RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POLR3C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028099

Ensembl transcript IDs: ENSMUST00000029741.9, ENSMUST00000125183.2, ENSMUST00000128918.2, ENSMUST00000141377.8, ENSMUST00000154679.8

Found 241 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGCGCTGTACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCATGGTCTTGCCATCTGTAGAACAGGA +
Preference number: 1 (lower is better)
Translates to: TALYKVSICQSHKCI*YLSVVHGLAICRTG
Trigger: TCCTGTTCTACAGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTACAGCGCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
3UTR-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCAAGGATGCTGGTTTCTaGTTGGGGATGTGCTCAGTG +
Preference number: 2 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLKDAGF*LGMCSV
Trigger: CACTGAGCACATCCCCAACCAGAAACCAGCATCCTT...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
3UTR-3UTR TCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCAGTGGAACATCAGTTaGCTAGCATGTGAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLQWNIS*LACERP
Trigger: GGGCCTTTCACATGCTAGTCAACTGATGTTCCACTG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
3UTR-3UTR TCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATCAGTTGACTAGCATGTaGAAGGCCCTGAGTTTGATC +
Preference number: 2 (lower is better)
Translates to: GSVQESAAELGMVVYAFNQLTSM*KALSLI
Trigger: GATCAAACTCAGGGCCTTTCACATGCTAGTCAACTG...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
3UTR-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCATGCTGGTTTCTGGTTaGGGATGTGCTCAGTGGAAC +
Preference number: 2 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVMLVSG*GCAQWN
Trigger: GTTCCACTGAGCACATCCCCAACCAGAAACCAGCAT...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
3UTR-3UTR TCA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAACAGTGGAACATCAGTTaGCTAGCATGTGAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKQWNIS*LACERP
Trigger: GGGCCTTTCACATGCTAGTCAACTGATGTTCCACTG...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
3UTR-3UTR CAA 90 bp GACAAGGGTTGGGGCGGGTGGCGGTGGCCCACGGTCAGAACTGTCAGTGTCAGGGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCA +
Preference number: 3 (lower is better)
Translates to: DKGWGGWRWPTVRTVSVRVAQMH*IPQRSP
Trigger: TGGACTACGCTGAGGTATCAAATGCATTTGTGCGAC...CCTGACACTGACAGTTCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
3UTR CCA 72 bp CTTTTCATTAATGACAAGGGTTGGGGCGGGTGGCGGTaGCCCACGGTCAGAACTGTCAGTGTCAGGAACCAG +
Preference number: 3 (lower is better)
Translates to: LFINDKGWGGWR*PTVRTVSVRNQ
Trigger: CTGGTTCCTGACACTGACAGTTCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTTGTCATTAATGAAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
3UTR TCA 72 bp TCAGTGTCAGGAACCAGGGGACAGCGCTGTACAAAGTaGGTATCTGCCAGTCGCACAAATGCATTTGATACC +
Preference number: 3 (lower is better)
Translates to: SVSGTRGQRCTK*VSASRTNAFDT
Trigger: GGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTACAGCGCTGTCCCCTGGTTCCTGACACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
3UTR TCA 72 bp TACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCATGGTCTTGCCATCTGT +
Preference number: 3 (lower is better)
Translates to: YKVSICQSHKCI*YLSVVHGLAIC
Trigger: ACAGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGAAGGGTTGGGGCGGGTaGCGGTGGCCCACGGTCAGA +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLKGWGG*RWPTVR
Trigger: TCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTT...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGACCTCTGGTCCTCAGTACCCGGCTaGACTGGGCTTCATACTCCA +
Preference number: 4 (lower is better)
Translates to: GTREARGPKTIERLTDLWSSVPG*TGLHTP
Trigger: TGGAGTATGAAGCCCAGTGCAGCCGGGTACTGAGGA...CCAGAGGTCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGAAGGGTTGGGGCGGGTaGCGGTGGCCCACGGTCAGA +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRKGWGG*RWPTVR
Trigger: TCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTT...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACAAGGGTTGGGGCGGGTaGCGGTGGCCCACGGTCAGA +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNKGWGG*RWPTVR
Trigger: TCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTT...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGCGCTCACGATTGCTTaGTCACGGAAGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLALTIA*SRKCWW
Trigger: CCACCAGCACTTCCGTGACCAAGCAATCGTGAGCGC...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCCTCCATGGTCTCTGTaGGTCGGTCGGCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLPPWSL*VGRLLS
Trigger: AGAAAGTAGCCGACCGACTCACAGAGACCATGGAGG...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTCAGCGTAGTCCATGGTCTTGCCATCTGTAGAACAGGAGGAACGAGGGAGGCGCCTCCATGGTCTCTGTaGGTCGGTCGGCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: LSVVHGLAICRTGGTREAPPWSL*VGRLLS
Trigger: AGAAAGTAGCCGACCGACTCACAGAGACCATGGAGG...CGCCTCCCTCGTTCCTCCTGTTCTACAGATGGCAAGACCATGGACTACGCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR TCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCATCTGCCAGCAGCGTaGGGTACTGATCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLHLPAA*GTDREP
Trigger: AGGTTCTCGATCAGTACCTCACGCTGCTGGCAGATG...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGCGTGGCCTGCATGGATaGCATGATGGCTTCCACCCG +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWRGLHG*HDGFHP
Trigger: CGGGTGGAAGCCATCATGGCATCCATGCAGGCCACG...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTCAGCGTAGTCCATGGTCTTGCCATCTGTAGAACAGGAGGAACGAGGGAGGCGAGTACCCGGCTGCACTaGGCTTCATACTCCACCACA +
Preference number: 4 (lower is better)
Translates to: LSVVHGLAICRTGGTREASTRLH*ASYSTT
Trigger: TGTGGTGGAGTATGAAGCCCAGTGCAGCCGGGTACT...CGCCTCCCTCGTTCCTCCTGTTCTACAGATGGCAAGACCATGGACTACGCTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGATTAATGACAAGGGTTaGGGCGGGTGGCGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRINDKG*GGWRWP
Trigger: GGGCCACCGCCACCCGCCCCAACCCTTGTCATTAAT...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATATTAATGACAAGGGTTaGGGCGGGTGGCGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNINDKG*GGWRWP
Trigger: GGGCCACCGCCACCCGCCCCAACCCTTGTCATTAAT...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGACAGATAGAAGGTCCTaGACGGGGCGTGGTCTGGCG +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWTDRRS*TGRGLA
Trigger: CGCCAGACCACGCCCCGTCCAGGACCTTCTATCTGT...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp AACAGGAGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGAGCTGGCTTCCAGTTCTaGCTAGGTGGACTCCAATTT +
Preference number: 4 (lower is better)
Translates to: NRRNEGGERAQDNRAANRAGFQF*LGGLQF
Trigger: AAATTGGAGTCCACCTAGTCAGAACTGGAAGCCAGC...TCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCCTCCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR GCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATGCTTGGTCACGGAAGTaGTGGTGGAACCTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNAWSRK*WWNLSR
Trigger: CCTCGACAGGTTCCACCAGCACTTCCGTGACCAAGC...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGCTTGGTCACGGAAGTaGTGGTGGAACCTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRAWSRK*WWNLSR
Trigger: CCTCGACAGGTTCCACCAGCACTTCCGTGACCAAGC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR GCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGCAGCTGCACCTCCTCTaGACCCGTGGCCTGCATGGA +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLQLHLL*TRGLHG
Trigger: TCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTG...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTCAGCTGCACCTCCTCTaGACCCGTGGCCTGCATGGA +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISQLHLL*TRGLHG
Trigger: TCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTG...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGACCTCTGGCTTTGGGCAATTACTCTAAGTaGCTGGCTTCCAGTTCTGAC +
Preference number: 4 (lower is better)
Translates to: EGGERAQDNRAANRPLALGNYSK*LASSSD
Trigger: GTCAGAACTGGAAGCCAGCCACTTAGAGTAATTGCC...CAAAGCCAGAGGTCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp AACAGGAGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGACGTACAGCGTTTTGGTaGTGTAGATGTACCGGGGAT +
Preference number: 4 (lower is better)
Translates to: NRRNEGGERAQDNRAANRRTAFW*CRCTGD
Trigger: ATCCCCGGTACATCTACACCACCAAAACGCTGTACG...TCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCCTCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCACCGTACAGCGTTTTaGTGGTGTAGATGTACCGGG +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLHRTAF*WCRCTG
Trigger: CCCGGTACATCTACACCACCAAAACGCTGTACGGTG...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCTCACGGAAGTGCTGGTaGAACCTGTCGAGGTTGACT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLSRKCW*NLSRLT
Trigger: AGTCAACCTCGACAGGTTCCACCAGCACTTCCGTGA...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGCGCTCACGATTGCTTaGTCACGGAAGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRALTIA*SRKCWW
Trigger: CCACCAGCACTTCCGTGACCAAGCAATCGTGAGCGC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCCAGACGGAATATCCTaGCACAGCGAGACCCGAATC +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLPDGIS*HSETRI
Trigger: GATTCGGGTCTCGCTGTGCCAGGATATTCCGTCTGG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGAGGACCAGGTTGTGGTaGATGAGGACACAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLRTRLW*MRTQRA
Trigger: AGCCCTTTGTGTCCTCATTCACCACAACCTGGTCCT...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCAGCGCTGTACAAAGTaGGTATCTGCCAGTCGCACA +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLQRCTK*VSASRT
Trigger: TGTGCGACTGGCAGATACTCACTTTGTACAGCGCTG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCGAATCTCTCCTGGATaGCAGACTCCAGAGTTGCAG +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLRISPG*QTPELQ
Trigger: CTGCAACTCTGGAGTCTGTCATCCAGGAGAGATTCG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGATGGCTTCCACCCGCTaGGACTTTTCTAGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWMASTR*DFSSSR
Trigger: GCGGCTACTAGAAAAGTCTCAGCGGGTGGAAGCCAT...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCCTGCATGGATGCCATaGTGGCTTCCACCCGCTGAG +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVPAWMP*WLPPAE
Trigger: CTCAGCGGGTGGAAGCCATCATGGCATCCATGCAGG...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACCCTGCATGGATGCCATaGTGGCTTCCACCCGCTGAG +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNPAWMP*WLPPAE
Trigger: CTCAGCGGGTGGAAGCCATCATGGCATCCATGCAGG...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGCACTGCGCTCACGATTaGTTGGTCACGGAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWHCAHD*LVTEVL
Trigger: CAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTG...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCACTGCGCTCACGATTaGTTGGTCACGGAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRHCAHD*LVTEVL
Trigger: CAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR GCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGCAAAGTCCTCCACCTaGTTCTGCTCAAGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLAKSST*FCSRCF
Trigger: GAAACACCTTGAGCAGAAGCAGGTGGAGGACTTTGC...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGTACAGCATGTCCTTTaGCTCCTTCGCAGGGATCAT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLVQHVL*LLRRDH
Trigger: ATGATCCCTGCGAAGGAGGCAAAGGACATGCTGTAC...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTCGTGGCCTGCATGGATaGCATGATGGCTTCCACCCG +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISRGLHG*HDGFHP
Trigger: CGGGTGGAAGCCATCATGGCATCCATGCAGGCCACG...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGATCTCCTCTATCTCCTaGAGCTGCACCTCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLISSIS*SCTSSA
Trigger: TGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGAT...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGACCTCTGGATGCTTTTGTGTCGTaGGCAATTACTCTAAGTGGC +
Preference number: 4 (lower is better)
Translates to: RNEGGERAQDNRAANRPLDAFVS*AITLSG
Trigger: GCCACTTAGAGTAATTGCCCACGACACAAAAGCATC...CAGAGGTCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGAGTACCCGGCTGCACTaGGCTTCATACTCCACCACA +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWSTRLH*ASYSTT
Trigger: TGTGGTGGAGTATGAAGCCCAGTGCAGCCGGGTACT...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCGTACAGCGTTTTGGTaGTGTAGATGTACCGGGGAT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLRTAFW*CRCTGD
Trigger: ATCCCCGGTACATCTACACCACCAAAACGCTGTACG...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCCTCAGCGTAGTCCATaGTCTTGCCATCCTCCATGG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRPQRSP*SCHPPW
Trigger: CCATGGAGGATGGCAAGACCATGGACTACGCTGAGG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCATTAATGACAAGGGTTaGGGCGGGTGGCGGTGGCCC +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVINDKG*GGWRWP
Trigger: GGGCCACCGCCACCCGCCCCAACCCTTGTCATTAAT...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTGGTCACGGAAGTGCTaGTGGAACCTGTCGAGGTTG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRWSRKC*WNLSRL
Trigger: CAACCTCGACAGGTTCCACCAGCACTTCCGTGACCA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCCGAATCTCTCCTaGATGACAGACTCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLDPNLS*MTDSRV
Trigger: AACTCTGGAGTCTGTCATCCAGGAGAGATTCGGGTC...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCACAGATAGAAGGTCCTaGACGGGGCGTGGTCTGGCG +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVTDRRS*TGRGLA
Trigger: CGCCAGACCACGCCCCGTCCAGGACCTTCTATCTGT...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATCAGCGCTGTACAAAGTaGGTATCTGCCAGTCGCACA +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNQRCTK*VSASRT
Trigger: TGTGCGACTGGCAGATACTCACTTTGTACAGCGCTG...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCAGCGCTGTACAAAGTaGGTATCTGCCAGTCGCACA +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRQRCTK*VSASRT
Trigger: TGTGCGACTGGCAGATACTCACTTTGTACAGCGCTG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR GCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATCGTAGTCCATGGTCTTaGCATCCTCCATGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNRSPWS*HPPWSL
Trigger: CAGAGACCATGGAGGATGGCAAGACCATGGACTACG...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCGTAGTCCATGGTCTTaGCATCCTCCATGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRRSPWS*HPPWSL
Trigger: CAGAGACCATGGAGGATGGCAAGACCATGGACTACG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR GCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGCGTAGTCCATGGTCTTaGCATCCTCCATGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWRSPWS*HPPWSL
Trigger: CAGAGACCATGGAGGATGGCAAGACCATGGACTACG...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGGCTTGGTCACGGAAGTaGTGGTGGAACCTGTCGAGG +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLAWSRK*WWNLSR
Trigger: CCTCGACAGGTTCCACCAGCACTTCCGTGACCAAGC...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACTCTATCTCCTGCAGCTaGACCTCCTCTGCACCCGTG +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNSISCS*TSSAPV
Trigger: CACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGA...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AACAGGAGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGAATTACTCTAAGTGGCTaGCTTCCAGTTCTGACTAGG +
Preference number: 4 (lower is better)
Translates to: NRRNEGGERAQDNRAANRITLSG*LPVLTR
Trigger: CCTAGTCAGAACTGGAAGCCAGCCACTTAGAGTAAT...TCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCCTCCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGGCAATTACTCTAAGTaGCTGGCTTCCAGTTCTGAC +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLGNYSK*LASSSD
Trigger: GTCAGAACTGGAAGCCAGCCACTTAGAGTAATTGCC...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTCACGGAAGTGCTGGTaGAACCTGTCGAGGTTGACT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRSRKCW*NLSRLT
Trigger: AGTCAACCTCGACAGGTTCCACCAGCACTTCCGTGA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACGCGCTCACGATTGCTTaGTCACGGAAGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNALTIA*SRKCWW
Trigger: CCACCAGCACTTCCGTGACCAAGCAATCGTGAGCGC...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGTGTGCAACAGCATCCTaGCAGCTGAGAGCACATTCA +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLCATAS*QLRAHS
Trigger: TGAATGTGCTCTCAGCTGCCAGGATGCTGTTGCACA...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGGACCTGAAGATCTGTaGGACAGAAGGAGATGCTGG +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRGPEDL*DRRRCW
Trigger: CCAGCATCTCCTTCTGTCCCACAGATCTTCAGGTCC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR TCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGCCTCCATGGTCTCTGTaGGTCGGTCGGCTACTTTCT +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLPPWSL*VGRLLS
Trigger: AGAAAGTAGCCGACCGACTCACAGAGACCATGGAGG...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCAT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLSHKCI*YLSVVH
Trigger: ATGGACTACGCTGAGGTATCAAATGCATTTGTGCGA...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCATCTGCCAGCAGCGTaGGGTACTGATCGAGAACCT +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVHLPAA*GTDREP
Trigger: AGGTTCTCGATCAGTACCTCACGCTGCTGGCAGATG...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGATGGCTTCCACCCGCTaGGACTTTTCTAGTAGCCGC +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLMASTR*DFSSSR
Trigger: GCGGCTACTAGAAAAGTCTCAGCGGGTGGAAGCCAT...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTCCTCAGTACCCGGCTaGACTGGGCTTCATACTCCA +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQSSVPG*TGLHTP
Trigger: TGGAGTATGAAGCCCAGTGCAGCCGGGTACTGAGGA...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACCACTGCGCTCACGATTaGTTGGTCACGGAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNHCAHD*LVTEVL
Trigger: CAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTG...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGGCAAAGTCCTCCACCTaGTTCTGCTCAAGGTGTTTC +
Preference number: 4 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWAKSST*FCSRCF
Trigger: GAAACACCTTGAGCAGAAGCAGGTGGAGGACTTTGC...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAATCTATCTCCTGCAGCTaGACCTCCTCTGCACCCGTG +
Preference number: 4 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKSISCS*TSSAPV
Trigger: CACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGA...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTGGGACAGAAGGAGATaGTGGAAACAGGGTCAGAAC +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRWDRRR*WKQGQN
Trigger: GTTCTGACCCTGTTTCCAGCATCTCCTTCTGTCCCA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCATTACTCTAAGTGGCTaGCTTCCAGTTCTGACTAGG +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLITLSG*LPVLTR
Trigger: CCTAGTCAGAACTGGAAGCCAGCCACTTAGAGTAAT...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCAGTACCCGGCTGCACTaGGCTTCATACTCCACCACA +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVSTRLH*ASYSTT
Trigger: TGTGGTGGAGTATGAAGCCCAGTGCAGCCGGGTACT...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGCCTCAGCGTAGTCCATaGTCTTGCCATCCTCCATGG +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQPQRSP*SCHPPW
Trigger: CCATGGAGGATGGCAAGACCATGGACTACGCTGAGG...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCTGGTCACGGAAGTGCTaGTGGAACCTGTCGAGGTTG +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVWSRKC*WNLSRL
Trigger: CAACCTCGACAGGTTCCACCAGCACTTCCGTGACCA...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATGACCCGAATCTCTCCTaGATGACAGACTCCAGAGTT +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNDPNLS*MTDSRV
Trigger: AACTCTGGAGTCTGTCATCCAGGAGAGATTCGGGTC...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCCAGACGGAATATCCTaGCACAGCGAGACCCGAATC +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVPDGIS*HSETRI
Trigger: GATTCGGGTCTCGCTGTGCCAGGATATTCCGTCTGG...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGACAGAAGGAGATGCTaGAAACAGGGTCAGAACGCA +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRDRRRC*KQGQNA
Trigger: TGCGTTCTGACCCTGTTTCCAGCATCTCCTTCTGTC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR TCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATCCAGGTTGTGGTGAATaGGGACACAAAGGGCTTTTT +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNPGCGE*GHKGLF
Trigger: AAAAAGCCCTTTGTGTCCTCATTCACCACAACCTGG...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTGCCAGTCGCACAAATGCATTTGATACCTCAGCGTAGTCCATGGTCTTGCCATAGGACCAGGTTGTGGTaGATGAGGACACAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: LPVAQMHLIPQRSPWSCHRTRLW*MRTQRA
Trigger: AGCCCTTTGTGTCCTCATTCACCACAACCTGGTCCT...ATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR TCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGAGGACCAGGTTGTGGTaGATGAGGACACAAAGGGCT +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLRTRLW*MRTQRA
Trigger: AGCCCTTTGTGTCCTCATTCACCACAACCTGGTCCT...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCAGCATCTTCATCAGATaGTCTCCTCCTCTTACCTTT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLSIFIR*SPPLTF
Trigger: AAAGGTAAGAGGAGGAGATCATCTGATGAAGATGCT...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGGAACCTGTCGAGGTTaGCTTGCCAATAAATCCCAT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRGTCRG*LANKSH
Trigger: ATGGGATTTATTGGCAAGTCAACCTCGACAGGTTCC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR TCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCAGCATCCTGGCAGCTaGGAGCACATTCACAGTGTA +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVQHPGS*EHIHSV
Trigger: TACACTGTGAATGTGCTCTCAGCTGCCAGGATGCTG...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp AGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGACCTCTGACAATCTCACCAAAATaGTCTTGCAGCAACAAAGAA +
Preference number: 4 (lower is better)
Translates to: RNEGGERAQDNRAANRPLTISPK*SCSNKE
Trigger: TTCTTTGTTGCTGCAAGAGCATTTTGGTGAGATTGT...CAGAGGTCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR GCA 90 bp AGCGTAGTCCATGGTCTTGCCATCTGTAGAACAGGAGGAACGAGGGAGGCGAGACTGACATTGTCATTTTaGCATTCAGCAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: SVVHGLAICRTGGTREARLTLSF*HSAGAP
Trigger: AGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAG...TCTCGCCTCCCTCGTTCCTCCTGTTCTACAGATGGCAAGACCATGGACTACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR GCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCTCCTCTATCTCCTaGAGCTGCACCTCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNISSIS*SCTSSA
Trigger: TGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGAT...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATGGCAATTACTCTAAGTaGCTGGCTTCCAGTTCTGAC +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNGNYSK*LASSSD
Trigger: GTCAGAACTGGAAGCCAGCCACTTAGAGTAATTGCC...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGATGCTTTTGTGTCGTaGGCAATTACTCTAAGTGGC +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLDAFVS*AITLSG
Trigger: GCCACTTAGAGTAATTGCCCACGACACAAAAGCATC...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACCACCGTACAGCGTTTTaGTGGTGTAGATGTACCGGG +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNHRTAF*WCRCTG
Trigger: CCCGGTACATCTACACCACCAAAACGCTGTACGGTG...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGCCAGTCGCACAAATGCATTTGATACCTCAGCGTAGTCCATGGTCTTGCCATCACCGTACAGCGTTTTaGTGGTGTAGATGTACCGGG +
Preference number: 4 (lower is better)
Translates to: LPVAQMHLIPQRSPWSCHHRTAF*WCRCTG
Trigger: CCCGGTACATCTACACCACCAAAACGCTGTACGGTG...ATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCCTATCAAGCTCAGTTTaGGAACTAGGTACATGTCCT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLLSSSV*ELGTCP
Trigger: AGGACATGTACCTAGTTCCCAAACTGAGCTTGATAG...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGTCACGGAAGTGCTGGTaGAACCTGTCGAGGTTGACT +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLSRKCW*NLSRLT
Trigger: AGTCAACCTCGACAGGTTCCACCAGCACTTCCGTGA...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAATGGTCACGGAAGTGCTaGTGGAACCTGTCGAGGTTG +
Preference number: 4 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKWSRKC*WNLSRL
Trigger: CAACCTCGACAGGTTCCACCAGCACTTCCGTGACCA...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGGCTGGCTTCCAGTTCTaGCTAGGTGGACTCCAATTT +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQAGFQF*LGGLQF
Trigger: AAATTGGAGTCCACCTAGTCAGAACTGGAAGCCAGC...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp AGAACTGTCAGTGTCAGGAACCAGGGGACAGCGCTGTACAAAGTGAGTATCTGCCCAGGTTGTGGTGAATaGGGACACAAAGGGCTTTTT +
Preference number: 4 (lower is better)
Translates to: RTVSVRNQGTALYKVSICPGCGE*GHKGLF
Trigger: AAAAAGCCCTTTGTGTCCTCATTCACCACAACCTGG...GCAGATACTCACTTTGTACAGCGCTGTCCCCTGGTTCCTGACACTGACAGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR TCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCAT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRSHKCI*YLSVVH
Trigger: ATGGACTACGCTGAGGTATCAAATGCATTTGTGCGA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR TCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGAGCATCTTCATCAGATaGTCTCCTCCTCTTACCTTT +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLSIFIR*SPPLTF
Trigger: AAAGGTAAGAGGAGGAGATCATCTGATGAAGATGCT...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAACAGCATCCTGGCAGCTaGGAGCACATTCACAGTGTA +
Preference number: 4 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKQHPGS*EHIHSV
Trigger: TACACTGTGAATGTGCTCTCAGCTGCCAGGATGCTG...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCTACAAAGTGAGTATCTaGCAGTCGCACAAATGCATT +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLYKVSI*QSHKCI
Trigger: AATGCATTTGTGCGACTGGCAGATACTCACTTTGTA...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCTCAAGGTGTTTCTTCTaGAATACCAGACGGAATATC +
Preference number: 4 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLSRCFF*NTRRNI
Trigger: GATATTCCGTCTGGTATTGCAGAAGAAACACCTTGA...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTGTACAGCATGTCCTTTaGCTCCTTCGCAGGGATCAT +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISVQHVL*LLRRDH
Trigger: ATGATCCCTGCGAAGGAGGCAAAGGACATGCTGTAC...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACCGTACAGCGTTTTGGTaGTGTAGATGTACCGGGGAT +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNRTAFW*CRCTGD
Trigger: ATCCCCGGTACATCTACACCACCAAAACGCTGTACG...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGTGTGCAACAGCATCCTaGCAGCTGAGAGCACATTCA +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLCATAS*QLRAHS
Trigger: TGAATGTGCTCTCAGCTGCCAGGATGCTGTTGCACA...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTATGGTTTCATCCACCTaGATCTCACTGGCGTCCAAC +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISMVSST*ISLASN
Trigger: GTTGGACGCCAGTGAGATCCAGGTGGATGAAACCAT...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATGGTTTCATCCACCTaGATCTCACTGGCGTCCAAC +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNMVSST*ISLASN
Trigger: GTTGGACGCCAGTGAGATCCAGGTGGATGAAACCAT...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGCCAGGTTGTGGTGAATaGGGACACAAAGGGCTTTTT +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQPGCGE*GHKGLF
Trigger: AAAAAGCCCTTTGTGTCCTCATTCACCACAACCTGG...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGAGCATCTTCATCAGATaGTCTCCTCCTCTTACCTTT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRSIFIR*SPPLTF
Trigger: AAAGGTAAGAGGAGGAGATCATCTGATGAAGATGCT...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR TCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTGGAACCTGTCGAGGTTaGCTTGCCAATAAATCCCAT +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISGTCRG*LANKSH
Trigger: ATGGGATTTATTGGCAAGTCAACCTCGACAGGTTCC...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGGGAACCTGTCGAGGTTaGCTTGCCAATAAATCCCAT +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLGTCRG*LANKSH
Trigger: ATGGGATTTATTGGCAAGTCAACCTCGACAGGTTCC...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACTTTCCTGCAGCAGGATaGAGTTTTCCGAGAGCATCT +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNFPAAG*SFPRAS
Trigger: AGATGCTCTCGGAAAACTTCATCCTGCTGCAGGAAA...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTTCCTGCAGCAGGATaGAGTTTTCCGAGAGCATCT +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQFPAAG*SFPRAS
Trigger: AGATGCTCTCGGAAAACTTCATCCTGCTGCAGGAAA...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATGTCTTAGGAATTTCCTaGAGCAGGATGAAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNVLGIS*SRMKFS
Trigger: GGAAAACTTCATCCTGCTGCAGGAAATTCCTAAGAC...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATACTGCCTCTTCATGGTaGTCTCAATGTATGATTCCA +
Preference number: 4 (lower is better)
Translates to: GSVQESAAELGMVVYAFNTASSW*SQCMIP
Trigger: TGGAATCATACATTGAGAGCACCATGAAGAGGCAGT...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCTATCAAGCTCAGTTTaGGAACTAGGTACATGTCCT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRLSSSV*ELGTCP
Trigger: AGGACATGTACCTAGTTCCCAAACTGAGCTTGATAG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGATTCCAGTAAGAAGATaGTTTCATCCACCTGGATCT +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLIPVRR*FHPPGS
Trigger: AGATCCAGGTGGATGAAACCATCTTCTTACTGGAAT...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCTAAATGTAACTCATTaGAGGACAGCGGCTGAGTAT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRLNVTH*RTAAEY
Trigger: ATACTCAGCCGCTGTCCTCCAATGAGTTACATTTAG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR TCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCAT +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQSHKCI*YLSVVH
Trigger: ATGGACTACGCTGAGGTATCAAATGCATTTGTGCGA...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTGACATTGTCATTTTaGCATTCAGCAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVLTLSF*HSAGAP
Trigger: AGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAG...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACCTGACATTGTCATTTTaGCATTCAGCAGGAGCTCCT +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNLTLSF*HSAGAP
Trigger: AGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAG...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTACAAAGTGAGTATCTaGCAGTCGCACAAATGCATT +
Preference number: 4 (lower is better)
Translates to: LSPDFPINSSGSSASSVRYKVSI*QSHKCI
Trigger: AATGCATTTGTGCGACTGGCAGATACTCACTTTGTA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGGATGCTTTTGTGTCGTaGGCAATTACTCTAAGTGGC +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLDAFVS*AITLSG
Trigger: GCCACTTAGAGTAATTGCCCACGACACAAAAGCATC...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGACGCTAATGCTTTATaGAGGTTGATGACAAACATT +
Preference number: 4 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLDANAL*RLMTNI
Trigger: AATGTTTGTCATCAACCTCCATAAAGCATTAGCGTC...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGGTCTTAGGAATTTCCTaGAGCAGGATGAAGTTTTCC +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQVLGIS*SRMKFS
Trigger: GGAAAACTTCATCCTGCTGCAGGAAATTCCTAAGAC...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGACTGCCTCTTCATGGTaGTCTCAATGTATGATTCCA +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLTASSW*SQCMIP
Trigger: TGGAATCATACATTGAGAGCACCATGAAGAGGCAGT...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTATCAAGCTCAGTTTaGGAACTAGGTACATGTCCT +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVLSSSV*ELGTCP
Trigger: AGGACATGTACCTAGTTCCCAAACTGAGCTTGATAG...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAAGCCGTTCTATCAAGTTaGCTATGCTCTTATAGCACC +
Preference number: 4 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKAVLSS*LCSYST
Trigger: GGTGCTATAAGAGCATAGCCAACTTGATAGAACGGC...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
3UTR CAA 72 bp GTACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCATGGTCTTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: VQSEYLPVAQMH*IPQRSPWSCHL
Trigger: CAGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR TCA 90 bp AGAACTGTCAGTGTCAGGAACCAGGGGACAGCGCTGTACAAAGTGAGTATCTGCTTTCTTCACAACAGCTaGCATTGTCATTTTGCCATT +
Preference number: 4 (lower is better)
Translates to: RTVSVRNQGTALYKVSICFLHNS*HCHFAI
Trigger: AATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAA...GCAGATACTCACTTTGTACAGCGCTGTCCCCTGGTTCCTGACACTGACAGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR GCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCTACAAAGTGAGTATCTaGCAGTCGCACAAATGCATT +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVYKVSI*QSHKCI
Trigger: AATGCATTTGTGCGACTGGCAGATACTCACTTTGTA...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTCAAGGTGTTTCTTCTaGAATACCAGACGGAATATC +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISSRCFF*NTRRNI
Trigger: GATATTCCGTCTGGTATTGCAGAAGAAACACCTTGA...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATTCCAGTAAGAAGATaGTTTCATCCACCTGGATCT +
Preference number: 4 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNIPVRR*FHPPGS
Trigger: AGATCCAGGTGGATGAAACCATCTTCTTACTGGAAT...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTTCTTCACAACAGCTaGCATTGTCATTTTGCCATT +
Preference number: 4 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQFLHNS*HCHFAI
Trigger: AATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAA...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR TCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCTTTCTTCACAACAGCTaGCATTGTCATTTTGCCATT +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVFLHNS*HCHFAI
Trigger: AATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAA...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp TCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTGACAATCTCACCAAAATaGTCTTGCAGCAACAAAGAA +
Preference number: 4 (lower is better)
Translates to: SEKDAGFWLGMCSVEHQLTISPK*SCSNKE
Trigger: TTCTTTGTTGCTGCAAGAGCATTTTGGTGAGATTGT...CAACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR GCA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTACAATCTCACCAAAATaGTCTTGCAGCAACAAAGAA +
Preference number: 4 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISTISPK*SCSNKE
Trigger: TTCTTTGTTGCTGCAAGAGCATTTTGGTGAGATTGT...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CCA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCGACGCTAATGCTTTATaGAGGTTGATGACAAACATT +
Preference number: 4 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVDANAL*RLMTNI
Trigger: AATGTTTGTCATCAACCTCCATAAAGCATTAGCGTC...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp TCCAGCTGCTGCCGCTCGGGGGCTGTGATCATCTCCTCTATCTCCTaGAGCTGCACCTCCTCTGCACCCGTGGCCTGCATGGATGCCATG +
Preference number: 5 (lower is better)
Translates to: SSCCRSGAVIISSIS*SCTSSAPVACMDAM
Trigger: CATGGCATCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGATGATCACAGCCCCCGAGCGGCAGCAGCTGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp GGGGGCTGTGATCATCTCCTCTATCTCCTGCAGCTGCACCTCCTCTaGACCCGTGGCCTGCATGGATGCCATGATGGCTTCCACCCGCTG +
Preference number: 5 (lower is better)
Translates to: GGCDHLLYLLQLHLL*TRGLHGCHDGFHPL
Trigger: CAGCGGGTGGAAGCCATCATGGCATCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGATGATCACAGCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp TGCTGCCGCTCGGGGGCTGTGATCATCTCCTCTATCTCCTGCAGCTaGACCTCCTCTGCACCCGTGGCCTGCATGGATGCCATGATGGCT +
Preference number: 5 (lower is better)
Translates to: CCRSGAVIISSISCS*TSSAPVACMDAMMA
Trigger: AGCCATCATGGCATCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGATGATCACAGCCCCCGAGCGGCAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp CTGGCGTCCAACTTGTTAACGTTGCGTTTCAGTGTCTCCAGCTGCTaGCGCTCGGGGGCTGTGATCATCTCCTCTATCTCCTGCAGCTGC +
Preference number: 5 (lower is better)
Translates to: LASNLLTLRFSVSSC*RSGAVIISSISCSC
Trigger: GCAGCTGCAGGAGATAGAGGAGATGATCACAGCCCCCGAGCGGCAGCAGCTGGAGACACTGAAACGCAACGTTAACAAGTTGGACGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCTGCGCTCACGATTGCTaGGTCACGGAAGTGCTGGTG +
Preference number: 5 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLCAHDC*VTEVLV
Trigger: CACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCA...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp CTCGCTGCTTGTCTGGTCCATTCGGTTTGCCACTGCGCTCACGATTaGTTGGTCACGGAAGTGCTGGTGGAACCTGTCGAGGTTGACTTG +
Preference number: 5 (lower is better)
Translates to: LAACLVHSVCHCAHD*LVTEVLVEPVEVDL
Trigger: CAAGTCAACCTCGACAGGTTCCACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGACAAGCAGCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp AGGAACGAGGGAGGCGAGAGGGCCCAAGACAATAGAGCGGCTAACCGACCTCTGGCTGACATTGTCATTTaGCCATTCAGCAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: RNEGGERAQDNRAANRPLADIVI*PFSRSS
Trigger: GGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGC...CAGAGGTCGGTTAGCCGCTCTATTGTCTTGGGCCCTCTCGCCTCCCTCGTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CAA 90 bp GACAAGGGTTGGGGCGGGTGGCGGTGGCCCACGGTCAGAACTGTCAGTGTCAGGTCACAACAGCTGACATaGTCATTTTGCCATTCAGCA +
Preference number: 5 (lower is better)
Translates to: DKGWGGWRWPTVRTVSVRSQQLT*SFCHSA
Trigger: TGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGA...CCTGACACTGACAGTTCTGACCGTGGGCCACCGCCACCCGCCCCAACCCTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CAA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCCACTGCGCTCACGATaGCTTGGTCACGGAAGTGCT +
Preference number: 5 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLPLRSR*LGHGSA
Trigger: AGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTGCGCTCACGATTGCTaGGTCACGGAAGTGCTGGTG +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRCAHDC*VTEVLV
Trigger: CACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTGCGCTCACGATTGCTaGGTCACGGAAGTGCTGGTG +
Preference number: 5 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWCAHDC*VTEVLV
Trigger: CACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCA...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCCACTGCGCTCACGATaGCTTGGTCACGGAAGTGCT +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRPLRSR*LGHGSA
Trigger: AGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTCTGGTCCATTCGGTTaGCCACTGCGCTCACGATTG +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRSGPFG*PLRSRL
Trigger: CAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGCCTTCGCAGGGATCATaGCAAAGTCCTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWPSQGS*QSPPPA
Trigger: AGCAGGTGGAGGACTTTGCAATGATCCCTGCGAAGG...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGCCGCTTGTTCTCCTTaGTTTCAAACTGTCGCCGTT +
Preference number: 5 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLAACSP*FQTVAV
Trigger: AACGGCGACAGTTTGAAACAAAGGAGAACAAGCGGC...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 90 bp GTTGGCTATGCTCTTATAGCACCTGTGCAACAGCATCCTGGCAGCTaGGAGCACATTCACAGTGTACAGATAGAAGGTCCTGGACGGGGC +
Preference number: 5 (lower is better)
Translates to: VGYALIAPVQQHPGS*EHIHSVQIEGPGRG
Trigger: GCCCCGTCCAGGACCTTCTATCTGTACACTGTGAATGTGCTCTCAGCTGCCAGGATGCTGTTGCACAGGTGCTATAAGAGCATAGCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCCTGTCGAGGTTGACTaGCCAATAAATCCCATCGTC +
Preference number: 5 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLPVEVD*PINPIV
Trigger: GACGATGGGATTTATTGGCAAGTCAACCTCGACAGG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGCCACTGCGCTCACGATaGCTTGGTCACGGAAGTGCT +
Preference number: 5 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQPLRSR*LGHGSA
Trigger: AGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGG...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 90 bp TCTGCACCCGTGGCCTGCATGGATGCCATGATGGCTTCCACCCGCTaGGACTTTTCTAGTAGCCGCTTGTTCTCCTTTGTTTCAAACTGT +
Preference number: 5 (lower is better)
Translates to: SAPVACMDAMMASTR*DFSSSRLFSFVSNC
Trigger: ACAGTTTGAAACAAAGGAGAACAAGCGGCTACTAGAAAAGTCTCAGCGGGTGGAAGCCATCATGGCATCCATGCAGGCCACGGGTGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CCA 90 bp CACATTCACAGTGTACAGATAGAAGGTCCTGGACGGGGCGTGGTCTaGCGTCTTAGGAATTTCCTGCAGCAGGATGAAGTTTTCCGAGAG +
Preference number: 5 (lower is better)
Translates to: HIHSVQIEGPGRGVV*RLRNFLQQDEVFRE
Trigger: CTCTCGGAAAACTTCATCCTGCTGCAGGAAATTCCTAAGACGCCAGACCACGCCCCGTCCAGGACCTTCTATCTGTACACTGTGAATGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGGCTGACATTGTCATTTaGCCATTCAGCAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWADIVI*PFSRSS
Trigger: GGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGC...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCA +
Preference number: 5 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLVAQMH*IPQRSP
Trigger: TGGACTACGCTGAGGTATCAAATGCATTTGTGCGAC...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGCCTATCAAGCTCAGTTaGGGAACTAGGTACATGTCC +
Preference number: 5 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLPIKLS*GTRYMS
Trigger: GGACATGTACCTAGTTCCCAAACTGAGCTTGATAGG...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGTGTATCTTGGTTTCTaGGCCTTGGGCTCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRVYLGF*ALGSPV
Trigger: TACTGGAGAGCCCAAGGCCAAGAAACCAAGATACAC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCCTGTCGAGGTTGACTaGCCAATAAATCCCATCGTC +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRPVEVD*PINPIV
Trigger: GACGATGGGATTTATTGGCAAGTCAACCTCGACAGG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACTCTGGTCCATTCGGTTaGCCACTGCGCTCACGATTG +
Preference number: 5 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNSGPFG*PLRSRL
Trigger: CAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGA...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp CAGCAGGATGAAGTTTTCCGAGAGCATCTTGTACAGCATGTCCTTTaGCTCCTTCGCAGGGATCATTGCAAAGTCCTCCACCTGCTTCTG +
Preference number: 5 (lower is better)
Translates to: QQDEVFREHLVQHVL*LLRRDHCKVLHLLL
Trigger: CAGAAGCAGGTGGAGGACTTTGCAATGATCCCTGCGAAGGAGGCAAAGGACATGCTGTACAAGATGCTCTCGGAAAACTTCATCCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CCA 90 bp TCCGACGGGCAGGGACCTGAAGATCTGTGGGACAGAAGGAGATGCTaGAAACAGGGTCAGAACGCAGAATTGCTAAATGTAACTCATTGG +
Preference number: 5 (lower is better)
Translates to: SDGQGPEDLWDRRRC*KQGQNAELLNVTHW
Trigger: CCAATGAGTTACATTTAGCAATTCTGCGTTCTGACCCTGTTTCCAGCATCTCCTTCTGTCCCACAGATCTTCAGGTCCCTGCCCGTCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTGGTCCAGGGATGCTTTaGTGTCGTGGGCAATTACTC +
Preference number: 5 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISGPGML*CRGQLL
Trigger: GAGTAATTGCCCACGACACAAAAGCATCCCTGGACC...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGCCAGTCGCACAAATGCATTTGATACCTCAGCGTAGTCCATGGTCTTGCCATGGTCCAGGGATGCTTTaGTGTCGTGGGCAATTACTC +
Preference number: 5 (lower is better)
Translates to: LPVAQMHLIPQRSPWSCHGPGML*CRGQLL
Trigger: GAGTAATTGCCCACGACACAAAAGCATCCCTGGACC...ATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CAA 90 bp GCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCTCACAACAGCTGACATaGTCATTTTGCCATTCAGCA +
Preference number: 5 (lower is better)
Translates to: AKNSSSHHLLLLLLVLVLSQQLT*SFCHSA
Trigger: TGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGA...GAGGACGAGGACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCA +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRVAQMH*IPQRSP
Trigger: TGGACTACGCTGAGGTATCAAATGCATTTGTGCGAC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGCCTATCAAGCTCAGTTaGGGAACTAGGTACATGTCC +
Preference number: 5 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWPIKLS*GTRYMS
Trigger: GGACATGTACCTAGTTCCCAAACTGAGCTTGATAGG...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGCCTATCAAGCTCAGTTaGGGAACTAGGTACATGTCC +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRPIKLS*GTRYMS
Trigger: GGACATGTACCTAGTTCCCAAACTGAGCTTGATAGG...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp CTCCTCCTCGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGTGTTATCTGTGTATCTaGGTTTCTTGGCCTTGGGCT +
Preference number: 5 (lower is better)
Translates to: LLLVLVLLDLLDLLRRMLCYLCI*VSWPWA
Trigger: AGCCCAAGGCCAAGAAACCAAGATACACAGATAACA...CAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACGAGGAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTCTGGTGAGGGCTCCTaGTTATCTGTGTATCTTGGT +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRSGEGS*LSVYLG
Trigger: ACCAAGATACACAGATAACAAGGAGCCCTCACCAGA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAATCTGGTCCATTCGGTTaGCCACTGCGCTCACGATTG +
Preference number: 5 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKSGPFG*PLRSRL
Trigger: CAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGA...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAACCTTCGCAGGGATCATaGCAAAGTCCTCCACCTGCT +
Preference number: 5 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKPSQGS*QSPPPA
Trigger: AGCAGGTGGAGGACTTTGCAATGATCCCTGCGAAGG...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 90 bp ACAGCGCTGTACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCATGGTCTTGCCATCCTCCATGGTCTC +
Preference number: 5 (lower is better)
Translates to: TALYKVSICQSHKCI*YLSVVHGLAILHGL
Trigger: GAGACCATGGAGGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTACAGCGCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATCTCACCAAAATGCTCTaGCAGCAACAAAGAACACAG +
Preference number: 5 (lower is better)
Translates to: GSVQESAAELGMVVYAFNLTKML*QQQRTQ
Trigger: CTGTGTTCTTTGTTGCTGCAAGAGCATTTTGGTGAG...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTGCTGACATTGTCATTTaGCCATTCAGCAGGAGCTCC +
Preference number: 5 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISADIVI*PFSRSS
Trigger: GGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGC...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp AAATTCACTGCAAAGAACTCATCTAGTCACCACCTCCTCCTCCTCCTCCTCGTCGTGTATCTTGGTTTCTaGGCCTTGGGCTCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: KFTAKNSSSHHLLLLLLVVYLGF*ALGSPV
Trigger: TACTGGAGAGCCCAAGGCCAAGAAACCAAGATACAC...GACGAGGAGGAGGAGGAGGAGGTGGTGACTAGATGAGTTCTTTGCAGTGAATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACGTGTATCTTGGTTTCTaGGCCTTGGGCTCTCCAGTA +
Preference number: 5 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNVYLGF*ALGSPV
Trigger: TACTGGAGAGCCCAAGGCCAAGAAACCAAGATACAC...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTGTTATCTGTGTATCTaGGTTTCTTGGCCTTGGGCT +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRCYLCI*VSWPWA
Trigger: AGCCCAAGGCCAAGAAACCAAGATACACAGATAACA...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGCCTGTCGAGGTTGACTaGCCAATAAATCCCATCGTC +
Preference number: 5 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQPVEVD*PINPIV
Trigger: GACGATGGGATTTATTGGCAAGTCAACCTCGACAGG...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGGCCGCTTGTTCTCCTTaGTTTCAAACTGTCGCCGTT +
Preference number: 5 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQAACSP*FQTVAV
Trigger: AACGGCGACAGTTTGAAACAAAGGAGAACAAGCGGC...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 90 bp CTCCATGGTCTCTGTGAGTCGGTCGGCTACTTTCTTCACAACAGCTaGCATTGTCATTTTGCCATTCAGCAGGAGCTCCTCAACAATCAG +
Preference number: 5 (lower is better)
Translates to: LHGLCESVGYFLHNS*HCHFAIQQELLNNQ
Trigger: CTGATTGTTGAGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAAGTAGCCGACCGACTCACAGAGACCATGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS TCA 90 bp TTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTACTaGTCGAGAACCTGTTTAGAGATGTTATATCCGACGGGCAGGGAC +
Preference number: 5 (lower is better)
Translates to: FPINSSGSSASSVRY*SRTCLEMLYPTGRD
Trigger: GTCCCTGCCCGTCGGATATAACATCTCTAAACAGGTTCTCGATCAGTACCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp ATGTCCTTTGCCTCCTTCGCAGGGATCATTGCAAAGTCCTCCACCTaGTTCTGCTCAAGGTGTTTCTTCTGCAATACCAGACGGAATATC +
Preference number: 5 (lower is better)
Translates to: MSFASFAGIIAKSST*FCSRCFFCNTRRNI
Trigger: GATATTCCGTCTGGTATTGCAGAAGAAACACCTTGAGCAGAAGCAGGTGGAGGACTTTGCAATGATCCCTGCGAAGGAGGCAAAGGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 90 bp ATATCCGACGGGCAGGGACCTGAAGATCTGTGGGACAGAAGGAGATaGTGGAAACAGGGTCAGAACGCAGAATTGCTAAATGTAACTCAT +
Preference number: 5 (lower is better)
Translates to: ISDGQGPEDLWDRRR*WKQGQNAELLNVTH
Trigger: ATGAGTTACATTTAGCAATTCTGCGTTCTGACCCTGTTTCCAGCATCTCCTTCTGTCCCACAGATCTTCAGGTCCCTGCCCGTCGGATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp AGAACTGTCAGTGTCAGGAACCAGGGGACAGCGCTGTACAAAGTGAGTATCTGCCTCACCAAAATGCTCTaGCAGCAACAAAGAACACAG +
Preference number: 5 (lower is better)
Translates to: RTVSVRNQGTALYKVSICLTKML*QQQRTQ
Trigger: CTGTGTTCTTTGTTGCTGCAAGAGCATTTTGGTGAG...GCAGATACTCACTTTGTACAGCGCTGTCCCCTGGTTCCTGACACTGACAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125183.2
CDS-3UTR CAA 90 bp CGTCCTCGTCCTCCTCGATCTGCTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTCACAACAGCTGACATaGTCATTTTGCCATTCAGCA +
Preference number: 5 (lower is better)
Translates to: RPRPPRSARSSEKDAGFWSQQLT*SFCHSA
Trigger: TGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGA...CCAGAAACCAGCATCCTTCTCAGAAGATCTAGCAGATCGAGGAGGACGAGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCA +
Preference number: 5 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNVAQMH*IPQRSP
Trigger: TGGACTACGCTGAGGTATCAAATGCATTTGTGCGAC...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTAGATCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACTCTGGTGAGGGCTCCTaGTTATCTGTGTATCTTGGT +
Preference number: 5 (lower is better)
Translates to: LDLLRRMLVSGWGCAQWNSGEGS*LSVYLG
Trigger: ACCAAGATACACAGATAACAAGGAGCCCTCACCAGA...GTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGATCTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTCTGGTGAGGGCTCCTaGTTATCTGTGTATCTTGGT +
Preference number: 5 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQSGEGS*LSVYLG
Trigger: ACCAAGATACACAGATAACAAGGAGCCCTCACCAGA...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTGTCGCCAGACTTTCCAATAAACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGGGTCAGAACGCAGAATaGCTAAATGTAACTCATTGG +
Preference number: 5 (lower is better)
Translates to: LSPDFPINSSGSSASSVRGQNAE*LNVTHW
Trigger: CCAATGAGTTACATTTAGCAATTCTGCGTTCTGACC...CCTCACGCTGCTGGCAGATGACCCACTAGAGTTTATTGGAAAGTCTGGCGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS-3UTR CAA 90 bp TCTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTGTTATCTGTGTATCTaGGTTTCTTGGCCTTGGGCT +
Preference number: 5 (lower is better)
Translates to: SSEKDAGFWLGMCSVEHQCYLCI*VSWPWA
Trigger: AGCCCAAGGCCAAGAAACCAAGATACACAGATAACA...CTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp GGGTCAGTACAAGAATCTGCAGCCGAGCTGGGCATGGTGGTGTACGCCTTTAATTTTTCTAGTAGCCGCTaGTTCTCCTTTGTTTCAAAC +
Preference number: 5 (lower is better)
Translates to: GSVQESAAELGMVVYAFNFSSSR*FSFVSN
Trigger: GTTTGAAACAAAGGAGAACAAGCGGCTACTAGAAAA...ATTAAAGGCGTACACCACCATGCCCAGCTCGGCTGCAGATTCTTGTACTGACCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 90 bp TCTTGGTTTCTTGGCCTTGGGCTCTCCAGTAGCATCTTCATCAGATaGTCTCCTCCTCTTACCTTTTCCTATCAAGCTCAGTTTGGGAAC +
Preference number: 5 (lower is better)
Translates to: SWFLGLGLSSSIFIR*SPPLTFSYQAQFGN
Trigger: GTTCCCAAACTGAGCTTGATAGGAAAAGGTAAGAGGAGGAGATCATCTGATGAAGATGCTACTGGAGAGCCCAAGGCCAAGAAACCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp GTGAGTTCCAGGACATCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAACTCACCAAAATGCTCTaGCAGCAACAAAGAACACAG +
Preference number: 5 (lower is better)
Translates to: VSSRTSRATQRNPVSKKKLTKML*QQQRTQ
Trigger: CTGTGTTCTTTGTTGCTGCAAGAGCATTTTGGTGAG...TTTCTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CCA 90 bp GTGCTCTCAATGTATGATTCCAGTAAGAAGATGGTTTCATCCACCTaGATCTCACTGGCGTCCAACTTGTTAACGTTGCGTTTCAGTGTC +
Preference number: 5 (lower is better)
Translates to: VLSMYDSSKKMVSST*ISLASNLLTLRFSV
Trigger: GACACTGAAACGCAACGTTAACAAGTTGGACGCCAGTGAGATCCAGGTGGATGAAACCATCTTCTTACTGGAATCATACATTGAGAGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS-3UTR CAA 90 bp CTTCTGAGAAGGATGCTGGTTTCTGGTTGGGGATGTGCTCAGTGGAACATCAGTTTTTCTAGTAGCCGCTaGTTCTCCTTTGTTTCAAAC +
Preference number: 5 (lower is better)
Translates to: LLRRMLVSGWGCAQWNISFSSSR*FSFVSN
Trigger: GTTTGAAACAAAGGAGAACAAGCGGCTACTAGAAAA...ACTGATGTTCCACTGAGCACATCCCCAACCAGAAACCAGCATCCTTCTCAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 72 bp TCGGGGGCTGTGATCATCTCCTCTATCTCCTGCAGCTaGACCTCCTCTGCACCCGTGGCCTGCATGGATGCC +
Preference number: 6 (lower is better)
Translates to: SGAVIISSISCS*TSSAPVACMDA
Trigger: GGCATCCATGCAGGCCACGGGTGCAGAGGAGGTGCAGCTGCAGGAGATAGAGGAGATGATCACAGCCCCCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CCA 72 bp CGGGGATACCTAAGCATCCTCAGTACCCGGCTGCACTaGGCTTCATACTCCACCACACCGCGCTTGTGCACA +
Preference number: 6 (lower is better)
Translates to: RGYLSILSTRLH*ASYSTTPRLCT
Trigger: TGTGCACAAGCGCGGTGTGGTGGAGTATGAAGCCCAGTGCAGCCGGGTACTGAGGATGCTTAGGTATCCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS GCA 72 bp CCGCACGATCTCGCTGCTTGTCTGGTCCATTCGGTTTaGCACTGCGCTCACGATTGCTTGGTCACGGAAGTG +
Preference number: 6 (lower is better)
Translates to: PHDLAACLVHSV*HCAHDCLVTEV
Trigger: CACTTCCGTGACCAAGCAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGACAAGCAGCGAGATCGTGCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS CCA 72 bp ATCCGGAGCATCGTCCGCACGATCTCGCTGCTTGTCTaGTCCATTCGGTTTGCCACTGCGCTCACGATTGCT +
Preference number: 6 (lower is better)
Translates to: IRSIVRTISLLV*SIRFATALTIA
Trigger: AGCAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGACAAGCAGCGAGATCGTGCGGACGATGCTCCGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS GCA 72 bp TGTCTGGTCCATTCGGTTTGCCACTGCGCTCACGATTaGTTGGTCACGGAAGTGCTGGTGGAACCTGTCGAG +
Preference number: 6 (lower is better)
Translates to: CLVHSVCHCAHD*LVTEVLVEPVE
Trigger: CTCGACAGGTTCCACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS GCA 72 bp GATCTCGCTGCTTGTCTGGTCCATTCGGTTTGCCACTaGGCTCACGATTGCTTGGTCACGGAAGTGCTGGTG +
Preference number: 6 (lower is better)
Translates to: DLAACLVHSVCH*AHDCLVTEVLV
Trigger: CACCAGCACTTCCGTGACCAAGCAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGACAAGCAGCGAGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS CAA 72 bp TCCGCACGATCTCGCTGCTTGTCTGGTCCATTCGGTTaGCCACTGCGCTCACGATTGCTTGGTCACGGAAGT +
Preference number: 6 (lower is better)
Translates to: SARSRCLSGPFG*PLRSRLLGHGS
Trigger: ACTTCCGTGACCAAGCAATCGTGAGCGCAGTGGCAAACCGAATGGACCAGACAAGCAGCGAGATCGTGCGGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS GCA 72 bp CTGGACGGGGCGTGGTCTGGCGTCTTAGGAATTTCCTaGAGCAGGATGAAGTTTTCCGAGAGCATCTTGTAC +
Preference number: 6 (lower is better)
Translates to: LDGAWSGVLGIS*SRMKFSESILY
Trigger: GTACAAGATGCTCTCGGAAAACTTCATCCTGCTGCAGGAAATTCCTAAGACGCCAGACCACGCCCCGTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 72 bp AACTTGTTAACGTTGCGTTTCAGTGTCTCCAGCTGCTaGCGCTCGGGGGCTGTGATCATCTCCTCTATCTCC +
Preference number: 6 (lower is better)
Translates to: NLLTLRFSVSSC*RSGAVIISSIS
Trigger: GGAGATAGAGGAGATGATCACAGCCCCCGAGCGGCAGCAGCTGGAGACACTGAAACGCAACGTTAACAAGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 90 bp AGTAAGAAGATGGTTTCATCCACCTGGATCTCACTGGCGTCCAACTaGTTAACGTTGCGTTTCAGTGTCTCCAGCTGCTGCCGCTCGGGG +
Preference number: 6 (lower is better)
Translates to: SKKMVSSTWISLASN*LTLRFSVSSCCRSG
Trigger: CCCCGAGCGGCAGCAGCTGGAGACACTGAAACGCAACGTTAACAAGTTGGACGCCAGTGAGATCCAGGTGGATGAAACCATCTTCTTACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 72 bp CGTAGTCCATGGTCTTGCCATCCTCCATGGTCTCTGTaGGTCGGTCGGCTACTTTCTTCACAACAGCTGACA +
Preference number: 6 (lower is better)
Translates to: RSPWSCHPPWSL*VGRLLSSQQLT
Trigger: TGTCAGCTGTTGTGAAGAAAGTAGCCGACCGACTCACAGAGACCATGGAGGATGGCAAGACCATGGACTACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS TCA 72 bp GTGGCCTGCATGGATGCCATGATGGCTTCCACCCGCTaGGACTTTTCTAGTAGCCGCTTGTTCTCCTTTGTT +
Preference number: 6 (lower is better)
Translates to: VACMDAMMASTR*DFSSSRLFSFV
Trigger: AACAAAGGAGAACAAGCGGCTACTAGAAAAGTCTCAGCGGGTGGAAGCCATCATGGCATCCATGCAGGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CCA 72 bp AGTGTACAGATAGAAGGTCCTGGACGGGGCGTGGTCTaGCGTCTTAGGAATTTCCTGCAGCAGGATGAAGTT +
Preference number: 6 (lower is better)
Translates to: SVQIEGPGRGVV*RLRNFLQQDEV
Trigger: AACTTCATCCTGCTGCAGGAAATTCCTAAGACGCCAGACCACGCCCCGTCCAGGACCTTCTATCTGTACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS GCA 72 bp GGGCAGGGACCTGAAGATCTGTGGGACAGAAGGAGATaGTGGAAACAGGGTCAGAACGCAGAATTGCTAAAT +
Preference number: 6 (lower is better)
Translates to: GQGPEDLWDRRR*WKQGQNAELLN
Trigger: ATTTAGCAATTCTGCGTTCTGACCCTGTTTCCAGCATCTCCTTCTGTCCCACAGATCTTCAGGTCCCTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128918.2
CDS CCA 72 bp TCCAGAGTTGCAGTGGCTAGGGACGCTAATGCTTTATaGAGGTTGATGACAAACATTCCTCCGCCACTGTCG +
Preference number: 6 (lower is better)
Translates to: SRVAVARDANAL*RLMTNIPPPLS
Trigger: CGACAGTGGCGGAGGAATGTTTGTCATCAACCTCCATAAAGCATTAGCGTCCCTAGCCACTGCAACTCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 72 bp TGTACAGCATGTCCTTTGCCTCCTTCGCAGGGATCATaGCAAAGTCCTCCACCTGCTTCTGCTCAAGGTGTT +
Preference number: 6 (lower is better)
Translates to: CTACPLPPSQGS*QSPPPASAQGV
Trigger: AACACCTTGAGCAGAAGCAGGTGGAGGACTTTGCAATGATCCCTGCGAAGGAGGCAAAGGACATGCTGTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 72 bp ATGGTTTCATCCACCTGGATCTCACTGGCGTCCAACTaGTTAACGTTGCGTTTCAGTGTCTCCAGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: MVSSTWISLASN*LTLRFSVSSCC
Trigger: GCAGCAGCTGGAGACACTGAAACGCAACGTTAACAAGTTGGACGCCAGTGAGATCCAGGTGGATGAAACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 90 bp GTGAGTCGGTCGGCTACTTTCTTCACAACAGCTGACATTGTCATTTaGCCATTCAGCAGGAGCTCCTCAACAATCAGCTCTCCGGTGTCA +
Preference number: 6 (lower is better)
Translates to: VSRSATFFTTADIVI*PFSRSSSTISSPVS
Trigger: TGACACCGGAGAGCTGATTGTTGAGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAAGTAGCCGACCGACTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS CAA 90 bp GACAGCGCTGTACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCATGGTCTTGCCATCCTCCATGGTCT +
Preference number: 6 (lower is better)
Translates to: DSAVQSEYLPVAQMH*IPQRSPWSCHPPWS
Trigger: AGACCATGGAGGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTACAGCGCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS CAA 90 bp CCATCGTCTGGTGAGGGCTCCTTGTTATCTGTGTATCTTGGTTTCTaGGCCTTGGGCTCTCCAGTAGCATCTTCATCAGATGATCTCCTC +
Preference number: 6 (lower is better)
Translates to: PSSGEGSLLSVYLGF*ALGSPVASSSDDLL
Trigger: GAGGAGATCATCTGATGAAGATGCTACTGGAGAGCCCAAGGCCAAGAAACCAAGATACACAGATAACAAGGAGCCCTCACCAGACGATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS TCA 72 bp CTCTGTGAGTCGGTCGGCTACTTTCTTCACAACAGCTaGCATTGTCATTTTGCCATTCAGCAGGAGCTCCTC +
Preference number: 6 (lower is better)
Translates to: LCESVGYFLHNS*HCHFAIQQELL
Trigger: GAGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAAGTAGCCGACCGACTCACAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS TCA 72 bp GCTCTTATAGCACCTGTGCAACAGCATCCTGGCAGCTaGGAGCACATTCACAGTGTACAGATAGAAGGTCCT +
Preference number: 6 (lower is better)
Translates to: ALIAPVQQHPGS*EHIHSVQIEGP
Trigger: AGGACCTTCTATCTGTACACTGTGAATGTGCTCTCAGCTGCCAGGATGCTGTTGCACAGGTGCTATAAGAGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 72 bp ATTTCCTGCAGCAGGATGAAGTTTTCCGAGAGCATCTaGTACAGCATGTCCTTTGCCTCCTTCGCAGGGATC +
Preference number: 6 (lower is better)
Translates to: ISCSRMKFSESI*YSMSFASFAGI
Trigger: GATCCCTGCGAAGGAGGCAAAGGACATGCTGTACAAGATGCTCTCGGAAAACTTCATCCTGCTGCAGGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 72 bp CTTGGCCTTGGGCTCTCCAGTAGCATCTTCATCAGATaGTCTCCTCCTCTTACCTTTTCCTATCAAGCTCAG +
Preference number: 6 (lower is better)
Translates to: LGLGLSSSIFIR*SPPLTFSYQAQ
Trigger: CTGAGCTTGATAGGAAAAGGTAAGAGGAGGAGATCATCTGATGAAGATGCTACTGGAGAGCCCAAGGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS TCA 72 bp AACTCTAGTGGGTCATCTGCCAGCAGCGTGAGGTACTaGTCGAGAACCTGTTTAGAGATGTTATATCCGACG +
Preference number: 6 (lower is better)
Translates to: NSSGSSASSVRY*SRTCLEMLYPT
Trigger: CGTCGGATATAACATCTCTAAACAGGTTCTCGATCAGTACCTCACGCTGCTGGCAGATGACCCACTAGAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 72 bp GGTGAGGGCTCCTTGTTATCTGTGTATCTTGGTTTCTaGGCCTTGGGCTCTCCAGTAGCATCTTCATCAGAT +
Preference number: 6 (lower is better)
Translates to: GEGSLLSVYLGF*ALGSPVASSSD
Trigger: ATCTGATGAAGATGCTACTGGAGAGCCCAAGGCCAAGAAACCAAGATACACAGATAACAAGGAGCCCTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS CAA 90 bp GTCTTAGGAATTTCCTGCAGCAGGATGAAGTTTTCCGAGAGCATCTaGTACAGCATGTCCTTTGCCTCCTTCGCAGGGATCATTGCAAAG +
Preference number: 6 (lower is better)
Translates to: VLGISCSRMKFSESI*YSMSFASFAGIIAK
Trigger: CTTTGCAATGATCCCTGCGAAGGAGGCAAAGGACATGCTGTACAAGATGCTCTCGGAAAACTTCATCCTGCTGCAGGAAATTCCTAAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS TCA 72 bp TACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTTaGTACCTCAGCGTAGTCCATGGTCTTGCCATCCTC +
Preference number: 6 (lower is better)
Translates to: YKVSICQSHKCI*YLSVVHGLAIL
Trigger: GAGGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS GCA 72 bp CGGCTACTTTCTTCACAACAGCTGACATTGTCATTTTaGCATTCAGCAGGAGCTCCTCAACAATCAGCTCTC +
Preference number: 6 (lower is better)
Translates to: RLLSSQQLTLSF*HSAGAPQQSAL
Trigger: GAGAGCTGATTGTTGAGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAAGTAGCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS CAA 72 bp GTACAAAGTGAGTATCTGCCAGTCGCACAAATGCATTaGATACCTCAGCGTAGTCCATGGTCTTGCCATCCT +
Preference number: 6 (lower is better)
Translates to: VQSEYLPVAQMH*IPQRSPWSCHP
Trigger: AGGATGGCAAGACCATGGACTACGCTGAGGTATCAAATGCATTTGTGCGACTGGCAGATACTCACTTTGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS TCA 72 bp GTCGAGGTTGACTTGCCAATAAATCCCATCGTCTGGTaGGGGCTCCTTGTTATCTGTGTATCTTGGTTTCTT +
Preference number: 6 (lower is better)
Translates to: VEVDLPINPIVW*GLLVICVSWFL
Trigger: AAGAAACCAAGATACACAGATAACAAGGAGCCCTCACCAGACGATGGGATTTATTGGCAAGTCAACCTCGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8
CDS CCA 72 bp GATGCTTTTGTGTCGTGGGCAATTACTCTAAGTGGCTaGCTTCCAGTTCTGACTAGGTGGACTCCAATTTTT +
Preference number: 6 (lower is better)
Translates to: DAFVSWAITLSG*LPVLTRWTPIF
Trigger: AAAAATTGGAGTCCACCTAGTCAGAACTGGAAGCCAGCCACTTAGAGTAATTGCCCACGACACAAAAGCATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS CCA 72 bp TCTCCTTTGTTTCAAACTGTCGCCGTTCTATCAAGTTaGCTATGCTCTTATAGCACCTGTGCAACAGCATCC +
Preference number: 6 (lower is better)
Translates to: SPLFQTVAVLSS*LCSYSTCATAS
Trigger: GGATGCTGTTGCACAGGTGCTATAAGAGCATAGCCAACTTGATAGAACGGCGACAGTTTGAAACAAAGGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CCA 72 bp TCATGGTGCTCTCAATGTATGATTCCAGTAAGAAGATaGTTTCATCCACCTGGATCTCACTGGCGTCCAACT +
Preference number: 6 (lower is better)
Translates to: SWCSQCMIPVRR*FHPPGSHWRPT
Trigger: AGTTGGACGCCAGTGAGATCCAGGTGGATGAAACCATCTTCTTACTGGAATCATACATTGAGAGCACCATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 72 bp TCGGCTACTTTCTTCACAACAGCTGACATTGTCATTTaGCCATTCAGCAGGAGCTCCTCAACAATCAGCTCT +
Preference number: 6 (lower is better)
Translates to: SATFFTTADIVI*PFSRSSSTISS
Trigger: AGAGCTGATTGTTGAGGAGCTCCTGCTGAATGGCAAAATGACAATGTCAGCTGTTGTGAAGAAAGTAGCCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000029741.9
ENSMUST00000125183.2
ENSMUST00000141377.8
ENSMUST00000154679.8
CDS CCA 72 bp ATGTATGATTCCAGTAAGAAGATGGTTTCATCCACCTaGATCTCACTGGCGTCCAACTTGTTAACGTTGCGT +
Preference number: 6 (lower is better)
Translates to: MYDSSKKMVSST*ISLASNLLTLR
Trigger: ACGCAACGTTAACAAGTTGGACGCCAGTGAGATCCAGGTGGATGAAACCATCTTCTTACTGGAATCATACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029741.9
ENSMUST00000154679.8
CDS CAA 72 bp GATCTCCTCCTCTTACCTTTTCCTATCAAGCTCAGTTaGGGAACTAGGTACATGTCCTTTTCATTAATGACA +
Preference number: 6 (lower is better)
Translates to: DLLLLPFPIKLS*GTRYMSFSLMT
Trigger: TGTCATTAATGAAAAGGACATGTACCTAGTTCCCAAACTGAGCTTGATAGGAAAAGGTAAGAGGAGGAGATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029741.9
ENSMUST00000128918.2
ENSMUST00000154679.8