Pregenerated sensors for POLR2D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024258Ensembl transcript IDs: ENSMUST00000025106.5, ENSMUST00000234146.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAATGTTTGAACATCATTCTACCTCAGCAGTTCAGGATGGCAGCCTaGCTGACCACAGCAGCCTTAAAAGGCTGCAAGGAGCGCAGATGG | + |
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Preference number: 1 (lower is better) Translates to: ECLNIILPQQFRMAA*LTTAALKGCKERRW Trigger: CCATCTGCGCTCCTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTGCTGAGGTAGAATGATGTTCAAACATTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| 3UTR-3UTR TCA 90 bp | GAATGTTTGAACATCATTCTACCTCAGCAGTTCAGGATGGCAGCCTGCCTGACCCAGCACCTGCGAGGCTaGGGCAGGAGGACTGTTATG | + |
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Preference number: 2 (lower is better) Translates to: ECLNIILPQQFRMAACLTQHLRG*GRRTVM Trigger: CATAACAGTCCTCCTGCCTCAGCCTCGCAGGTGCTG...GGTCAGGCAGGCTGCCATCCTGAACTGCTGAGGTAGAATGATGTTCAAACATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| 3UTR-3UTR CCA 90 bp | ATTCTACCTCAGCAGTTCAGGATGGCAGCCTGCCTGACCACAGCAGCCTTAAAACCAGGCTTCAGACCGTaGTGCTGTAACTCAAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: ILPQQFRMAACLTTAALKPGFRP*CCNSRS Trigger: GCTCCTTGAGTTACAGCACCACGGTCTGAAGCCTGG...TTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTGCTGAGGTAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| 3UTR-3UTR TCA 90 bp | TATGGTCTAACAGTCACTGTGAAGATAGCACCTACAGCATCAATAGCCAGCCTTAGCAATGTTCCTGCATaGGGCCTCCCCAGGCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: YGLTVTVKIAPTASIASLSNVPA*GLPRLQ Trigger: CTGAAGCCTGGGGAGGCCTCATGCAGGAACATTGCT...AAGGCTGGCTATTGATGCTGTAGGTGCTATCTTCACAGTGACTGTTAGACCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| 3UTR CCA 72 bp | ATGTTCCTGCATGAGGCCTCCCCAGGCTTCAGACCGTaGTGCTGTAACTCAAGGAGCAGAGTGACGTCTGCG | + |
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Preference number: 3 (lower is better) Translates to: MFLHEASPGFRP*CCNSRSRVTSA Trigger: CGCAGACGTCACTCTGCTCCTTGAGTTACAGCACCACGGTCTGAAGCCTGGGGAGGCCTCATGCAGGAACAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| 3UTR GCA 72 bp | CGAAAGAAGCTCCAGCGTCTTCTGAAGCAATGTTCCTaGATGAGGCCTCCCCAGGCTTCAGACCGTGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: RKKLQRLLKQCS*MRPPQASDRGA Trigger: AGCACCACGGTCTGAAGCCTGGGGAGGCCTCATGCAGGAACATTGCTTCAGAAGACGCTGGAGCTTCTTTCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| 3UTR GCA 72 bp | AACATCATTCTACCTCAGCAGTTCAGGATGGCAGCCTaGCTGACCACAGCAGCCTTAAAAGGCTGCAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: NIILPQQFRMAA*LTTAALKGCKE Trigger: CTCCTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTGCTGAGGTAGAATGATGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS-3UTR GCA 90 bp | TGCATGAGGCCTCCCCAGGCTTCAGACCGTGGTGCTGTAACTCAAGGAGCAGAGAACGCCCTTCCAGGCTaGGCACACTGGCAATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: CMRPPQASDRGAVTQGAENALPG*AHWQWS Trigger: AGACCATTGCCAGTGTGCGCAGCCTGGAAGGGCGTT...CTCTGCTCCTTGAGTTACAGCACCACGGTCTGAAGCCTGGGGAGGCCTCATGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000234146.2 |
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| CDS-3UTR CCA 90 bp | CGTCTTCTGAAGCAATGTTCCTGCATGAGGCCTCCCCAGGCTTCAGACCGTGGTACGCCCTTCCAGGCTTaGAATCAGAGCTTTGGACTC | + |
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Preference number: 4 (lower is better) Translates to: RLLKQCSCMRPPQASDRGTPFQA*NQSFGL Trigger: GAGTCCAAAGCTCTGATTCCAAGCCTGGAAGGGCGT...ACCACGGTCTGAAGCCTGGGGAGGCCTCATGCAGGAACATTGCTTCAGAAGACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS-3UTR CCA 90 bp | CAGCAGTTCAGGATGGCAGCCTGCCTGACCACAGCAGCCTTAAAAGGCTGCAAGTGCTCCAGAAGCATGTaGACTTCCGAGTTCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QQFRMAACLTTAALKGCKCSRSM*TSEFSR Trigger: TCTGCTGAACTCGGAAGTCCACATGCTTCTGGAGCA...CTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CCA 90 bp | GCCAGCCTTTCTTTCCTCTCCAGAAGCCAAGCTGAAAGTGTTGGCTCACACCTGCCAGGCTGCGCACACTaGCAATGGTCTCTCTGTTTT | + |
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Preference number: 4 (lower is better) Translates to: ASLSFLSRSQAESVGSHLPGCAH*QWSLCF Trigger: AAAACAGAGAGACCATTGCCAGTGTGCGCAGCCTGG...CAGGTGTGAGCCAACACTTTCAGCTTGGCTTCTGGAGAGGAAAGAAAGGCTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234146.2 |
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| CDS-3UTR CCA 90 bp | CTCCAGCGTCTTCTGAAGCAATGTTCCTGCATGAGGCCTCCCCAGGCTTCAGACTTGGGAAAGATAAGCTaGGAAGCGTCTTCTTCTACG | + |
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Preference number: 4 (lower is better) Translates to: LQRLLKQCSCMRPPQASDLGKIS*EASSST Trigger: CGTAGAAGAAGACGCTTCCCAGCTTATCTTTCCCAA...GTCTGAAGCCTGGGGAGGCCTCATGCAGGAACATTGCTTCAGAAGACGCTGGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CCA 90 bp | CAGTTCAGGATGGCAGCCTGCCTGACCACAGCAGCCTTAAAAGGCTGCAAGGAGTTGGGAAAGATAAGCTaGGAAGCGTCTTCTTCTACG | + |
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Preference number: 4 (lower is better) Translates to: QFRMAACLTTAALKGCKELGKIS*EASSST Trigger: CGTAGAAGAAGACGCTTCCCAGCTTATCTTTCCCAA...CTCCTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CCA 90 bp | GCCAGCCTTTCTTTCCTCTCCAGAAGCCAAGCTGAAAGTGTTGGCTCACACCTGTGCTCCAGAAGCATGTaGACTTCCGAGTTCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ASLSFLSRSQAESVGSHLCSRSM*TSEFSR Trigger: TCTGCTGAACTCGGAAGTCCACATGCTTCTGGAGCA...CAGGTGTGAGCCAACACTTTCAGCTTGGCTTCTGGAGAGGAAAGAAAGGCTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CCA 90 bp | CTGCATGAGGCCTCCCCAGGCTTCAGACCGTGGTGCTGTAACTCAAGGAGCAGATTATGTAACTTTTTCTaGAGAAGCAAGCTGCGCACA | + |
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Preference number: 4 (lower is better) Translates to: LHEASPGFRPWCCNSRSRLCNFF*RSKLRT Trigger: TGTGCGCAGCTTGCTTCTCCAGAAAAAGTTACATAA...TCTGCTCCTTGAGTTACAGCACCACGGTCTGAAGCCTGGGGAGGCCTCATGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS-3UTR GCA 90 bp | GTAGTCAACGAATGTTTGAACATCATTCTACCTCAGCAGTTCAGGATGGCAGCCTCTGGAGAAGCAAGCTaGGCACACTGGCAATGGTCT | + |
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Preference number: 4 (lower is better) Translates to: VVNECLNIILPQQFRMAASGEAS*AHWQWS Trigger: AGACCATTGCCAGTGTGCGCAGCTTGCTTCTCCAGA...GGCTGCCATCCTGAACTGCTGAGGTAGAATGATGTTCAAACATTCGTTGACTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS-3UTR CCA 90 bp | GAATGTTTGAACATCATTCTACCTCAGCAGTTCAGGATGGCAGCCTGCCTGACCTCTCCGGGCAAAGATTaGCTAAACAGGCCAACTCAA | + |
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Preference number: 4 (lower is better) Translates to: ECLNIILPQQFRMAACLTSPGKD*LNRPTQ Trigger: TTGAGTTGGCCTGTTTAGCCAATCTTTGCCCGGAGA...GGTCAGGCAGGCTGCCATCCTGAACTGCTGAGGTAGAATGATGTTCAAACATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS-3UTR CAA 90 bp | GAGGCCTCCCCAGGCTTCAGACCGTGGTGCTGTAACTCAAGGAGCAGAGTGACGATGGTCTCTCTGTTTTaGAACCGGCTGAAGCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: EASPGFRPWCCNSRSRVTMVSLF*NRLKRA Trigger: GGCCCGCTTCAGCCGGTTCAAAAACAGAGAGACCAT...CGTCACTCTGCTCCTTGAGTTACAGCACCACGGTCTGAAGCCTGGGGAGGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CAA 90 bp | CTCCAGCGTCTTCTGAAGCAATGTTCCTGCATGAGGCCTCCCCAGGCTTCAGACATGGTCTCTCTGTTTTaGAACCGGCTGAAGCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: LQRLLKQCSCMRPPQASDMVSLF*NRLKRA Trigger: GGCCCGCTTCAGCCGGTTCAAAAACAGAGAGACCAT...GTCTGAAGCCTGGGGAGGCCTCATGCAGGAACATTGCTTCAGAAGACGCTGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CAA 90 bp | CAGCAGTTCAGGATGGCAGCCTGCCTGACCACAGCAGCCTTAAAAGGCTGCAAGAACGCCCTTCCAGGCTaGGAATCAGAGCTTTGGACT | + |
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Preference number: 5 (lower is better) Translates to: QQFRMAACLTTAALKGCKNALPG*ESELWT Trigger: AGTCCAAAGCTCTGATTCCAAGCCTGGAAGGGCGTT...CTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTGCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS-3UTR CAA 90 bp | TTCAGGATGGCAGCCTGCCTGACCACAGCAGCCTTAAAAGGCTGCAAGGAGCGCGCTGTCTCAAACTCTTaGGGAAAGATAAGCTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: FRMAACLTTAALKGCKERAVSNS*GKISWE Trigger: TTCCCAGCTTATCTTTCCCAAAGAGTTTGAGACAGC...GCGCTCCTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CAA 90 bp | CAGCAGTTCAGGATGGCAGCCTGCCTGACCACAGCAGCCTTAAAAGGCTGCAAGGCTGTCTCAAACTCTTaGGGAAAGATAAGCTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: QQFRMAACLTTAALKGCKAVSNS*GKISWE Trigger: TTCCCAGCTTATCTTTCCCAAAGAGTTTGAGACAGC...CTTGCAGCCTTTTAAGGCTGCTGTGGTCAGGCAGGCTGCCATCCTGAACTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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| CDS-3UTR CAA 90 bp | TATGGTCTAACAGTCACTGTGAAGATAGCACCTACAGCATCAATAGCCAGCCTTGTCTCCGGGCAAAGATaGGCTAAACAGGCCAACTCA | + |
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Preference number: 5 (lower is better) Translates to: YGLTVTVKIAPTASIASLVSGQR*AKQANS Trigger: TGAGTTGGCCTGTTTAGCCAATCTTTGCCCGGAGAC...AAGGCTGGCTATTGATGCTGTAGGTGCTATCTTCACAGTGACTGTTAGACCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025106.5 |
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| CDS CAA 72 bp | TCCGAGTTCAGCAGAGTCTCCGCTGTCTCAAACTCTTaGGGAAAGATAAGCTGGGAAGCGTCTTCTTCTACG | + |
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Preference number: 6 (lower is better) Translates to: SEFSRVSAVSNS*GKISWEASSST Trigger: CGTAGAAGAAGACGCTTCCCAGCTTATCTTTCCCAAAGAGTTTGAGACAGCGGAGACTCTGCTGAACTCGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025106.5 ENSMUST00000234146.2 |
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