Pregenerated sensors for POLR2I (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019738Ensembl transcript IDs: ENSMUST00000019882.16, ENSMUST00000108192.2, ENSMUST00000108193.2, ENSMUST00000149654.8
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGTGTaGGGCAGTGCAAACATAGTACAGGCGCATGGCGTC | + |
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Preference number: 3 (lower is better) Translates to: KERSLSPAVAAV*GSANIVQAHGV Trigger: GACGCCATGCGCCTGTACTATGTTTGCACTGCCCCACACTGCGGCCACCGCTGGACTGAGTGATCGTTCCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR CCA 90 bp | TGGCATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCCCGTCCGGGGCAACGTaGGGTCCTGGGACACGTCTG | + |
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Preference number: 4 (lower is better) Translates to: WHLLQVEEGTITQSSGGRPSGAT*GPGTRL Trigger: CAGACGTGTCCCAGGACCCCACGTTGCCCCGGACGG...GCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR CCA 90 bp | TGGCATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCGGCAACGTGGGGTCCTaGGACACGTCTGCGATGATC | + |
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Preference number: 4 (lower is better) Translates to: WHLLQVEEGTITQSSGGRGNVGS*DTSAMI Trigger: GATCATCGCAGACGTGTCCCAGGACCCCACGTTGCC...GCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR GCA 90 bp | TGGCATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCGTCCTGGGACACGTCTaGGATGATCTGGGTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: WHLLQVEEGTITQSSGGRVLGHV*DDLGQL Trigger: GAGCTGACCCAGATCATCGCAGACGTGTCCCAGGAC...GCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR CCA 90 bp | CATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGTTTGTGGCCACACTTCTaGCACGGGTGGTCCTCCGTC | + |
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Preference number: 4 (lower is better) Translates to: HLLQVEEGTITQSSGGRSLWPHF*HGWSSV Trigger: GACGGAGGACCACCCGTGCCAGAAGTGTGGCCACAA...ACTGCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR TCA 90 bp | TTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGTGTGAGCTCGGGCACTGTGTaGCTGAAAGAACACTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LLQVEEGTITQSSGGRSVSSGTV*LKEHCL Trigger: GAGGCAGTGTTCTTTCAGTCACACAGTGCCCGAGCT...CACACTGCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR TCA 90 bp | CATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGTCGGGCACTGTGTGACTaGAAGAACACTGCCTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: HLLQVEEGTITQSSGGRSRALCD*KNTASL Trigger: CAAGGAGGCAGTGTTCTTTCAGTCACACAGTGCCCG...ACTGCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR GCA 90 bp | TTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGTGTGACGCGTACAGCAGAATaGGATTTTCCTTGTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLQVEEGTITQSSGGRSVTRTAE*DFPCPP Trigger: AGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGT...CACACTGCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR CCA 90 bp | TGGCATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCATGTTATTACATTCCTaGCAGAACCGAATACCCACG | + |
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Preference number: 4 (lower is better) Translates to: WHLLQVEEGTITQSSGGRMLLHS*QNRIPT Trigger: CGTGGGTATTCGGTTCTGCCAGGAATGTAATAACAT...GCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS-3UTR CCA 90 bp | ATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGTGTTTCCTTGTCCTCCTTaGGGTACAGCATGTTATTAC | + |
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Preference number: 4 (lower is better) Translates to: IYYRWKKERSLSPAVAAVFPCPP*GTACYY Trigger: GTAATAACATGCTGTACCCCAAGGAGGACAAGGAAA...CACTGCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS CCA 90 bp | CACTTCTGGCACGGGTGGTCCTCCGTCCGGGGCAACGTGGGGTCCTaGGACACGTCTGCGATGATCTGGGTCAGCTCGTCCACTTCGTGC | + |
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Preference number: 5 (lower is better) Translates to: HFWHGWSSVRGNVGS*DTSAMIWVSSSTSC Trigger: GCACGAAGTGGACGAGCTGACCCAGATCATCGCAGACGTGTCCCAGGACCCCACGTTGCCCCGGACGGAGGACCACCCGTGCCAGAAGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 ENSMUST00000108193.2 ENSMUST00000149654.8 |
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| CDS-3UTR CAA 90 bp | TGGCATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCAGAATGCGATTTTCCTaGTCCTCCTTGGGGTACAGC | + |
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Preference number: 5 (lower is better) Translates to: WHLLQVEEGTITQSSGGRRMRFS*SSLGYS Trigger: GCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCT...GCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS CCA 90 bp | AATTCCGGCACGCGTACAGCAGAATGCGATTTTCCTTGTCCTCCTTaGGGTACAGCATGTTATTACATTCCTGGCAGAACCGAATACCCA | + |
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Preference number: 5 (lower is better) Translates to: NSGTRTAECDFPCPP*GTACYYIPGRTEYP Trigger: TGGGTATTCGGTTCTGCCAGGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTGCCGGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019882.16 |
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| CDS-3UTR CAA 90 bp | TGGCATTTATTACAGGTGGAAGAAGGAACGATCACTCAGTCCAGCGGTGGCCGCTTTTCCTTGTCCTCCTaGGGGTACAGCATGTTATTA | + |
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Preference number: 5 (lower is better) Translates to: WHLLQVEEGTITQSSGGRFSLSS*GYSMLL Trigger: TAATAACATGCTGTACCCCAAGGAGGACAAGGAAAA...GCGGCCACCGCTGGACTGAGTGATCGTTCCTTCTTCCACCTGTAATAAATGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS CCA 90 bp | TCCAACAAGACGCGTACAGCAGAATGCGATTTTCCTTGTCCTCCTTaGGGTACAGCATGTTATTACATTCCTGGCAGAACCGAATACCCA | + |
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Preference number: 5 (lower is better) Translates to: SNKTRTAECDFPCPP*GTACYYIPGRTEYP Trigger: TGGGTATTCGGTTCTGCCAGGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTCTTGTTGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS GCA 90 bp | GTGTCACAAACAGATCAGATCTCCAACAAGACGCGTACAGCAGAATaGGATTTTCCTTGTCCTCCTTGGGGTACAGCATGTTATTACATT | + |
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Preference number: 5 (lower is better) Translates to: VSQTDQISNKTRTAE*DFPCPPWGTACYYI Trigger: AATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTCTTGTTGGAGATCTGATCTGTTTGTGACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS CCA 72 bp | CACGGGTGGTCCTCCGTCCGGGGCAACGTGGGGTCCTaGGACACGTCTGCGATGATCTGGGTCAGCTCGTCC | + |
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Preference number: 6 (lower is better) Translates to: HGWSSVRGNVGS*DTSAMIWVSSS Trigger: GGACGAGCTGACCCAGATCATCGCAGACGTGTCCCAGGACCCCACGTTGCCCCGGACGGAGGACCACCCGTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 ENSMUST00000108193.2 ENSMUST00000149654.8 |
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| CDS CCA 72 bp | AACACTGCCTCCTTGTGGCCACACTTCTGGCACGGGTaGTCCTCCGTCCGGGGCAACGTGGGGTCCTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: NTASLWPHFWHG*SSVRGNVGSWD Trigger: GTCCCAGGACCCCACGTTGCCCCGGACGGAGGACCACCCGTGCCAGAAGTGTGGCCACAAGGAGGCAGTGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 ENSMUST00000108193.2 ENSMUST00000149654.8 |
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| CDS GCA 72 bp | CTCCGTCCGGGGCAACGTGGGGTCCTGGGACACGTCTaGGATGATCTGGGTCAGCTCGTCCACTTCGTGCGT | + |
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Preference number: 6 (lower is better) Translates to: LRPGQRGVLGHV*DDLGQLVHFVR Trigger: ACGCACGAAGTGGACGAGCTGACCCAGATCATCGCAGACGTGTCCCAGGACCCCACGTTGCCCCGGACGGAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 ENSMUST00000108193.2 ENSMUST00000149654.8 |
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| CDS TCA 72 bp | AGGCGCATGGCGTCCTCAGCTCGGGCACTGTGTGACTaGAAGAACACTGCCTCCTTGTGGCCACACTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: RRMASSARALCD*KNTASLWPHFW Trigger: CCAGAAGTGTGGCCACAAGGAGGCAGTGTTCTTTCAGTCACACAGTGCCCGAGCTGAGGACGCCATGCGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 |
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| CDS TCA 72 bp | GTACAGGCGCATGGCGTCCTCAGCTCGGGCACTGTGTaGCTGAAAGAACACTGCCTCCTTGTGGCCACACTT | + |
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Preference number: 6 (lower is better) Translates to: VQAHGVLSSGTV*LKEHCLLVATL Trigger: AAGTGTGGCCACAAGGAGGCAGTGTTCTTTCAGTCACACAGTGCCCGAGCTGAGGACGCCATGCGCCTGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 |
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| CDS CCA 72 bp | GGCAACGTGGGGTCCTGGGACACGTCTGCGATGATCTaGGTCAGCTCGTCCACTTCGTGCGTGATTTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: GNVGSWDTSAMI*VSSSTSCVILL Trigger: CAACAAAATCACGCACGAAGTGGACGAGCTGACCCAGATCATCGCAGACGTGTCCCAGGACCCCACGTTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000019882.16 ENSMUST00000108192.2 ENSMUST00000108193.2 ENSMUST00000149654.8 |
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| CDS GCA 72 bp | GCTGGTAATCGCAATTCCGGCACGCGTACAGCAGAATaGGATTTTCCTTGTCCTCCTTGGGGTACAGCATGT | + |
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Preference number: 6 (lower is better) Translates to: AGNRNSGTRTAE*DFPCPPWGTAC Trigger: ACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTGCCGGAATTGCGATTACCAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019882.16 |
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| CDS CAA 90 bp | CAATTCCGGCACGCGTACAGCAGAATGCGATTTTCCTTGTCCTCCTaGGGGTACAGCATGTTATTACATTCCTGGCAGAACCGAATACCC | + |
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Preference number: 6 (lower is better) Translates to: QFRHAYSRMRFSLSS*GYSMLLHSWQNRIP Trigger: GGGTATTCGGTTCTGCCAGGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTGCCGGAATTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019882.16 |
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| CDS CAA 90 bp | CTCCAACAAGACGCGTACAGCAGAATGCGATTTTCCTTGTCCTCCTaGGGGTACAGCATGTTATTACATTCCTGGCAGAACCGAATACCC | + |
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Preference number: 6 (lower is better) Translates to: LQQDAYSRMRFSLSS*GYSMLLHSWQNRIP Trigger: GGGTATTCGGTTCTGCCAGGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTCTTGTTGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS GCA 72 bp | ACAGATCAGATCTCCAACAAGACGCGTACAGCAGAATaGGATTTTCCTTGTCCTCCTTGGGGTACAGCATGT | + |
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Preference number: 6 (lower is better) Translates to: TDQISNKTRTAE*DFPCPPWGTAC Trigger: ACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTCTTGTTGGAGATCTGATCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS CAA 72 bp | CAATTCCGGCACGCGTACAGCAGAATGCGATTTTCCTaGTCCTCCTTGGGGTACAGCATGTTATTACATTCC | + |
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Preference number: 6 (lower is better) Translates to: QFRHAYSRMRFS*SSLGYSMLLHS Trigger: GGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTGCCGGAATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019882.16 |
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| CDS CAA 90 bp | AGATCAGATCTCCAACAAGACGCGTACAGCAGAATGCGATTTTCCTaGTCCTCCTTGGGGTACAGCATGTTATTACATTCCTGGCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: RSDLQQDAYSRMRFS*SSLGYSMLLHSWQN Trigger: GTTCTGCCAGGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTCTTGTTGGAGATCTGATCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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| CDS CAA 72 bp | CTCCAACAAGACGCGTACAGCAGAATGCGATTTTCCTaGTCCTCCTTGGGGTACAGCATGTTATTACATTCC | + |
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Preference number: 6 (lower is better) Translates to: LQQDAYSRMRFS*SSLGYSMLLHS Trigger: GGAATGTAATAACATGCTGTACCCCAAGGAGGACAAGGAAAATCGCATTCTGCTGTACGCGTCTTGTTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000108193.2 |
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