Pregenerated sensors for POLR2H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021018Ensembl transcript IDs: ENSMUST00000021405.8, ENSMUST00000161038.2, ENSMUST00000231392.2, ENSMUST00000231656.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCACAGTGTCCATGACATaGGTGACTAAGCAGCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: PLHSDKLKTSPQWTEFRPTVSMT*VTKQQV Trigger: GACTTGCTGCTTAGTCACTCATGTCATGGACACTGT...GGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| 3UTR-3UTR TCA 90 bp | TCCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCACAGTGTCCATGACATaGGTGACTAAGCAGCAAGTC | + |
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Preference number: 2 (lower is better) Translates to: STAFRQTEDVPTVDRVPPTVSMT*VTKQQV Trigger: GACTTGCTGCTTAGTCACTCATGTCATGGACACTGT...GGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| 3UTR-3UTR CCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGAAGACGTCCCCACAGTaGACAGAGTTCCGCCCCTTT | + |
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Preference number: 2 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEKTSPQ*TEFRPF Trigger: AAAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTT...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS-3UTR TCA 90 bp | CCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCCACCCTGAAGCCTCATaGGCAGGCCCCCATAGGACA | + |
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Preference number: 4 (lower is better) Translates to: PLHSDKLKTSPQWTEFRPHPEAS*AGPHRT Trigger: TGTCCTATGGGGGCCTGCTCATGAGGCTTCAGGGTG...GGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | CCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCCAAACTGGTCAGCCCTaGAAGGCCTGTCATCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PLHSDKLKTSPQWTEFRPQTGQP*KACHLW Trigger: CCACAGATGACAGGCCTTCCAGGGCTGACCAGTTTG...GGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | CCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCGTGTGGCTGCTTCAGTaGAGGTCTCATCCCCTTCGA | + |
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Preference number: 4 (lower is better) Translates to: PLHSDKLKTSPQWTEFRPVWLLQ*RSHPLR Trigger: TCGAAGGGGATGAGACCTCCACTGAAGCAGCCACAC...GGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS-3UTR TCA 90 bp | ACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTTTGTTGGCATCACCCTaGAGCCTCATGAGCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: TAFRQTEDVPTVDRVPPLLLASP*SLMSRP Trigger: GGGCCTGCTCATGAGGCTTCAGGGTGATGCCAACAA...AAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR TCA 90 bp | CTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTTTTGTTGGCATCACCCTaGAGCCTCATGAGCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: LHSDKLKTSPQWTEFRPFLLASP*SLMSRP Trigger: GGGCCTGCTCATGAGGCTTCAGGGTGATGCCAACAA...AAAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | TCCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCAAACTGGTCAGCCCTaGAAGGCCTGTCATCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: STAFRQTEDVPTVDRVPPQTGQP*KACHLW Trigger: CCACAGATGACAGGCCTTCCAGGGCTGACCAGTTTG...GGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR GCA 90 bp | CTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTTAGAGAGGCGTGTGGCTaGTTCAGTGGAGGTCTCATC | + |
|
Preference number: 4 (lower is better) Translates to: LHSDKLKTSPQWTEFRPFREACG*FSGGLI Trigger: GATGAGACCTCCACTGAAGCAGCCACACGCCTCTCT...AAAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS-3UTR GCA 90 bp | CCACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTCCACCTCAAATCCATaGAGGTTGTTGGCATCACCC | + |
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Preference number: 4 (lower is better) Translates to: PLHSDKLKTSPQWTEFRPSTSNP*RLLASP Trigger: GGGTGATGCCAACAACCTGCATGGATTTGAGGTGGA...GGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | ACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTATGACATACTCAAACTaGTCAGCCCTGGAAGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: TAFRQTEDVPTVDRVPPLMTYSN*SALEGL Trigger: CAGGCCTTCCAGGGCTGACCAGTTTGAGTATGTCAT...AAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | CAGCAGATAAACTCTGGAGTCCACCTCAAATCCATGCAGGTTGTTGGCATCACCGTGTGGCTGCTTCAGTaGAGGTCTCATCCCCTTCGA | + |
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Preference number: 4 (lower is better) Translates to: QQINSGVHLKSMQVVGITVWLLQ*RSHPLR Trigger: TCGAAGGGGATGAGACCTCCACTGAAGCAGCCACAC...GGTGATGCCAACAACCTGCATGGATTTGAGGTGGACTCCAGAGTTTATCTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231656.2 |
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| CDS-3UTR CCA 90 bp | ACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTATCCATGCAGGTTGTTaGCATCACCCTGAAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: TAFRQTEDVPTVDRVPPLIHAGC*HHPEAS Trigger: TGAGGCTTCAGGGTGATGCCAACAACCTGCATGGAT...AAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR TCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGCACCCTGAAGCCTCATaGGCAGGCCCCCATAGGACA | + |
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Preference number: 4 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEHPEAS*AGPHRT Trigger: TGTCCTATGGGGGCCTGCTCATGAGGCTTCAGGGTG...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | ACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTAAGGCCTGTCATCTGTaGGGTTGTATTCACCATCAT | + |
|
Preference number: 4 (lower is better) Translates to: TAFRQTEDVPTVDRVPPLKACHL*GCIHHH Trigger: ATGATGGTGAATACAACCCCACAGATGACAGGCCTT...AAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR GCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGAGAGAGGCGTGTGGCTaGTTCAGTGGAGGTCTCATC | + |
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Preference number: 4 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEREACG*FSGGLI Trigger: GATGAGACCTCCACTGAAGCAGCCACACGCCTCTCT...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS-3UTR CCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGGTGTGGCTGCTTCAGTaGAGGTCTCATCCCCTTCGA | + |
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Preference number: 4 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEVWLLQ*RSHPLR Trigger: TCGAAGGGGATGAGACCTCCACTGAAGCAGCCACAC...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS-3UTR GCA 90 bp | CAGCAGATAAACTCTGGAGTCCACCTCAAATCCATGCAGGTTGTTGGCATCACCCTCGGTCAAATTTCTTaGCTTCTGGGTCGATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: QQINSGVHLKSMQVVGITLGQIS*LLGRCL Trigger: AAGACATCGACCCAGAAGGCAAGAAATTTGACCGAG...GGTGATGCCAACAACCTGCATGGATTTGAGGTGGACTCCAGAGTTTATCTGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231656.2 |
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| CDS-3UTR CCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGATCCATGCAGGTTGTTaGCATCACCCTGAAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEIHAGC*HHPEAS Trigger: TGAGGCTTCAGGGTGATGCCAACAACCTGCATGGAT...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS-3UTR CCA 90 bp | CTTCATCAGCAGATAAACTCTGGAGTCCACCTCAAATCCATGCAGGTTGTTGGCATGACATACTCAAACTaGTCAGCCCTAAGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: LHQQINSGVHLKSMQVVGMTYSN*SALSPQ Trigger: CTGTGGACTTAGGGCTGACCAGTTTGAGTATGTCAT...GCCAACAACCTGCATGGATTTGAGGTGGACTCCAGAGTTTATCTGCTGATGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231656.2 |
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| CDS-3UTR GCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGCTCGGTCAAATTTCTTaGCTTCTGGGTCGATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: KIIYNFRFMLSSPSRPSELGQIS*LLGRCL Trigger: AAGACATCGACCCAGAAGGCAAGAAATTTGACCGAG...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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| CDS-3UTR CCA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGAAGGCCTGTCATCTGTaGGGTTGTATTCACCATCAT | + |
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Preference number: 4 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEKACHL*GCIHHH Trigger: ATGATGGTGAATACAACCCCACAGATGACAGGCCTT...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS TCA 90 bp | CCACCTCAAATCCATGCAGGTTGTTGGCATCACCCTGAAGCCTCATaGGCAGGCCCCCATAGGACACGTACGCAGAGAGGCGTGTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PPQIHAGCWHHPEAS*AGPHRTRTQRGVWL Trigger: CAGCCACACGCCTCTCTGCGTACGTGTCCTATGGGGGCCTGCTCATGAGGCTTCAGGGTGATGCCAACAACCTGCATGGATTTGAGGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000161038.2 ENSMUST00000231392.2 |
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| CDS CCA 90 bp | ACTCTCACAGTGCAGCCGGGATACTCGGTCAAATTTCTTGCCTTCTaGGTCGATGTCTTTCACATCGAAAATATCCTCGAACAGGATGCC | + |
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Preference number: 5 (lower is better) Translates to: TLTVQPGYSVKFLAF*VDVFHIENILEQDA Trigger: GGCATCCTGTTCGAGGATATTTTCGATGTGAAAGACATCGACCCAGAAGGCAAGAAATTTGACCGAGTATCCCGGCTGCACTGTGAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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| CDS-3UTR CAA 90 bp | ACTGCATTCAGACAAACTGAAGACGTCCCCACAGTGGACAGAGTTCCGCCCCTTAAGATGAGGTCCATCTaGAAAGATTCACTCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: TAFRQTEDVPTVDRVPPLKMRSI*KDSLSQ Trigger: CTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTT...AAGGGGCGGAACTCTGTCCACTGTGGGGACGTCTTCAGTTTGTCTGAATGCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS GCA 90 bp | TTTACATCTAAGATGAGGTCCATCTTGAAAGATTCACTCTCACAGTaGAGCCGGGATACTCGGTCAAATTTCTTGCCTTCTGGGTCGATG | + |
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Preference number: 5 (lower is better) Translates to: FTSKMRSILKDSLSQ*SRDTRSNFLPSGSM Trigger: CATCGACCCAGAAGGCAAGAAATTTGACCGAGTATCCCGGCTGCACTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTTAGATGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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| CDS-3UTR CAA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGCTGTCATCTGTGGGGTaGTATTCACCATCATCCAAG | + |
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Preference number: 5 (lower is better) Translates to: KIIYNFRFMLSSPSRPSELSSVG*YSPSSK Trigger: CTTGGATGATGGTGAATACAACCCCACAGATGACAG...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 |
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| CDS GCA 90 bp | TTTACATCTAAGATGAGGTCCATCTTGAAAGATTCACTCTCACAGTaGAGCCGGGATACGGGCACCAGGCACCGCAAATATAATAGAAAA | + |
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Preference number: 5 (lower is better) Translates to: FTSKMRSILKDSLSQ*SRDTGTRHRKYNRK Trigger: TTTTCTATTATATTTGCGGTGCCTGGTGCCCGTATCCCGGCTGCACTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTTAGATGTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231392.2 |
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| CDS-3UTR CAA 90 bp | AAAATCATATACAACTTCAGGTTCATGCTAAGTTCTCCCTCTCGGCCTTCCGAGAAGATGAGGTCCATCTaGAAAGATTCACTCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: KIIYNFRFMLSSPSRPSEKMRSI*KDSLSQ Trigger: CTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTT...CTCGGAAGGCCGAGAGGGAGAACTTAGCATGAACCTGAAGTTGTATATGATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS GCA 72 bp | GCCCCCATAGGACACGTACGCAGAGAGGCGTGTGGCTaGTTCAGTGGAGGTCTCATCCCCTTCGATCCTGTA | + |
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Preference number: 6 (lower is better) Translates to: APIGHVRREACG*FSGGLIPFDPV Trigger: TACAGGATCGAAGGGGATGAGACCTCCACTGAAGCAGCCACACGCCTCTCTGCGTACGTGTCCTATGGGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000021405.8 ENSMUST00000161038.2 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS CCA 72 bp | AGGACACGTACGCAGAGAGGCGTGTGGCTGCTTCAGTaGAGGTCTCATCCCCTTCGATCCTGTACACTTTCC | + |
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Preference number: 6 (lower is better) Translates to: RTRTQRGVWLLQ*RSHPLRSCTLS Trigger: GGAAAGTGTACAGGATCGAAGGGGATGAGACCTCCACTGAAGCAGCCACACGCCTCTCTGCGTACGTGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000021405.8 ENSMUST00000161038.2 ENSMUST00000231392.2 ENSMUST00000231656.2 |
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| CDS GCA 72 bp | AAGATGAGGTCCATCTTGAAAGATTCACTCTCACAGTaGAGCCGGGATACGGGCACCAGGCACCGCAAATAT | + |
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Preference number: 6 (lower is better) Translates to: KMRSILKDSLSQ*SRDTGTRHRKY Trigger: ATATTTGCGGTGCCTGGTGCCCGTATCCCGGCTGCACTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231392.2 |
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| CDS CCA 72 bp | ACTCAAACTGGTCAGCCCTGGAAGGCCTGTCATCTGTaGGGTTGTATTCACCATCATCCAAGGTACCATCTT | + |
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Preference number: 6 (lower is better) Translates to: TQTGQPWKACHL*GCIHHHPRYHL Trigger: AAGATGGTACCTTGGATGATGGTGAATACAACCCCACAGATGACAGGCCTTCCAGGGCTGACCAGTTTGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000161038.2 ENSMUST00000231392.2 |
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| CDS CAA 72 bp | AACTGGTCAGCCCTGGAAGGCCTGTCATCTGTGGGGTaGTATTCACCATCATCCAAGGTACCATCTTCATAC | + |
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Preference number: 6 (lower is better) Translates to: NWSALEGLSSVG*YSPSSKVPSSY Trigger: GTATGAAGATGGTACCTTGGATGATGGTGAATACAACCCCACAGATGACAGGCCTTCCAGGGCTGACCAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000161038.2 ENSMUST00000231392.2 |
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| CDS CCA 72 bp | GTGCAGCCGGGATACTCGGTCAAATTTCTTGCCTTCTaGGTCGATGTCTTTCACATCGAAAATATCCTCGAA | + |
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Preference number: 6 (lower is better) Translates to: VQPGYSVKFLAF*VDVFHIENILE Trigger: TTCGAGGATATTTTCGATGTGAAAGACATCGACCCAGAAGGCAAGAAATTTGACCGAGTATCCCGGCTGCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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| CDS CAA 72 bp | CTCTCACAGTGCAGCCGGGATACTCGGTCAAATTTCTaGCCTTCTGGGTCGATGTCTTTCACATCGAAAATA | + |
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Preference number: 6 (lower is better) Translates to: LSQCSRDTRSNF*PSGSMSFTSKI Trigger: TATTTTCGATGTGAAAGACATCGACCCAGAAGGCAAGAAATTTGACCGAGTATCCCGGCTGCACTGTGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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| CDS CAA 90 bp | ACATACTCAAACTGGTCAGCCCTGGAAGGCCTGTCATCTGTGGGGTaGTATTCACCATCATCCAAGGTACCATCTTCATACAAAGTACTA | + |
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Preference number: 6 (lower is better) Translates to: TYSNWSALEGLSSVG*YSPSSKVPSSYKVL Trigger: TAGTACTTTGTATGAAGATGGTACCTTGGATGATGGTGAATACAACCCCACAGATGACAGGCCTTCCAGGGCTGACCAGTTTGAGTATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021405.8 ENSMUST00000161038.2 ENSMUST00000231392.2 |
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| CDS GCA 72 bp | TCTCACAGTGCAGCCGGGATACTCGGTCAAATTTCTTaGCTTCTGGGTCGATGTCTTTCACATCGAAAATAT | + |
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Preference number: 6 (lower is better) Translates to: SHSAAGILGQIS*LLGRCLSHRKY Trigger: ATATTTTCGATGTGAAAGACATCGACCCAGAAGGCAAGAAATTTGACCGAGTATCCCGGCTGCACTGTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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| CDS GCA 72 bp | AAGATGAGGTCCATCTTGAAAGATTCACTCTCACAGTaGAGCCGGGATACTCGGTCAAATTTCTTGCCTTCT | + |
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Preference number: 6 (lower is better) Translates to: KMRSILKDSLSQ*SRDTRSNFLPS Trigger: AGAAGGCAAGAAATTTGACCGAGTATCCCGGCTGCACTGTGAGAGTGAATCTTTCAAGATGGACCTCATCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021405.8 ENSMUST00000231656.2 |
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