Pregenerated sensors for POLR2M (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032199Ensembl transcript IDs: ENSMUST00000034720.12, ENSMUST00000163972.2, ENSMUST00000169804.2
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCAAACGTGAACGCCCTGTACAGGGACCTATCATCGAGACAGCAATaGGTTCAAGCCAAGGGAGGCCAGGAGCAGCTCCCCACACCAGCT | + |
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Preference number: 1 (lower is better) Translates to: PNVNALYRDLSSRQQ*VQAKGGQEQLPTPA Trigger: AGCTGGTGTGGGGAGCTGCTCCTGGCCTCCCTTGGCTTGAACTCATTGCTGTCTCGATGATAGGTCCCTGTACAGGGCGTTCACGTTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR GCA 90 bp | GGAAGACAGCAGTCACCCCAGAGAGACAGGATCAGCCAATGCACTTaGTGTAACATTTCTGAGTGTCTTCCACAGTGTTTCACATCCAGC | + |
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Preference number: 1 (lower is better) Translates to: GRQQSPQRDRISQCT*CNISECLPQCFTSS Trigger: GCTGGATGTGAAACACTGTGGAAGACACTCAGAAATGTTACAGCAAGTGCATTGGCTGATCCTGTCTCTCTGGGGTGACTGCTGTCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR CCA 90 bp | AGTGTTTCACATCCAGCATCTCAGGAACATGTCCATGCAGGCACGTaGACCATTCTTTACACTTCATTTCTTGAGCGAGGGAACCAGGCC | + |
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Preference number: 1 (lower is better) Translates to: SVSHPASQEHVHAGT*TILYTSFLERGNQA Trigger: GGCCTGGTTCCCTCGCTCAAGAAATGAAGTGTAAAGAATGGTCCACGTGCCTGCATGGACATGTTCCTGAGATGCTGGATGTGAAACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR-3UTR TCA 90 bp | CAGCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCAGTTCGATGAGCCAATaGGAGCTCTGCAGCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: QLPTPAQKTLPRPAPLQRSSMSQ*ELCSQL Trigger: GAGCTGGCTGCAGAGCTCTCATTGGCTCATCGAACT...GCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR-3UTR TCA 90 bp | TCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTAAACTGTGCAAGCTGTaGAGAGCGTCTTCTGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: SPHQLRRPSPAQHLFSAPKLCKL*RASSER Trigger: TCTTTCAGAAGACGCTCTTCACAGCTTGCACAGTTT...AGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR-3UTR GCA 90 bp | CCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTTGGACAGGATCAGCCAATaGACTTGCTGTAACATTTCT | + |
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Preference number: 2 (lower is better) Translates to: PTPAQKTLPRPAPLQRSLDRISQ*TCCNIS Trigger: AGAAATGTTACAGCAAGTGCATTGGCTGATCCTGTC...CAAGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR-3UTR TCA 90 bp | CAGGAACATGTCCATGCAGGCACGTGGACCATTCTTTACACTTCATTTCTTGAGAGTTCGATGAGCCAATaGGAGCTCTGCAGCCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: QEHVHAGTWTILYTSFLESSMSQ*ELCSQL Trigger: GAGCTGGCTGCAGAGCTCTCATTGGCTCATCGAACT...CTCAAGAAATGAAGTGTAAAGAATGGTCCACGTGCCTGCATGGACATGTTCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGTCTCACTCTGCAGTTCTGGAAAGTTCTCAGTGCTGGTGTTTTCTTCTGAGTCGGATGTGGGCAGCTaGGCTGCTGTTTACTGTGTA | + |
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Preference number: 2 (lower is better) Translates to: GVSLCSSGKFSVLVFSSESDVGS*AAVYCV Trigger: TACACAGTAAACAGCAGCCCAGCTGCCCACATCCGA...CTCAGAAGAAAACACCAGCACTGAGAACTTTCCAGAACTGCAGAGTGAGACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| 3UTR-3UTR TCA 90 bp | GACAGCAGTCACCCCAGAGAGACAGGATCAGCCAATGCACTTGCTGTAACATTTGTGAAGAGCGTCTTCTaGAAGACAAACTGGGTTCTT | + |
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Preference number: 2 (lower is better) Translates to: DSSHPRETGSANALAVTFVKSVF*KTNWVL Trigger: AAGAACCCAGTTTGTCTTTCAGAAGACGCTCTTCAC...AAATGTTACAGCAAGTGCATTGGCTGATCCTGTCTCTCTGGGGTGACTGCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR TCA 72 bp | AACAGAGTGCTGGGGGAGATGCTCCTTAACTTCGGATaGGGGCGCCCGGGCTCGGATGTGGGCAGCTGGGCT | + |
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Preference number: 3 (lower is better) Translates to: NRVLGEMLLNFG*GRPGSDVGSWA Trigger: AGCCCAGCTGCCCACATCCGAGCCCGGGCGCCCTCATCCGAAGTTAAGGAGCATCTCCCCCAGCACTCTGTT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| 3UTR GCA 72 bp | ATGAGGGCGCCCGGGCTCGGATGTGGGCAGCTGGGCTaGTGTTTACTGTGTAGCCAGCCTCCAAAGTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: MRAPGLGCGQLG*CLLCSQPPKSL Trigger: AAGAGACTTTGGAGGCTGGCTACACAGTAAACAGCAGCCCAGCTGCCCACATCCGAGCCCGGGCGCCCTCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| 3UTR TCA 72 bp | AACGCCCTGTACAGGGACCTATCATCGAGACAGCAATaGGTTCAAGCCAAGGGAGGCCAGGAGCAGCTCCCC | + |
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Preference number: 3 (lower is better) Translates to: NALYRDLSSRQQ*VQAKGGQEQLP Trigger: GGGGAGCTGCTCCTGGCCTCCCTTGGCTTGAACTCATTGCTGTCTCGATGATAGGTCCCTGTACAGGGCGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR TCA 72 bp | ACTGTCGATGCTGCTGGAGATCTCTTCCTCTTGACTTaGAACAGAGTGCTGGGGGAGATGCTCCTTAACTTC | + |
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Preference number: 3 (lower is better) Translates to: TVDAAGDLFLLT*NRVLGEMLLNF Trigger: GAAGTTAAGGAGCATCTCCCCCAGCACTCTGTTTCAAGTCAAGAGGAAGAGATCTCCAGCAGCATCGACAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| 3UTR TCA 72 bp | AAGAGACTGTCGATGCTGCTGGAGATCTCTTCCTCTTaGCTTGAAACAGAGTGCTGGGGGAGATGCTCCTTA | + |
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Preference number: 3 (lower is better) Translates to: KRLSMLLEISSS*LETECWGRCSL Trigger: TAAGGAGCATCTCCCCCAGCACTCTGTTTCAAGTCAAGAGGAAGAGATCTCCAGCAGCATCGACAGTCTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| 3UTR CCA 72 bp | CATCCAGCATCTCAGGAACATGTCCATGCAGGCACGTaGACCATTCTTTACACTTCATTTCTTGAGCGAGGG | + |
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Preference number: 3 (lower is better) Translates to: HPASQEHVHAGT*TILYTSFLERG Trigger: CCCTCGCTCAAGAAATGAAGTGTAAAGAATGGTCCACGTGCCTGCATGGACATGTTCCTGAGATGCTGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| 3UTR-3UTR CAA 90 bp | GCAGTTCTGGAAAGTTCTCAGTGCTGGTGTTTTCTTCTGAGGGTTCACTCTGGTTCTCTTCCTCTTGACTaGAAACAGAGTGCTGGGGGA | + |
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Preference number: 3 (lower is better) Translates to: AVLESSQCWCFLLRVHSGSLPLD*KQSAGG Trigger: TCCCCCAGCACTCTGTTTCAAGTCAAGAGGAAGAGA...ACCAGAGTGAACCCTCAGAAGAAAACACCAGCACTGAGAACTTTCCAGAACTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| 3UTR GCA 72 bp | CAGTGTTTCACATCCAGCATCTCAGGAACATGTCCATaGAGGCACGTGGACCATTCTTTACACTTCATTTCT | + |
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Preference number: 3 (lower is better) Translates to: QCFTSSISGTCP*RHVDHSLHFIS Trigger: AGAAATGAAGTGTAAAGAATGGTCCACGTGCCTGCATGGACATGTTCCTGAGATGCTGGATGTGAAACACTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | GCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCTGTGCAGGCAGGTGGTaGAGCGGAAGGAGGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: APHTSSEDPPPPSTSSALCAGRW*SGRRRA Trigger: AGCGCGCCTCCTTCCGCTCCACCACCTGCCTGCACA...GAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | CCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTTGAGCTCCGCCGAACTCTaGCGCCCCAAGTCCTCGGGA | + |
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Preference number: 4 (lower is better) Translates to: PTPAQKTLPRPAPLQRSLSSAEL*RPKSSG Trigger: TCCCGAGGACTTGGGGCGGCAGAGTTCGGCGGAGCT...CAAGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR CCA 90 bp | CCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTTGGCCCGGGCTCGGATGTaGGCAGCTGGGCTGCTGTTT | + |
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Preference number: 4 (lower is better) Translates to: PTPAQKTLPRPAPLQRSLARARM*AAGLLF Trigger: AAACAGCAGCCCAGCTGCCCACATCCGAGCCCGGGC...CAAGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | TCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTGGCCAGTTTCTGTGCTaGGAGCTTTGCCTGCATCTC | + |
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Preference number: 4 (lower is better) Translates to: SPHQLRRPSPAQHLFSAPGQFLC*ELCLHL Trigger: GAGATGCAGGCAAAGCTCGCAGCACAGAAACTGGCC...AGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR TCA 90 bp | CCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTTGCTGGTGTTTTCTTCTaGGGGTTCACTCTGGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: PHTSSEDPPPPSTSSALLAGVFF*GFTLVC Trigger: GCAGACCAGAGTGAACCCTCAGAAGAAAACACCAGC...AAGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | AGCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCGGAAGGAGGCGCGCTaGTGTGATATCATCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: SSPHQLRRPSPAQHLFSARKEAR*CDIIKM Trigger: CATCTTGATGATATCACAGCAGCGCGCCTCCTTCCG...AGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | CAGCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCCTGTGCTGCGAGCTTTaGCTGCATCTCCTCATAATT | + |
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Preference number: 4 (lower is better) Translates to: QLPTPAQKTLPRPAPLQRLCCEL*LHLLII Trigger: AATTATGAGGAGATGCAGGCAAAGCTCGCAGCACAG...GCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | CAGCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTTAGGAGTCTCACTCTaGAGTTCTGGAAAGTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: QLPTPAQKTLPRPAPLQRLGVSL*SSGKFS Trigger: TGAGAACTTTCCAGAACTGCAGAGTGAGACTCCTAA...GCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR TCA 90 bp | AGCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTTCTACACTAACAGGATaGAACAGTTCACTTCTCCCT | + |
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Preference number: 4 (lower is better) Translates to: SSPHQLRRPSPAQHLFSASTLTG*NSSLLP Trigger: AGGGAGAAGTGAACTGTTTCATCCTGTTAGTGTAGA...AGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR GCA 90 bp | CCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCCTTGTTAGGAGTCTCACTCTaGAGTTCTGGAAAGTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: PTPAQKTLPRPAPLQRSLLGVSL*SSGKFS Trigger: TGAGAACTTTCCAGAACTGCAGAGTGAGACTCCTAA...CAAGGAGCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | CCCTCTGACAATGACTTGGTGAGTCACTCTGTTGTGTGGGTAACACATTGGTCTAGCTCCGCCGAACTCTaGCGCCCCAAGTCCTCGGGA | + |
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Preference number: 4 (lower is better) Translates to: PSDNDLVSHSVVWVTHWSSSAEL*RPKSSG Trigger: TCCCGAGGACTTGGGGCGGCAGAGTTCGGCGGAGCT...AGACCAATGTGTTACCCACACAACAGAGTGACTCACCAAGTCATTGTCAGAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169804.2 |
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| CDS-3UTR GCA 90 bp | GAGTGTCTTCCACAGTGTTTCACATCCAGCATCTCAGGAACATGTCCATGCAGGTATGGAAAGCAGCTGTaGAGGCAGGTGGTGGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: ECLPQCFTSSISGTCPCRYGKQL*RQVVER Trigger: CCGCTCCACCACCTGCCTGCACAGCTGCTTTCCATA...CCTGCATGGACATGTTCCTGAGATGCTGGATGTGAAACACTGTGGAAGACACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | GACAGCAGTCACCCCAGAGAGACAGGATCAGCCAATGCACTTGCTGTAACATTTGGCCAGTTTCTGTGCTaGGAGCTTTGCCTGCATCTC | + |
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Preference number: 4 (lower is better) Translates to: DSSHPRETGSANALAVTFGQFLC*ELCLHL Trigger: GAGATGCAGGCAAAGCTCGCAGCACAGAAACTGGCC...AAATGTTACAGCAAGTGCATTGGCTGATCCTGTCTCTCTGGGGTGACTGCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR TCA 90 bp | GAGTGTCTTCCACAGTGTTTCACATCCAGCATCTCAGGAACATGTCCATGCAGGGCTGGTGTTTTCTTCTaGGGGTTCACTCTGGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: ECLPQCFTSSISGTCPCRAGVFF*GFTLVC Trigger: GCAGACCAGAGTGAACCCTCAGAAGAAAACACCAGC...CCTGCATGGACATGTTCCTGAGATGCTGGATGTGAAACACTGTGGAAGACACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | CACAATACGGCCAAATACAAGGTTCACATATTAAACTGTGCAAGCTGTGAAGAGTGTGCAGGCAGGTGGTaGAGCGGAAGGAGGCGCGCT | + |
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Preference number: 4 (lower is better) Translates to: HNTAKYKVHILNCASCEECAGRW*SGRRRA Trigger: AGCGCGCCTCCTTCCGCTCCACCACCTGCCTGCACA...CTCTTCACAGCTTGCACAGTTTAATATGTGAACCTTGTATTTGGCCGTATTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR TCA 90 bp | CAGGCACGTGGACCATTCTTTACACTTCATTTCTTGAGCGAGGGAACCAGGCCTGAGATCTCTTCCTCTTaGCTTGAAACAGAGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QARGPFFTLHFLSEGTRPEISSS*LETECW Trigger: CCAGCACTCTGTTTCAAGTCAAGAGGAAGAGATCTC...AGGCCTGGTTCCCTCGCTCAAGAAATGAAGTGTAAAGAATGGTCCACGTGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | GAGTGTCTTCCACAGTGTTTCACATCCAGCATCTCAGGAACATGTCCATGCAGGGTGATATCATCAAGATaGTGCCTAGCCCTTCGTCGC | + |
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Preference number: 4 (lower is better) Translates to: ECLPQCFTSSISGTCPCRVISSR*CLALRR Trigger: GCGACGAAGGGCTAGGCAGCATCTTGATGATATCAC...CCTGCATGGACATGTTCCTGAGATGCTGGATGTGAAACACTGTGGAAGACACTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | AATGCACTTGCTGTAACATTTCTGAGTGTCTTCCACAGTGTTTCACATCCAGCACACTCATCCGAGGACTaGGCATCAGCTTCGTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: NALAVTFLSVFHSVSHPAHSSED*ASASSL Trigger: GAGGGACGAAGCTGATGCCCAGTCCTCGGATGAGTG...TGCTGGATGTGAAACACTGTGGAAGACACTCAGAAATGTTACAGCAAGTGCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | CAATGCACTTGCTGTAACATTTCTGAGTGTCTTCCACAGTGTTTCACATCCAGCCCAGCGACTCTTCTATaGAAAGCAGCTGTGCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: QCTCCNISECLPQCFTSSPATLL*KAAVQA Trigger: TGCCTGCACAGCTGCTTTCCATAGAAGAGTCGCTGG...GCTGGATGTGAAACACTGTGGAAGACACTCAGAAATGTTACAGCAAGTGCATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR TCA 90 bp | CAGGAACATGTCCATGCAGGCACGTGGACCATTCTTTACACTTCATTTCTTGAGGAGATCTCTTCCTCTTaGCTTGAAACAGAGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QEHVHAGTWTILYTSFLEEISSS*LETECW Trigger: CCAGCACTCTGTTTCAAGTCAAGAGGAAGAGATCTC...CTCAAGAAATGAAGTGTAAAGAATGGTCCACGTGCCTGCATGGACATGTTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | TGTGCAAGCTGTGAAGAGCGTCTTCTGAAAGACAAACTGGGTTCTTACTTTGTACGGAAGGAGGCGCGCTaGTGTGATATCATCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: CASCEERLLKDKLGSYFVRKEAR*CDIIKM Trigger: CATCTTGATGATATCACAGCAGCGCGCCTCCTTCCG...TACAAAGTAAGAACCCAGTTTGTCTTTCAGAAGACGCTCTTCACAGCTTGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | TGTGCAAGCTGTGAAGAGCGTCTTCTGAAAGACAAACTGGGTTCTTACTTTGTATCGGATGTGGGCAGCTaGGCTGCTGTTTACTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: CASCEERLLKDKLGSYFVSDVGS*AAVYCV Trigger: TACACAGTAAACAGCAGCCCAGCTGCCCACATCCGA...TACAAAGTAAGAACCCAGTTTGTCTTTCAGAAGACGCTCTTCACAGCTTGCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | TGTACTCACAAGTCAACTGTAACTCTTAGAAAAACATCGGTTTCCTTACCAAACTATGGAAAGCAGCTGTaGAGGCAGGTGGTGGAGCGG | + |
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Preference number: 4 (lower is better) Translates to: CTHKSTVTLRKTSVSLPNYGKQL*RQVVER Trigger: CCGCTCCACCACCTGCCTGCACAGCTGCTTTCCATA...GTTTGGTAAGGAAACCGATGTTTTTCTAAGAGTTACAGTTGACTTGTGAGTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | CACATCGCCATGAGCTCGGGGAGCTGCTCTGATTGGTATTTTATTTCTTCTTTACGGTGTCAGCTCTTGTaGTTGCTTTTTGCCTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: HIAMSSGSCSDWYFISSLRCQLL*LLFALA Trigger: AGCTAAGGCAAAAAGCAACCACAAGAGCTGACACCG...TAAAGAAGAAATAAAATACCAATCAGAGCAGCTCCCCGAGCTCATGGCGATGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR CCA 90 bp | CACAATACGGCCAAATACAAGGTTCACATATTAAACTGTGCAAGCTGTGAAGAGCCAGCGACTCTTCTATaGAAAGCAGCTGTGCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: HNTAKYKVHILNCASCEEPATLL*KAAVQA Trigger: TGCCTGCACAGCTGCTTTCCATAGAAGAGTCGCTGG...CTCTTCACAGCTTGCACAGTTTAATATGTGAACCTTGTATTTGGCCGTATTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | TGTACTCACAAGTCAACTGTAACTCTTAGAAAAACATCGGTTTCCTTACCAAACCACTCATCCGAGGACTaGGCATCAGCTTCGTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: CTHKSTVTLRKTSVSLPNHSSED*ASASSL Trigger: GAGGGACGAAGCTGATGCCCAGTCCTCGGATGAGTG...GTTTGGTAAGGAAACCGATGTTTTTCTAAGAGTTACAGTTGACTTGTGAGTACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | TGTACTCACAAGTCAACTGTAACTCTTAGAAAAACATCGGTTTCCTTACCAAACTCGGATGTGGGCAGCTaGGCTGCTGTTTACTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: CTHKSTVTLRKTSVSLPNSDVGS*AAVYCV Trigger: TACACAGTAAACAGCAGCCCAGCTGCCCACATCCGA...GTTTGGTAAGGAAACCGATGTTTTTCTAAGAGTTACAGTTGACTTGTGAGTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR GCA 90 bp | TGTACTCACAAGTCAACTGTAACTCTTAGAAAAACATCGGTTTCCTTACCAAACCTGTGCTGCGAGCTTTaGCTGCATCTCCTCATAATT | + |
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Preference number: 4 (lower is better) Translates to: CTHKSTVTLRKTSVSLPNLCCEL*LHLLII Trigger: AATTATGAGGAGATGCAGGCAAAGCTCGCAGCACAG...GTTTGGTAAGGAAACCGATGTTTTTCTAAGAGTTACAGTTGACTTGTGAGTACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CCA 90 bp | CTATCTGATAAGAGTACAGATAAGGAAAATGCAGCTAAAGAAAACGTGTGCTCTTGGCAGCTTTCAGTTTaGCAACTGTGTCTGAGATCT | + |
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Preference number: 4 (lower is better) Translates to: LSDKSTDKENAAKENVCSWQLSV*QLCLRS Trigger: AGATCTCAGACACAGTTGCCAAACTGAAAGCTGCCA...AGAGCACACGTTTTCTTTAGCTGCATTTTCCTTATCTGTACTCTTATCAGATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR CAA 90 bp | CAGCTCCCCACACCAGCTCAGAAGACCCTCCCCCGCCCAGCACCTCTTCAGCGCTCTCTTCCTCTTGACTaGAAACAGAGTGCTGGGGGA | + |
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Preference number: 5 (lower is better) Translates to: QLPTPAQKTLPRPAPLQRSLPLD*KQSAGG Trigger: TCCCCCAGCACTCTGTTTCAAGTCAAGAGGAAGAGA...GCGCTGAAGAGGTGCTGGGCGGGGGAGGGTCTTCTGAGCTGGTGTGGGGAGCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000034720.12 ENSMUST00000163972.2 |
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| CDS-3UTR CAA 90 bp | CAGGAACATGTCCATGCAGGCACGTGGACCATTCTTTACACTTCATTTCTTGAGCAAATGAATTTTTCGTaGCGCAAAAGTCTCTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: QEHVHAGTWTILYTSFLEQMNFS*RKSLSW Trigger: CCAGGAGAGACTTTTGCGCAACGAAAAATTCATTTG...CTCAAGAAATGAAGTGTAAAGAATGGTCCACGTGCCTGCATGGACATGTTCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR CAA 90 bp | AATGCACTTGCTGTAACATTTCTGAGTGTCTTCCACAGTGTTTCACATCCAGCAATGGCAGCTTTCAGTTaGGCAACTGTGTCTGAGATC | + |
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Preference number: 5 (lower is better) Translates to: NALAVTFLSVFHSVSHPAMAAFS*ATVSEI Trigger: GATCTCAGACACAGTTGCCAAACTGAAAGCTGCCAT...TGCTGGATGTGAAACACTGTGGAAGACACTCAGAAATGTTACAGCAAGTGCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR CAA 90 bp | CACATCGCCATGAGCTCGGGGAGCTGCTCTGATTGGTATTTTATTTCTTCTTTATGTCAGCTCTTGTGGTaGCTTTTTGCCTTAGCTTAC | + |
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Preference number: 5 (lower is better) Translates to: HIAMSSGSCSDWYFISSLCQLLW*LFALAY Trigger: GTAAGCTAAGGCAAAAAGCAACCACAAGAGCTGACA...TAAAGAAGAAATAAAATACCAATCAGAGCAGCTCCCCGAGCTCATGGCGATGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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| CDS-3UTR CAA 90 bp | TGTGCAAGCTGTGAAGAGCGTCTTCTGAAAGACAAACTGGGTTCTTACTTTGTACATCGGTGTCAGCTCTaGTGGTTGCTTTTTGCCTTA | + |
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Preference number: 5 (lower is better) Translates to: CASCEERLLKDKLGSYFVHRCQL*WLLFAL Trigger: TAAGGCAAAAAGCAACCACAAGAGCTGACACCGATG...TACAAAGTAAGAACCCAGTTTGTCTTTCAGAAGACGCTCTTCACAGCTTGCACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034720.12 |
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