Pregenerated sensors for POLR1D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029642Ensembl transcript IDs: ENSMUST00000050970.4, ENSMUST00000110557.5, ENSMUST00000200993.2, ENSMUST00000202444.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCCGGGAGGTCCGGGAGGTCCGCTTCCGTGGAGGAGAGCAGCCTaGGGAGCCCCGGGACGAGTGAAGGCTGCGCTTGTACGAGTGACT | + |
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Preference number: 1 (lower is better) Translates to: VPGGPGGPLPWRRAA*GAPGRVKAALVRVT Trigger: AGTCACTCGTACAAGCGCAGCCTTCACTCGTCCCGGGGCTCCGCAGGCTGCTCTCCTCCACGGAAGCGGACCTCCCGGACCTCCCGGGAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR CCA 90 bp | CAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTaGGCTGGGCTAGCCCTGCGGCTGTCTCATCGCCTGCTGGGCCGT | + |
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Preference number: 1 (lower is better) Translates to: QPPCLPCFTQWQVQC*AGLALRLSHRLLGR Trigger: ACGGCCCAGCAGGCGATGAGACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR CCA 90 bp | CAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTaGCAGGTGCAGTGCTGGGCTGGGCTAGCCCTGCGGCTGTCTCAT | + |
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Preference number: 1 (lower is better) Translates to: QVPAGQPPCLPCFTQ*QVQCWAGLALRLSH Trigger: ATGAGACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR GCA 90 bp | GGCCAGAGTGAAAACGCTGCACATGAAGACCCGAGGGCCCTCCCTTaGCTGGCAACCCTCCAGTCCTCTCTCTCATGTCGGGAGGCAGCG | + |
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Preference number: 1 (lower is better) Translates to: GQSENAAHEDPRALP*LATLQSSLSCREAA Trigger: CGCTGCCTCCCGACATGAGAGAGAGGACTGGAGGGTTGCCAGGCAAGGGAGGGCCCTCGGGTCTTCATGTGCAGCGTTTTCACTCTGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR GCA 90 bp | GAAAGTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTaGTTCACTCAGTGGCAGGTGCAGTGCTGGGCTGGGCTAGCCCTG | + |
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Preference number: 1 (lower is better) Translates to: ESHSQVPAGQPPCLP*FTQWQVQCWAGLAL Trigger: CAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGACTTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR CCA 90 bp | GCGTGTTCTGACTCCTCAAGGGAGAGGCAAAGAAGCTTCAGGTTTTaGACCCTCCCAGATCCCGTGCTTCTAGGCTCTTATCCTGCCTTA | + |
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Preference number: 1 (lower is better) Translates to: ACSDSSRERQRSFRF*TLPDPVLLGSYPAL Trigger: TAAGGCAGGATAAGAGCCTAGAAGCACGGGATCTGGGAGGGTCCAAAACCTGAAGCTTCTTTGCCTCTCCCTTGAGGAGTCAGAACACGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR TCA 90 bp | AACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTaGGAAAGTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTT | + |
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Preference number: 1 (lower is better) Translates to: NNHTVPTASLKQRTH*ESHSQVPAGQPPCL Trigger: AAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGACTTTCTCAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR GCA 90 bp | TCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTACTaGCCTCTTTTTGTTCATGGTCTTGCTCTTTATGGGAGGGCAGTG | + |
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Preference number: 1 (lower is better) Translates to: SHLLPSGLGFCQAPY*PLFVHGLALYGRAV Trigger: CACTGCCCTCCCATAAAGAGCAAGACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR CCA 90 bp | CACATTTTCTTTCCTACAGGACAGTACATGCTGCAATCACAATTCTaGGTTCTGCACCATCCTGAGGGTGGTCCTGCTTGTACCCTGCAC | + |
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Preference number: 1 (lower is better) Translates to: HIFFPTGQYMLQSQF*VLHHPEGGPACTLH Trigger: GTGCAGGGTACAAGCAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| 3UTR CCA 90 bp | GAATCTTTTATTTGTACCAGCAAGAGGACACTTCATCCTACACAATaGGGCCAGAGTGAAAACGCTGCACATGAAGACCCGAGGGCCCTC | + |
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Preference number: 1 (lower is better) Translates to: ESFICTSKRTLHPTQ*GQSENAAHEDPRAL Trigger: GAGGGCCCTCGGGTCTTCATGTGCAGCGTTTTCACTCTGGCCCCATTGTGTAGGATGAAGTGTCCTCTTGCTGGTACAAATAAAAGATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR GCA 90 bp | GGGTCAATAGCTAGAGCCACATTTTCTTTCCTACAGGACAGTACATaGTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTC | + |
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Preference number: 1 (lower is better) Translates to: GSIARATFSFLQDST*CNHNSGFCTILRVV Trigger: GACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCTAGCTATTGACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| 3UTR GCA 90 bp | GACTTCGGTACTTCTTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTaGCAGGCTCCTTACTGCCCTCTTTTTGTTCATGGTCTTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: DFGTSSHLLPSGLGF*QAPYCPLFVHGLAL Trigger: AAGAGCAAGACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACCGAAGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR GCA 90 bp | TCAATAGCTAGAGCCACATTTTCTTTCCTACAGGACAGTACATGCTaGAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTG | + |
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Preference number: 1 (lower is better) Translates to: SIARATFSFLQDSTC*NHNSGFCTILRVVL Trigger: CAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCTAGCTATTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| 3UTR GCA 90 bp | TGGCTTTTGCCAGGCTCCTTACTGCCCTCTTTTTGTTCATGGTCTTaGTCTTTATGGGAGGGCAGTGTGTTCTTAATTGTGTTAATTAGG | + |
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Preference number: 1 (lower is better) Translates to: WLLPGSLLPSFCSWS*SLWEGSVFLIVLIR Trigger: CCTAATTAACACAATTAAGAACACACTGCCCTCCCATAAAGAGCAAGACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCAAAAGCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGTCCGGGAGGTCCGCTTCCGTGGAGGAGAGCAGCCTGCGGAGCCCCGGGACGGTGCAGTGCTGGGCTaGGCTAGCCCTGCGGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: EVREVRFRGGEQPAEPRDGAVLG*ASPAAV Trigger: GACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACC...GTCCCGGGGCTCCGCAGGCTGCTCTCCTCCACGGAAGCGGACCTCCCGGACCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGGTGCAGTGCTGGGCTGGGCTAGCCCTGCGGCTGTCTCATCGCCTGCTGGGCCTTGCTTCACTCAGTaGCAGGTGCAGTGCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: AGAVLGWASPAAVSSPAGPCFTQ*QVQCWA Trigger: AGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGG...CCCAGCAGGCGATGAGACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACCTGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | CAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGGCAGGTGCAGTaGTGGGCTGGGCTAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: QVPAGQPPCLPCFTQWQVQWQVQ*WAGLAL Trigger: CAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTG...CACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | CACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGTGGAGGAGAGCAGCCTaGGGAGCCCCGGGACGAGTG | + |
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Preference number: 2 (lower is better) Translates to: HSQVPAGQPPCLPCFTQWWRRAA*GAPGRV Trigger: CACTCGTCCCGGGGCTCCGCAGGCTGCTCTCCTCCA...CCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | CACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGTCGCCTGCTGGGCCGTaGGTCGCACTTGTCCCGGGA | + |
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Preference number: 2 (lower is better) Translates to: HSQVPAGQPPCLPCFTQWSPAGP*VALVPG Trigger: TCCCGGGACAAGTGCGACCCACGGCCCAGCAGGCGA...CCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | GAGGTCCGGGAGGTCCGCTTCCGTGGAGGAGAGCAGCCTGCGGAGCCCCGGGACTGCCAGGCTCCTTACTaGCCTCTTTTTGTTCATGGT | + |
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Preference number: 2 (lower is better) Translates to: EVREVRFRGGEQPAEPRDCQAPY*PLFVHG Trigger: ACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCA...GTCCCGGGGCTCCGCAGGCTGCTCTCCTCCACGGAAGCGGACCTCCCGGACCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | GTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTCAGTGGCAGGTGCAGTaGTGGGCTGGGCTAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: VTLRCQPANLPVFLASLSQWQVQ*WAGLAL Trigger: CAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTG...ACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGGTGCAGTGCTGGGCTGGGCTAGCCCTGCGGCTGTCTCATCGCCTGCTGGGAAACAAAGGACCCACTaGGAAAGTCACTCTCAGGTG | + |
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Preference number: 2 (lower is better) Translates to: AGAVLGWASPAAVSSPAGKQRTH*ESHSQV Trigger: CACCTGAGAGTGACTTTCTCAGTGGGTCCTTTGTTT...CCCAGCAGGCGATGAGACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | TCTTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTACTGCCCTTGGAGGAGAGCAGCCTaGGGAGCCCCGGGACGAGTG | + |
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Preference number: 2 (lower is better) Translates to: SSHLLPSGLGFCQAPYCPWRRAA*GAPGRV Trigger: CACTCGTCCCGGGGCTCCGCAGGCTGCTCTCCTCCA...AGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | GTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTCCTTGCTTCACTCAGTaGCAGGTGCAGTGCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: VTLRCQPANLPVFLASLSPCFTQ*QVQCWA Trigger: AGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGG...ACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR TCA 90 bp | CACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGAAACAAAGGACCCACTaGGAAAGTCACTCTCAGGTG | + |
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Preference number: 2 (lower is better) Translates to: HSQVPAGQPPCLPCFTQWKQRTH*ESHSQV Trigger: CACCTGAGAGTGACTTTCTCAGTGGGTCCTTTGTTT...CCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTTGCCAGGCTCCTTACTaGCCTCTTTTTGTTCATGGT | + |
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Preference number: 2 (lower is better) Translates to: SGASRPTSLSSLLHSVAGCQAPY*PLFVHG Trigger: ACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCA...ACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | CAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTGGGTGCAGTGCTGGGCTaGGCTAGCCCTGCGGCTGTC | + |
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Preference number: 2 (lower is better) Translates to: QQEQPHSTNSLLKTKDPLGAVLG*ASPAAV Trigger: GACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACC...CAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTACTGCCCTCTCCTTGCTTCACTCAGTaGCAGGTGCAGTGCTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: FPLASFWSWLLPGSLLPSPCFTQ*QVQCWA Trigger: AGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGG...AGAGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | TTATTTGTACCAGCAAGAGGACACTTCATCCTACACAATGGGGCCAGAGTGAAACAGTGGCAGGTGCAGTaGTGGGCTGGGCTAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: LFVPARGHFILHNGARVKQWQVQ*WAGLAL Trigger: CAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTG...TTTCACTCTGGCCCCATTGTGTAGGATGAAGTGTCCTCTTGCTGGTACAAATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR CAA 90 bp | GTACGAGTGACTTCGGTACTTCTTCCCACTTGCTTCCTTCTGGTCTaGGCTTTTGCCAGGCTCCTTACTGCCCTCTTTTTGTTCATGGTC | + |
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Preference number: 2 (lower is better) Translates to: VRVTSVLLPTCFLLV*AFARLLTALFLFMV Trigger: GACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACCGAAGTCACTCGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCAACAGCTGTATGGGTCAATAGCTAGAGCCACATTTTCTTTCCTACAGGACGGTTCTGCACCATCCTaGGGGTGGTCCTGCTTGTAC | + |
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Preference number: 2 (lower is better) Translates to: FQQLYGSIARATFSFLQDGSAPS*GWSCLY Trigger: GTACAAGCAGGACCACCCTCAGGATGGTGCAGAACC...GTCCTGTAGGAAAGAAAATGTGGCTCTAGCTATTGACCCATACAGCTGTTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| 3UTR-3UTR GCA 90 bp | GACTTCGGTACTTCTTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTTTTTGTTCATGGTCTTaGTCTTTATGGGAGGGCAGT | + |
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Preference number: 2 (lower is better) Translates to: DFGTSSHLLPSGLGFCQAFCSWS*SLWEGS Trigger: ACTGCCCTCCCATAAAGAGCAAGACCATGAACAAAA...AGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACCGAAGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCATGGTCTTGCTCTTTATaGGAGGGCAGTGTGTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: QQQEQPHSTNSLLKTKDPWSCSL*EGSVFL Trigger: TAAGAACACACTGCCCTCCCATAAAGAGCAAGACCA...TGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGAATTTATTAGGCAAATATACTTGCAGAGATTCCAACAGCTGTATGGGTCACAGGACAGTACATGCTaGAATCACAATTCTGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: REFIRQIYLQRFQQLYGSQDSTC*NHNSGF Trigger: GAACCCAGAATTGTGATTGCAGCATGTACTGTCCTG...TGACCCATACAGCTGTTGGAATCTCTGCAAGTATATTTGCCTAATAAATTCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| 3UTR CCA 72 bp | GCACTTGTCCCGGGAGGTCCGGGAGGTCCGCTTCCGTaGAGGAGAGCAGCCTGCGGAGCCCCGGGACGAGTG | + |
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Preference number: 3 (lower is better) Translates to: ALVPGGPGGPLP*RRAACGAPGRV Trigger: CACTCGTCCCGGGGCTCCGCAGGCTGCTCTCCTCCACGGAAGCGGACCTCCCGGACCTCCCGGGACAAGTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR CCA 72 bp | GCTAGCCCTGCGGCTGTCTCATCGCCTGCTGGGCCGTaGGTCGCACTTGTCCCGGGAGGTCCGGGAGGTCCG | + |
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Preference number: 3 (lower is better) Translates to: ASPAAVSSPAGP*VALVPGGPGGP Trigger: CGGACCTCCCGGACCTCCCGGGACAAGTGCGACCCACGGCCCAGCAGGCGATGAGACAGCCGCAGGGCTAGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR GCA 72 bp | CCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTaGTGGGCTGGGCTAGCCCTGCGGCTGTCTCATCGC | + |
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Preference number: 3 (lower is better) Translates to: PCLPCFTQWQVQ*WAGLALRLSHR Trigger: GCGATGAGACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR CCA 72 bp | ACGCTGCACATGAAGACCCGAGGGCCCTCCCTTGCCTaGCAACCCTCCAGTCCTCTCTCTCATGTCGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: TLHMKTRGPSLA*QPSSPLSHVGR Trigger: CCTCCCGACATGAGAGAGAGGACTGGAGGGTTGCCAGGCAAGGGAGGGCCCTCGGGTCTTCATGTGCAGCGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR CCA 72 bp | TGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTaGGCTGGGCTAGCCCTGCGGCTGTCTCATCGCCTG | + |
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Preference number: 3 (lower is better) Translates to: CLPCFTQWQVQC*AGLALRLSHRL Trigger: CAGGCGATGAGACAGCCGCAGGGCTAGCCCAGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR GCA 72 bp | GAAAACGCTGCACATGAAGACCCGAGGGCCCTCCCTTaGCTGGCAACCCTCCAGTCCTCTCTCTCATGTCGG | + |
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Preference number: 3 (lower is better) Translates to: ENAAHEDPRALP*LATLQSSLSCR Trigger: CCGACATGAGAGAGAGGACTGGAGGGTTGCCAGGCAAGGGAGGGCCCTCGGGTCTTCATGTGCAGCGTTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR-3UTR CAA 90 bp | CACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGGGTACTTCTTCCCACTaGCTTCCTTCTGGTCTTGGC | + |
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Preference number: 3 (lower is better) Translates to: HSQVPAGQPPCLPCFTQWGTSSH*LPSGLG Trigger: GCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACC...CCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR TCA 72 bp | CCAGTCCTCTCTCTCATGTCGGGAGGCAGCGTGTTCTaGCTCCTCAAGGGAGAGGCAAAGAAGCTTCAGGTT | + |
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Preference number: 3 (lower is better) Translates to: PVLSLMSGGSVF*LLKGEAKKLQV Trigger: AACCTGAAGCTTCTTTGCCTCTCCCTTGAGGAGTCAGAACACGCTGCCTCCCGACATGAGAGAGAGGACTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| 3UTR GCA 72 bp | CAGGACAGTACATGCTGCAATCACAATTCTGGGTTCTaGACCATCCTGAGGGTGGTCCTGCTTGTACCCTGC | + |
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Preference number: 3 (lower is better) Translates to: QDSTCCNHNSGF*TILRVVLLVPC Trigger: GCAGGGTACAAGCAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| 3UTR TCA 72 bp | ACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTaGGAAAGTCACTCTCAGGTGCCAGCCGGCCAACCT | + |
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Preference number: 3 (lower is better) Translates to: TVPTASLKQRTH*ESHSQVPAGQP Trigger: AGGTTGGCCGGCTGGCACCTGAGAGTGACTTTCTCAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| 3UTR GCA 72 bp | GCGCTTGTACGAGTGACTTCGGTACTTCTTCCCACTTaGTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: ALVRVTSVLLPT*FLLVLAFARLL Trigger: AAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACCGAAGTCACTCGTACAAGCGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| 3UTR CCA 72 bp | GACTCCTCAAGGGAGAGGCAAAGAAGCTTCAGGTTTTaGACCCTCCCAGATCCCGTGCTTCTAGGCTCTTAT | + |
|
Preference number: 3 (lower is better) Translates to: DSSRERQRSFRF*TLPDPVLLGSY Trigger: ATAAGAGCCTAGAAGCACGGGATCTGGGAGGGTCCAAAACCTGAAGCTTCTTTGCCTCTCCCTTGAGGAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTACCAGCAAGAGGACACTTCATCCTACACAATGGGGCCAGAGTGAAAACGCTACCTCCCTGTCTTCCTaGCTTCACTCAGTGGCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: CTSKRTLHPTQWGQSENATSLSS*LHSVAG Trigger: ACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGT...AGCGTTTTCACTCTGGCCCCATTGTGTAGGATGAAGTGTCCTCTTGCTGGTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTACCAGCAAGAGGACACTTCATCCTACACAATGGGGCCAGAGTGAAAACGCTTGCTTCCTTCTGGTCTaGGCTTTTGCCAGGCTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: CTSKRTLHPTQWGQSENACFLLV*AFARLL Trigger: AAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCA...AGCGTTTTCACTCTGGCCCCATTGTGTAGGATGAAGTGTCCTCTTGCTGGTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
||
| 3UTR CCA 72 bp | TTTCCTACAGGACAGTACATGCTGCAATCACAATTCTaGGTTCTGCACCATCCTGAGGGTGGTCCTGCTTGT | + |
|
Preference number: 3 (lower is better) Translates to: FPTGQYMLQSQF*VLHHPEGGPAC Trigger: ACAAGCAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| 3UTR-3UTR CAA 90 bp | CAACAGCAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACACCTCCCTGTCTTCCTaGCTTCACTCAGTGGCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: QQQQEQPHSTNSLLKTKDTSLSS*LHSVAG Trigger: ACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGT...GTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTGCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| 3UTR GCA 72 bp | AGAGCCACATTTTCTTTCCTACAGGACAGTACATGCTaGAATCACAATTCTGGGTTCTGCACCATCCTGAGG | + |
|
Preference number: 3 (lower is better) Translates to: RATFSFLQDSTC*NHNSGFCTILR Trigger: CCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| 3UTR GCA 72 bp | GCTAGAGCCACATTTTCTTTCCTACAGGACAGTACATaGTGCAATCACAATTCTGGGTTCTGCACCATCCTG | + |
|
Preference number: 3 (lower is better) Translates to: ARATFSFLQDST*CNHNSGFCTIL Trigger: CAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCTAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| 3UTR-3UTR CAA 90 bp | TTCGGTACTTCTTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTTAGGAATCTTTTATTaGTACCAGCAAGAGGACACT | + |
|
Preference number: 3 (lower is better) Translates to: FGTSSHLLPSGLGFCQAPLGIFY*YQQEDT Trigger: AGTGTCCTCTTGCTGGTACAAATAAAAGATTCCTAA...AGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACCGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| 3UTR-3UTR CAA 90 bp | CAACAGCAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACTTAGGAATCTTTTATTaGTACCAGCAAGAGGACACT | + |
|
Preference number: 3 (lower is better) Translates to: QQQQEQPHSTNSLLKTKDLGIFY*YQQEDT Trigger: AGTGTCCTCTTGCTGGTACAAATAAAAGATTCCTAA...GTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTGCTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| 3UTR CCA 72 bp | TTACTGCCCTCTTTTTGTTCATGGTCTTGCTCTTTATaGGAGGGCAGTGTGTTCTTAATTGTGTTAATTAGG | + |
|
Preference number: 3 (lower is better) Translates to: LLPSFCSWSCSL*EGSVFLIVLIR Trigger: CCTAATTAACACAATTAAGAACACACTGCCCTCCCATAAAGAGCAAGACCATGAACAAAAAGAGGGCAGTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR GCA 90 bp | TCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTTGGAGGAGAGCAGCCTaGGGAGCCCCGGGACGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: SGASRPTSLSSLLHSVAGWRRAA*GAPGRV Trigger: CACTCGTCCCGGGGCTCCGCAGGCTGCTCTCCTCCA...ACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CCA 90 bp | CGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTGGGCGGAGGTCCGCTTCCGTaGAGGAGAGCAGCCTGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: RPTSLSSLLHSVAGAVLGGGPLP*RRAACG Trigger: TCCGCAGGCTGCTCTCCTCCACGGAAGCGGACCTCC...GCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CCA 90 bp | GGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTGGGCTTCGCCTGCTGGGCCGTaGGTCGCACTTGTCCCGGGA | + |
|
Preference number: 4 (lower is better) Translates to: GQPPCLPCFTQWQVQCWASPAGP*VALVPG Trigger: TCCCGGGACAAGTGCGACCCACGGCCCAGCAGGCGA...AGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| 3UTR CAA 72 bp | CTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTaGCTTCACTCAGTGGCAGGTGCAGTGCTGGGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LSGASRPTSLSS*LHSVAGAVLGW Trigger: CCAGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR GCA 90 bp | GTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGGACGAGTGAAGGCTaGGCTTGTACGAGTGACTTC | + |
|
Preference number: 4 (lower is better) Translates to: VTLRCQPANLPVFLASLSGTSEG*ACTSDF Trigger: GAAGTCACTCGTACAAGCGCAGCCTTCACTCGTCCC...ACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CCA 90 bp | TGCTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTGCTTGTAAAACGGCTCAACAGCTaGAAGGGCACCCCGGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: CCNHNSGFCTILRVVLLVKRLNS*KGTPGL Trigger: CAGACCCGGGGTGCCCTTCCAGCTGTTGAGCCGTTT...TACAAGCAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CCA 90 bp | CAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGTTAGCAATTCCTCTATaGCTTTCCTCTCCAGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QVPAGQPPCLPCFTQWQVLAIPL*LSSPAP Trigger: AGGAGCTGGAGAGGAAAGCCATAGAGGAATTGCTAA...CACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR CCA 90 bp | CTGAGAAAGTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCCACTTGCTTCCTTCTaGTCTTGGCTTTTGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LRKSLSGASRPTSLSSLLPLASF*SWLLPG Trigger: GCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGG...AAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGACTTTCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR GCA 90 bp | TCAGGTGCCAGCCGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTTTTTGTTCATGGTCTTaGTCTTTATGGGAGGGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: SGASRPTSLSSLLHSVAGFCSWS*SLWEGS Trigger: ACTGCCCTCCCATAAAGAGCAAGACCATGAACAAAA...ACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCGGCTGGCACCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CCA 90 bp | CAGTACATGCTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTTCTGTTCCAGCTGCCTaGACCATTTCCAGGGCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: QYMLQSQFWVLHHPEGGPSVPAA*TISRAV Trigger: GACAGCCCTGGAAATGGTCCAGGCAGCTGGAACAGA...AGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CCA 90 bp | TTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTACTGCCCTCTCCATTGTCTCCGCTCTaGTTTTCCCACGCTTTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: FPLASFWSWLLPGSLLPSPLSPL*FSHALP Trigger: AGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGG...AGAGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR CCA 90 bp | TCTTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTACTGCCCTCCATTGTCTCCGCTCTaGTTTTCCCACGCTTTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: SSHLLPSGLGFCQAPYCPPLSPL*FSHALP Trigger: AGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGG...AGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR TCA 90 bp | CAGTACATGCTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTTGCTGGCCTCAAACTTaGCAAGCACATGCTGGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: QYMLQSQFWVLHHPEGGPCWPQT*QAHAGR Trigger: TCTGCCAGCATGTGCTTGTCAAGTTTGAGGCCAGCA...AGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CCA 90 bp | TTCCCACTTGCTTCCTTCTGGTCTTGGCTTTTGCCAGGCTCCTTACTGCCCTCTTTAGCAATTCCTCTATaGCTTTCCTCTCCAGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: FPLASFWSWLLPGSLLPSLAIPL*LSSPAP Trigger: AGGAGCTGGAGAGGAAAGCCATAGAGGAATTGCTAA...AGAGGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCAAGTGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR GCA 90 bp | CAGTACATGCTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTAACTTGACAAGCACATaGTGGCAGACATTCAAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: QYMLQSQFWVLHHPEGGPNLTST*WQTFKS Trigger: GCTCTTGAATGTCTGCCAGCATGTGCTTGTCAAGTT...AGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CCA 90 bp | TGCTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTGCTTGTATTGACAAGCACATGCTaGCAGACATTCAAGAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: CCNHNSGFCTILRVVLLVLTSTC*QTFKSS Trigger: TGAGCTCTTGAATGTCTGCCAGCATGTGCTTGTCAA...TACAAGCAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CCA 90 bp | CAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTGCCATTGTCTCCGCTCTaGTTTTCCCACGCTTTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: QQEQPHSTNSLLKTKDPLPLSPL*FSHALP Trigger: AGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGG...CAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS-3UTR TCA 90 bp | CTTTCCTACAGGACAGTACATGCTGCAATCACAATTCTGGGTTCTGCACCATCCAGGGCACCCCGGGTCTaGATTCGCAAATTAATTTTG | + |
|
Preference number: 4 (lower is better) Translates to: LSYRTVHAAITILGSAPSRAPRV*IRKLIL Trigger: CAAAATTAATTTGCGAATTCAGACCCGGGGTGCCCT...GGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR GCA 90 bp | CCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTGAGAAAGTCACTCTGCCAGGCTCCTTACTaGCCTCTTTTTGTTCATGGT | + |
|
Preference number: 4 (lower is better) Translates to: PHSTNSLLKTKDPLRKSLCQAPY*PLFVHG Trigger: ACCATGAACAAAAAGAGGGCAGTAAGGAGCCTGGCA...GAGTGACTTTCTCAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR GCA 90 bp | CCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTGAGAAAGTCACTCGTACTTCTTCCCACTTaGTTCCTTCTGGTCTTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: PHSTNSLLKTKDPLRKSLVLLPT*FLLVLA Trigger: AGCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTAC...GAGTGACTTTCTCAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR TCA 90 bp | TATGGGTCAATAGCTAGAGCCACATTTTCTTTCCTACAGGACAGTACATGCTGCTCATTCAGGCCTTTCTaGAACGGCTCAACAGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: YGSIARATFSFLQDSTCCSFRPF*NGSTAG Trigger: TCCAGCTGTTGAGCCGTTTCAGAAAGGCCTGAATGA...GCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCTAGCTATTGACCCATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR GCA 90 bp | TTTCTTTCCTACAGGACAGTACATGCTGCAATCACAATTCTGGGTTCTGCACCAGTATGGTCCTCCTCGTaGAGGACAAATGTCACACAC | + |
|
Preference number: 4 (lower is better) Translates to: FLSYRTVHAAITILGSAPVWSSS*RTNVTH Trigger: GTGTGTGACATTTGTCCTGCACGAGGAGGACCATAC...TGGTGCAGAACCCAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR TCA 90 bp | CTAGAGCCACATTTTCTTTCCTACAGGACAGTACATGCTGCAATCACAATTCTGCTTCCGGGTTCTTCATaGTTATGTACCGCAGACAGT | + |
|
Preference number: 4 (lower is better) Translates to: LEPHFLSYRTVHAAITILLPGSS*LCTADS Trigger: ACTGTCTGCGGTACATAATCATGAAGAACCCGGAAG...CAGAATTGTGATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR GCA 90 bp | AAGAGAGAATTTATTAGGCAAATATACTTGCAGAGATTCCAACAGCTGTATGGGTCTATCTGTTCCAGCTaGCTGGACCATTTCCAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: KREFIRQIYLQRFQQLYGSICSS*LDHFQG Trigger: GCCCTGGAAATGGTCCAGGCAGCTGGAACAGATAGA...CCCATACAGCTGTTGGAATCTCTGCAAGTATATTTGCCTAATAAATTCTCTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR TCA 90 bp | TTGCAGAGATTCCAACAGCTGTATGGGTCAATAGCTAGAGCCACATTTTCTTTCATTAATTTTGCTCTCTaGAGGATGGGTCGTAGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: LQRFQQLYGSIARATFSFINFAL*RMGRSV Trigger: TACACTACGACCCATCCTTCAGAGAGCAAAATTAAT...GAAAGAAAATGTGGCTCTAGCTATTGACCCATACAGCTGTTGGAATCTCTGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR GCA 90 bp | TTGCAGAGATTCCAACAGCTGTATGGGTCAATAGCTAGAGCCACATTTTCTTTCGGGCTCCTTTTTGCTTaGCTTTTTAGCTTTATAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LQRFQQLYGSIARATFSFGLLFA*LFSFIV Trigger: GACTATAAAGCTAAAAAGGCAAGCAAAAAGGAGCCC...GAAAGAAAATGTGGCTCTAGCTATTGACCCATACAGCTGTTGGAATCTCTGCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CAA 90 bp | CGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTGGGCGGTACTTCTTCCCACTaGCTTCCTTCTGGTCTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RPTSLSSLLHSVAGAVLGGTSSH*LPSGLG Trigger: GCCAAGACCAGAAGGAAGCAAGTGGGAAGAAGTACC...GCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CAA 90 bp | AAAGGACCCACTGAGAAAGTCACTCTCAGGTGCCAGCCGGCCAACCTCCCTGTCTGCTTCCTTCTGGTCTaGGCTTTTGCCAGGCTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: KGPTEKVTLRCQPANLPVCFLLV*AFARLL Trigger: AAGGAGCCTGGCAAAAGCCAAGACCAGAAGGAAGCA...GACAGGGAGGTTGGCCGGCTGGCACCTGAGAGTGACTTTCTCAGTGGGTCCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CAA 90 bp | GGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTGGGCTTGGTTTTCCCACGCTTaGCCTCCTTTAGCAATTCCT | + |
|
Preference number: 5 (lower is better) Translates to: GQPPCLPCFTQWQVQCWAWFSHA*PPLAIP Trigger: AGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCA...AGCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
||
| CDS CCA 90 bp | TCGTGCAGGACAAATGTCACACACTGTCTATCTGTTCCAGCTGCCTaGACCATTTCCAGGGCTGTCTTCCTCTCGCCTTCAGCCATTGAG | + |
|
Preference number: 5 (lower is better) Translates to: SCRTNVTHCLSVPAA*TISRAVFLSPSAIE Trigger: CTCAATGGCTGAAGGCGAGAGGAAGACAGCCCTGGAAATGGTCCAGGCAGCTGGAACAGATAGACAGTGTGTGACATTTGTCCTGCACGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS CCA 90 bp | CAAGAGGACACTTCATCCAGCCCATCGGCCCCATTGTCTCCGCTCTaGTTTTCCCACGCTTTGCCTCCTTTAGCAATTCCTCTATGGCTT | + |
|
Preference number: 5 (lower is better) Translates to: QEDTSSSPSAPLSPL*FSHALPPLAIPLWL Trigger: AAGCCATAGAGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGGGGCCGATGGGCTGGATGAAGTGTCCTCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CAA 90 bp | CGGCCAACCTCCCTGTCTTCCTTGCTTCACTCAGTGGCAGGTGCAGTGCTGGGCTTAGGAATCTTTTATTaGTACCAGCAAGAGGACACT | + |
|
Preference number: 5 (lower is better) Translates to: RPTSLSSLLHSVAGAVLGLGIFY*YQQEDT Trigger: AGTGTCCTCTTGCTGGTACAAATAAAAGATTCCTAA...GCCCAGCACTGCACCTGCCACTGAGTGAAGCAAGGAAGACAGGGAGGTTGGCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CAA 90 bp | CAACAGCAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACTTCTGGTCTTGGCTTTaGCCAGGCTCCTTACTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: QQQQEQPHSTNSLLKTKDFWSWL*PGSLLP Trigger: GGGCAGTAAGGAGCCTGGCAAAAGCCAAGACCAGAA...GTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTGCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
||
| CDS-3UTR CAA 90 bp | GGGTCAATAGCTAGAGCCACATTTTCTTTCCTACAGGACAGTACATGCTGCAATATGCTGGCCTCAAACTaGACAAGCACATGCTGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: GSIARATFSFLQDSTCCNMLASN*TSTCWQ Trigger: CTGCCAGCATGTGCTTGTCAAGTTTGAGGCCAGCAT...ATTGCAGCATGTACTGTCCTGTAGGAAAGAAAATGTGGCTCTAGCTATTGACCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
||
| CDS-3UTR CAA 90 bp | ACATGCTGCAATCACAATTCTGGGTTCTGCACCATCCTGAGGGTGGTCCTGCTTAATGTGGGCTCCTTTTaGCTTGCCTTTTTAGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: TCCNHNSGFCTILRVVLLNVGSF*LAFLAL Trigger: TAAAGCTAAAAAGGCAAGCAAAAAGGAGCCCACATT...AAGCAGGACCACCCTCAGGATGGTGCAGAACCCAGAATTGTGATTGCAGCATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| CDS-3UTR CAA 90 bp | CAACAAGAACAACCACACAGTACCAACAGCCTCCTTAAAACAAAGGACCCACTGTGGTTTTCCCACGCTTaGCCTCCTTTAGCAATTCCT | + |
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Preference number: 5 (lower is better) Translates to: QQEQPHSTNSLLKTKDPLWFSHA*PPLAIP Trigger: AGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCA...CAGTGGGTCCTTTGTTTTAAGGAGGCTGTTGGTACTGTGTGGTTGTTCTTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| CDS-3UTR CAA 90 bp | AGAGAATTTATTAGGCAAATATACTTGCAGAGATTCCAACAGCTGTATGGGTCATCTCGCCTTCAGCCATaGAGGTCTTCAATCCTGATA | + |
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Preference number: 5 (lower is better) Translates to: REFIRQIYLQRFQQLYGSSRLQP*RSSILI Trigger: TATCAGGATTGAAGACCTCAATGGCTGAAGGCGAGA...TGACCCATACAGCTGTTGGAATCTCTGCAAGTATATTTGCCTAATAAATTCTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| CDS CAA 72 bp | CAGCAAGAGGACACTTCATCCAGCCCATCGGCCCCATaGTCTCCGCTCTGGTTTTCCCACGCTTTGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: QQEDTSSSPSAP*SPLWFSHALPP Trigger: AGGAGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGGGGCCGATGGGCTGGATGAAGTGTCCTCTTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
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| CDS CAA 90 bp | CCCAGCCCATCGGCCCCATTGTCTCCGCTCTGGTTTTCCCACGCTTaGCCTCCTTTAGCAATTCCTCTATGGCTTTCCTCTCCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PSPSAPLSPLWFSHA*PPLAIPLWLSSPAP Trigger: AGGAGCTGGAGAGGAAAGCCATAGAGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGGGGCCGATGGGCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202444.2 |
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| CDS TCA 72 bp | TGCTGGCAGACATTCAAGAGCTCATTCAGGCCTTTCTaGAACGGCTCAACAGCTGGAAGGGCACCCCGGGTC | + |
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Preference number: 6 (lower is better) Translates to: CWQTFKSSFRPF*NGSTAGRAPRV Trigger: GACCCGGGGTGCCCTTCCAGCTGTTGAGCCGTTTCAGAAAGGCCTGAATGAGCTCTTGAATGTCTGCCAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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| CDS CAA 90 bp | TCCAGCCCATCGGCCCCATTGTCTCCGCTCTGGTTTTCCCACGCTTaGCCTCCTTTAGCAATTCCTCTATGGCTTTCCTCTCCAGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: SSPSAPLSPLWFSHA*PPLAIPLWLSSPAP Trigger: AGGAGCTGGAGAGGAAAGCCATAGAGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGGGGCCGATGGGCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
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| CDS CCA 72 bp | ACTTCATCCAGCCCATCGGCCCCATTGTCTCCGCTCTaGTTTTCCCACGCTTTGCCTCCTTTAGCAATTCCT | + |
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Preference number: 6 (lower is better) Translates to: TSSSPSAPLSPL*FSHALPPLAIP Trigger: AGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGGGGCCGATGGGCTGGATGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110557.5 |
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| CDS CAA 72 bp | TCGGCCCCATTGTCTCCGCTCTGGTTTTCCCACGCTTaGCCTCCTTTAGCAATTCCTCTATGGCTTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SAPLSPLWFSHA*PPLAIPLWLSS Trigger: AGAGGAAAGCCATAGAGGAATTGCTAAAGGAGGCAAAGCGTGGGAAAACCAGAGCGGAGACAATGGGGCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110557.5 ENSMUST00000200993.2 ENSMUST00000202444.2 |
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| CDS CCA 72 bp | TTCATGATTATGTACCGCAGACAGTTTCCTAGTGTATaGTCCTCCTCGTGCAGGACAAATGTCACACACTGT | + |
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Preference number: 6 (lower is better) Translates to: FMIMYRRQFPSV*SSSCRTNVTHC Trigger: ACAGTGTGTGACATTTGTCCTGCACGAGGAGGACCATACACTAGGAAACTGTCTGCGGTACATAATCATGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000050970.4 |
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