Pregenerated sensors for POLR2F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033020

Ensembl transcript IDs: ENSMUST00000040077.8, ENSMUST00000229973.2, ENSMUST00000230271.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGCCCAGCACCCGGGCCCGCTCATACTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATGGGAGAA	+
Preference number: 5 (lower is better) Translates to: CPAPGPAHTWSCKEW*SASGWPVVAHQMGE Trigger: TTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGTATGAGCGGGCCCGGGTGCTGGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229973.2 ENSMUST00000230271.2
CDS CCA 90 bp	GCTGATGATAAGCTCGTCCACGCCCCAGTCCTCATAGCTGCCGTCTaGCAGGTACCGGCGAATGATGATGGGGATCTTCCGCGCCTTGAG	+
Preference number: 5 (lower is better) Translates to: ADDKLVHAPVLIAAV*QVPANDDGDLPRLE Trigger: CTCAAGGCGCGGAAGATCCCCATCATCATTCGCCGGTACCTGCCAGACGGCAGCTATGAGGACTGGGGCGTGGACGAGCTTATCATCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040077.8 ENSMUST00000230271.2
CDS CCA 90 bp	AGGAGTGGTGATCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATaGGAGAATCTCGACATTTTCCTGGCCCTCCTCCTCAGCATTTTC	+
Preference number: 5 (lower is better) Translates to: RSGDPLLVGLWSLTR*ENLDIFLALLLSIF Trigger: GAAAATGCTGAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040077.8 ENSMUST00000229973.2 ENSMUST00000230271.2
CDS CCA 90 bp	TTGGCCTGTGGTCGCTCACCAGATGGGAGAATCTCGACATTTTCCTaGCCCTCCTCCTCAGCATTTTCCAAGTCGTCAAGTCCTTCGTCC	+
Preference number: 5 (lower is better) Translates to: LACGRSPDGRISTFS*PSSSAFSKSSSPSS Trigger: GGACGAAGGACTTGACGACTTGGAAAATGCTGAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000040077.8 ENSMUST00000229973.2 ENSMUST00000230271.2
CDS GCA 72 bp	TCACCGGGGCACACATCGCGATCTGAAGAGCCCGGGTaGCCAGCACCCGGGCCCGCTCATACTTGGTCATGT	+
Preference number: 6 (lower is better) Translates to: SPGHTSRSEEPG*PAPGPAHTWSC Trigger: ACATGACCAAGTATGAGCGGGCCCGGGTGCTGGGCACCCGGGCTCTTCAGATCGCGATGTGTGCCCCGGTGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000229973.2 ENSMUST00000230271.2
CDS TCA 72 bp	CCCGGGCCCGCTCATACTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAG	+
Preference number: 6 (lower is better) Translates to: PGPAHTWSCKEW*SASGWPVVAHQ Trigger: CTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGTATGAGCGGGCCCGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000229973.2 ENSMUST00000230271.2
CDS CCA 72 bp	AAGCTCGTCCACGCCCCAGTCCTCATAGCTGCCGTCTaGCAGGTACCGGCGAATGATGATGGGGATCTTCCG	+
Preference number: 6 (lower is better) Translates to: KLVHAPVLIAAV*QVPANDDGDLP Trigger: CGGAAGATCCCCATCATCATTCGCCGGTACCTGCCAGACGGCAGCTATGAGGACTGGGGCGTGGACGAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040077.8 ENSMUST00000230271.2
CDS TCA 72 bp	TCACCGGGGCACACATCTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAG	+
Preference number: 6 (lower is better) Translates to: SPGHTSWSCKEW*SASGWPVVAHQ Trigger: CTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGATGTGTGCCCCGGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040077.8
CDS CCA 72 bp	GATCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATaGGAGAATCTCGACATTTTCCTGGCCCTCCTCCTC	+
Preference number: 6 (lower is better) Translates to: DPLLVGLWSLTR*ENLDIFLALLL Trigger: GAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000040077.8 ENSMUST00000229973.2 ENSMUST00000230271.2