Pregenerated sensors for POLR2F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033020Ensembl transcript IDs: ENSMUST00000040077.8, ENSMUST00000229973.2, ENSMUST00000230271.2
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | TGCCCAGCACCCGGGCCCGCTCATACTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATGGGAGAA | + |
Preference number: 5 (lower is better) Translates to: CPAPGPAHTWSCKEW*SASGWPVVAHQMGE Trigger: TTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGTATGAGCGGGCCCGGGTGCTGGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229973.2 ENSMUST00000230271.2 |
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CDS CCA 90 bp | GCTGATGATAAGCTCGTCCACGCCCCAGTCCTCATAGCTGCCGTCTaGCAGGTACCGGCGAATGATGATGGGGATCTTCCGCGCCTTGAG | + |
Preference number: 5 (lower is better) Translates to: ADDKLVHAPVLIAAV*QVPANDDGDLPRLE Trigger: CTCAAGGCGCGGAAGATCCCCATCATCATTCGCCGGTACCTGCCAGACGGCAGCTATGAGGACTGGGGCGTGGACGAGCTTATCATCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040077.8 ENSMUST00000230271.2 |
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CDS CCA 90 bp | AGGAGTGGTGATCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATaGGAGAATCTCGACATTTTCCTGGCCCTCCTCCTCAGCATTTTC | + |
Preference number: 5 (lower is better) Translates to: RSGDPLLVGLWSLTR*ENLDIFLALLLSIF Trigger: GAAAATGCTGAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040077.8 ENSMUST00000229973.2 ENSMUST00000230271.2 |
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CDS CCA 90 bp | TTGGCCTGTGGTCGCTCACCAGATGGGAGAATCTCGACATTTTCCTaGCCCTCCTCCTCAGCATTTTCCAAGTCGTCAAGTCCTTCGTCC | + |
Preference number: 5 (lower is better) Translates to: LACGRSPDGRISTFS*PSSSAFSKSSSPSS Trigger: GGACGAAGGACTTGACGACTTGGAAAATGCTGAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040077.8 ENSMUST00000229973.2 ENSMUST00000230271.2 |
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CDS GCA 72 bp | TCACCGGGGCACACATCGCGATCTGAAGAGCCCGGGTaGCCAGCACCCGGGCCCGCTCATACTTGGTCATGT | + |
Preference number: 6 (lower is better) Translates to: SPGHTSRSEEPG*PAPGPAHTWSC Trigger: ACATGACCAAGTATGAGCGGGCCCGGGTGCTGGGCACCCGGGCTCTTCAGATCGCGATGTGTGCCCCGGTGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000229973.2 ENSMUST00000230271.2 |
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CDS TCA 72 bp | CCCGGGCCCGCTCATACTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAG | + |
Preference number: 6 (lower is better) Translates to: PGPAHTWSCKEW*SASGWPVVAHQ Trigger: CTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGTATGAGCGGGCCCGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229973.2 ENSMUST00000230271.2 |
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CDS CCA 72 bp | AAGCTCGTCCACGCCCCAGTCCTCATAGCTGCCGTCTaGCAGGTACCGGCGAATGATGATGGGGATCTTCCG | + |
Preference number: 6 (lower is better) Translates to: KLVHAPVLIAAV*QVPANDDGDLP Trigger: CGGAAGATCCCCATCATCATTCGCCGGTACCTGCCAGACGGCAGCTATGAGGACTGGGGCGTGGACGAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040077.8 ENSMUST00000230271.2 |
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CDS TCA 72 bp | TCACCGGGGCACACATCTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAG | + |
Preference number: 6 (lower is better) Translates to: SPGHTSWSCKEW*SASGWPVVAHQ Trigger: CTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGATGTGTGCCCCGGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040077.8 |
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CDS CCA 72 bp | GATCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATaGGAGAATCTCGACATTTTCCTGGCCCTCCTCCTC | + |
Preference number: 6 (lower is better) Translates to: DPLLVGLWSLTR*ENLDIFLALLL Trigger: GAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040077.8 ENSMUST00000229973.2 ENSMUST00000230271.2 |