Pregenerated sensors for POLR3D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000776Ensembl transcript IDs: ENSMUST00000000793.13, ENSMUST00000180358.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GGTGGGCTAAAGAGGCCCTTCTGGGCTGCGTGTATTTaGGAGCATGTGCGGTCGTGGGCACAGTCACCGTGC | + |
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Preference number: 3 (lower is better) Translates to: GGLKRPFWAACI*EHVRSWAQSPC Trigger: GCACGGTGACTGTGCCCACGACCGCACATGCTCTCAAATACACGCAGCCCAGAAGGGCCTCTTTAGCCCACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| 3UTR GCA 72 bp | AGAGGCCCTTCTGGGCTGCGTGTATTTGAGAGCATGTaGGGTCGTGGGCACAGTCACCGTGCTCCTCCATCT | + |
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Preference number: 3 (lower is better) Translates to: RGPSGLRVFESM*GRGHSHRAPPS Trigger: AGATGGAGGAGCACGGTGACTGTGCCCACGACCGCACATGCTCTCAAATACACGCAGCCCAGAAGGGCCTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| 3UTR CCA 72 bp | GGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTaGGCTAAAGAGGCCCTTCTGGGCTGCGTGTATTTG | + |
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Preference number: 3 (lower is better) Translates to: GETGTTAKGYNG*AKEALLGCVYL Trigger: CAAATACACGCAGCCCAGAAGGGCCTCTTTAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| 3UTR GCA 72 bp | TCTTGTGCAAGGAGTTCCCATCTACAACATTCCCTGTaGTGCTCACACCAACCCTGCGAGGTAGGTATTGTC | + |
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Preference number: 3 (lower is better) Translates to: SCARSSHLQHSL*CSHQPCEVGIV Trigger: GACAATACCTACCTCGCAGGGTTGGTGTGAGCAGCACAGGGAATGTTGTAGATGGGAACTCCTTGCACAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR TCA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGACAGGCTTGATGTCCTaGGTGGGTGGCTGCCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: LCEVPFTAGARGSMALVGTGLMS*VGGCPG Trigger: CCCCGGGCAGCCACCCACTCAGGACATCAAGCCTGT...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR TCA 90 bp | ATACCCAGGCTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCACAGGCTTGATGTCCTaGGTGGGTGGCTGCCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: IPRLCEVPFTAGARGSMATGLMS*VGGCPG Trigger: CCCCGGGCAGCCACCCACTCAGGACATCAAGCCTGT...GGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAGCCTGGGTAT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CACGTTCCCAGAGATGAGGATGCGCCTTCCATACCCAGGCTGTGTGAGGTCCCAGGTCCCGGGAGCGGATaGAGGGAAGGCGACCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: HVPRDEDAPSIPRLCEVPGPGSG*REGDRA Trigger: CGCCCGGTCGCCTTCCCTCCATCCGCTCCCGGGACC...TGGGACCTCACACAGCCTGGGTATGGAAGGCGCATCCTCATCTCTGGGAACGTG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGTTGCCCAGGAGGAGTTaGACCTTCCCTGACTTACGG | + |
|
Preference number: 4 (lower is better) Translates to: LCEVPFTAGARGSMALVGLPRRS*TFPDLR Trigger: CCGTAAGTCAGGGAAGGTGCAACTCCTCCTGGGCAA...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGCATCCTTCTCCAGCATaGGCAGGATCTGCTTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LCEVPFTAGARGSMALVGHPSPA*AGSAWS Trigger: AGACCAAGCAGATCCTGCGCATGCTGGAGAAGGATG...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGGAGGGGCTTTCACCTTaGCTTCCTCTTCCTCATCTC | + |
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Preference number: 4 (lower is better) Translates to: LCEVPFTAGARGSMALVGEGLSP*LPLPHL Trigger: GAGATGAGGAAGAGGAAGCCAAGGTGAAAGCCCCTC...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| 3UTR CAA 72 bp | GGGTGGGCTAAAGAGGCCCTTCTGGGCTGCGTGTATTaGAGAGCATGTGCGGTCGTGGGCACAGTCACCGTG | + |
|
Preference number: 4 (lower is better) Translates to: GWAKEALLGCVY*RACAVVGTVTV Trigger: CACGGTGACTGTGCCCACGACCGCACATGCTCTCAAATACACGCAGCCCAGAAGGGCCTCTTTAGCCCACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | GGCCCTAGTCGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTATGTCCATCCTCGCCCTaGACCTCTGTCTTGACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: GPSRGKLGLQPKATTGGLCPSSP*TSVLTG Trigger: GCCTGTCAAGACAGAGGTGCAGGGCGAGGATGGACA...TAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCGACTAGGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | GGGCTGCGTGTATTTGAGAGCATGTGCGGTCGTGGGCACAGTCACCGTGCTCCTTGTCCATCCTCGCCCTaGACCTCTGTCTTGACAGGC | + |
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Preference number: 4 (lower is better) Translates to: GLRVFESMCGRGHSHRAPCPSSP*TSVLTG Trigger: GCCTGTCAAGACAGAGGTGCAGGGCGAGGATGGACA...AGGAGCACGGTGACTGTGCCCACGACCGCACATGCTCTCAAATACACGCAGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | ATACCCAGGCTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCAGCATGCGCAGGATCTaGTTGGTCTCTTCGTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: IPRLCEVPFTAGARGSMASMRRI*LVSSSV Trigger: AACAGACGAAGAGACCAAGCAGATCCTGCGCATGCT...GGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAGCCTGGGTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | GGGCTGCGTGTATTTGAGAGCATGTGCGGTCGTGGGCACAGTCACCGTGCTCCTTTGCCCAGGAGGAGTTaGACCTTCCCTGACTTACGG | + |
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Preference number: 4 (lower is better) Translates to: GLRVFESMCGRGHSHRAPLPRRS*TFPDLR Trigger: CCGTAAGTCAGGGAAGGTGCAACTCCTCCTGGGCAA...AGGAGCACGGTGACTGTGCCCACGACCGCACATGCTCTCAAATACACGCAGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGAACAGGTCGTTCCCATaGTCACATCTAGAGTCACCT | + |
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Preference number: 4 (lower is better) Translates to: LCEVPFTAGARGSMALVGNRSFP*SHLESP Trigger: AGGTGACTCTAGATGTGACCATGGGAACGACCTGTT...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | CGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTAAAGAGGCCCCATCCTTCTCCAGCATaGGCAGGATCTGCTTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: RGKLGLQPKATTGGLKRPHPSPA*AGSAWS Trigger: AGACCAAGCAGATCCTGCGCATGCTGGAGAAGGATG...GGGCCTCTTTAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTAAAGAGGCCCAAGATAGAATGGGACTaGATCACTTCCGGGCGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RGKLGLQPKATTGGLKRPKIEWD*ITSGRP Trigger: TGGCCGCCCGGAAGTGATCCAGTCCCATTCTATCTT...GGGCCTCTTTAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTAAAGAGGCCCCAGAGGCAGCTGCACTaGCATGTTCCGTGTGTCATT | + |
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Preference number: 4 (lower is better) Translates to: RGKLGLQPKATTGGLKRPQRQLH*HVPCVI Trigger: AATGACACACGGAACATGCCAGTGCAGCTGCCTCTG...GGGCCTCTTTAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | AGGTATTGTCCTCATGTCTGTCGGGTGAGGAATATGAGGCTCAGAAAGATTATGGGTCCCGGGAGCGGATaGAGGGAAGGCGACCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: RYCPHVCRVRNMRLRKIMGPGSG*REGDRA Trigger: CGCCCGGTCGCCTTCCCTCCATCCGCTCCCGGGACC...CATAATCTTTCTGAGCCTCATATTCCTCACCCGACAGACATGAGGACAATACCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTAAAGAGGCCCTGCGCAGGATCTGCTTaGTCTCTTCGTCTGTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: RGKLGLQPKATTGGLKRPCAGSA*SLRLFL Trigger: GAGAAACAGACGAAGAGACCAAGCAGATCCTGCGCA...GGGCCTCTTTAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | CACGTTCCCAGAGATGAGGATGCGCCTTCCATACCCAGGCTGTGTGAGGTCCCACAGAGGCAGCTGCACTaGCATGTTCCGTGTGTCATT | + |
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Preference number: 4 (lower is better) Translates to: HVPRDEDAPSIPRLCEVPQRQLH*HVPCVI Trigger: AATGACACACGGAACATGCCAGTGCAGCTGCCTCTG...TGGGACCTCACACAGCCTGGGTATGGAAGGCGCATCCTCATCTCTGGGAACGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | CGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTAAAGAGGCCCACAGACACCAGTTCCTaGAGGAAAGAACAGGTCGTT | + |
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Preference number: 4 (lower is better) Translates to: RGKLGLQPKATTGGLKRPTDTSS*RKEQVV Trigger: AACGACCTGTTCTTTCCTGCAGGAACTGGTGTCTGT...GGGCCTCTTTAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | CACGTTCCCAGAGATGAGGATGCGCCTTCCATACCCAGGCTGTGTGAGGTCCCAACAGACACCAGTTCCTaGAGGAAAGAACAGGTCGTT | + |
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Preference number: 4 (lower is better) Translates to: HVPRDEDAPSIPRLCEVPTDTSS*RKEQVV Trigger: AACGACCTGTTCTTTCCTGCAGGAACTGGTGTCTGT...TGGGACCTCACACAGCCTGGGTATGGAAGGCGCATCCTCATCTCTGGGAACGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | GGCCCTAGTCGGGGGAAACTGGGACTACAGCCAAAGGCTACAACGGGTGGGCTATCCCGGTCTTTTTCCTaGTTTATGACTACCATCTGT | + |
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Preference number: 4 (lower is better) Translates to: GPSRGKLGLQPKATTGGLSRSFS*FMTTIC Trigger: ACAGATGGTAGTCATAAAGCAGGAAAAAGACCGGGA...TAGCCCACCCGTTGTAGCCTTTGGCTGTAGTCCCAGTTTCCCCCGACTAGGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR GCA 90 bp | CACGTTCCCAGAGATGAGGATGCGCCTTCCATACCCAGGCTGTGTGAGGTCCCATCCCGGTCTTTTTCCTaGTTTATGACTACCATCTGT | + |
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Preference number: 4 (lower is better) Translates to: HVPRDEDAPSIPRLCEVPSRSFS*FMTTIC Trigger: ACAGATGGTAGTCATAAAGCAGGAAAAAGACCGGGA...TGGGACCTCACACAGCCTGGGTATGGAAGGCGCATCCTCATCTCTGGGAACGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | GAGCTGGGACTGAGTTTTAAGTCTTCAGTTCCATCGCATCCCTGTTCTTTCTTAAAGATAGAATGGGACTaGATCACTTCCGGGCGGCCA | + |
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Preference number: 4 (lower is better) Translates to: ELGLSFKSSVPSHPCSFLKIEWD*ITSGRP Trigger: TGGCCGCCCGGAAGTGATCCAGTCCCATTCTATCTT...TAAGAAAGAACAGGGATGCGATGGAACTGAAGACTTAAAACTCAGTCCCAGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | AGGTATTGTCCTCATGTCTGTCGGGTGAGGAATATGAGGCTCAGAAAGATTATGGAGGGGCTTTCACCTTaGCTTCCTCTTCCTCATCTC | + |
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Preference number: 4 (lower is better) Translates to: RYCPHVCRVRNMRLRKIMEGLSP*LPLPHL Trigger: GAGATGAGGAAGAGGAAGCCAAGGTGAAAGCCCCTC...CATAATCTTTCTGAGCCTCATATTCCTCACCCGACAGACATGAGGACAATACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | GAGCTGGGACTGAGTTTTAAGTCTTCAGTTCCATCGCATCCCTGTTCTTTCTTACCATATCTTCTTCCTTaGGGCCAGCCGAAAAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: ELGLSFKSSVPSHPCSFLPYLLP*GQPKKA Trigger: AGCCTTTTTCGGCTGGCCCCAAGGAAGAAGATATGG...TAAGAAAGAACAGGGATGCGATGGAACTGAAGACTTAAAACTCAGTCCCAGCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CCA 90 bp | GAGCTGGGACTGAGTTTTAAGTCTTCAGTTCCATCGCATCCCTGTTCTTTCTTAAACAGGTCGTTCCCATaGTCACATCTAGAGTCACCT | + |
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Preference number: 4 (lower is better) Translates to: ELGLSFKSSVPSHPCSFLNRSFP*SHLESP Trigger: AGGTGACTCTAGATGTGACCATGGGAACGACCTGTT...TAAGAAAGAACAGGGATGCGATGGAACTGAAGACTTAAAACTCAGTCCCAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR TCA 90 bp | GAGCTGGGACTGAGTTTTAAGTCTTCAGTTCCATCGCATCCCTGTTCTTTCTTACTTTTTCCTGCTTTATaGCTACCATCTGTCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: ELGLSFKSSVPSHPCSFLLFPAL*LPSVHP Trigger: AGGATGGACAGATGGTAGTCATAAAGCAGGAAAAAG...TAAGAAAGAACAGGGATGCGATGGAACTGAAGACTTAAAACTCAGTCCCAGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS TCA 90 bp | ATAGAATGGGACTGGATCACTTCCGGGCGGCCACGTCCCCGTCCGTaGCCCTCACGCTGGCGGTCCCTGTCCCGTTCACGCTTTTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: IEWDWITSGRPRPRP*PSRWRSLSRSRFSF Trigger: GAAGGAAAAGCGTGAACGGGACAGGGACCGCCAGCGTGAGGGTCACGGACGGGGACGTGGCCGCCCGGAAGTGATCCAGTCCCATTCTAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS GCA 90 bp | CTCGGCCACCGACACGTCCTTTGGGAGGCCAGGAGTCTTCCGGGCTaGTCTTGGAGGGGCTTTCACCTTGGCTTCCTCTTCCTCATCTCG | + |
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Preference number: 5 (lower is better) Translates to: LGHRHVLWEARSLPG*SWRGFHLGFLFLIS Trigger: CGAGATGAGGAAGAGGAAGCCAAGGTGAAAGCCCCTCCAAGAGCAGCCCGGAAGACTCCTGGCCTCCCAAAGGACGTGTCGGTGGCCGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGGGAGGGGCTTTCACCTaGGCTTCCTCTTCCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: LCEVPFTAGARGSMALVGGGAFT*ASSSSS Trigger: AGATGAGGAAGAGGAAGCCAAGGTGAAAGCCCCTCC...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS CCA 90 bp | CACCGACACGTCCTTTGGGAGGCCAGGAGTCTTCCGGGCTGCTCTTaGAGGGGCTTTCACCTTGGCTTCCTCTTCCTCATCTCGTGGCTC | + |
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Preference number: 5 (lower is better) Translates to: HRHVLWEARSLPGCS*RGFHLGFLFLISWL Trigger: GAGCCACGAGATGAGGAAGAGGAAGCCAAGGTGAAAGCCCCTCCAAGAGCAGCCCGGAAGACTCCTGGCCTCCCAAAGGACGTGTCGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | CTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCCTAGTCGGGTCCATATCTTCTTCCTaGGGGCCAGCCGAAAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: LCEVPFTAGARGSMALVGSISSS*GPAEKG Trigger: GCCTTTTTCGGCTGGCCCCAAGGAAGAAGATATGGA...CCCGACTAGGGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | GGGCTGCGTGTATTTGAGAGCATGTGCGGTCGTGGGCACAGTCACCGTGCTCCTTCTTCCGGGCTGCTCTaGGAGGGGCTTTCACCTTGG | + |
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Preference number: 5 (lower is better) Translates to: GLRVFESMCGRGHSHRAPSSGLL*EGLSPW Trigger: CCAAGGTGAAAGCCCCTCCAAGAGCAGCCCGGAAGA...AGGAGCACGGTGACTGTGCCCACGACCGCACATGCTCTCAAATACACGCAGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | ATACCCAGGCTGTGTGAGGTCCCATTCACAGCTGGGGCGAGGGGCAGCATGGCCGTGAAGGTTTTCTTCTaGACTCCGCCAAGGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: IPRLCEVPFTAGARGSMAVKVFF*TPPRVR Trigger: CCTCACCCTTGGCGGAGTCAAGAAGAAAACCTTCAC...GGCCATGCTGCCCCTCGCCCCAGCTGTGAATGGGACCTCACACAGCCTGGGTAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS TCA 90 bp | GCACTGGCATGTTCCGTGTGTCATTCTTTAGCCCCGGGTCATCGATaGAGTCATCCTTCTCCAGCATGCGCAGGATCTGCTTGGTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: ALACSVCHSLAPGHR*SHPSPACAGSAWSL Trigger: AAGAGACCAAGCAGATCCTGCGCATGCTGGAGAAGGATGACTTCATCGATGACCCGGGGCTAAAGAATGACACACGGAACATGCCAGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | CACGTTCCCAGAGATGAGGATGCGCCTTCCATACCCAGGCTGTGTGAGGTCCCATCTTTTGGCTCTTCTTaGATCTTCCGACTGATGATA | + |
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Preference number: 5 (lower is better) Translates to: HVPRDEDAPSIPRLCEVPSFGSS*IFRLMI Trigger: TATCATCAGTCGGAAGATCAAAGAAGAGCCAAAAGA...TGGGACCTCACACAGCCTGGGTATGGAAGGCGCATCCTCATCTCTGGGAACGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | AGGTATTGTCCTCATGTCTGTCGGGTGAGGAATATGAGGCTCAGAAAGATTATGTCTTCCGGGCTGCTCTaGGAGGGGCTTTCACCTTGG | + |
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Preference number: 5 (lower is better) Translates to: RYCPHVCRVRNMRLRKIMSSGLL*EGLSPW Trigger: CCAAGGTGAAAGCCCCTCCAAGAGCAGCCCGGAAGA...CATAATCTTTCTGAGCCTCATATTCCTCACCCGACAGACATGAGGACAATACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | GAGCTGGGACTGAGTTTTAAGTCTTCAGTTCCATCGCATCCCTGTTCTTTCTTAGTGAAGGTTTTCTTCTaGACTCCGCCAAGGGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: ELGLSFKSSVPSHPCSFLVKVFF*TPPRVR Trigger: CCTCACCCTTGGCGGAGTCAAGAAGAAAACCTTCAC...TAAGAAAGAACAGGGATGCGATGGAACTGAAGACTTAAAACTCAGTCCCAGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS-3UTR CAA 90 bp | AGGTATTGTCCTCATGTCTGTCGGGTGAGGAATATGAGGCTCAGAAAGATTATGTCCATATCTTCTTCCTaGGGGCCAGCCGAAAAAGGC | + |
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Preference number: 5 (lower is better) Translates to: RYCPHVCRVRNMRLRKIMSISSS*GPAEKG Trigger: GCCTTTTTCGGCTGGCCCCAAGGAAGAAGATATGGA...CATAATCTTTCTGAGCCTCATATTCCTCACCCGACAGACATGAGGACAATACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS CCA 72 bp | CAGCTCTCTGAGCAGCTCGGCCACCGACACGTCCTTTaGGAGGCCAGGAGTCTTCCGGGCTGCTCTTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: QLSEQLGHRHVL*EARSLPGCSWR Trigger: CCTCCAAGAGCAGCCCGGAAGACTCCTGGCCTCCCAAAGGACGTGTCGGTGGCCGAGCTGCTCAGAGAGCTG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS GCA 72 bp | CGACACGTCCTTTGGGAGGCCAGGAGTCTTCCGGGCTaGTCTTGGAGGGGCTTTCACCTTGGCTTCCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: RHVLWEARSLPG*SWRGFHLGFLF Trigger: GAAGAGGAAGCCAAGGTGAAAGCCCCTCCAAGAGCAGCCCGGAAGACTCCTGGCCTCCCAAAGGACGTGTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS CCA 72 bp | GTCCTTTGGGAGGCCAGGAGTCTTCCGGGCTGCTCTTaGAGGGGCTTTCACCTTGGCTTCCTCTTCCTCATC | + |
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Preference number: 6 (lower is better) Translates to: VLWEARSLPGCS*RGFHLGFLFLI Trigger: GATGAGGAAGAGGAAGCCAAGGTGAAAGCCCCTCCAAGAGCAGCCCGGAAGACTCCTGGCCTCCCAAAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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| CDS TCA 72 bp | TGTTCCGTGTGTCATTCTTTAGCCCCGGGTCATCGATaGAGTCATCCTTCTCCAGCATGCGCAGGATCTGCT | + |
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Preference number: 6 (lower is better) Translates to: CSVCHSLAPGHR*SHPSPACAGSA Trigger: AGCAGATCCTGCGCATGCTGGAGAAGGATGACTTCATCGATGACCCGGGGCTAAAGAATGACACACGGAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000793.13 ENSMUST00000180358.3 |
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