Pregenerated sensors for POLR2L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038489Ensembl transcript IDs: ENSMUST00000043870.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACGGAAGCAGGGTACTCCTCCACAGGACGAGACTCCCAGTCAGATaGAGGGGAAGGAGACCAGCCCTAGGGGAAAGACTGGAGGCAGGC | + |
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Preference number: 1 (lower is better) Translates to: NGSRVLLHRTRLPVR*RGRRPALGERLEAG Trigger: GCCTGCCTCCAGTCTTTCCCCTAGGGCTGGTCTCCTTCCCCTTCATCTGACTGGGAGTCTCGTCCTGTGGAGGAGTACCCTGCTTCCGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR GCA 90 bp | CTTCTTAGGACTACATGCTGTGGGGATTGGGTCAAGGGGCAGGGCTaGCTAGCTGTCGGGCCTGGGAAGATTCTGGAAACAAGATCCTCA | + |
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Preference number: 1 (lower is better) Translates to: LLRTTCCGDWVKGQG*LAVGPGKILETRSS Trigger: TGAGGATCTTGTTTCCAGAATCTTCCCAGGCCCGACAGCTAGGCAGCCCTGCCCCTTGACCCAATCCCCACAGCATGTAGTCCTAAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 90 bp | CCTCCAAGCACGCTCAGCATTCCAAAGGAATATTGTCACCAGGCTTaGGCCCATCCATACCTGTGGATGGTGTGGTGCCCACATCCATTA | + |
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Preference number: 1 (lower is better) Translates to: PPSTLSIPKEYCHQA*AHPYLWMVWCPHPL Trigger: TAATGGATGTGGGCACCACACCATCCACAGGTATGGATGGGCCCAAGCCTGGTGACAATATTCCTTTGGAATGCTGAGCGTGCTTGGAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 90 bp | GAAGAGGATCTTGTTGCGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTTGGAAGAGCAGTTGGGTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: EEDLVADGCEPPCGC*DLNSGPLEEQLGAL Trigger: AAGAGCACCCAACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGCAACAAGATCCTCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR TCA 90 bp | TTCCAGGATAGTCAAGGCCAAACAGAGAAACCCTGTCTTGGAAAATaGAAGGTAAATAAATCTGGGTTTGATTCCCAATACCTGATGGCA | + |
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Preference number: 1 (lower is better) Translates to: FQDSQGQTEKPCLGK*KVNKSGFDSQYLMA Trigger: TGCCATCAGGTATTGGGAATCAAACCCAGATTTATTTACCTTTCATTTTCCAAGACAGGGTTTCTCTGTTTGGCCTTGACTATCCTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CCA 90 bp | GCCTCAGAGACAGCACAGACATGGACATGGAGCACCTTGGAAGTTAGACCTGTTACGACAGGCTGCCCGTaGCCAGCAGGAGACAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: ASETAQTWTWSTLEVRPVTTGCP*PAGDRG Trigger: TCCTCTGTCTCCTGCTGGCCACGGGCAGCCTGTCGT...AACAGGTCTAACTTCCAAGGTGCTCCATGTCCATGTCTGTGCTGTCTCTGAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR TCA 90 bp | GAGGCAGAGACTGATCTCTTTAGTTCAAGGCCAGCCTGGTCTGCAGAGTTGAATAGACTCCCAGTCAGATaGAGGGGAAGGAGACCAGCC | + |
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Preference number: 2 (lower is better) Translates to: EAETDLFSSRPAWSAELNRLPVR*RGRRPA Trigger: GGCTGGTCTCCTTCCCCTTCATCTGACTGGGAGTCT...ATTCAACTCTGCAGACCAGGCTGGCCTTGAACTAAAGAGATCAGTCTCTGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CCA 90 bp | GACACTCCAGAAGAGGATCTTGTTGCGGATGGTTGTGAGCCACCATGTGGTTGCAGTTCAAGGCCAGCCTaGTCTGCAGAGTTGAATTCC | + |
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Preference number: 2 (lower is better) Translates to: DTPEEDLVADGCEPPCGCSSRPA*SAELNS Trigger: GGAATTCAACTCTGCAGACCAGGCTGGCCTTGAACT...GCAACCACATGGTGGCTCACAACCATCCGCAACAAGATCCTCTTCTGGAGTGTC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CCA 90 bp | GAACTCTGGACCTTTGGAAGAGCAGTTGGGTGCTCTTACCCACTGAGCCATCTCGGCCTGGGAAGATTCTaGAAACAAGATCCTCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: ELWTFGRAVGCSYPLSHLGLGRF*KQDPQA Trigger: TGCCTGAGGATCTTGTTTCCAGAATCTTCCCAGGCC...GAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCAAAGGTCCAGAGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CCA 90 bp | CTTATAAGCAGACCAAATACCCAAATGCATAATAACCCTAGCACAAGGATTGGGGAGACAGCACAGACATaGACATGGAGCACCTTGGAA | + |
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Preference number: 2 (lower is better) Translates to: LISRPNTQMHNNPSTRIGETAQT*TWSTLE Trigger: TTCCAAGGTGCTCCATGTCCATGTCTGTGCTGTCTC...CCCAATCCTTGTGCTAGGGTTATTATGCATTTGGGTATTTGGTCTGCTTATAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CCA 90 bp | TTTGATTCCCAATACCTGATGGCAGCTTATACATTCTATAACTTTACTCTCAGGGCCCATCCATACCTGTaGATGGTGTGGTGCCCACAT | + |
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Preference number: 2 (lower is better) Translates to: FDSQYLMAAYTFYNFTLRAHPYL*MVWCPH Trigger: ATGTGGGCACCACACCATCCACAGGTATGGATGGGC...CCTGAGAGTAAAGTTATAGAATGTATAAGCTGCCATCAGGTATTGGGAATCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR TCA 72 bp | AGGGTACTCCTCCACAGGACGAGACTCCCAGTCAGATaGAGGGGAAGGAGACCAGCCCTAGGGGAAAGACTG | + |
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Preference number: 3 (lower is better) Translates to: RVLLHRTRLPVR*RGRRPALGERL Trigger: CAGTCTTTCCCCTAGGGCTGGTCTCCTTCCCCTTCATCTGACTGGGAGTCTCGTCCTGTGGAGGAGTACCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR GCA 72 bp | ACTACATGCTGTGGGGATTGGGTCAAGGGGCAGGGCTaGCTAGCTGTCGGGCCTGGGAAGATTCTGGAAACA | + |
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Preference number: 3 (lower is better) Translates to: TTCCGDWVKGQG*LAVGPGKILET Trigger: TGTTTCCAGAATCTTCCCAGGCCCGACAGCTAGGCAGCCCTGCCCCTTGACCCAATCCCCACAGCATGTAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR TCA 72 bp | TGGATGGTGTGGTGCCCACATCCATTATGCCCATCCTaGACACAGGCAGGAAGCGGAGAGGCCCTAAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: WMVWCPHPLCPS*TQAGSGEALKQ Trigger: TTGCTTTAGGGCCTCTCCGCTTCCTGCCTGTGTTCAGGATGGGCATAATGGATGTGGGCACCACACCATCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CAA 90 bp | GACACTCCAGAAGAGGATCTTGTTGCGGATGGTTGTGAGCCACCATGTGGTTGCAGTATCTGGGTTTGGTaGGGTGGCACAAGCCGTCCT | + |
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Preference number: 3 (lower is better) Translates to: DTPEEDLVADGCEPPCGCSIWVW*GGTSRP Trigger: AGGACGGCTTGTGCCACCCAACCAAACCCAGATACT...GCAACCACATGGTGGCTCACAACCATCCGCAACAAGATCCTCTTCTGGAGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR TCA 72 bp | GCAATGTGGTACAAGACTACTGTAGGGCTACCTCGTTaGTCAAAGTGGTCAAGGCCCCGGGGAACGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: AMWYKTTVGLPR*SKWSRPRGTEA Trigger: TGCTTCCGTTCCCCGGGGCCTTGACCACTTTGATCAACGAGGTAGCCCTACAGTAGTCTTGTACCACATTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 72 bp | GGCCAGGTAGCCTCAGAGACAGCACAGACATGGACATaGAGCACCTTGGAAGTTAGACCTGTTGGTGGTTCT | + |
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Preference number: 3 (lower is better) Translates to: GQVASETAQTWT*STLEVRPVGGS Trigger: AGAACCACCAACAGGTCTAACTTCCAAGGTGCTCCATGTCCATGTCTGTGCTGTCTCTGAGGCTACCTGGCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 72 bp | ACGCTCAGCATTCCAAAGGAATATTGTCACCAGGCTTaGGCCCATCCATACCTGTGGATGGTGTGGTGCCCA | + |
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Preference number: 3 (lower is better) Translates to: TLSIPKEYCHQA*AHPYLWMVWCP Trigger: TGGGCACCACACCATCCACAGGTATGGATGGGCCCAAGCCTGGTGACAATATTCCTTTGGAATGCTGAGCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 72 bp | CTGTGGCCTTGGGCGTACTCCTACAGTATCTGGGTTTaGTTGGGTGGCACAAGCCGTCCTTTAAACTCAACA | + |
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Preference number: 3 (lower is better) Translates to: LWPWAYSYSIWV*LGGTSRPLNST Trigger: TGTTGAGTTTAAAGGACGGCTTGTGCCACCCAACCAAACCCAGATACTGTAGGAGTACGCCCAAGGCCACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR-3UTR CAA 90 bp | GAACTCTGGACCTTTGGAAGAGCAGTTGGGTGCTCTTACCCACTGAGCCATCTCGCCTGGTCTGCAGAGTaGAATTCCAGGATAGTCAAG | + |
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Preference number: 3 (lower is better) Translates to: ELWTFGRAVGCSYPLSHLAWSAE*NSRIVK Trigger: CTTGACTATCCTGGAATTCAACTCTGCAGACCAGGC...GAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCAAAGGTCCAGAGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR GCA 72 bp | GATCTTGTTGCGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCTGGACCTTTGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLVADGCEPPCG*WDLNSGPLEEQ Trigger: CTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGCAACAAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 72 bp | CTTGTTGCGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTTGGAAGAGCAGTTG | + |
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Preference number: 3 (lower is better) Translates to: LVADGCEPPCGC*DLNSGPLEEQL Trigger: CAACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGCAACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CCA 72 bp | CCTCAGAGACAGCACAGACATGGACATGGAGCACCTTaGAAGTTAGACCTGTTGGTGGTTCTGCAAACATCT | + |
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Preference number: 3 (lower is better) Translates to: PQRQHRHGHGAP*KLDLLVVLQTS Trigger: AGATGTTTGCAGAACCACCAACAGGTCTAACTTCCAAGGTGCTCCATGTCCATGTCTGTGCTGTCTCTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| CDS-3UTR GCA 90 bp | GCCTCAGAGACAGCACAGACATGGACATGGAGCACCTTGGAAGTTAGACCTGTTCGTGTGCTAGCAGCATaGGGCGGCAGCAGTAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: ASETAQTWTWSTLEVRPVRVLAA*GGSSSA Trigger: AGCGCTACTGCTGCCGCCGCATGCTGCTAGCACACG...AACAGGTCTAACTTCCAAGGTGCTCCATGTCCATGTCTGTGCTGTCTCTGAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CAA 72 bp | CACGCTCAGCATTCCAAAGGAATATTGTCACCAGGCTaGGGCCCATCCATACCTGTGGATGGTGTGGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: HAQHSKGILSPG*GPSIPVDGVVP Trigger: GGGCACCACACCATCCACAGGTATGGATGGGCCCAAGCCTGGTGACAATATTCCTTTGGAATGCTGAGCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| CDS-3UTR GCA 90 bp | CCTCCAAGCACGCTCAGCATTCCAAAGGAATATTGTCACCAGGCTTGGGCCCATAGGCTTCCCATTTGTTaGCGACGATCTTCCCGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PPSTLSIPKEYCHQAWAHRLPIC*RRSSRR Trigger: CCTGCGGGAAGATCGTCGGCAACAAATGGGAAGCCT...ATGGGCCCAAGCCTGGTGACAATATTCCTTTGGAATGCTGAGCGTGCTTGGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CAA 72 bp | GCTTTAGGACCCAAGAAATTCGTGAGGCCTGTGGCCTaGGGCGTACTCCTACAGTATCTGGGTTTGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: ALGPKKFVRPVA*GVLLQYLGLVG Trigger: CCCAACCAAACCCAGATACTGTAGGAGTACGCCCAAGGCCACAGGCCTCACGAATTTCTTGGGTCCTAAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CAA 72 bp | TGGCCTTGGGCGTACTCCTACAGTATCTGGGTTTGGTaGGGTGGCACAAGCCGTCCTTTAAACTCAACACTC | + |
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Preference number: 4 (lower is better) Translates to: WPWAYSYSIWVW*GGTSRPLNSTL Trigger: GAGTGTTGAGTTTAAAGGACGGCTTGTGCCACCCAACCAAACCCAGATACTGTAGGAGTACGCCCAAGGCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CAA 72 bp | TGTTGCTGTCTTCAGACACTCCAGAAGAGGATCTTGTaGCGGATGGTTGTGAGCCACCATGTGGTTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: CCCLQTLQKRIL*RMVVSHHVVAG Trigger: CCCAGCAACCACATGGTGGCTCACAACCATCCGCAACAAGATCCTCTTCTGGAGTGTCTGAAGACAGCAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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| 3UTR CAA 72 bp | GCCTCAGAGACAGCACAGACATGGACATGGAGCACCTaGGAAGTTAGACCTGTTGGTGGTTCTGCAAACATC | + |
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Preference number: 4 (lower is better) Translates to: ASETAQTWTWST*EVRPVGGSANI Trigger: GATGTTTGCAGAACCACCAACAGGTCTAACTTCCAAGGTGCTCCATGTCCATGTCTGTGCTGTCTCTGAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043870.9 |
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