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Pregenerated sensors for POLR2F (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033020

Ensembl transcript IDs: ENSMUST00000040077.8, ENSMUST00000229973.2, ENSMUST00000230271.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp TGCCCAGCACCCGGGCCCGCTCATACTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATGGGAGAA +
Preference number: 5 (lower is better)
Translates to: CPAPGPAHTWSCKEW*SASGWPVVAHQMGE
Trigger: TTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGTATGAGCGGGCCCGGGTGCTGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000229973.2
ENSMUST00000230271.2
CDS CCA 90 bp GCTGATGATAAGCTCGTCCACGCCCCAGTCCTCATAGCTGCCGTCTaGCAGGTACCGGCGAATGATGATGGGGATCTTCCGCGCCTTGAG +
Preference number: 5 (lower is better)
Translates to: ADDKLVHAPVLIAAV*QVPANDDGDLPRLE
Trigger: CTCAAGGCGCGGAAGATCCCCATCATCATTCGCCGGTACCTGCCAGACGGCAGCTATGAGGACTGGGGCGTGGACGAGCTTATCATCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040077.8
ENSMUST00000230271.2
CDS CCA 90 bp AGGAGTGGTGATCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATaGGAGAATCTCGACATTTTCCTGGCCCTCCTCCTCAGCATTTTC +
Preference number: 5 (lower is better)
Translates to: RSGDPLLVGLWSLTR*ENLDIFLALLLSIF
Trigger: GAAAATGCTGAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040077.8
ENSMUST00000229973.2
ENSMUST00000230271.2
CDS CCA 90 bp TTGGCCTGTGGTCGCTCACCAGATGGGAGAATCTCGACATTTTCCTaGCCCTCCTCCTCAGCATTTTCCAAGTCGTCAAGTCCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: LACGRSPDGRISTFS*PSSSAFSKSSSPSS
Trigger: GGACGAAGGACTTGACGACTTGGAAAATGCTGAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040077.8
ENSMUST00000229973.2
ENSMUST00000230271.2
CDS GCA 72 bp TCACCGGGGCACACATCGCGATCTGAAGAGCCCGGGTaGCCAGCACCCGGGCCCGCTCATACTTGGTCATGT +
Preference number: 6 (lower is better)
Translates to: SPGHTSRSEEPG*PAPGPAHTWSC
Trigger: ACATGACCAAGTATGAGCGGGCCCGGGTGCTGGGCACCCGGGCTCTTCAGATCGCGATGTGTGCCCCGGTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000229973.2
ENSMUST00000230271.2
CDS TCA 72 bp CCCGGGCCCGCTCATACTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAG +
Preference number: 6 (lower is better)
Translates to: PGPAHTWSCKEW*SASGWPVVAHQ
Trigger: CTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGTATGAGCGGGCCCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000229973.2
ENSMUST00000230271.2
CDS CCA 72 bp AAGCTCGTCCACGCCCCAGTCCTCATAGCTGCCGTCTaGCAGGTACCGGCGAATGATGATGGGGATCTTCCG +
Preference number: 6 (lower is better)
Translates to: KLVHAPVLIAAV*QVPANDDGDLP
Trigger: CGGAAGATCCCCATCATCATTCGCCGGTACCTGCCAGACGGCAGCTATGAGGACTGGGGCGTGGACGAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040077.8
ENSMUST00000230271.2
CDS TCA 72 bp TCACCGGGGCACACATCTTGGTCATGTAAGGAGTGGTaGTCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAG +
Preference number: 6 (lower is better)
Translates to: SPGHTSWSCKEW*SASGWPVVAHQ
Trigger: CTGGTGAGCGACCACAGGCCAACCAGAAGCGGATCACCACTCCTTACATGACCAAGATGTGTGCCCCGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040077.8
CDS CCA 72 bp GATCCGCTTCTGGTTGGCCTGTGGTCGCTCACCAGATaGGAGAATCTCGACATTTTCCTGGCCCTCCTCCTC +
Preference number: 6 (lower is better)
Translates to: DPLLVGLWSLTR*ENLDIFLALLL
Trigger: GAGGAGGAGGGCCAGGAAAATGTCGAGATTCTCCCATCTGGTGAGCGACCACAGGCCAACCAGAAGCGGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040077.8
ENSMUST00000229973.2
ENSMUST00000230271.2