Pregenerated sensors for POLR1H (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036315Ensembl transcript IDs: ENSMUST00000113669.9, ENSMUST00000172518.8, ENSMUST00000172823.2
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AAGGGAAAGGAGTATTCTGGGTCGACGATCTTATTCTaGGAACAAAGCATGGTAGCCGGAGGGGACCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: KGKEYSGSTILF*EQSMVAGGDQG Trigger: TCCTTGGTCCCCTCCGGCTACCATGCTTTGTTCTCAGAATAAGATCGTCGACCCAGAATACTCCTTTCCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| 3UTR CCA 72 bp | ATAACTTTAGTAAATTCAAAAGGGAAAGGAGTATTCTaGGTCGACGATCTTATTCTGAGAACAAAGCATGGT | + |
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Preference number: 3 (lower is better) Translates to: ITLVNSKGKGVF*VDDLILRTKHG Trigger: ACCATGCTTTGTTCTCAGAATAAGATCGTCGACCCAGAATACTCCTTTCCCTTTTGAATTTACTAAAGTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS-3UTR TCA 90 bp | GTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCCGAGAGTATGCCATTCCCTCGTaGCCACATCGAGGGCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: VAGGDQGGIKDEYLHFREYAIPS*PHRGQR Trigger: GCGCTGCCCTCGATGTGGTCACGAGGGAATGGCATA...CTCTCGGAAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR CCA 90 bp | GTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCCGAGAGAGTCTGATTGAAAGTTaGAGCGGGGGCGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: VAGGDQGGIKDEYLHFRESLIES*SGGGPA Trigger: AGCTGGCCCGCCCCCGCTCCAACTTTCAATCAGACT...CTCTCGGAAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR CCA 90 bp | CCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCCGAGAGAAGGAGTCTGATTGAAAGTTaGAGCGGGGGCGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: PEGTKEASKTSIFTSERRSLIES*SGGGPA Trigger: AGCTGGCCCGCCCCCGCTCCAACTTTCAATCAGACT...CCTTCTCTCGGAAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR TCA 90 bp | AGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCCGAGAGAAGGAAAGTATGCCATTCCCTCGTaGCCACATCGAGGGCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: RGPRRHQRRVSSLPREGKYAIPS*PHRGQR Trigger: GCGCTGCCCTCGATGTGGTCACGAGGGAATGGCATA...CTTTCCTTCTCTCGGAAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR CCA 90 bp | CTTATTCTGAGAACAAAGCATGGTAGCCGGAGGGGACCAAGGAGGCATCAAAGAAGTCTGATTGAAAGTTaGAGCGGGGGCGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LILRTKHGSRRGPRRHQRSLIES*SGGGPA Trigger: AGCTGGCCCGCCCCCGCTCCAACTTTCAATCAGACT...TCTTTGATGCCTCCTTGGTCCCCTCCGGCTACCATGCTTTGTTCTCAGAATAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR TCA 90 bp | GCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCCGAGAGAAGCACAACGCGAACATATaGCAGTGTCCTGAATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: AGGDQGGIKDEYLHFREKHNANI*QCPEFQ Trigger: CTGGAATTCAGGACACTGTCATATGTTCGCGTTGTG...CTTCTCTCGGAAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR TCA 90 bp | ATGGTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCCGACACAACGCGAACATATaGCAGTGTCCTGAATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: MVAGGDQGGIKDEYLHFRHNANI*QCPEFQ Trigger: CTGGAATTCAGGACACTGTCATATGTTCGCGTTGTG...TCGGAAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR CCA 90 bp | GAACAAAGCATGGTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTAATCTCGCACATCGATaGAGAAGCCACAACGCGAAC | + |
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Preference number: 4 (lower is better) Translates to: EQSMVAGGDQGGIKDEYLNLAHR*RSHNAN Trigger: GTTCGCGTTGTGGCTTCTCCATCGATGTGCGAGATT...AAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTACCATGCTTTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR TCA 90 bp | AAGCATGGTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCACTTCACAACGCGAACATATaGCAGTGTCCTGAATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KHGSRRGPRRHQRRVSSLHNANI*QCPEFQ Trigger: CTGGAATTCAGGACACTGTCATATGTTCGCGTTGTG...AAGTGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTACCATGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR TCA 90 bp | CTGAGAACAAAGCATGGTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTAGAATCTTCCTTTTCCTaGAACTTGCAGTTGATACAG | + |
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Preference number: 4 (lower is better) Translates to: LRTKHGSRRGPRRHQRRVESSFS*NLQLIQ Trigger: CTGTATCAACTGCAAGTTTCAGGAAAAGGAAGATTC...TACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTACCATGCTTTGTTCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR TCA 90 bp | ACAAAGCATGGTAGCCGGAGGGGACCAAGGAGGCATCAAAGACGAGTATCTTCAGAATCTTCCTTTTCCTaGAACTTGCAGTTGATACAG | + |
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Preference number: 4 (lower is better) Translates to: TKHGSRRGPRRHQRRVSSESSFS*NLQLIQ Trigger: CTGTATCAACTGCAAGTTTCAGGAAAAGGAAGATTC...TGAAGATACTCGTCTTTGATGCCTCCTTGGTCCCCTCCGGCTACCATGCTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS-3UTR CCA 90 bp | TCAAAAGGGAAAGGAGTATTCTGGGTCGACGATCTTATTCTGAGAACAAAGCATAATCTCGCACATCGATaGAGAAGCCACAACGCGAAC | + |
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Preference number: 4 (lower is better) Translates to: SKGKGVFWVDDLILRTKHNLAHR*RSHNAN Trigger: GTTCGCGTTGTGGCTTCTCCATCGATGTGCGAGATT...ATGCTTTGTTCTCAGAATAAGATCGTCGACCCAGAATACTCCTTTCCCTTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS-3UTR CAA 90 bp | GATCTTATTCTGAGAACAAAGCATGGTAGCCGGAGGGGACCAAGGAGGCATCAAGTAGCCCCCAGCTTGTaGAACACTACTGAGGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: DLILRTKHGSRRGPRRHQVAPSL*NTTEVF Trigger: GAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTAC...TTGATGCCTCCTTGGTCCCCTCCGGCTACCATGCTTTGTTCTCAGAATAAGATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS TCA 90 bp | ATCCACAGACAAAGGTATGGTAGCCCCCAGCTTGTTGAACACTACTaGGGTCTTCACAACCTTCCCTTCACAATCTCGCACATCGATGGA | + |
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Preference number: 5 (lower is better) Translates to: IHRQRYGSPQLVEHY*GLHNLPFTISHIDG Trigger: TCCATCGATGTGCGAGATTGTGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS TCA 72 bp | CTCGCACATCGATGGAGAAGCCACAACGCGAACATATaGCAGTGTCCTGAATTCCAGGCAGCGGCAGGACTG | + |
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Preference number: 6 (lower is better) Translates to: LAHRWRSHNANI*QCPEFQAAAGL Trigger: CAGTCCTGCCGCTGCCTGGAATTCAGGACACTGTCATATGTTCGCGTTGTGGCTTCTCCATCGATGTGCGAG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 ENSMUST00000172823.2 |
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| CDS CAA 90 bp | TCAGGTCCCTCATCCACAGACAAAGGTATGGTAGCCCCCAGCTTGTaGAACACTACTGAGGTCTTCACAACCTTCCCTTCACAATCTCGC | + |
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Preference number: 6 (lower is better) Translates to: SGPSSTDKGMVAPSL*NTTEVFTTFPSQSR Trigger: GCGAGATTGTGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGATGAGGGACCTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS CAA 72 bp | CCCTCATCCACAGACAAAGGTATGGTAGCCCCCAGCTaGTTGAACACTACTGAGGTCTTCACAACCTTCCCT | + |
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Preference number: 6 (lower is better) Translates to: PSSTDKGMVAPS*LNTTEVFTTFP Trigger: AGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGATGAGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS TCA 72 bp | CAAAGGTATGGTAGCCCCCAGCTTGTTGAACACTACTaGGGTCTTCACAACCTTCCCTTCACAATCTCGCAC | + |
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Preference number: 6 (lower is better) Translates to: QRYGSPQLVEHY*GLHNLPFTISH Trigger: GTGCGAGATTGTGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS CAA 72 bp | TCATCCACAGACAAAGGTATGGTAGCCCCCAGCTTGTaGAACACTACTGAGGTCTTCACAACCTTCCCTTCA | + |
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Preference number: 6 (lower is better) Translates to: SSTDKGMVAPSL*NTTEVFTTFPS Trigger: TGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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| CDS CAA 90 bp | AATTCAGGTCCCTCATCCACAGACAAAGGTATGGTAGCCCCCAGCTaGTTGAACACTACTGAGGTCTTCACAACCTTCCCTTCACAATCT | + |
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Preference number: 6 (lower is better) Translates to: NSGPSSTDKGMVAPS*LNTTEVFTTFPSQS Trigger: AGATTGTGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGATGAGGGACCTGAATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000113669.9 ENSMUST00000172518.8 |
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