Pregenerated sensors for POLR2E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004667Ensembl transcript IDs: ENSMUST00000004786.10
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCACAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTaGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCT | + |
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Preference number: 1 (lower is better) Translates to: PTGCGPQLSGCCAEQ*ALGFPACGAAVGSS Trigger: AGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTGTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 90 bp | CCAGTTATGACCCACAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTaGAGAGCAGTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGT | + |
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Preference number: 1 (lower is better) Translates to: PVMTHRLWPTAVRVL*RAVGSGFPCMRCSC Trigger: ACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTGTGGGTCATAACTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CCA 90 bp | GGAACCCGTCAGTCAAAAGGCAATCCAGTTATGACCCACAGGCTGTaGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGG | + |
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Preference number: 1 (lower is better) Translates to: GTRQSKGNPVMTHRL*PTAVRVLCRAVGSG Trigger: CCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTGTGGGTCATAACTGGATTGCCTTTTGACTGACGGGTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 90 bp | CTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATaGGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAGACAC | + |
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Preference number: 1 (lower is better) Translates to: LSGCCAEQWALGFPA*GAAVGSSSLFSWRH Trigger: GTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 90 bp | ACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTaGATGCGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAG | + |
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Preference number: 1 (lower is better) Translates to: TAVRVLCRAVGSGFP*MRCSCGFLFIVFLE Trigger: CTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 90 bp | AGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATGCGGTaGAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACA | + |
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Preference number: 1 (lower is better) Translates to: RVLCRAVGSGFPCMR*SCGFLFIVFLETLT Trigger: TGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CCA 90 bp | TTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTaGAGACACTCACACCGAGAAGGAGTCCACAGATGTGCAGCAATC | + |
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Preference number: 1 (lower is better) Translates to: FPACGAAVGSSSLFS*RHSHREGVHRCAAI Trigger: GATTGCTGCACATCTGTGGACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR-3UTR GCA 90 bp | CAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTAGGAGTCCACAGATGTaGAGCAATCCTCCTGCTTCA | + |
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Preference number: 2 (lower is better) Translates to: QAVAHSCQGAVQSSGLWVRSPQM*SNPPAS Trigger: TGAAGCAGGAGGATTGCTGCACATCTGTGGACTCCT...AACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR-3UTR CCA 90 bp | GGGTGTGGCTGCAGCTCTGGAGTCACTCATCCTGCGACAATGGCCAGGACGGAACATGCGGTGCAGCTGTaGGTTCCTCTTCATTGTTTT | + |
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Preference number: 2 (lower is better) Translates to: GCGCSSGVTHPATMARTEHAVQL*VPLHCF Trigger: AAAACAATGAAGAGGAACCCACAGCTGCACCGCATG...TTCCGTCCTGGCCATTGTCGCAGGATGAGTGACTCCAGAGCTGCAGCCACACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CAA 90 bp | GCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCTTCATaGTTTTCCTGGAGACACTCACACCGAGAAGGAGTCCACAGATGT | + |
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Preference number: 2 (lower is better) Translates to: ALGFPACGAAVGSSS*FSWRHSHREGVHRC Trigger: ACATCTGTGGACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CCA 72 bp | CACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTaGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCT | + |
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Preference number: 3 (lower is better) Translates to: HSCQGAVQSSGL*VSLHAVQLWVP Trigger: AGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 72 bp | GTGGGGGTGTGGCTGCAGCTCTGGAGTCACTCATCCTaGGACAATGGCCAGGACGGAACCCGTCAGTCAAAA | + |
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Preference number: 3 (lower is better) Translates to: VGVWLQLWSHSS*DNGQDGTRQSK Trigger: TTTTGACTGACGGGTTCCGTCCTGGCCATTGTCGCAGGATGAGTGACTCCAGAGCTGCAGCCACACCCCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 72 bp | AGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTaGATGCGGTGCAGCTGTGGGTTCCTCTTCATTGTT | + |
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Preference number: 3 (lower is better) Translates to: RVLCRAVGSGFP*MRCSCGFLFIV Trigger: AACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 72 bp | TGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATGCGGTaGAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: CRAVGSGFPCMR*SCGFLFIVFLE Trigger: CTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR GCA 72 bp | TGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATaGGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: CCAEQWALGFPA*GAAVGSSSLFS Trigger: GGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CCA 72 bp | CAGTCAAAAGGCAATCCAGTTATGACCCACAGGCTGTaGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTG | + |
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Preference number: 3 (lower is better) Translates to: QSKGNPVMTHRL*PTAVRVLCRAV Trigger: CACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTGTGGGTCATAACTGGATTGCCTTTTGACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CCA 72 bp | TGCGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTaGAGACACTCACACCGAGAAGGAGTCCACAGATGT | + |
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Preference number: 3 (lower is better) Translates to: CGAAVGSSSLFS*RHSHREGVHRC Trigger: ACATCTGTGGACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR TCA 90 bp | TGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTGCACCAGGCGGTAGGTaGTGTAGCGGCCAGCCGTCT | + |
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Preference number: 4 (lower is better) Translates to: CCAEQWALGFPACGAAVGAPGGR*CSGQPS Trigger: AGACGGCTGGCCGCTACATCACCTACCGCCTGGTGC...ACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | CAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTGAGGGCGTCATGCCCTaGTGCACCACAATCAGCGCC | + |
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Preference number: 4 (lower is better) Translates to: QAVAHSCQGAVQSSGLWVEGVMP*CTTISA Trigger: GGCGCTGATTGTGGTGCAGCAGGGCATGACGCCCTC...AACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | CAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTATGTCCACCAGGGACTaGTTGGCGGAGGGCGTCATG | + |
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Preference number: 4 (lower is better) Translates to: QAVAHSCQGAVQSSGLWVMSTRD*LAEGVM Trigger: CATGACGCCCTCCGCCAAGCAGTCCCTGGTGGACAT...AACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | GTGTGGCTGCAGCTCTGGAGTCACTCATCCTGCGACAATGGCCAGGACGGAACCGGCGTCATGCCCTGCTaGACCACAATCAGCGCCCGT | + |
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Preference number: 4 (lower is better) Translates to: VWLQLWSHSSCDNGQDGTGVMPC*TTISAR Trigger: ACGGGCGCTGATTGTGGTGCAGCAGGGCATGACGCC...GGTTCCGTCCTGGCCATTGTCGCAGGATGAGTGACTCCAGAGCTGCAGCCACAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CCA 90 bp | TGCTGTGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTTGGCCGTCCTTCGCTaGGCTTGTCCCCAAACTGCG | + |
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Preference number: 4 (lower is better) Translates to: CCAEQWALGFPACGAAVGLAVLR*ACPQTA Trigger: CGCAGTTTGGGGACAAGCCCAGCGAAGGACGGCCAA...ACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR TCA 90 bp | GGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGAAGGAGTCCACAGGGGCCACCAGCACCGTaGGGTCTGTGCGCCTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: GFLFIVFLETLTPRRSPQGPPAP*GLCALA Trigger: GGCCAAGGCGCACAGACCTCACGGTGCTGGTGGCCC...CTGTGGACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CCA 90 bp | GCAGTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCTTCATTCCCCGGCCTGGATTCTaGGTAGCTGGCTCTCACGAA | + |
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Preference number: 4 (lower is better) Translates to: AVGSGFPCMRCSCGFLFIPRPGF*VAGSHE Trigger: TTCGTGAGAGCCAGCTACCCAGAATCCAGGCCGGGG...AATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CCA 90 bp | GTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGAAGCCACCAGGGACTGCTTaGCGGAGGGCGTCATGCCCT | + |
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Preference number: 4 (lower is better) Translates to: VQLWVPLHCFPGDTHTEKPPGTA*RRASCP Trigger: AGGGCATGACGCCCTCCGCCAAGCAGTCCCTGGTGG...CTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR TCA 90 bp | GTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCTTCATTGTTCAATCAGCGCCCGTGTaGTGTTTTCCTCCTGCATGC | + |
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Preference number: 4 (lower is better) Translates to: VGSGFPCMRCSCGFLFIVQSAPV*CFPPAC Trigger: GCATGCAGGAGGAAAACATCACACGGGCGCTGATTG...AACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | GGGGTGTGGCTGCAGCTCTGGAGTCACTCATCCTGCGACAATGGCCAGGACGGATCAGGGACTAGCTCGTaGTCTGTGATATTGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: GVWLQLWSHSSCDNGQDGSGTSS*SVILMS Trigger: GCTCATCAATATCACAGAGCACGAGCTAGTCCCTGA...TCCGTCCTGGCCATTGTCGCAGGATGAGTGACTCCAGAGCTGCAGCCACACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | AGGCAATCCAGTTATGACCCACAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTGGGCTTGTCCCCAAACTaGGCCTTGAATTCCTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: RQSSYDPQAVAHSCQGAVGLSPN*ALNSSS Trigger: ACTTGAGGAATTCAAGGCGCAGTTTGGGGACAAGCC...CACAGCACCCTGACAGCTGTGGGCCACAGCCTGTGGGTCATAACTGGATTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | AGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGAAGGAGTGATCCCAAAGTACCGTaGCACTGGGTCCCCGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: SCGFLFIVFLETLTPRRSDPKVP*HWVPGL Trigger: CAGGCCGGGGACCCAGTGGCACGGTACTTTGGGATC...ACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CCA 90 bp | GTGTGGCTGCAGCTCTGGAGTCACTCATCCTGCGACAATGGCCAGGACGGAACCTGGATTCTGGGTAGCTaGCTCTCACGAAGCTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: VWLQLWSHSSCDNGQDGTWILGS*LSRSLY Trigger: ATACAAGCTTCGTGAGAGCCAGCTACCCAGAATCCA...GGTTCCGTCCTGGCCATTGTCGCAGGATGAGTGACTCCAGAGCTGCAGCCACAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| 3UTR CAA 72 bp | TTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCTTCATaGTTTTCCTGGAGACACTCACACCGAGAAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: FPACGAAVGSSS*FSWRHSHREGV Trigger: GACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CCA 90 bp | CGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGATCCTCCTGCATGCGCTaGCAGTATACCTTGATGGTC | + |
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Preference number: 4 (lower is better) Translates to: RCSCGFLFIVFLETLTPRSSCMR*QYTLMV Trigger: GACCATCAAGGTATACTGCCAGCGCATGCAGGAGGA...TCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | CGGTGCAGCTGTGGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGAATGATCTTCACGACCTaGCCTCGCTTGATCCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: RCSCGFLFIVFLETLTPRMIFTT*PRLIPK Trigger: CTTTGGGATCAAGCGAGGGCAGGTCGTGAAGATCAT...TCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCACAGCTGCACCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR TCA 90 bp | TGGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGAAGGAGTCCACACATGACACAGCTGCATaGTCGTCTTGCGGATCTTCC | + |
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Preference number: 4 (lower is better) Translates to: WVPLHCFPGDTHTEKESTHDTAA*SSCGSS Trigger: GGAAGATCCGCAAGACGATCATGCAGCTGTGTCATG...TGTGGACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR GCA 90 bp | GGGTTCCTCTTCATTGTTTTCCTGGAGACACTCACACCGAGAAGGAGTCCACAGGTGATGTTTTCCTCCTaGATGCGCTGGCAGTATACC | + |
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Preference number: 4 (lower is better) Translates to: GFLFIVFLETLTPRRSPQVMFSS*MRWQYT Trigger: GGTATACTGCCAGCGCATGCAGGAGGAAAACATCAC...CTGTGGACTCCTTCTCGGTGTGAGTGTCTCCAGGAAAACAATGAAGAGGAACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CAA 90 bp | TGTGCAGAGCAGTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCCACCAGGGACTGCTaGGCGGAGGGCGTCATGCCC | + |
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Preference number: 5 (lower is better) Translates to: CAEQWALGFPACGAAVGSSTRDC*AEGVMP Trigger: GGGCATGACGCCCTCCGCCAAGCAGTCCCTGGTGGA...GGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCACTGCTCTGCACA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CAA 90 bp | GGGGTGTGGCTGCAGCTCTGGAGTCACTCATCCTGCGACAATGGCCAGGACGGAAGCTGCATGATCGTCTaGCGGATCTTCCACAGCCGG | + |
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Preference number: 5 (lower is better) Translates to: GVWLQLWSHSSCDNGQDGSCMIV*RIFHSR Trigger: CCGGCTGTGGAAGATCCGCAAGACGATCATGCAGCT...TCCGTCCTGGCCATTGTCGCAGGATGAGTGACTCCAGAGCTGCAGCCACACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CAA 90 bp | CAGGCTGTGGCCCACAGCTGTCAGGGTGCTGTGCAGAGCAGTGGGCTCTGGGTTTCGTGCTCTGTGATATaGATGAGCAGCTCCTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: QAVAHSCQGAVQSSGLWVSCSVI*MSSSCC Trigger: ACAGCAGGAGCTGCTCATCAATATCACAGAGCACGA...AACCCAGAGCCCACTGCTCTGCACAGCACCCTGACAGCTGTGGGCCACAGCCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS-3UTR CAA 90 bp | GTGGGCTCTGGGTTTCCCTGCATGCGGTGCAGCTGTGGGTTCCTCTTCATTGTTACGACCTGCCCTCGCTaGATCCCAAAGTACCGTGCC | + |
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Preference number: 5 (lower is better) Translates to: VGSGFPCMRCSCGFLFIVTTCPR*IPKYRA Trigger: GGCACGGTACTTTGGGATCAAGCGAGGGCAGGTCGT...AACAATGAAGAGGAACCCACAGCTGCACCGCATGCAGGGAAACCCAGAGCCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS CCA 72 bp | CGTGCCACTGGGTCCCCGGCCTGGATTCTGGGTAGCTaGCTCTCACGAAGCTTGTATCGAGCCAGCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: RATGSPAWILGS*LSRSLYRASSS Trigger: TGAACTGCTGGCTCGATACAAGCTTCGTGAGAGCCAGCTACCCAGAATCCAGGCCGGGGACCCAGTGGCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS CCA 72 bp | CAAAGTACCGTGCCACTGGGTCCCCGGCCTGGATTCTaGGTAGCTGGCTCTCACGAAGCTTGTATCGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: QSTVPLGPRPGF*VAGSHEACIEP Trigger: TGGCTCGATACAAGCTTCGTGAGAGCCAGCTACCCAGAATCCAGGCCGGGGACCCAGTGGCACGGTACTTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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| CDS GCA 72 bp | TGCACCACAATCAGCGCCCGTGTGATGTTTTCCTCCTaGATGCGCTGGCAGTATACCTTGATGGTCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: CTTISARVMFSS*MRWQYTLMVLM Trigger: CATCAAGACCATCAAGGTATACTGCCAGCGCATGCAGGAGGAAAACATCACACGGGCGCTGATTGTGGTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004786.10 |
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