGAGAACAAACAAT...CTCTTCTTCAGTAAGTAAAATACCTTGAAGGTCTGGAAGGCAAGGAAAAGAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR TCA 90 bp | CCTCTTCTGGAGTGTCTGAAGACAACTACAGTGTACTTACAGATAAATAAATCTATTTACACTCCATCATaGATTGTTTGTTCTCCATGG | + |
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Preference number: 2 (lower is better) Translates to: PLLECLKTTTVYLQINKSIYTPS*IVCSPW Trigger: CCATGGAGAACAAACAATTCATGATGGAGTGTAAAT...AGATTTATTTATCTGTAAGTACACTGTAGTTGTCTTCAGACACTCCAGAAGAGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CAA 90 bp | TGTGAAGTATGCTTTCAAAGAAATTTACACTCCATCATGAATTGTTaGTTCTCCATGGAGTTCAGTTTGCCAAATGTAGATAAAGTGCAC | + |
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Preference number: 2 (lower is better) Translates to: CEVCFQRNLHSIMNC*FSMEFSLPNVDKVH Trigger: GTGCACTTTATCTACATTTGGCAAACTGAACTCCATGGAGAACAAACAATTCATGATGGAGTGTAAATTTCTTTGAAAGCATACTTCACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 72 bp | GGCCAACAACACAGCCAGCTGGGCGGCCTAGTGAACTaGACAGTGGATCCCAGAAAGCCAGCTACTCACTGC | + |
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Preference number: 3 (lower is better) Translates to: GQQHSQLGGLVN*TVDPRKPATHC Trigger: GCAGTGAGTAGCTGGCTTTCTGGGATCCACTGTGCAGTTCACTAGGCCGCCCAGCTGGCTGTGTTGTTGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR CCA 72 bp | CGTCCTGTACAACAGCATTTGGGAGTGAGGTCGGTATaGAGGCACACTCCCCTGAAAGAGTCCTGGGGTGAA | + |
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Preference number: 3 (lower is better) Translates to: RPVQQHLGVRSV*RHTPLKESWGE Trigger: TTCACCCCAGGACTCTTTCAGGGGAGTGTGCCTCCATACCGACCTCACTCCCAAATGCTGTTGTACAGGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CCA 72 bp | GCCAGGTGCGGGTATCGCATCTTTAATCATAGTCCTTaGGCAGTAGAGGCAGGCAGATCCCTGAGTTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: ARCGYRIFNHSP*AVEAGRSLSLV Trigger: GACCAAACTCAGGGATCTGCCTGCCTCTACTGCCCAAGGACTATGATTAAAGATGCGATACCCGCACCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CCA 72 bp | GCTCTGGCTGTCCTAGATCTGCCTGCCTCTGCCTCCTaGGTACTGGGATTAAAGGCTTTCCACTATACTCAG | + |
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Preference number: 3 (lower is better) Translates to: ALAVLDLPASAS*VLGLKAFHYTQ Trigger: CTGAGTATAGTGGAAAGCCTTTAATCCCAGTACCCAGGAGGCAGAGGCAGGCAGATCTAGGACAGCCAGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR CAA 90 bp | ATGCCAGCCTGGGCCATCAAGTTTATTCCAGGCCAGTGTGGAGTGATGCTCTTAGGCAGATCCCTGAGTTaGGTCTACAGAGTTCTAGGA | + |
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Preference number: 3 (lower is better) Translates to: MPAWAIKFIPGQCGVMLLGRSLS*VYRVLG Trigger: TCCTAGAACTCTGTAGACCAAACTCAGGGATCTGCC...TAAGAGCATCACTCCACACTGGCCTGGAATAAACTTGATGGCCCAGGCTGGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 72 bp | TTATGTAGCTCTGGCTGTCCTAGATCTGCCTGCCTCTaGCTCCTGGGTACTGGGATTAAAGGCTTTCCACTA | + |
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Preference number: 3 (lower is better) Translates to: LCSSGCPRSACL*LLGTGIKGFPL Trigger: TAGTGGAAAGCCTTTAATCCCAGTACCCAGGAGGCAGAGGCAGGCAGATCTAGGACAGCCAGAGCTACATAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR CAA 90 bp | AGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATGCTGGCTTCTTTTCCTaGCCTTCCAGACCTTCAAGG | + |
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Preference number: 3 (lower is better) Translates to: RSQVQIPATTWWLATICNAGFFS*PSRPSR Trigger: CCTTGAAGGTCTGGAAGGCAAGGAAAAGAAGCCAGC...ATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 72 bp | GTTTCTTTATGTAGCTCTGGCTGTCCTAGATCTGCCTaGCTCTGCCTCCTGGGTACTGGGATTAAAGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: VSLCSSGCPRSA*LCLLGTGIKGF Trigger: AAAGCCTTTAATCCCAGTACCCAGGAGGCAGAGGCAGGCAGATCTAGGACAGCCAGAGCTACATAAAGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR-3UTR CAA 90 bp | ATCTACTCTACATTCCCTCGACCTTGCCCTAAGACCAGCCAACACTTAACGTTTGAGCAGAGGACAAAGTaGGGAACAGGCGAGATATCA | + |
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Preference number: 3 (lower is better) Translates to: IYSTFPRPCPKTSQHLTFEQRTK*GTGEIS Trigger: TGATATCTCGCCTGTTCCCAACTTTGTCCTCTGCTC...AAACGTTAAGTGTTGGCTGGTCTTAGGGCAAGGTCGAGGGAATGTAGAGTAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR TCA 72 bp | AACTTAAAGGGTTTGCACTGGGATCCTCTGTGGAGCTaGGTTCTACCACCTTCTGACAGTGCTCTAAGTGAA | + |
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Preference number: 3 (lower is better) Translates to: NLKGLHWDPLWS*VLPPSDSALSE Trigger: TTCACTTAGAGCACTGTCAGAAGGTGGTAGAACTCAGCTCCACAGAGGATCCCAGTGCAAACCCTTTAAGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR CCA 72 bp | GCCAGCCTGGGCCATCAAGTTTATTCCAGGCCAGTGTaGAGTGATGCTCTTATCTCTAACAACAAAACAGAA | + |
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Preference number: 3 (lower is better) Translates to: ASLGHQVYSRPV*SDALISNNKTE Trigger: TTCTGTTTTGTTGTTAGAGATAAGAGCATCACTCCACACTGGCCTGGAATAAACTTGATGGCCCAGGCTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR TCA 72 bp | GGAATCCCAGCACTTGGAAAGCTAAAGCAGAATAACTaGGTTCAATGCCAGCCTGGGCCATCAAGTTTATTC | + |
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Preference number: 3 (lower is better) Translates to: GIPALGKLKQNN*VQCQPGPSSLF Trigger: GAATAAACTTGATGGCCCAGGCTGGCATTGAACTCAGTTATTCTGCTTTAGCTTTCCAAGTGCTGGGATTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 72 bp | CCCAAGATGGCACACATGCCATCAGCTGTTCCTGTCTaGACCACTTGTAATTTCTTCTCAACAAAACCCAAA | + |
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Preference number: 3 (lower is better) Translates to: PKMAHMPSAVPV*TTCNFFSTKPK Trigger: TTTGGGTTTTGTTGAGAAGAAATTACAAGTGGTGCAGACAGGAACAGCTGATGGCATGTGTGCCATCTTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 72 bp | GCTATTTGTCCAGATGTGGCACATACCTATAAACCCTaGAGGAGCAACATAGAGGCAGGATTCTGTTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: AICPDVAHTYKP*RSNIEAGFCSR Trigger: TCTTGAACAGAATCCTGCCTCTATGTTGCTCCTGCAGGGTTTATAGGTATGTGCCACATCTGGACAAATAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| 3UTR GCA 72 bp | AAAGTTGGGAACAGGCGAGATATCAAGAGTCCAGTATaGAGCAAGTTAAAGTCAGCACAACAGGGGCTACAT | + |
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Preference number: 3 (lower is better) Translates to: KVGNRRDIKSPV*SKLKSAQQGLH Trigger: ATGTAGCCCCTGTTGTGCTGACTTTAACTTGCTGCATACTGGACTCTTGATATCTCGCCTGTTCCCAACTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR GCA 72 bp | CATCTGTGCTTCATCTACTCTACATTCCCTCGACCTTaGCCTAAGACCAGCCAACACTTAACGTTTTACTGT | + |
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Preference number: 3 (lower is better) Translates to: HLCFIYSTFPRP*PKTSQHLTFYC Trigger: ACAGTAAAACGTTAAGTGTTGGCTGGTCTTAGGGCAAGGTCGAGGGAATGTAGAGTAGATGAAGCACAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
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| 3UTR-3UTR CAA 90 bp | CAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATGAAATCCCTTTATCTCAGTACTaGGTCAACATAGGCTTGCTG | + |
|
Preference number: 3 (lower is better) Translates to: QVQIPATTWWLATICNEIPLSQY*VNIGLL Trigger: CAGCAAGCCTATGTTGACCAAGTACTGAGATAAAGG...GATTTCATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CCA 72 bp | ATGTGTGCTCAGGTGAACAAAAGGCCTAGTACTAAGTaGGAGAGTATGAAGAATCTGGGCTTCATCTGCAAT | + |
|
Preference number: 3 (lower is better) Translates to: MCAQVNKRPSTK*ESMKNLGFICN Trigger: ATTGCAGATGAAGCCCAGATTCTTCATACTCTCCCACTTAGTACTAGGCCTTTTGTTCACCTGAGCACACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CCA 72 bp | CATAGAGGCAGGATTCTGTTCAAGATGCTGTCTTACTaGATCATACTGCTAGAGGGCGCATATTTTGTATTC | + |
|
Preference number: 3 (lower is better) Translates to: HRGRILFKMLSY*IILLEGAYFVF Trigger: GAATACAAAATATGCGCCCTCTAGCAGTATGATCCAGTAAGACAGCATCTTGAACAGAATCCTGCCTCTATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR-3UTR CAA 90 bp | AGAGAAATGGAAACACAAATTTGGTGTAAGAGACACAGGCAGGGATCTTTCTCTAACGGCAAGTTACTTTaGTACCGAATATCTCTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: REMETQIWCKRHRQGSFSNGKLL*YRISLL Trigger: GAGCAGAGATATTCGGTACAAAAGTAACTTGCCGTT...AGAGAAAGATCCCTGCCTGTGTCTCTTACACCAAATTTGTGTTTCCATTTCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| 3UTR TCA 72 bp | AATTCAAGTAGACTCAAATTGGATTGTAGGCTTGACTaGATCACCGCTAAAAAGCCTGTTACATACACATAC | + |
|
Preference number: 3 (lower is better) Translates to: NSSRLKLDCRLD*ITAKKPVTYTY Trigger: GTATGTGTATGTAACAGGCTTTTTAGCGGTGATTCAGTCAAGCCTACAATCCAATTTGAGTCTACTTGAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR TCA 72 bp | AGGAGTATTCGATCACTGTCCATCACAGAATTGATATaGCTACTTTGCTTAATTACCACCAAAACCCTTATT | + |
|
Preference number: 3 (lower is better) Translates to: RSIRSLSITELI*LLCLITTKTLI Trigger: AATAAGGGTTTTGGTGGTAATTAAGCAAAGTAGTCATATCAATTCTGTGATGGACAGTGATCGAATACTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR GCA 72 bp | GATCTTTCTCTGACTTGTTCATTAACATACTCCAAGTaGAAAACAGTACCTGTCATATTCCAATCAACAAAC | + |
|
Preference number: 3 (lower is better) Translates to: DLSLTCSLTYSK*KTVPVIFQSTN Trigger: GTTTGTTGATTGGAATATGACAGGTACTGTTTTGCACTTGGAGTATGTTAATGAACAAGTCAGAGAAAGATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR GCA 90 bp | GCTCCAGACTCTCTTTTCCATAGAGCAGAGGACAAAGTTGGGAACAGGCGAGATTCCGCGTCCGGCGGCTaGACCTTGACCTTCACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: APDSLFHRAEDKVGNRRDSASGG*TLTFTS Trigger: GGAGGTGAAGGTCAAGGTGCAGCCGCCGGACGCGGA...ATCTCGCCTGTTCCCAACTTTGTCCTCTGCTCTATGGAAAAGAGAGTCTGGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR CCA 90 bp | ACTGCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCTGTAGGTGGGAGGATTaGGTTGACTGCCCTGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: TALLKVPSSNPSNHMVACCRWED*VDCPVQ Trigger: CTGTACAGGGCAGTCAACCCAATCCTCCCACCTACA...GCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTCAGAAGAGCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CCA 90 bp | ATGCCAGCCTGGGCCATCAAGTTTATTCCAGGCCAGTGTGGAGTGATGCTCTTAATCTCACCACCTTCATaGCAGTCCTCAAAAACGGGG | + |
|
Preference number: 4 (lower is better) Translates to: MPAWAIKFIPGQCGVMLLISPPS*QSSKTG Trigger: CCCCGTTTTTGAGGACTGCCATGAAGGTGGTGAGAT...TAAGAGCATCACTCCACACTGGCCTGGAATAAACTTGATGGCCCAGGCTGGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CAA 72 bp | AGTCCTTGGGCAGTAGAGGCAGGCAGATCCCTGAGTTaGGTCTACAGAGTTCTAGGACAGTCAGAGCTACAT | + |
|
Preference number: 4 (lower is better) Translates to: SPWAVEAGRSLS*VYRVLGQSELH Trigger: ATGTAGCTCTGACTGTCCTAGAACTCTGTAGACCAAACTCAGGGATCTGCCTGCCTCTACTGCCCAAGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR TCA 90 bp | AGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATTGGATAACAGTCTATTaGTGGCCACTGCCCGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: RSQVQIPATTWWLATICNWITVY*WPLPAA Trigger: AGCAGCGGGCAGTGGCCATCAATAGACTGTTATCCA...ATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | AGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATTCTATTGATGGCCACTaGCCGCTGCTGGGCTTCAAT | + |
|
Preference number: 4 (lower is better) Translates to: RSQVQIPATTWWLATICNSIDGH*PLLGFN Trigger: ATTGAAGCCCAGCAGCGGGCAGTGGCCATCAATAGA...ATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | ACTGCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCGAGGATTGGGTTGACTaGCCTGTACAGTTTCATGTG | + |
|
Preference number: 4 (lower is better) Translates to: TALLKVPSSNPSNHMVACEDWVD*PVQFHV Trigger: CACATGAAACTGTACAGGGCAGTCAACCCAATCCTC...GCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTCAGAAGAGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CCA 90 bp | ACTGCTCTTCTGAAGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCTCAGATTCAAAATCCTaGTCACTGTACCAGGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: TALLKVPSSNPSNHMVACSDSKS*SLYQAP Trigger: CGGTGCCTGGTACAGTGACCAGGATTTTGAATCTGA...GCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCTTCAGAAGAGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CAA 72 bp | GGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTaGCAACCATCTGTAATGAAATCAGACGCCCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GPKFKSQQPHGG*QPSVMKSDALF Trigger: GAAGAGGGCGTCTGATTTCATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR TCA 90 bp | TCCAGGCCAGTGTGGAGTGATGCTCTTATCTCTAACAACAAAACAGAATGCGGAGTGGGAGGATTGGGTTaGCTGCCCTGTACAGTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: SRPVWSDALISNNKTECGVGGLG*LPCTVS Trigger: TGAAACTGTACAGGGCAGTCAACCCAATCCTCCCAC...TCCGCATTCTGTTTTGTTGTTAGAGATAAGAGCATCACTCCACACTGGCCTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | TTTACACTCCATCATGAATTGTTTGTTCTCCATGGAGTTCAGTTTGCCAAATGTTCCGCGTCCGGCGGCTaGACCTTGACCTTCACCTCC | + |
|
Preference number: 4 (lower is better) Translates to: FTLHHELFVLHGVQFAKCSASGG*TLTFTS Trigger: GGAGGTGAAGGTCAAGGTGCAGCCGCCGGACGCGGA...ACATTTGGCAAACTGAACTCCATGGAGAACAAACAATTCATGATGGAGTGTAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | GCTGTGCCGTCTAATATAAACAGTATGCACAGGCAACTAAATAAAAACTTAGCTGCAGAGTCCACAGGGTaGCCGGACCACGCCTGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: AVPSNINSMHRQLNKNLAAESTG*PDHACR Trigger: CCTACAGGCGTGGTCCGGGCACCCTGTGGACTCTGC...AGCTAAGTTTTTATTTAGTTGCCTGTGCATACTGTTTATATTAGACGGCACAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR TCA 90 bp | TCCAGGCCAGTGTGGAGTGATGCTCTTATCTCTAACAACAAAACAGAATGCGGAACAACTCTACCTTGCTaGTGCCCAGCTCACAGATGT | + |
|
Preference number: 4 (lower is better) Translates to: SRPVWSDALISNNKTECGTTLPC*CPAHRC Trigger: ACATCTGTGAGCTGGGCATCAGCAAGGTAGAGTTGT...TCCGCATTCTGTTTTGTTGTTAGAGATAAGAGCATCACTCCACACTGGCCTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | CAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATGAAATCTGTGTCCATCTACGCTaGCAACAGTGCCTTCCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: QVQIPATTWWLATICNEICVHLR*QQCLPS Trigger: CGAAGGAAGGCACTGTTGGCAGCGTAGATGGACACA...GATTTCATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR TCA 90 bp | GCTCCAGACTCTCTTTTCCATAGAGCAGAGGACAAAGTTGGGAACAGGCGAGATGAATTACTTGATCTGTaGTTCCATGAGGGAACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: APDSLFHRAEDKVGNRRDELLDL*FHEGTG Trigger: ACCAGTTCCCTCATGGAATCACAGATCAAGTAATTC...ATCTCGCCTGTTCCCAACTTTGTCCTCTGCTCTATGGAAAAGAGAGTCTGGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR CCA 90 bp | TCCAGGCCAGTGTGGAGTGATGCTCTTATCTCTAACAACAAAACAGAATGCGGAAGTCACAGATCGGTCTaGCTGCAGGTTATAGAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: SRPVWSDALISNNKTECGSHRSV*LQVIEH Trigger: ATGCTCTATAACCTGCAGCCAGACCGATCTGTGACT...TCCGCATTCTGTTTTGTTGTTAGAGATAAGAGCATCACTCCACACTGGCCTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR TCA 90 bp | CACAAATTTGGTGTAAGAGACACAGGCAGGGATCTTTCTCTGACTTGTTCATTATGGATAACAGTCTATTaGTGGCCACTGCCCGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: HKFGVRDTGRDLSLTCSLWITVY*WPLPAA Trigger: AGCAGCGGGCAGTGGCCATCAATAGACTGTTATCCA...TAATGAACAAGTCAGAGAAAGATCCCTGCCTGTGTCTCTTACACCAAATTTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| 3UTR CAA 72 bp | GTGAACATCTTCTCGTTCCAGCCTTTATCTCAGTACTaGGTCAACATAGGCTTGCTGGCTTCTTTTCCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: VNIFSFQPLSQY*VNIGLLASFPC Trigger: GCAAGGAAAAGAAGCCAGCAAGCCTATGTTGACCAAGTACTGAGATAAAGGCTGGAACGAGAAGATGTTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR TCA 90 bp | AGGTCCCAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATTCCCTGCATCCTCTATaGTTTGATAGACCAGTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: RSQVQIPATTWWLATICNSLHPL*FDRPVF Trigger: AAAAACTGGTCTATCAAATCATAGAGGATGCAGGGA...ATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTGGGACCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CAA 72 bp | CACAGGCAACTAAATAAAAACTTAGCTCTTAATCATTaGTGTCAAGTGCTGGCCAGCCATCTGGCTGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: HRQLNKNLALNH*CQVLASHLAEG Trigger: ACCTTCAGCCAGATGGCTGGCCAGCACTTGACACAAATGATTAAGAGCTAAGTTTTTATTTAGTTGCCTGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CAA 72 bp | TGGTGTAAGAGACACAGGCAGGGATCTTTCTCTGACTaGTTCATTAACATACTCCAAGTGCAAAACAGTACC | + |
|
Preference number: 4 (lower is better) Translates to: WCKRHRQGSFSD*FINILQVQNST Trigger: GGTACTGTTTTGCACTTGGAGTATGTTAATGAACAAGTCAGAGAAAGATCCCTGCCTGTGTCTCTTACACCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR GCA 90 bp | TTGATTTCTGTTAACGGCAAGTTACTTTTGTACCGAATATCTCTGCTCCATATTTCTATTGATGGCCACTaGCCGCTGCTGGGCTTCAAT | + |
|
Preference number: 4 (lower is better) Translates to: LISVNGKLLLYRISLLHISIDGH*PLLGFN Trigger: ATTGAAGCCCAGCAGCGGGCAGTGGCCATCAATAGA...AATATGGAGCAGAGATATTCGGTACAAAAGTAACTTGCCGTTAACAGAAATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR TCA 90 bp | TTTACACTCCATCATGAATTGTTTGTTCTCCATGGAGTTCAGTTTGCCAAATGTGAATTACTTGATCTGTaGTTCCATGAGGGAACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: FTLHHELFVLHGVQFAKCELLDL*FHEGTG Trigger: ACCAGTTCCCTCATGGAATCACAGATCAAGTAATTC...ACATTTGGCAAACTGAACTCCATGGAGAACAAACAATTCATGATGGAGTGTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | TGTCTCCCTTCTTTATGGATCACTTTTAAACGGGGTCCTCAACAGATTAGTAGTTGTACCGAATATCTCTaGTCCATATTCCTTTATTCC | + |
|
Preference number: 4 (lower is better) Translates to: CLPSLWITFKRGPQQISSCTEYL*SIFLYS Trigger: GGAATAAAGGAATATGGAGCAGAGATATTCGGTACA...ACTACTAATCTGTTGAGGACCCCGTTTAAAAGTGATCCATAAAGAAGGGAGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR GCA 90 bp | GCTGTGCCGTCTAATATAAACAGTATGCACAGGCAACTAAATAAAAACTTAGCTCTTCTTTTTGGAAGCTaGTACAGACTTCACGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: AVPSNINSMHRQLNKNLALLFGS*YRLHGF Trigger: AAAGCCGTGAAGTCTGTAGCAGCTTCCAAAAAGAAG...AGCTAAGTTTTTATTTAGTTGCCTGTGCATACTGTTTATATTAGACGGCACAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CCA 90 bp | TGTCTCCCTTCTTTATGGATCACTTTTAAACGGGGTCCTCAACAGATTAGTAGTTATAAACCTTCTTTTTaGAAGCTGCTACAGACTTCA | + |
|
Preference number: 4 (lower is better) Translates to: CLPSLWITFKRGPQQISSYKPSF*KLLQTS Trigger: TGAAGTCTGTAGCAGCTTCCAAAAAGAAGGTTTATA...ACTACTAATCTGTTGAGGACCCCGTTTAAAAGTGATCCATAAAGAAGGGAGACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CAA 72 bp | AGTATGCTTTCAAAGAAATTTACACTCCATCATGAATaGTTTGTTCTCCATGGAGTTCAGTTTGCCAAATGT | + |
|
Preference number: 4 (lower is better) Translates to: SMLSKKFTLHHE*FVLHGVQFAKC Trigger: ACATTTGGCAAACTGAACTCCATGGAGAACAAACAATTCATGATGGAGTGTAAATTTCTTTGAAAGCATACT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| 3UTR CAA 72 bp | AGAATTTTGTTGATTTCTGTTAACGGCAAGTTACTTTaGTACCGAATATCTCTGCTCCATATTCCTGTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: RILLISVNGKLL*YRISLLHIPVR Trigger: TCTTACAGGAATATGGAGCAGAGATATTCGGTACAAAAGTAACTTGCCGTTAACAGAAATCAACAAAATTCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS GCA 90 bp | ACCACCTTCATGGCAGTCCTCAAAAACGGGGCAGAGTCCACAGGGTaGCCGGACCACGCCTGTAGGTGGGAGGATTGGGTTGACTGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: TTFMAVLKNGAESTG*PDHACRWEDWVDCP Trigger: AGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGTGGACTCTGCCCCGTTTTTGAGGACTGCCATGAAGGTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS CCA 90 bp | GCAGAGTCCACAGGGTGCCCGGACCACGCCTGTAGGTGGGAGGATTaGGTTGACTGCCCTGTACAGTTTCATGTGTCCATCTACGCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: AESTGCPDHACRWED*VDCPVQFHVSIYAA Trigger: GGCAGCGTAGATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGTGGACTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS GCA 90 bp | ACAGGGTGCCCGGACCACGCCTGTAGGTGGGAGGATTGGGTTGACTaGCCTGTACAGTTTCATGTGTCCATCTACGCTGCCAACAGTGCC | + |
|
Preference number: 5 (lower is better) Translates to: TGCPDHACRWEDWVD*PVQFHVSIYAANSA Trigger: GGCACTGTTGGCAGCGTAGATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS CCA 90 bp | AAAAACGGGGCAGAGTCCACAGGGTGCCCGGACCACGCCTGTAGGTaGGAGGATTGGGTTGACTGCCCTGTACAGTTTCATGTGTCCATC | + |
|
Preference number: 5 (lower is better) Translates to: KNGAESTGCPDHACR*EDWVDCPVQFHVSI Trigger: GATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGTGGACTCTGCCCCGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CAA 90 bp | CAGGCGAGATATCAAGAGTCCAGTATGCAGCAAGTTAAAGTCAGCACAACAGGGCAGACCATGCTGGCCTaGAACTCAGAGATCCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: QARYQESSMQQVKVSTTGQTMLA*NSEIHL Trigger: CAGGTGGATCTCTGAGTTCAAGGCCAGCATGGTCTG...CCCTGTTGTGCTGACTTTAACTTGCTGCATACTGGACTCTTGATATCTCGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR CAA 90 bp | ATCTACTCTACATTCCCTCGACCTTGCCCTAAGACCAGCCAACACTTAACGTTTATGGATAACAGTCTATaGATGGCCACTGCCCGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: IYSTFPRPCPKTSQHLTFMDNSL*MATARC Trigger: GCAGCGGGCAGTGGCCATCAATAGACTGTTATCCAT...AAACGTTAAGTGTTGGCTGGTCTTAGGGCAAGGTCGAGGGAATGTAGAGTAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR CAA 90 bp | CAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATGAAATCATGGATAACAGTCTATaGATGGCCACTGCCCGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: QVQIPATTWWLATICNEIMDNSL*MATARC Trigger: GCAGCGGGCAGTGGCCATCAATAGACTGTTATCCAT...GATTTCATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CAA 90 bp | TGTCTCCCTTCTTTATGGATCACTTTTAAACGGGGTCCTCAACAGATTAGTAGTATGGACAACTCTACCTaGCTGATGCCCAGCTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: CLPSLWITFKRGPQQISSMDNST*LMPSSQ Trigger: CTGTGAGCTGGGCATCAGCAAGGTAGAGTTGTCCAT...ACTACTAATCTGTTGAGGACCCCGTTTAAAAGTGATCCATAAAGAAGGGAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CAA 90 bp | CAGGCGAGATATCAAGAGTCCAGTATGCAGCAAGTTAAAGTCAGCACAACAGGGTTCGTTCTGAATTACTaGATCTGTGATTCCATGAGG | + |
|
Preference number: 5 (lower is better) Translates to: QARYQESSMQQVKVSTTGFVLNY*ICDSMR Trigger: CCTCATGGAATCACAGATCAAGTAATTCAGAACGAA...CCCTGTTGTGCTGACTTTAACTTGCTGCATACTGGACTCTTGATATCTCGCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110017.3 |
||
| CDS-3UTR CAA 90 bp | CCTCTTCTGGAGTGTCTGAAGACAACTACAGTGTACTTACAGATAAATAAATCTGGTGGGAGGATTGGGTaGACTGCCCTGTACAGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: PLLECLKTTTVYLQINKSGGRIG*TALYSF Trigger: GAAACTGTACAGGGCAGTCAACCCAATCCTCCCACC...AGATTTATTTATCTGTAAGTACACTGTAGTTGTCTTCAGACACTCCAGAAGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CAA 90 bp | CAAGTTCAAATCCCAGCAACCACATGGTGGCTTGCAACCATCTGTAATGAAATCAACGGCAAGTTACTTTaGTACCGAATATCTCTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: QVQIPATTWWLATICNEINGKLL*YRISLL Trigger: GAGCAGAGATATTCGGTACAAAAGTAACTTGCCGTT...GATTTCATTACAGATGGTTGCAAGCCACCATGTGGTTGCTGGGATTTGAACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS TCA 90 bp | TCTCTTGCTGTCTCTGCCTTGCTTTGTAGGAATTTGAAACACTGTTaGTTAAGCACCTCAACAAATTCAGATTCAAAATCCTGGTCACTG | + |
|
Preference number: 5 (lower is better) Translates to: SLAVSALLCRNLKHC*LSTSTNSDSKSWSL Trigger: CAGTGACCAGGATTTTGAATCTGAATTTGTTGAGGTGCTTAATCAACAGTGTTTCAAATTCCTACAAAGCAAGGCAGAGACAGCAAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
||
| CDS-3UTR CAA 90 bp | GCTTCTTTTCCTTGCCTTCCAGACCTTCAAGGTATTTTACTTACTGAAGAAGAGTTCGTTCTGAATTACTaGATCTGTGATTCCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: ASFPCLPDLQGILLTEEEFVLNY*ICDSMR Trigger: CCTCATGGAATCACAGATCAAGTAATTCAGAACGAA...CTCTTCTTCAGTAAGTAAAATACCTTGAAGGTCTGGAAGGCAAGGAAAAGAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS-3UTR CAA 90 bp | TGTCTCCCTTCTTTATGGATCACTTTTAAACGGGGTCCTCAACAGATTAGTAGTTGCATCCTCTATGATTaGATAGACCAGTTTTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: CLPSLWITFKRGPQQISSCILYD*IDQFFL Trigger: CAGGAAAAACTGGTCTATCAAATCATAGAGGATGCA...ACTACTAATCTGTTGAGGACCCCGTTTAAAAGTGATCCATAAAGAAGGGAGACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS-3UTR CAA 90 bp | GCTGTGCCGTCTAATATAAACAGTATGCACAGGCAACTAAATAAAAACTTAGCTTCTGTTTACTTTCTCTaGCTGTCTCTGCCTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: AVPSNINSMHRQLNKNLASVYFL*LSLPCF Trigger: AAAGCAAGGCAGAGACAGCAAGAGAAAGTAAACAGA...AGCTAAGTTTTTATTTAGTTGCCTGTGCATACTGTTTATATTAGACGGCACAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS GCA 72 bp | ATGGCAGTCCTCAAAAACGGGGCAGAGTCCACAGGGTaGCCGGACCACGCCTGTAGGTGGGAGGATTGGGTT | + |
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Preference number: 6 (lower is better) Translates to: MAVLKNGAESTG*PDHACRWEDWV Trigger: AACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGTGGACTCTGCCCCGTTTTTGAGGACTGCCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS CCA 72 bp | GCAGAGTCCACAGGGTGCCCGGACCACGCCTGTAGGTaGGAGGATTGGGTTGACTGCCCTGTACAGTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: AESTGCPDHACR*EDWVDCPVQFH Trigger: ATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGTGGACTCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS CAA 90 bp | AGTCCACAGGGTGCCCGGACCACGCCTGTAGGTGGGAGGATTGGGTaGACTGCCCTGTACAGTTTCATGTGTCCATCTACGCTGCCAACA | + |
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Preference number: 6 (lower is better) Translates to: SPQGARTTPVGGRIG*TALYSFMCPSTLPT Trigger: TGTTGGCAGCGTAGATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGTGGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS GCA 72 bp | CCGGACCACGCCTGTAGGTGGGAGGATTGGGTTGACTaGCCTGTACAGTTTCATGTGTCCATCTACGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PDHACRWEDWVD*PVQFHVSIYAA Trigger: GGCAGCGTAGATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS CCA 72 bp | ACAGGGTGCCCGGACCACGCCTGTAGGTGGGAGGATTaGGTTGACTGCCCTGTACAGTTTCATGTGTCCATC | + |
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Preference number: 6 (lower is better) Translates to: TGCPDHACRWED*VDCPVQFHVSI Trigger: GATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACCCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS CAA 72 bp | GGTGCCCGGACCACGCCTGTAGGTGGGAGGATTGGGTaGACTGCCCTGTACAGTTTCATGTGTCCATCTACG | + |
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Preference number: 6 (lower is better) Translates to: GARTTPVGGRIG*TALYSFMCPST Trigger: CGTAGATGGACACATGAAACTGTACAGGGCAGTCAACCCAATCCTCCCACCTACAGGCGTGGTCCGGGCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS TCA 72 bp | TTAAAAGATCCAACTGACCCATGGATAACAGTCTATTaGTGGCCACTGCCCGCTGCTGGGCTTCAATGTGAG | + |
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Preference number: 6 (lower is better) Translates to: LKDPTDPWITVY*WPLPAAGLQCE Trigger: CTCACATTGAAGCCCAGCAGCGGGCAGTGGCCATCAATAGACTGTTATCCATGGGTCAGTTGGATCTTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028914.9 ENSMUST00000110017.3 |
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| CDS TCA 72 bp | TATAAGAGGCCTGTGTTACTCCTTAAAAGATCCAACTaGCCCATGGATAACAGTCTATTGATGGCCACTGCC | + |
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Preference number: 6 (lower is better) Translates to: YKRPVLLLKRSN*PMDNSLLMATA Trigger: GGCAGTGGCCATCAATAGACTGTTATCCATGGGTCAGTTGGATCTTTTAAGGAGTAACACAGGCCTCTTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028914.9 ENSMUST00000110017.3 |
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| CDS CAA 72 bp | GCTCCATATTCCTTTATTCCCTGCATCCTCTATGATTaGATAGACCAGTTTTTCCTGGTTATCGGACCCCTT | + |
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Preference number: 6 (lower is better) Translates to: APYSFIPCILYD*IDQFFLVIGPL Trigger: AAGGGGTCCGATAACCAGGAAAAACTGGTCTATCAAATCATAGAGGATGCAGGGAATAAAGGAATATGGAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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| CDS TCA 72 bp | GTCTCTGCCTTGCTTTGTAGGAATTTGAAACACTGTTaGTTAAGCACCTCAACAAATTCAGATTCAAAATCC | + |
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Preference number: 6 (lower is better) Translates to: VSALLCRNLKHC*LSTSTNSDSKS Trigger: GGATTTTGAATCTGAATTTGTTGAGGTGCTTAATCAACAGTGTTTCAAATTCCTACAAAGCAAGGCAGAGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028914.9 |
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