RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POLR2J (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039771

Ensembl transcript IDs: ENSMUST00000041366.14, ENSMUST00000111127.8, ENSMUST00000111129.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCAAAGGCTCCAGGTACCTCAGCAGGCTTCCCCCACCCTGCCCTGTaGCATCTGCTTGCTAGGGAGCCAACTGGGACATGCCTGCCCAGT +
Preference number: 1 (lower is better)
Translates to: PKAPGTSAGFPHPAL*HLLAREPTGTCLPS
Trigger: ACTGGGCAGGCATGTCCCAGTTGGCTCCCTAGCAAGCAGATGCCACAGGGCAGGGTGGGGGAAGCCTGCTGAGGTACCTGGAGCCTTTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR CCA 90 bp CTGCAGTCCTTGCAAATGCAACACTCCAGAGGACACGGCAGGGGGTaGACCAGTCTCCAAAGGCTCCAGGTACCTCAGCAGGCTTCCCCC +
Preference number: 1 (lower is better)
Translates to: LQSLQMQHSRGHGRG*TSLQRLQVPQQASP
Trigger: GGGGGAAGCCTGCTGAGGTACCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 90 bp CACCCTGCCCTGTGGCATCTGCTTGCTAGGGAGCCAACTGGGACATaGCTGCCCAGTGGGGTGAAACCTCAAAGGAGGCTTACCTTACAC +
Preference number: 1 (lower is better)
Translates to: HPALWHLLAREPTGT*LPSGVKPQRRLTLH
Trigger: GTGTAAGGTAAGCCTCCTTTGAGGTTTCACCCCACTGGGCAGGCATGTCCCAGTTGGCTCCCTAGCAAGCAGATGCCACAGGGCAGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 90 bp CTCCAGCATATTGGTGCAGCACCAAGACACTGGGGCTGCAGTCCTTaGAAATGCAACACTCCAGAGGACACGGCAGGGGGTGGACCAGTC +
Preference number: 1 (lower is better)
Translates to: LQHIGAAPRHWGCSP*KCNTPEDTAGGGPV
Trigger: GACTGGTCCACCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAGCCCCAGTGTCTTGGTGCTGCACCAATATGCTGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR CCA 90 bp AGGCTTACCTTACACGGAAACCCCAGACCAAGAACTGTGCTACCCTaGGAAGAACGGCTAGACAAGAGCCTGGAGTCTCTGGGGCCTTAC +
Preference number: 1 (lower is better)
Translates to: RLTLHGNPRPRTVLP*EERLDKSLESLGPY
Trigger: GTAAGGCCCCAGAGACTCCAGGCTCTTGTCTAGCCGTTCTTCCCAGGGTAGCACAGTTCTTGGTCTGGGGTTTCCGTGTAAGGTAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR-3UTR GCA 90 bp ACACTCCAGAGGACACGGCAGGGGGTGGACCAGTCTCCAAAGGCTCCAGGTACCAGGCTTCCCCCACCCTaGCCTGTGGCATCTGCTTGC +
Preference number: 2 (lower is better)
Translates to: TLQRTRQGVDQSPKAPGTRLPPP*PVASAC
Trigger: GCAAGCAGATGCCACAGGGCAGGGTGGGGGAAGCCT...GGTACCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGTCCTCTGGAGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR-3UTR GCA 90 bp AGGACACGGCAGGGGGTGGACCAGTCTCCAAAGGCTCCAGGTACCTCAGCAGGCGAGCCAACTGGGACATaGCTGCCCAGTGGGGTGAAA +
Preference number: 2 (lower is better)
Translates to: RTRQGVDQSPKAPGTSAGEPTGT*LPSGVK
Trigger: TTTCACCCCACTGGGCAGGCATGTCCCAGTTGGCTC...GCCTGCTGAGGTACCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGTCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR-3UTR GCA 90 bp GGGGCTGCAGTCCTTGCAAATGCAACACTCCAGAGGACACGGCAGGGGGTGGACCTGCCCTGTGGCATCTaGTTGCTAGGGAGCCAACTG +
Preference number: 2 (lower is better)
Translates to: GAAVLANATLQRTRQGVDLPCGI*LLGSQL
Trigger: CAGTTGGCTCCCTAGCAAGCAGATGCCACAGGGCAG...GTCCACCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAGCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR-3UTR CCA 90 bp AGAGGACACGGCAGGGGGTGGACCAGTCTCCAAAGGCTCCAGGTACCTCAGCAGAGAACTGTGCTACCCTaGGAAGAACGGCTAGACAAG +
Preference number: 2 (lower is better)
Translates to: RGHGRGWTSLQRLQVPQQRTVLP*EERLDK
Trigger: CTTGTCTAGCCGTTCTTCCCAGGGTAGCACAGTTCT...CTGCTGAGGTACCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGTCCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR-3UTR GCA 90 bp TGCAACACTCCAGAGGACACGGCAGGGGGTGGACCAGTCTCCAAAGGCTCCAGGGTGCTAGGTAAACACTaGACTATCAAGCTACACCCA +
Preference number: 2 (lower is better)
Translates to: CNTPEDTAGGGPVSKGSRVLGKH*TIKLHP
Trigger: TGGGTGTAGCTTGATAGTGCAGTGTTTACCTAGCAC...CCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGTCCTCTGGAGTGTTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 72 bp CCTCAGCAGGCTTCCCCCACCCTGCCCTGTGGCATCTaGTTGCTAGGGAGCCAACTGGGACATGCCTGCCCA +
Preference number: 3 (lower is better)
Translates to: PQQASPTLPCGI*LLGSQLGHACP
Trigger: TGGGCAGGCATGTCCCAGTTGGCTCCCTAGCAAGCAGATGCCACAGGGCAGGGTGGGGGAAGCCTGCTGAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR CCA 72 bp CCAGGTACCTCAGCAGGCTTCCCCCACCCTGCCCTGTaGCATCTGCTTGCTAGGGAGCCAACTGGGACATGC +
Preference number: 3 (lower is better)
Translates to: PGTSAGFPHPAL*HLLAREPTGTC
Trigger: GCATGTCCCAGTTGGCTCCCTAGCAAGCAGATGCCACAGGGCAGGGTGGGGGAAGCCTGCTGAGGTACCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR-3UTR CAA 90 bp CACTGGGGCTGCAGTCCTTGCAAATGCAACACTCCAGAGGACACGGCAGGGGGTCCCTGTGGCATCTGCTaGCTAGGGAGCCAACTGGGA +
Preference number: 3 (lower is better)
Translates to: HWGCSPCKCNTPEDTAGGPCGIC*LGSQLG
Trigger: TCCCAGTTGGCTCCCTAGCAAGCAGATGCCACAGGG...ACCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAGCCCCAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 72 bp GCAGCACCAAGACACTGGGGCTGCAGTCCTTGCAAATaGAACACTCCAGAGGACACGGCAGGGGGTGGACCA +
Preference number: 3 (lower is better)
Translates to: AAPRHWGCSPCK*NTPEDTAGGGP
Trigger: TGGTCCACCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAGCCCCAGTGTCTTGGTGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 72 bp CTGTGGCATCTGCTTGCTAGGGAGCCAACTGGGACATaGCTGCCCAGTGGGGTGAAACCTCAAAGGAGGCTT +
Preference number: 3 (lower is better)
Translates to: LWHLLAREPTGT*LPSGVKPQRRL
Trigger: AAGCCTCCTTTGAGGTTTCACCCCACTGGGCAGGCATGTCCCAGTTGGCTCCCTAGCAAGCAGATGCCACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR CCA 72 bp TTGCAAATGCAACACTCCAGAGGACACGGCAGGGGGTaGACCAGTCTCCAAAGGCTCCAGGTACCTCAGCAG +
Preference number: 3 (lower is better)
Translates to: LQMQHSRGHGRG*TSLQRLQVPQQ
Trigger: CTGCTGAGGTACCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR TCA 72 bp CTAGGGAGCCAACTGGGACATGCCTGCCCAGTGGGGTaGAACCTCAAAGGAGGCTTACCTTACACGGAAACC +
Preference number: 3 (lower is better)
Translates to: LGSQLGHACPVG*NLKGGLPYTET
Trigger: GGTTTCCGTGTAAGGTAAGCCTCCTTTGAGGTTTCACCCCACTGGGCAGGCATGTCCCAGTTGGCTCCCTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 72 bp AACAACAGTCTATGTACAGAATGGGGCAGAGCCCCGTaGCCAGCTAGAGAGCTGAGAGTGGCTGTCGCCATG +
Preference number: 3 (lower is better)
Translates to: NNSLCTEWGRAP*PARELRVAVAM
Trigger: CATGGCGACAGCCACTCTCAGCTCTCTAGCTGGGCACGGGGCTCTGCCCCATTCTGTACATAGACTGTTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041366.14
ENSMUST00000111129.2
3UTR GCA 72 bp CTCCAGCATATTGGTGCAGCACCAAGACACTGGGGCTaGAGTCCTTGCAAATGCAACACTCCAGAGGACACG +
Preference number: 3 (lower is better)
Translates to: LQHIGAAPRHWG*SPCKCNTPEDT
Trigger: CGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAGCCCCAGTGTCTTGGTGCTGCACCAATATGCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR GCA 72 bp GCCAGTGGCAACGGTGGTTTTGTGCTAGGTAAACACTaGACTATCAAGCTACACCCAACCCAGCCCCTCACT +
Preference number: 3 (lower is better)
Translates to: ASGNGGFVLGKH*TIKLHPTQPLT
Trigger: AGTGAGGGGCTGGGTTGGGTGTAGCTTGATAGTGCAGTGTTTACCTAGCACAAAACCACCGTTGCCACTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR CCA 72 bp TTACACGGAAACCCCAGACCAAGAACTGTGCTACCCTaGGAAGAACGGCTAGACAAGAGCCTGGAGTCTCTG +
Preference number: 3 (lower is better)
Translates to: LHGNPRPRTVLP*EERLDKSLESL
Trigger: CAGAGACTCCAGGCTCTTGTCTAGCCGTTCTTCCCAGGGTAGCACAGTTCTTGGTCTGGGGTTTCCGTGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
3UTR CAA 72 bp TATTGGTGCAGCACCAAGACACTGGGGCTGCAGTCCTaGCAAATGCAACACTCCAGAGGACACGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: YWCSTKTLGLQS*QMQHSRGHGRG
Trigger: CCCCCTGCCGTGTCCTCTGGAGTGTTGCATTTGCAAGGACTGCAGCCCCAGTGTCTTGGTGCTGCACCAATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
CDS-3UTR CAA 90 bp ACAGAATGGGGCAGAGCCCCGTGCCCAGCTAGAGAGCTGAGAGTGGCTGTCGCCAGGTCTGTGATGGCGTaGGTGAAAGCCTCCTGGGGA +
Preference number: 5 (lower is better)
Translates to: TEWGRAPCPARELRVAVARSVMA*VKASWG
Trigger: TCCCCAGGAGGCTTTCACCAACGCCATCACAGACCT...GGCGACAGCCACTCTCAGCTCTCTAGCTGGGCACGGGGCTCTGCCCCATTCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041366.14
ENSMUST00000111129.2
CDS-3UTR CAA 90 bp ACACGGCAGGGGGTGGACCAGTCTCCAAAGGCTCCAGGTACCTCAGCAGGCTTCAGGTCTGTGATGGCGTaGGTGAAAGCCTCCTGGGGA +
Preference number: 5 (lower is better)
Translates to: TRQGVDQSPKAPGTSAGFRSVMA*VKASWG
Trigger: TCCCCAGGAGGCTTTCACCAACGCCATCACAGACCT...GAAGCCTGCTGAGGTACCTGGAGCCTTTGGAGACTGGTCCACCCCCTGCCGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111127.8
CDS-3UTR CAA 90 bp ACAGAATGGGGCAGAGCCCCGTGCCCAGCTAGAGAGCTGAGAGTGGCTGTCGCCTCAATTCCTTCTTGCTaGTCCTTGATGGCCACCCGG +
Preference number: 5 (lower is better)
Translates to: TEWGRAPCPARELRVAVASIPSC*SLMATR
Trigger: CCGGGTGGCCATCAAGGACAAGCAAGAAGGAATTGA...GGCGACAGCCACTCTCAGCTCTCTAGCTGGGCACGGGGCTCTGCCCCATTCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041366.14
ENSMUST00000111129.2
CDS-3UTR CAA 90 bp AGTCTATGTACAGAATGGGGCAGAGCCCCGTGCCCAGCTAGAGAGCTGAGAGTGAGGTCTGTGATGGCGTaGGTGAAAGCCTCCTGGGGA +
Preference number: 5 (lower is better)
Translates to: SLCTEWGRAPCPARELRVRSVMA*VKASWG
Trigger: TCCCCAGGAGGCTTTCACCAACGCCATCACAGACCT...CACTCTCAGCTCTCTAGCTGGGCACGGGGCTCTGCCCCATTCTGTACATAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041366.14
ENSMUST00000111129.2
CDS-3UTR CAA 90 bp AGTCTATGTACAGAATGGGGCAGAGCCCCGTGCCCAGCTAGAGAGCTGAGAGTGTCAATTCCTTCTTGCTaGTCCTTGATGGCCACCCGG +
Preference number: 5 (lower is better)
Translates to: SLCTEWGRAPCPARELRVSIPSC*SLMATR
Trigger: CCGGGTGGCCATCAAGGACAAGCAAGAAGGAATTGA...CACTCTCAGCTCTCTAGCTGGGCACGGGGCTCTGCCCCATTCTGTACATAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041366.14
ENSMUST00000111129.2