Pregenerated sensors for POLR1F (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020561Ensembl transcript IDs: ENSMUST00000020877.9
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCTCCCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTaGTTTATAGCAGTTATCCTGTACTTTATGGCTAAAATCCACTTG | + |
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Preference number: 1 (lower is better) Translates to: VSPLGPPCCLASLGL*FIAVILYFMAKIHL Trigger: CAAGTGGATTTTAGCCATAAAGTACAGGATAACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGGGAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CCA 90 bp | AAATTAACAGTCTCAGAATTCAAGAACACATGCACATACCCCCTGTaGGAGGGAACAATGAGTTTTCTGCCCATCATACATTCAACAGAT | + |
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Preference number: 1 (lower is better) Translates to: KLTVSEFKNTCTYPL*EGTMSFLPIIHSTD Trigger: ATCTGTTGAATGTATGATGGGCAGAAAACTCATTGTTCCCTCCCACAGGGGGTATGTGCATGTGTTCTTGAATTCTGAGACTGTTAATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR GCA 90 bp | ATGTACAATTCCTTGATGTCTAAGGATGTTAAACATTCCTTTAAGTaGTTCTCCACCATTAGAGATTCCTGCCAAGAATTTTGTTCAGGT | + |
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Preference number: 1 (lower is better) Translates to: MYNSLMSKDVKHSFK*FSTIRDSCQEFCSG Trigger: ACCTGAACAAAATTCTTGGCAGGAATCTCTAATGGTGGAGAAGCACTTAAAGGAATGTTTAACATCCTTAGACATCAAGGAATTGTACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR TCA 90 bp | CCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTGGTTTATAGCAGTTGCTGTGAACACAGTTaGGCAAGTGTCTTTGTGGGA | + |
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Preference number: 2 (lower is better) Translates to: PLGPSMLFSFFGSVVYSSCCEHS*ASVFVG Trigger: TCCCACAAAGACACTTGCTCAACTGTGTTCACAGCA...ACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR GCA 90 bp | CCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTGGTTTATAGCAGTGTGTTTCTCCCATGTTaGCTCATGGAGGAAGGAACT | + |
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Preference number: 2 (lower is better) Translates to: PLGPSMLFSFFGSVVYSSVFLPC*LMEEGT Trigger: AGTTCCTTCCTCCATGAGGCAACATGGGAGAAACAC...ACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR CCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGTTTCCTCCTGTCTGTTaGCCAGGGACAGCTCTTAGC | + |
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Preference number: 2 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLFPPVC*PGTALS Trigger: GCTAAGAGCTGTCCCTGGCCAACAGACAGGAGGAAA...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR TCA 90 bp | CCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTGGTTTATAGCAGTCTATTCCCAGTGTCCTaGGAAACCACCAAATTTACT | + |
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Preference number: 2 (lower is better) Translates to: PLGPSMLFSFFGSVVYSSLFPVS*ETTKFT Trigger: AGTAAATTTGGTGGTTTCTCAGGACACTGGGAATAG...ACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR TCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGCAAAGTGTTCTGCTTTaGTTCACCTGCCACTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLQSVLL*FTCHFQ Trigger: CTGGAAGTGGCAGGTGAATCAAAGCAGAACACTTTG...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 90 bp | GTCCTGAGAAACCACCAAATTTACTTCCAAAGCAGTTGTACAAGCTaGGACTCCCACCAGCAATGGAGTGTTCCCCTGGATCCATATCTT | + |
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Preference number: 2 (lower is better) Translates to: VLRNHQIYFQSSCTS*DSHQQWSVPLDPYL Trigger: AAGATATGGATCCAGGGGAACACTCCATTGCTGGTGGGAGTCCAAGCTTGTACAACTGCTTTGGAAGTAAATTTGGTGGTTTCTCAGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 90 bp | GCTATTATGAACAAAGCTGCTGTGAACACAGTTGAGCAAGTGTCTTaGTGGGATGGTAGAGGTTCTTTTGGGTATTTGCCCCAGAGCTGT | + |
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Preference number: 2 (lower is better) Translates to: AIMNKAAVNTVEQVS*WDGRGSFGYLPQSC Trigger: ACAGCTCTGGGGCAAATACCCAAAAGAACCTCTACCATCCCACAAAGACACTTGCTCAACTGTGTTCACAGCAGCTTTGTTCATAATAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR TCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGAAATCCACTTGCAAGTaGGCTTGTACCATGTTTGTG | + |
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Preference number: 2 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLKSTCK*ACTMFV Trigger: CACAAACATGGTACAAGCTCACTTGCAAGTGGATTT...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR CCA 90 bp | CCTACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGGCTTCTTTGGGTCTGTaGTTTATAGCAGTTATCCTG | + |
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Preference number: 2 (lower is better) Translates to: PTVTAIQHLSPQHSQTEKASLGL*FIAVIL Trigger: CAGGATAACTGCTATAAACCACAGACCCAAAGAAGC...CTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 90 bp | GCAGTTATCCTGTACTTTATGGCTAAAATCCACTTGCAAGTGAGCTaGTACCATGTTTGTGTTTCTGGGTCTGGGTTACAGCATGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: AVILYFMAKIHLQVS*YHVCVSGSGLQHAG Trigger: TCCTGCATGCTGTAACCCAGACCCAGAAACACAAACATGGTACAAGCTCACTTGCAAGTGGATTTTAGCCATAAAGTACAGGATAACTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR GCA 90 bp | TACTGTTTTATTTCCTCACTTAGGCTGTGTGCACACAAGTGTTTCTCCCATGTTGAATTCAAGAACACATaGACATACCCCCTGTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: YCFISSLRLCAHKCFSHVEFKNT*TYPLWE Trigger: CTCCCACAGGGGGTATGTGCATGTGTTCTTGAATTC...AACATGGGAGAAACACTTGTGTGCACACAGCCTAAGTGAGGAAATAAAACAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR GCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGTCTCAATTCTTCTTTTaGCACAAGGTGCAGATAACT | + |
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Preference number: 2 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLSQFFF*HKVQIT Trigger: AGTTATCTGCACCTTGTGGCAAAAGAAGAATTGAGA...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR GCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGTTTTCTAGTTCTATTTaGCGGCAAATTTCATGGTGT | + |
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Preference number: 2 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLFSSSI*RQISWC Trigger: ACACCATGAAATTTGCCGGCAAATAGAACTAGAAAA...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR GCA 90 bp | TTCTGCTTTGATTCACCTGCCACTTCCAGAACTCAGTTCTTTGCAGATGTAAGAGTCTGGGTTACAGCATaGAGGATGATCTTTTCTAGT | + |
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Preference number: 2 (lower is better) Translates to: FCFDSPATSRTQFFADVRVWVTA*RMIFSS Trigger: ACTAGAAAAGATCATCCTGCATGCTGTAACCCAGAC...TCTTACATCTGCAAAGAACTGAGTTCTGGAAGTGGCAGGTGAATCAAAGCAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR CCA 90 bp | CCTACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGTTATCCTGTACTTTATaGCTAAAATCCACTTGCAAG | + |
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Preference number: 2 (lower is better) Translates to: PTVTAIQHLSPQHSQTEKLSCTL*LKSTCK Trigger: CTTGCAAGTGGATTTTAGCCATAAAGTACAGGATAA...CTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 90 bp | ATGAACCATATTTCCTTTATGTATTCTTCGGTGGAAGGATATGGGTaGTTCCCAGTGTGTGGCTATTATGAACAAAGCTGCTGTGAACAC | + |
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Preference number: 2 (lower is better) Translates to: MNHISFMYSSVEGYG*FPVCGYYEQSCCEH Trigger: GTGTTCACAGCAGCTTTGTTCATAATAGCCACACACTGGGAACAACCCATATCCTTCCACCGAAGAATACATAAAGGAAATATGGTTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 90 bp | CTGTGGTTTATAGCAGTTATCCTGTACTTTATGGCTAAAATCCACTaGCAAGTGAGCTTGTACCATGTTTGTGTTTCTGGGTCTGGGTTA | + |
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Preference number: 2 (lower is better) Translates to: LWFIAVILYFMAKIH*QVSLYHVCVSGSGL Trigger: TAACCCAGACCCAGAAACACAAACATGGTACAAGCTCACTTGCAAGTGGATTTTAGCCATAAAGTACAGGATAACTGCTATAAACCACAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR GCA 90 bp | TTCTGCTTTGATTCACCTGCCACTTCCAGAACTCAGTTCTTTGCAGATGTAAGAGTCAAGAAACATGGTTaGCAGAATTTACTCCTTATG | + |
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Preference number: 2 (lower is better) Translates to: FCFDSPATSRTQFFADVRVKKHG*QNLLLM Trigger: CATAAGGAGTAAATTCTGGCAACCATGTTTCTTGAC...TCTTACATCTGCAAAGAACTGAGTTCTGGAAGTGGCAGGTGAATCAAAGCAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 90 bp | GTGGGTATAATATGGAATTTCAGAGTTGTTTTGATGTACAATTCCTaGATGTCTAAGGATGTTAAACATTCCTTTAAGTGCTTCTCCACC | + |
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Preference number: 2 (lower is better) Translates to: VGIIWNFRVVLMYNS*MSKDVKHSFKCFST Trigger: GGTGGAGAAGCACTTAAAGGAATGTTTAACATCCTTAGACATCAAGGAATTGTACATCAAAACAACTCTGAAATTCCATATTATACCCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR CAA 90 bp | CCCTTCTTAATGAGATTCAAGCGTCTCCCCCTTGGGCCCTCCATGCTGTTTAGCGGTTCTTTTGGGTATTaGCCCCAGAGCTGTGACTTG | + |
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Preference number: 3 (lower is better) Translates to: PFLMRFKRLPLGPSMLFSGSFGY*PQSCDL Trigger: CAAGTCACAGCTCTGGGGCAAATACCCAAAAGAACC...GCTAAACAGCATGGAGGGCCCAAGGGGGAGACGCTTGAATCTCATTAAGAAGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR CAA 90 bp | CCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTGGTTTATAGCAGTAGTGTTTCTCCCATGTaGCCTCATGGAGGAAGGAAC | + |
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Preference number: 3 (lower is better) Translates to: PLGPSMLFSFFGSVVYSSSVSPM*PHGGRN Trigger: GTTCCTTCCTCCATGAGGCAACATGGGAGAAACACT...ACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR TCA 72 bp | ACACTATGTCTGCTAGTCAGTGACAACAGCAGTGACTaGCACGGGAAGGCCAACCCTAACCCTGTACATTTC | + |
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Preference number: 3 (lower is better) Translates to: TLCLLVSDNSSD*HGKANPNPVHF Trigger: GAAATGTACAGGGTTAGGGTTGGCCTTCCCGTGTCAGTCACTGCTGTTGTCACTGACTAGCAGACATAGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR TCA 72 bp | GAGGTTCTTTTGGGTATTTGCCCCAGAGCTGTGACTTaGGGTGGATCTATTCCCAGTGTCCTGAGAAACCAC | + |
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Preference number: 3 (lower is better) Translates to: EVLLGICPRAVT*GGSIPSVLRNH Trigger: GTGGTTTCTCAGGACACTGGGAATAGATCCACCTCAAGTCACAGCTCTGGGGCAAATACCCAAAAGAACCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CCA 72 bp | CCCAGCAATTATGGGAGTATGGAGACAGAAGATACGTaGGGCTCATTAGCCAGACTGCCTAGTGAATCTGTG | + |
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Preference number: 3 (lower is better) Translates to: PSNYGSMETEDT*GSLARLPSESV Trigger: CACAGATTCACTAGGCAGTCTGGCTAATGAGCCCCACGTATCTTCTGTCTCCATACTCCCATAATTGCTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CCA 72 bp | ACCACCAAATTTACTTCCAAAGCAGTTGTACAAGCTTaGACTCCCACCAGCAATGGAGTGTTCCCCTGGATC | + |
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Preference number: 3 (lower is better) Translates to: TTKFTSKAVVQA*TPTSNGVFPWI Trigger: GATCCAGGGGAACACTCCATTGCTGGTGGGAGTCCAAGCTTGTACAACTGCTTTGGAAGTAAATTTGGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR TCA 72 bp | AGAACACATGCACATACCCCCTGTGGGAGGGAACAATaGGTTTTCTGCCCATCATACATTCAACAGATAGCC | + |
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Preference number: 3 (lower is better) Translates to: RTHAHTPCGREQ*VFCPSYIQQIA Trigger: GGCTATCTGTTGAATGTATGATGGGCAGAAAACTCATTGTTCCCTCCCACAGGGGGTATGTGCATGTGTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR-3UTR CAA 90 bp | CCTACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGATGGCTAAAATCCACTaGCAAGTGAGCTTGTACCAT | + |
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Preference number: 3 (lower is better) Translates to: PTVTAIQHLSPQHSQTEKMAKIH*QVSLYH Trigger: ATGGTACAAGCTCACTTGCAAGTGGATTTTAGCCAT...CTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CCA 72 bp | CCACTTGCAAGTGAGCTTGTACCATGTTTGTGTTTCTaGGTCTGGGTTACAGCATGCAGGATGATCTTTTCT | + |
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Preference number: 3 (lower is better) Translates to: PLASELVPCLCF*VWVTACRMIFS Trigger: AGAAAAGATCATCCTGCATGCTGTAACCCAGACCCAGAAACACAAACATGGTACAAGCTCACTTGCAAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR GCA 72 bp | GTACCATGTTTGTGTTTCTGGGTCTGGGTTACAGCATaGAGGATGATCTTTTCTAGTTCTATTTGCCGGCAA | + |
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Preference number: 3 (lower is better) Translates to: VPCLCFWVWVTA*RMIFSSSICRQ Trigger: TTGCCGGCAAATAGAACTAGAAAAGATCATCCTGCATGCTGTAACCCAGACCCAGAAACACAAACATGGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR TCA 72 bp | TTATCCTGTACTTTATGGCTAAAATCCACTTGCAAGTaGGCTTGTACCATGTTTGTGTTTCTGGGTCTGGGT | + |
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Preference number: 3 (lower is better) Translates to: LSCTLWLKSTCK*ACTMFVFLGLG Trigger: ACCCAGACCCAGAAACACAAACATGGTACAAGCTCACTTGCAAGTGGATTTTAGCCATAAAGTACAGGATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR TCA 72 bp | AAGTCAAGAAACATGGTTGCCAGAATTTACTCCTTATaGAACATTAAGCTGACGACCACACTATGTCTGCTA | + |
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Preference number: 3 (lower is better) Translates to: KSRNMVARIYSL*NIKLTTTLCLL Trigger: TAGCAGACATAGTGTGGTCGTCAGCTTAATGTTTCATAAGGAGTAAATTCTGGCAACCATGTTTCTTGACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR TCA 72 bp | AATTGCTGTCATTCCTTATGCTCTATATACCGTAGATaGAGTCAAGAAACATGGTTGCCAGAATTTACTCCT | + |
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Preference number: 3 (lower is better) Translates to: NCCHSLCSIYRR*SQETWLPEFTP Trigger: AGGAGTAAATTCTGGCAACCATGTTTCTTGACTTCATCTACGGTATATAGAGCATAAGGAATGACAGCAATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | CTTAGGCTGTGTGCACACAAGTGTTTCTCCCATGTTGCCTCATGGAGGAAGGAATGCCCGTGCGCTTCCTaGTCAGGTAGCGGGGCGACA | + |
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Preference number: 4 (lower is better) Translates to: LRLCAHKCFSHVASWRKECPCAS*SGSGAT Trigger: TGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCA...TTCCTTCCTCCATGAGGCAACATGGGAGAAACACTTGTGTGCACACAGCCTAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | TTCTGCTTTGATTCACCTGCCACTTCCAGAACTCAGTTCTTTGCAGATGTAAGAACAGGGCGATGTGCCTaGGGTGCGGGGCAGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: FCFDSPATSRTQFFADVRTGRCA*GAGQPP Trigger: TGGTGGCTGCCCCGCACCGCAGGCACATCGCCCTGT...TCTTACATCTGCAAAGAACTGAGTTCTGGAAGTGGCAGGTGAATCAAAGCAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | CCCTTCTTAATGAGATTCAAGCGTCTCCCCCTTGGGCCCTCCATGCTGTTTAGCGTACCCATTAACGTCTaGCCAGGCTCAGGGCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: PFLMRFKRLPLGPSMLFSVPINV*PGSGQK Trigger: TTTCTGCCCTGAGCCTGGGCAGACGTTAATGGGTAC...GCTAAACAGCATGGAGGGCCCAAGGGGGAGACGCTTGAATCTCATTAAGAAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR CCA 90 bp | CCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTGGTTTATAGCAGTAGCCACTGGAGTCACTaGCTTGGAAAATGGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PLGPSMLFSFFGSVVYSSSHWSH*LGKWGP Trigger: AGGACCCCATTTTCCAAGCCAGTGACTCCAGTGGCT...ACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR CCA 90 bp | CCCTTCTTAATGAGATTCAAGCGTCTCCCCCTTGGGCCCTCCATGCTGTTTAGCGCGTTAAAACATCCATaGACTAGACAGCCAATATGG | + |
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Preference number: 4 (lower is better) Translates to: PFLMRFKRLPLGPSMLFSALKHP*TRQPIW Trigger: CCATATTGGCTGTCTAGTCCATGGATGTTTTAACGC...GCTAAACAGCATGGAGGGCCCAAGGGGGAGACGCTTGAATCTCATTAAGAAGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR CCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGCACTCTGGTAGCCACTaGAGTCACTGGCTTGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLHSGSH*SHWLGK Trigger: TTTTCCAAGCCAGTGACTCCAGTGGCTACCAGAGTG...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | GTGTCTTTGTGGGATGGTAGAGGTTCTTTTGGGTATTaGCCCCAGAGCTGTGACTTGAGGTGGATCTATTCC | + |
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Preference number: 4 (lower is better) Translates to: VSLWDGRGSFGY*PQSCDLRWIYS Trigger: GGAATAGATCCACCTCAAGTCACAGCTCTGGGGCAAATACCCAAAAGAACCTCTACCATCCCACAAAGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | GTCTCCCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTaGGGTCTGTGGTTTATAGCAGTTATCCTGTACTTT | + |
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Preference number: 4 (lower is better) Translates to: VSPLGPPCCLAS*GLWFIAVILYF Trigger: AAAGTACAGGATAACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGGGAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | CCCCTTGGGCCCTCCATGCTGTTTAGCTTCTTTGGGTCTGTGGTTTATAGCAGTTCAGAAACTGCAGAGTaGTTAAGTTGCAAACTGGTG | + |
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Preference number: 4 (lower is better) Translates to: PLGPSMLFSFFGSVVYSSSETAE*LSCKLV Trigger: CACCAGTTTGCAACTTAAGCACTCTGCAGTTTCTGA...ACTGCTATAAACCACAGACCCAAAGAAGCTAAACAGCATGGAGGGCCCAAGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | CCCTTCTTAATGAGATTCAAGCGTCTCCCCCTTGGGCCCTCCATGCTGTTTAGCTTCAACGACAGTTTCTaGTACATCTTCAGAAACTGC | + |
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Preference number: 4 (lower is better) Translates to: PFLMRFKRLPLGPSMLFSFNDSF*YIFRNC Trigger: GCAGTTTCTGAAGATGTAGCAGAAACTGTCGTTGAA...GCTAAACAGCATGGAGGGCCCAAGGGGGAGACGCTTGAATCTCATTAAGAAGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR TCA 90 bp | CCTACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGTCTCTTCTTAGGTaGCTCAAAGTTAGCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: PTVTAIQHLSPQHSQTEKLSLLR*LKVSLF Trigger: GAAGAGGCTAACTTTGAGTCACCTAAGAAGAGACAG...CTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | ACAGTAACAGCTATCCAACACCTCAGTCCCCAGCACTCACAAACAGAAAAGCTGGCAGAGTGCTTAAGTTaGAAACTGGTGGTACTCAGT | + |
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Preference number: 4 (lower is better) Translates to: TVTAIQHLSPQHSQTEKLAECLS*KLVVLS Trigger: ACTGAGTACCACCAGTTTGCAACTTAAGCACTCTGC...CAGCTTTTCTGTTTGTGAGTGCTGGGGACTGAGGTGTTGGATAGCTGTTACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | AACCACCAAATTTACTTCCAAAGCAGTTGTACAAGCTaGGACTCCCACCAGCAATGGAGTGTTCCCCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: NHQIYFQSSCTS*DSHQQWSVPLD Trigger: ATCCAGGGGAACACTCCATTGCTGGTGGGAGTCCAAGCTTGTACAACTGCTTTGGAAGTAAATTTGGTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | CGCTTAACTCAAGAACCTGGGGCAAAGTGTTCTGCTTaGATTCACCTGCCACTTCCAGAACTCAGTTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: RLTQEPGAKCSA*IHLPLPELSSL Trigger: CAAAGAACTGAGTTCTGGAAGTGGCAGGTGAATCAAAGCAGAACACTTTGCCCCAGGTTCTTGAGTTAAGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR TCA 90 bp | TTCTGCTTTGATTCACCTGCCACTTCCAGAACTCAGTTCTTTGCAGATGTAAGATTGCCACTCCTCATATaGCATCTGCTCAGGCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: FCFDSPATSRTQFFADVRLPLLI*HLLRLR Trigger: CCTAAGCCTGAGCAGATGTCATATGAGGAGTGGCAA...TCTTACATCTGCAAAGAACTGAGTTCTGGAAGTGGCAGGTGAATCAAAGCAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | ATTCAAGAACACATGCACATACCCCCTGTGGGAGGGAACAATGAGTTTTCTGCCTCAGTTTTCCTCGAATaGAGAACACTCCAGCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: IQEHMHIPPVGGNNEFSASVFLE*RTLQQN Trigger: ATTCTGCTGGAGTGTTCTGCATTCGAGGAAAACTGA...GGCAGAAAACTCATTGTTCCCTCCCACAGGGGGTATGTGCATGTGTTCTTGAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR CCA 90 bp | AATAAAAGCAATGACTGTGGAGCTCCTCCTCAAAGCAAGTCTAGTAGACTACCTCACTGGCTTGGAAAATaGGGTCCTGATCTTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: NKSNDCGAPPQSKSSRLPHWLGK*GPDLPG Trigger: ACCAGGAAGATCAGGACCCCATTTTCCAAGCCAGTG...AGGTAGTCTACTAGACTTGCTTTGAGGAGGAGCTCCACAGTCATTGCTTTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | AACAAAGCTGCTGTGAACACAGTTGAGCAAGTGTCTTaGTGGGATGGTAGAGGTTCTTTTGGGTATTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: NKAAVNTVEQVS*WDGRGSFGYLP Trigger: GGGCAAATACCCAAAAGAACCTCTACCATCCCACAAAGACACTTGCTCAACTGTGTTCACAGCAGCTTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | CACTTAGGCTGTGTGCACACAAGTGTTTCTCCCATGTaGCCTCATGGAGGAAGGAACTATACTATCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: HLGCVHTSVSPM*PHGGRNYTILI Trigger: AATCAAGATAGTATAGTTCCTTCCTCCATGAGGCAACATGGGAGAAACACTTGTGTGCACACAGCCTAAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR GCA 90 bp | TTCTGCTTTGATTCACCTGCCACTTCCAGAACTCAGTTCTTTGCAGATGTAAGATCCTCATATGACATCTaGTCAGGCTTAGGGATAGAG | + |
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Preference number: 4 (lower is better) Translates to: FCFDSPATSRTQFFADVRSSYDI*SGLGIE Trigger: CTCTATCCCTAAGCCTGAGCAGATGTCATATGAGGA...TCTTACATCTGCAAAGAACTGAGTTCTGGAAGTGGCAGGTGAATCAAAGCAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | CTGTACTTTATGGCTAAAATCCACTTGCAAGTGAGCTaGTACCATGTTTGTGTTTCTGGGTCTGGGTTACAG | + |
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Preference number: 4 (lower is better) Translates to: LYFMAKIHLQVS*YHVCVSGSGLQ Trigger: CTGTAACCCAGACCCAGAAACACAAACATGGTACAAGCTCACTTGCAAGTGGATTTTAGCCATAAAGTACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | ACGATTAGGAAAACTAACCATTCGATAGGATTTTTATaGTCTGAAGACCAACAAGGTAGGGCTGGAGAGATG | + |
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Preference number: 4 (lower is better) Translates to: TIRKTNHSIGFL*SEDQQGRAGEM Trigger: CATCTCTCCAGCCCTACCTTGTTGGTCTTCAGACAATAAAAATCCTATCGAATGGTTAGTTTTCCTAATCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | CCCATGTTGCCTCATGGAGGAAGGAACTATACTATCTaGATTGACTTTATAGGCTTTGGCCTCAATAAAATA | + |
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Preference number: 4 (lower is better) Translates to: PMLPHGGRNYTI*IDFIGFGLNKI Trigger: TATTTTATTGAGGCCAAAGCCTATAAAGTCAATCAAGATAGTATAGTTCCTTCCTCCATGAGGCAACATGGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| 3UTR CAA 72 bp | AAAGGCTACGTGATTAGGTTATATCTACTTAGGTCCTaGTGCAATGTAACAATTGTGCAGAGAAAAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: KGYVIRLYLLRS*CNVTIVQRKIF Trigger: GAAGATTTTTCTCTGCACAATTGTTACATTGCACAAGGACCTAAGTAGATATAACCTAATCACGTAGCCTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 90 bp | GCAGGAGCTCGGCGTCCAGCTGCTCGCGGATGCCCGTGCGCTTCCTaGTCAGGTAGCGGGGCGACAGGGCGATGTGCCTGCGGTGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: AGARRPAARGCPCAS*SGSGATGRCACGAG Trigger: CCCCGCACCGCAGGCACATCGCCCTGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCATCCGCGAGCAGCTGGACGCCGAGCTCCTGC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 90 bp | CGGAGTAGCGCAGGAGCTCGGCGTCCAGCTGCTCGCGGATGCCCGTaGGCTTCCTGCTCAGGTAGCGGGGCGACAGGGCGATGTGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: RSSAGARRPAARGCP*ASCSGSGATGRCAC Trigger: GCAGGCACATCGCCCTGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCATCCGCGAGCAGCTGGACGCCGAGCTCCTGCGCTACTCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 90 bp | CCGTGCGCTTCCTGCTCAGGTAGCGGGGCGACAGGGCGATGTGCCTaGGGTGCGGGGCAGCCACCAAGCACGAATAGCGGCTGCCCACCA | + |
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Preference number: 5 (lower is better) Translates to: PCASCSGSGATGRCA*GAGQPPSTNSGCPP Trigger: TGGTGGGCAGCCGCTATTCGTGCTTGGTGGCTGCCCCGCACCGCAGGCACATCGCCCTGTCGCCCCGCTACCTGAGCAGGAAGCGCACGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 90 bp | GGCTCTCGGAGTAGCGCAGGAGCTCGGCGTCCAGCTGCTCGCGGATaGCCGTGCGCTTCCTGCTCAGGTAGCGGGGCGACAGGGCGATGT | + |
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Preference number: 5 (lower is better) Translates to: GSRSSAGARRPAARG*PCASCSGSGATGRC Trigger: ACATCGCCCTGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCATCCGCGAGCAGCTGGACGCCGAGCTCCTGCGCTACTCCGAGAGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR CAA 90 bp | AAGAACACATGCACATACCCCCTGTGGGAGGGAACAATGAGTTTTCTGCCCATCACTGGAGTCACTGGCTaGGAAAATGGGGTCCTGATC | + |
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Preference number: 5 (lower is better) Translates to: KNTCTYPLWEGTMSFLPITGVTG*ENGVLI Trigger: GATCAGGACCCCATTTTCCAAGCCAGTGACTCCAGT...GATGGGCAGAAAACTCATTGTTCCCTCCCACAGGGGGTATGTGCATGTGTTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS-3UTR CAA 90 bp | CTTAGGCTGTGTGCACACAAGTGTTTCTCCCATGTTGCCTCATGGAGGAAGGAATGCAGAGTGCTTAAGTaGCAAACTGGTGGTACTCAG | + |
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Preference number: 5 (lower is better) Translates to: LRLCAHKCFSHVASWRKECRVLK*QTGGTQ Trigger: CTGAGTACCACCAGTTTGCAACTTAAGCACTCTGCA...TTCCTTCCTCCATGAGGCAACATGGGAGAAACACTTGTGTGCACACAGCCTAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 90 bp | ACCTCTTCAACGACAGTTTCTGCTACATCTTCAGAAACTGCAGAGTaGTTAAGTTGCAAACTGGTGGTACTCAGTTTTCCTCGAATGCAG | + |
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Preference number: 5 (lower is better) Translates to: TSSTTVSATSSETAE*LSCKLVVLSFPRMQ Trigger: CTGCATTCGAGGAAAACTGAGTACCACCAGTTTGCAACTTAAGCACTCTGCAGTTTCTGAAGATGTAGCAGAAACTGTCGTTGAAGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 90 bp | TTCAACAACCTCTTCAACGACAGTTTCTGCTACATCTTCAGAAACTaGAGAGTGCTTAAGTTGCAAACTGGTGGTACTCAGTTTTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: FNNLFNDSFCYIFRN*RVLKLQTGGTQFSS Trigger: CGAGGAAAACTGAGTACCACCAGTTTGCAACTTAAGCACTCTGCAGTTTCTGAAGATGTAGCAGAAACTGTCGTTGAAGAGGTTGTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS CCA 90 bp | TTAGGGATAGAGGCGTTAAAACATCCATGGACTAGACAGCCAATATaGCTAGACGATACTTTATTAACTGTACCCATTAACGTCTGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LGIEALKHPWTRQPI*LDDTLLTVPINVCP Trigger: TGGGCAGACGTTAATGGGTACAGTTAATAAAGTATCGTCTAGCCATATTGGCTGTCTAGTCCATGGATGTTTTAACGCCTCTATCCCTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS CCA 90 bp | TATGACATCTGCTCAGGCTTAGGGATAGAGGCGTTAAAACATCCATaGACTAGACAGCCAATATGGCTAGACGATACTTTATTAACTGTA | + |
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Preference number: 5 (lower is better) Translates to: YDICSGLGIEALKHP*TRQPIWLDDTLLTV Trigger: TACAGTTAATAAAGTATCGTCTAGCCATATTGGCTGTCTAGTCCATGGATGTTTTAACGCCTCTATCCCTAAGCCTGAGCAGATGTCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS CCA 90 bp | GTCCTGATCTTCCTGGTGCCTTTTCTTCTTCTTTTTCTTCTTCTTTaGCTCTTCCTCAAAGAAGTCATTCACATTATCACTACATGGTAT | + |
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Preference number: 5 (lower is better) Translates to: VLIFLVPFLLLFLLL*LFLKEVIHIITTWY Trigger: ATACCATGTAGTGATAATGTGAATGACTTCTTTGAGGAAGAGCCAAAGAAGAAGAAAAAGAAGAAGAAAAGGCACCAGGAAGATCAGGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 72 bp | TGCGGTGCGGGGCAGCCACCAAGCACGAATAGCGGCTaGCCACCAGCGCGCACGCCGCCGCGTAGCTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: CGAGQPPSTNSG*PPARTPPRSSA Trigger: TGCCGAGCTACGCGGCGGCGTGCGCGCTGGTGGGCAGCCGCTATTCGTGCTTGGTGGCTGCCCCGCACCGCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 72 bp | CGGCGTCCAGCTGCTCGCGGATGCCCGTGCGCTTCCTaGTCAGGTAGCGGGGCGACAGGGCGATGTGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: RRPAARGCPCAS*SGSGATGRCAC Trigger: GCAGGCACATCGCCCTGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCATCCGCGAGCAGCTGGACGCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 72 bp | GCAGGAGCTCGGCGTCCAGCTGCTCGCGGATGCCCGTaGGCTTCCTGCTCAGGTAGCGGGGCGACAGGGCGA | + |
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Preference number: 6 (lower is better) Translates to: AGARRPAARGCP*ASCSGSGATGR Trigger: TCGCCCTGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCATCCGCGAGCAGCTGGACGCCGAGCTCCTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 72 bp | TCCTGCTCAGGTAGCGGGGCGACAGGGCGATGTGCCTaGGGTGCGGGGCAGCCACCAAGCACGAATAGCGGC | + |
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Preference number: 6 (lower is better) Translates to: SCSGSGATGRCA*GAGQPPSTNSG Trigger: GCCGCTATTCGTGCTTGGTGGCTGCCCCGCACCGCAGGCACATCGCCCTGTCGCCCCGCTACCTGAGCAGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS GCA 72 bp | AGTAGCGCAGGAGCTCGGCGTCCAGCTGCTCGCGGATaGCCGTGCGCTTCCTGCTCAGGTAGCGGGGCGACA | + |
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Preference number: 6 (lower is better) Translates to: SSAGARRPAARG*PCASCSGSGAT Trigger: TGTCGCCCCGCTACCTGAGCAGGAAGCGCACGGGCATCCGCGAGCAGCTGGACGCCGAGCTCCTGCGCTACT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS CAA 90 bp | GGTCCTGATCTTCCTGGTGCCTTTTCTTCTTCTTTTTCTTCTTCTTaGGCTCTTCCTCAAAGAAGTCATTCACATTATCACTACATGGTA | + |
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Preference number: 6 (lower is better) Translates to: GPDLPGAFSSSFSSS*ALPQRSHSHYHYMV Trigger: TACCATGTAGTGATAATGTGAATGACTTCTTTGAGGAAGAGCCAAAGAAGAAGAAAAAGAAGAAGAAAAGGCACCAGGAAGATCAGGACC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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| CDS CCA 72 bp | GAGGCGTTAAAACATCCATGGACTAGACAGCCAATATaGCTAGACGATACTTTATTAACTGTACCCATTAAC | + |
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Preference number: 6 (lower is better) Translates to: EALKHPWTRQPI*LDDTLLTVPIN Trigger: GTTAATGGGTACAGTTAATAAAGTATCGTCTAGCCATATTGGCTGTCTAGTCCATGGATGTTTTAACGCCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020877.9 |
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