Pregenerated sensors for POLR1C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067148Ensembl transcript IDs: ENSMUST00000087026.13, ENSMUST00000124655.8, ENSMUST00000142706.9, ENSMUST00000173232.2, ENSMUST00000173349.8
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCAAAGGTGTCTGTGGCACATTTAATAAAATGTATTGACTGGAAATaGGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGTGCAAAAG | + |
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Preference number: 1 (lower is better) Translates to: AKVSVAHLIKCIDWK*DWKGTSSNSTAVQK Trigger: CTTTTGCACTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATTTTATTAAATGTGCCACAGACACCTTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| 3UTR-3UTR GCA 90 bp | GAGCAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATGTAACAGCACAGCAGTaGAAAAGATCCAAGAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: EQFIYNNGLTKAKVSVAHVTAQQ*KRSKSS Trigger: GCTGCTCTTGGATCTTTTGCACTGCTGTGCTGTTAC...ATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| 3UTR GCA 72 bp | GAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGTaGAAAAGATCCAAGAGCAGCCACGCCCTCCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: ETGKGPLVTAQQ*KRSKSSHALPG Trigger: ACCTGGGAGGGCGTGGCTGCTCTTGGATCTTTTGCACTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| 3UTR TCA 72 bp | GTAGACTTTATGGTTGACATAGAGTTCATTGGGGTCTaGGGAATCCTTGGCAGCATTGGGGTTCCTGGTACA | + |
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Preference number: 3 (lower is better) Translates to: VDFMVDIEFIGV*GILGSIGVPGT Trigger: TGTACCAGGAACCCCAATGCTGCCAAGGATTCCTCAGACCCCAATGAACTCTATGTCAACCATAAAGTCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000173232.2 |
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| 3UTR TCA 72 bp | TCTGTGGCACATTTAATAAAATGTATTGACTGGAAATaGGACTGGAAAGGGACCTCTAGTAACAGCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: SVAHLIKCIDWK*DWKGTSSNSTA Trigger: TGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATTTTATTAAATGTGCCACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGTGGCCAGGCCGAAGCTaGGCGATGAGGATGTCGTCG | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQWPGRS*AMRMSS Trigger: CGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCA...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGCCAGGGGAGAAACACTaGCTCAGCTCCTCAGCCGCT | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQPGEKH*LSSSAA Trigger: AGCGGCTGAGGAGCTGAGCCAGTGTTTCTCCCCTGG...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGGATGTCGTCGTGCACTaGACGGATTGTGCCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQDVVVH*TDCALW Trigger: CCAGAGGGCACAATCCGTCCAGTGCACGACGACATC...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR GCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGATGAGGATGTCGTCGTaGACTGGACGGATTGTGCCC | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQMRMSS*TGRIVP Trigger: GGGCACAATCCGTCCAGTGCACGACGACATCCTCAT...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGGGAAGATTTCCCTGCTaGAGGTATCCAGCCGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQGRFPC*RYPAEH Trigger: ATGCTCGGCTGGATACCTTCAGCAGGGAAATCTTCC...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | GAGCAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATGCCGCACAGCCTTCTTaGGTTTCTCATGCCGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: EQFIYNNGLTKAKVSVAHAAQPS*VSHAGR Trigger: TCTTCCGGCATGAGAAACTCAAGAAGGCTGTGCGGC...ATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGGGAAAGCATTGGCGATaGCAGCATCAATCCCCACCA | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQGKHWR*QHQSPP Trigger: TGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCC...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGGAGTTCATTGGGGTCTaGGGAATCCTTGGCAGCATT | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQEFIGV*GILGSI Trigger: AATGCTGCCAAGGATTCCTCAGACCCCAATGAACTC...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | TATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATAAAGCCGAAGCTGAGCGATaGGGATGTCGTCGTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: YLQQRPYKGKGVCGTFNKAEAER*GCRRAL Trigger: CAGTGCACGACGACATCCTCATCGCTCAGCTTCGGC...TTTATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGTCCCCATCAGGATCTTaGTGGCTTCACTCACCAACA | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQSPSGS*WLHSPT Trigger: TGTTGGTGAGTGAAGCCATCAAGATCCTGATGGGGA...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGGAGCATTGGCCACCCTaGCCACCTTTTTACCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQEHWPP*PPFYLV Trigger: TACAAGGTAAAAAGGTGGCCAGGGTGGCCAATGCTC...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR TCA 90 bp | ATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATGGCTGTGGCCACTGGTaGGAACTTGGCATGGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: IYLQQRPYKGKGVCGTFNGCGHW*ELGMVF Trigger: AAAGACCATGCCAAGTTCTCACCAGTGGCCACAGCC...ATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR GCA 90 bp | GAGCAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATGTGTCTTCATCCATTTaGACCACGTCCACACGGAAA | + |
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Preference number: 4 (lower is better) Translates to: EQFIYNNGLTKAKVSVAHVSSSI*TTSTRK Trigger: TTTCCGTGTGGACGTGGTGCAAATGGATGAAGACAC...ATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR GCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGTTCTTGAGTTTCTCATaGCGGAAGATTTCCCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQFLSFS*RKISLL Trigger: CAGCAGGGAAATCTTCCGGCATGAGAAACTCAAGAA...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | TATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATAAATACCGGGAAAGTCCGTaGTGTGGACATTGCGAACCC | + |
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Preference number: 4 (lower is better) Translates to: YLQQRPYKGKGVCGTFNKYRESP*CGHCEP Trigger: GGGTTCGCAATGTCCACACCACGGACTTTCCCGGTA...TTTATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | TATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATAAATATCCAGCCGAGCATTaGCCACCCTGGCCACCTTTT | + |
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Preference number: 4 (lower is better) Translates to: YLQQRPYKGKGVCGTFNKYPAEH*PPWPPF Trigger: AAAAGGTGGCCAGGGTGGCCAATGCTCGGCTGGATA...TTTATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR GCA 90 bp | AATGTATTGACTGGAAATGAGACTGGAAAGGGACCTCTAGTAACAGCACAGCAGATGCCCTTGACGCAATaGATCATCAAGTCAATTTCC | + |
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Preference number: 4 (lower is better) Translates to: NVLTGNETGKGPLVTAQQMPLTQ*IIKSIS Trigger: GGAAATTGACTTGATGATGCATTGCGTCAAGGGCAT...CTGCTGTGCTGTTACTAGAGGTCCCTTTCCAGTCTCATTTCCAGTCAATACATT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | CAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAACGGATTGTGCCCTCTaGGAAGACATCAGCCTGATT | + |
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Preference number: 4 (lower is better) Translates to: QFIYNNGLTKAKVSVAHLTDCAL*EDISLI Trigger: AATCAGGCTGATGTCTTCCCAGAGGGCACAATCCGT...TAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | ATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATCACCAACACATCTGGTaGCAAAACTCCAGTAGACTC | + |
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Preference number: 4 (lower is better) Translates to: IYLQQRPYKGKGVCGTFNHQHIW*QNSSRL Trigger: GAGTCTACTGGAGTTTTGCCACCAGATGTGTTGGTG...ATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR GCA 90 bp | CAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTATCAGTCCATCTCAACTaGATCCAGTTCATCCAAGAA | + |
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Preference number: 4 (lower is better) Translates to: QFIYNNGLTKAKVSVAHLSVHLN*IQFIQE Trigger: TTCTTGGATGAACTGGATGCAGTTGAGATGGACTGA...TAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CCA 90 bp | TATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATAAACCTTCCTCCTCTCCTTaGTTCCGATATTCAAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: YLQQRPYKGKGVCGTFNKPSSSP*FRYSKR Trigger: TCTCTTTGAATATCGGAACCAAGGAGAGGAGGAAGG...TTTATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS TCA 90 bp | GGCTCAGCTCCTCAGCCGCTTCTCCTTCCACAGGCTCAAGCAGAGTaGTGGCCGGTAGCAGTCTGTAGCTGGCTGTGGCCACTGGTGAGA | + |
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Preference number: 5 (lower is better) Translates to: GSAPQPLLLPQAQAE*WPVAVCSWLWPLVR Trigger: TCTCACCAGTGGCCACAGCCAGCTACAGACTGCTACCGGCCATCACTCTGCTTGAGCCTGTGGAAGGAGAAGCGGCTGAGGAGCTGAGCC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS GCA 90 bp | TGGTCCCGAACCCGGGCAAGCCGCACAGCCTTCTTGAGTTTCTCATaGCGGAAGATTTCCCTGCTGAAGGTATCCAGCCGAGCATTGGCC | + |
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Preference number: 5 (lower is better) Translates to: WSRTRASRTAFLSFS*RKISLLKVSSRALA Trigger: GGCCAATGCTCGGCTGGATACCTTCAGCAGGGAAATCTTCCGGCATGAGAAACTCAAGAAGGCTGTGCGGCTTGCCCGGGTTCGGGACCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS CCA 90 bp | TTCCTGGCCAGGCCGAAGCTGAGCGATGAGGATGTCGTCGTGCACTaGACGGATTGTGCCCTCTGGGAAGACATCAGCCTGATTTCCCAA | + |
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Preference number: 5 (lower is better) Translates to: FLARPKLSDEDVVVH*TDCALWEDISLISQ Trigger: TTGGGAAATCAGGCTGATGTCTTCCCAGAGGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS CCA 90 bp | CCACCCATCCCCCTGCCTCAGCTAACAGGATTCTCCGGAAAGCATTaGCGATGGCAGCATCAATCCCCACCATGTCGAACTCCAGCGTGT | + |
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Preference number: 5 (lower is better) Translates to: PPIPLPQLTGFSGKH*RWQHQSPPCRTPAC Trigger: ACACGCTGGAGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGCAGGGGGATGGGTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142706.9 |
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| CDS TCA 90 bp | TGGGGTCTGAGGAATCCTTGGCAGCATTGGGGTTCCTGGTACACCTaGCCTGCAGCCGGAACTGCAGCGTGTCTATCTCTGTTCCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: WGLRNPWQHWGSWYT*PAAGTAACLSLFLP Trigger: AGGAAGGAACAGAGATAGACACGCTGCAGTTCCGGCTGCAGGTCAGGTGTACCAGGAACCCCAATGCTGCCAAGGATTCCTCAGACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS GCA 90 bp | TTGGCAGCATTGGGGTTCCTGGTACACCTGACCTGCAGCCGGAACTaGAGCGTGTCTATCTCTGTTCCTTCCTCCTCTCCTTGGTTCCGA | + |
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Preference number: 5 (lower is better) Translates to: LAALGFLVHLTCSRN*SVSISVPSSSPWFR Trigger: TCGGAACCAAGGAGAGGAGGAAGGAACAGAGATAGACACGCTGCAGTTCCGGCTGCAGGTCAGGTGTACCAGGAACCCCAATGCTGCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS GCA 90 bp | GTGTTGTTATACACCAAGACCTTCTCCACGGCCATTGTCGGCACCTaGCCAAGGAGGCAAAGCAGACAACTGACCTCCACCCATCCCCCT | + |
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Preference number: 5 (lower is better) Translates to: VLLYTKTFSTAIVGT*PRRQSRQLTSTHPP Trigger: AGGGGGATGGGTGGAGGTCAGTTGTCTGCTTTGCCTCCTTGGGCAGGTGCCGACAATGGCCGTGGAGAAGGTCTTGGTGTATAACAACAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142706.9 |
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| CDS CCA 90 bp | CGGCCATTGTCGGCACCTCAGCTAACAGGATTCTCCGGAAAGCATTaGCGATGGCAGCATCAATCCCCACCATGTCGAACTCCAGCGTGT | + |
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Preference number: 5 (lower is better) Translates to: RPLSAPQLTGFSGKH*RWQHQSPPCRTPAC Trigger: ACACGCTGGAGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGTGCCGACAATGGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000173232.2 |
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| CDS TCA 90 bp | CTTGGTTCCGATATTCAAAGAGACGAGGATCAGCGAGGATGGGGATaGGCCCCAGGCGGTGAGCAAGGATCTCATCCTGGACTATGGACG | + |
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Preference number: 5 (lower is better) Translates to: LGSDIQRDEDQRGWG*APGGEQGSHPGLWT Trigger: CGTCCATAGTCCAGGATGAGATCCTTGCTCACCGCCTGGGGCTCATCCCCATCCTCGCTGATCCTCGTCTCTTTGAATATCGGAACCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS GCA 90 bp | TCTGAGGAATCCTTGGCAGCATTGGGGTTCCTGGTACACCTGACCTaGAGCCGGAACTGCAGCGTGTCTATCTCTGTTCCTTCCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: SEESLAALGFLVHLT*SRNCSVSISVPSSS Trigger: AGAGGAGGAAGGAACAGAGATAGACACGCTGCAGTTCCGGCTGCAGGTCAGGTGTACCAGGAACCCCAATGCTGCCAAGGATTCCTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS CCA 90 bp | CTGAGCGATGAGGATGTCGTCGTGCACTGGACGGATTGTGCCCTCTaGGAAGACATCAGCCTGATTTCCCAAGGGGACCCATGTCATATG | + |
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Preference number: 5 (lower is better) Translates to: LSDEDVVVHWTDCAL*EDISLISQGDPCHM Trigger: CATATGACATGGGTCCCCTTGGGAAATCAGGCTGATGTCTTCCCAGAGGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS TCA 90 bp | TCAAAGAGACGAGGATCAGCGAGGATGGGGATGAGCCCCAGGCGGTaGGCAAGGATCTCATCCTGGACTATGGACGTGTTGTTATACACC | + |
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Preference number: 5 (lower is better) Translates to: SKRRGSARMGMSPRR*ARISSWTMDVLLYT Trigger: GGTGTATAACAACACGTCCATAGTCCAGGATGAGATCCTTGCTCACCGCCTGGGGCTCATCCCCATCCTCGCTGATCCTCGTCTCTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS TCA 90 bp | AATGCATCATCAAGTCAATTTCCTGGCCAGGCCGAAGCTGAGCGATaGGGATGTCGTCGTGCACTGGACGGATTGTGCCCTCTGGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: NASSSQFPGQAEAER*GCRRALDGLCPLGR Trigger: TCTTCCCAGAGGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCAGGAAATTGACTTGATGATGCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS TCA 90 bp | TTGACGCAATGCATCATCAAGTCAATTTCCTGGCCAGGCCGAAGCTaGGCGATGAGGATGTCGTCGTGCACTGGACGGATTGTGCCCTCT | + |
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Preference number: 5 (lower is better) Translates to: LTQCIIKSISWPGRS*AMRMSSCTGRIVPS Trigger: AGAGGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCAGGAAATTGACTTGATGATGCATTGCGTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS CCA 90 bp | ATCCCCCTGCCTCAGCTAACAGGATTCTCCGGAAAGCATTGGCGATaGCAGCATCAATCCCCACCATGTCGAACTCCAGCGTGTCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: IPLPQLTGFSGKHWR*QHQSPPCRTPACLH Trigger: ATGAAGACACGCTGGAGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGCAGGGGGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142706.9 |
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| CDS GCA 90 bp | GCATCAATCCCCACCATGTCGAACTCCAGCGTGTCTTCATCCATTTaGACCACGTCCACACGGAAATTCTTCTCGAAGCGGTTCTGGTCC | + |
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Preference number: 5 (lower is better) Translates to: ASIPTMSNSSVSSSI*TTSTRKFFSKRFWS Trigger: GGACCAGAACCGCTTCGAGAAGAATTTCCGTGTGGACGTGGTGCAAATGGATGAAGACACGCTGGAGTTCGACATGGTGGGGATTGATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000142706.9 ENSMUST00000173232.2 |
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| CDS CCA 90 bp | TTGTCGGCACCTCAGCTAACAGGATTCTCCGGAAAGCATTGGCGATaGCAGCATCAATCCCCACCATGTCGAACTCCAGCGTGTCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: LSAPQLTGFSGKHWR*QHQSPPCRTPACLH Trigger: ATGAAGACACGCTGGAGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGTGCCGACAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000173232.2 |
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| CDS-3UTR CAA 90 bp | CAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAGTATCCAGCCGAGCATaGGCCACCCTGGCCACCTTT | + |
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Preference number: 5 (lower is better) Translates to: QFIYNNGLTKAKVSVAHLVSSRA*ATLATF Trigger: AAAGGTGGCCAGGGTGGCCAATGCTCGGCTGGATAC...TAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CAA 90 bp | TATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATAAACGTGCACTGGACGGATaGTGCCCTCTGGGAAGACAT | + |
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Preference number: 5 (lower is better) Translates to: YLQQRPYKGKGVCGTFNKRALDG*CPLGRH Trigger: ATGTCTTCCCAGAGGGCACAATCCGTCCAGTGCACG...TTTATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CAA 90 bp | GAGCAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTCCTTCCTCCTCTCCTaGGTTCCGATATTCAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: EQFIYNNGLTKAKVSVAHSFLLS*VPIFKE Trigger: CTCTTTGAATATCGGAACCAAGGAGAGGAGGAAGGA...ATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CAA 90 bp | CAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAGCCACTGGTGAGAACTaGGCATGGTCTTTGCCAATG | + |
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Preference number: 5 (lower is better) Translates to: QFIYNNGLTKAKVSVAHLATGEN*AWSLPM Trigger: CATTGGCAAAGACCATGCCAAGTTCTCACCAGTGGC...TAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CAA 90 bp | CAATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTATTCCCCATCAGGATCTaGATGGCTTCACTCACCAAC | + |
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Preference number: 5 (lower is better) Translates to: QFIYNNGLTKAKVSVAHLFPIRI*MASLTN Trigger: GTTGGTGAGTGAAGCCATCAAGATCCTGATGGGGAA...TAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS-3UTR CAA 90 bp | ATTTATTTACAACAACGGCCTTACAAAGGCAAAGGTGTCTGTGGCACATTTAATATTCTCCGGAAAGCATaGGCGATGGCAGCATCAATC | + |
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Preference number: 5 (lower is better) Translates to: IYLQQRPYKGKGVCGTFNILRKA*AMAASI Trigger: GATTGATGCTGCCATCGCCAATGCTTTCCGGAGAAT...ATTAAATGTGCCACAGACACCTTTGCCTTTGTAAGGCCGTTGTTGTAAATAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000087026.13 |
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| CDS TCA 72 bp | CCTCAGCCGCTTCTCCTTCCACAGGCTCAAGCAGAGTaGTGGCCGGTAGCAGTCTGTAGCTGGCTGTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: PQPLLLPQAQAE*WPVAVCSWLWP Trigger: TGGCCACAGCCAGCTACAGACTGCTACCGGCCATCACTCTGCTTGAGCCTGTGGAAGGAGAAGCGGCTGAGG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS TCA 72 bp | TTGTCGGCACCTGCCCAAGGAGGCAAAGCAGACAACTaGCCTCCACCCATCCCCCTGCCTCAGCTAACAGGA | + |
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Preference number: 6 (lower is better) Translates to: LSAPAQGGKADN*PPPIPLPQLTG Trigger: TCCTGTTAGCTGAGGCAGGGGGATGGGTGGAGGTCAGTTGTCTGCTTTGCCTCCTTGGGCAGGTGCCGACAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142706.9 |
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| CDS CCA 72 bp | AGGCCGAAGCTGAGCGATGAGGATGTCGTCGTGCACTaGACGGATTGTGCCCTCTGGGAAGACATCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: RPKLSDEDVVVH*TDCALWEDISL Trigger: CAGGCTGATGTCTTCCCAGAGGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS CCA 72 bp | ACTTCCTCCACCTCAATCACGCCAGGGGAGAAACACTaGCTCAGCTCCTCAGCCGCTTCTCCTTCCACAGGC | + |
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Preference number: 6 (lower is better) Translates to: TSSTSITPGEKH*LSSSAASPSTG Trigger: GCCTGTGGAAGGAGAAGCGGCTGAGGAGCTGAGCCAGTGTTTCTCCCCTGGCGTGATTGAGGTGGAGGAAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS CCA 72 bp | GAGGATGTCGTCGTGCACTGGACGGATTGTGCCCTCTaGGAAGACATCAGCCTGATTTCCCAAGGGGACCCA | + |
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Preference number: 6 (lower is better) Translates to: EDVVVHWTDCAL*EDISLISQGDP Trigger: TGGGTCCCCTTGGGAAATCAGGCTGATGTCTTCCCAGAGGGCACAATCCGTCCAGTGCACGACGACATCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS TCA 72 bp | TCAAGTCAATTTCCTGGCCAGGCCGAAGCTGAGCGATaGGGATGTCGTCGTGCACTGGACGGATTGTGCCCT | + |
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Preference number: 6 (lower is better) Translates to: SSQFPGQAEAER*GCRRALDGLCP Trigger: AGGGCACAATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCAGGAAATTGACTTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS GCA 72 bp | TTGGGGTTCCTGGTACACCTGACCTGCAGCCGGAACTaGAGCGTGTCTATCTCTGTTCCTTCCTCCTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LGFLVHLTCSRN*SVSISVPSSSP Trigger: AGGAGAGGAGGAAGGAACAGAGATAGACACGCTGCAGTTCCGGCTGCAGGTCAGGTGTACCAGGAACCCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS GCA 72 bp | TCCTTGGCAGCATTGGGGTTCCTGGTACACCTGACCTaGAGCCGGAACTGCAGCGTGTCTATCTCTGTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SLAALGFLVHLT*SRNCSVSISVP Trigger: AGGAACAGAGATAGACACGCTGCAGTTCCGGCTGCAGGTCAGGTGTACCAGGAACCCCAATGCTGCCAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS GCA 72 bp | ACCCGGGCAAGCCGCACAGCCTTCTTGAGTTTCTCATaGCGGAAGATTTCCCTGCTGAAGGTATCCAGCCGA | + |
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Preference number: 6 (lower is better) Translates to: TRASRTAFLSFS*RKISLLKVSSR Trigger: TCGGCTGGATACCTTCAGCAGGGAAATCTTCCGGCATGAGAAACTCAAGAAGGCTGTGCGGCTTGCCCGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS CAA 90 bp | GAAGGTATCCAGCCGAGCATTGGCCACCCTGGCCACCTTTTTACCTaGTACTTCCTCCACCTCAATCACGCCAGGGGAGAAACACTGGCT | + |
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Preference number: 6 (lower is better) Translates to: EGIQPSIGHPGHLFT*YFLHLNHARGETLA Trigger: AGCCAGTGTTTCTCCCCTGGCGTGATTGAGGTGGAGGAAGTACAAGGTAAAAAGGTGGCCAGGGTGGCCAATGCTCGGCTGGATACCTTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS TCA 72 bp | GATATTCAAAGAGACGAGGATCAGCGAGGATGGGGATaGGCCCCAGGCGGTGAGCAAGGATCTCATCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: DIQRDEDQRGWG*APGGEQGSHPG Trigger: TCCAGGATGAGATCCTTGCTCACCGCCTGGGGCTCATCCCCATCCTCGCTGATCCTCGTCTCTTTGAATATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS CCA 72 bp | CCTCAGCTAACAGGATTCTCCGGAAAGCATTGGCGATaGCAGCATCAATCCCCACCATGTCGAACTCCAGCG | + |
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Preference number: 6 (lower is better) Translates to: PQLTGFSGKHWR*QHQSPPCRTPA Trigger: CGCTGGAGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000142706.9 ENSMUST00000173232.2 |
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| CDS CCA 72 bp | GCCCCAGGCGGTGAGCAAGGATCTCATCCTGGACTATaGACGTGTTGTTATACACCAAGACCTTCTCCACGG | + |
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Preference number: 6 (lower is better) Translates to: APGGEQGSHPGL*TCCYTPRPSPR Trigger: CCGTGGAGAAGGTCTTGGTGTATAACAACACGTCCATAGTCCAGGATGAGATCCTTGCTCACCGCCTGGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS CCA 72 bp | CCCCTGCCTCAGCTAACAGGATTCTCCGGAAAGCATTaGCGATGGCAGCATCAATCCCCACCATGTCGAACT | + |
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Preference number: 6 (lower is better) Translates to: PLPQLTGFSGKH*RWQHQSPPCRT Trigger: AGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGCAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142706.9 |
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| CDS TCA 72 bp | TGCATCATCAAGTCAATTTCCTGGCCAGGCCGAAGCTaGGCGATGAGGATGTCGTCGTGCACTGGACGGATT | + |
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Preference number: 6 (lower is better) Translates to: CIIKSISWPGRS*AMRMSSCTGRI Trigger: AATCCGTCCAGTGCACGACGACATCCTCATCGCTCAGCTTCGGCCTGGCCAGGAAATTGACTTGATGATGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS GCA 72 bp | CCCACCATGTCGAACTCCAGCGTGTCTTCATCCATTTaGACCACGTCCACACGGAAATTCTTCTCGAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: PTMSNSSVSSSI*TTSTRKFFSKR Trigger: CCGCTTCGAGAAGAATTTCCGTGTGGACGTGGTGCAAATGGATGAAGACACGCTGGAGTTCGACATGGTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000142706.9 ENSMUST00000173232.2 |
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| CDS CCA 72 bp | TCGGCACCTCAGCTAACAGGATTCTCCGGAAAGCATTaGCGATGGCAGCATCAATCCCCACCATGTCGAACT | + |
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Preference number: 6 (lower is better) Translates to: SAPQLTGFSGKH*RWQHQSPPCRT Trigger: AGTTCGACATGGTGGGGATTGATGCTGCCATCGCCAATGCTTTCCGGAGAATCCTGTTAGCTGAGGTGCCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000173232.2 |
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| CDS CAA 72 bp | CCCCACCATGTCGAACTCCAGCGTGTCTTCATCCATTaGCACCACGTCCACACGGAAATTCTTCTCGAAGCG | + |
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Preference number: 6 (lower is better) Translates to: PHHVELQRVFIH*HHVHTEILLEA Trigger: CGCTTCGAGAAGAATTTCCGTGTGGACGTGGTGCAAATGGATGAAGACACGCTGGAGTTCGACATGGTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000142706.9 ENSMUST00000173232.2 |
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| CDS CAA 72 bp | CGGAAGATTTCCCTGCTGAAGGTATCCAGCCGAGCATaGGCCACCCTGGCCACCTTTTTACCTTGTACTTCC | + |
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Preference number: 6 (lower is better) Translates to: RKISLLKVSSRA*ATLATFLPCTS Trigger: GGAAGTACAAGGTAAAAAGGTGGCCAGGGTGGCCAATGCTCGGCTGGATACCTTCAGCAGGGAAATCTTCCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS CAA 90 bp | CAGCCGGAACTGCAGCGTGTCTATCTCTGTTCCTTCCTCCTCTCCTaGGTTCCGATATTCAAAGAGACGAGGATCAGCGAGGATGGGGAT | + |
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Preference number: 6 (lower is better) Translates to: QPELQRVYLCSFLLS*VPIFKETRISEDGD Trigger: ATCCCCATCCTCGCTGATCCTCGTCTCTTTGAATATCGGAACCAAGGAGAGGAGGAAGGAACAGAGATAGACACGCTGCAGTTCCGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS CAA 90 bp | TTCTCATGCCGGAAGATTTCCCTGCTGAAGGTATCCAGCCGAGCATaGGCCACCCTGGCCACCTTTTTACCTTGTACTTCCTCCACCTCA | + |
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Preference number: 6 (lower is better) Translates to: FSCRKISLLKVSSRA*ATLATFLPCTSSTS Trigger: TGAGGTGGAGGAAGTACAAGGTAAAAAGGTGGCCAGGGTGGCCAATGCTCGGCTGGATACCTTCAGCAGGGAAATCTTCCGGCATGAGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS CAA 90 bp | AGCATCAATCCCCACCATGTCGAACTCCAGCGTGTCTTCATCCATTaGCACCACGTCCACACGGAAATTCTTCTCGAAGCGGTTCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: SINPHHVELQRVFIH*HHVHTEILLEAVLV Trigger: GACCAGAACCGCTTCGAGAAGAATTTCCGTGTGGACGTGGTGCAAATGGATGAAGACACGCTGGAGTTCGACATGGTGGGGATTGATGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000142706.9 ENSMUST00000173232.2 |
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| CDS CAA 90 bp | GCATCCAGTTCATCCAAGAACCGCCGGCACTTCCCCATCAGGATCTaGATGGCTTCACTCACCAACACATCTGGTGGCAAAACTCCAGTA | + |
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Preference number: 6 (lower is better) Translates to: ASSSSKNRRHFPIRI*MASLTNTSGGKTPV Trigger: TACTGGAGTTTTGCCACCAGATGTGTTGGTGAGTGAAGCCATCAAGATCCTGATGGGGAAGTGCCGGCGGTTCTTGGATGAACTGGATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS GCA 72 bp | AACTTGGCATGGTCTTTGCCAATGCCCTTGACGCAATaGATCATCAAGTCAATTTCCTGGCCAGGCCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: NLAWSLPMPLTQ*IIKSISWPGRS Trigger: GCTTCGGCCTGGCCAGGAAATTGACTTGATGATGCATTGCGTCAAGGGCATTGGCAAAGACCATGCCAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS CAA 72 bp | ACGTGTTGTTATACACCAAGACCTTCTCCACGGCCATaGTCGGCACCTCAGCTAACAGGATTCTCCGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: TCCYTPRPSPRP*SAPQLTGFSGK Trigger: CTTTCCGGAGAATCCTGTTAGCTGAGGTGCCGACAATGGCCGTGGAGAAGGTCTTGGTGTATAACAACACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000173232.2 |
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| CDS CAA 72 bp | CTGCAGCGTGTCTATCTCTGTTCCTTCCTCCTCTCCTaGGTTCCGATATTCAAAGAGACGAGGATCAGCGAG | + |
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Preference number: 6 (lower is better) Translates to: LQRVYLCSFLLS*VPIFKETRISE Trigger: CTCGCTGATCCTCGTCTCTTTGAATATCGGAACCAAGGAGAGGAGGAAGGAACAGAGATAGACACGCTGCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 ENSMUST00000173349.8 |
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| CDS CAA 72 bp | ACTGGTGAGAACTTGGCATGGTCTTTGCCAATGCCCTaGACGCAATGCATCATCAAGTCAATTTCCTGGCCA | + |
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Preference number: 6 (lower is better) Translates to: TGENLAWSLPMP*TQCIIKSISWP Trigger: TGGCCAGGAAATTGACTTGATGATGCATTGCGTCAAGGGCATTGGCAAAGACCATGCCAAGTTCTCACCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 ENSMUST00000142706.9 |
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| CDS CCA 72 bp | CATCAGGATCTTGATGGCTTCACTCACCAACACATCTaGTGGCAAAACTCCAGTAGACTCCACAGAAAAGAT | + |
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Preference number: 6 (lower is better) Translates to: HQDLDGFTHQHI*WQNSSRLHRKD Trigger: ATCTTTTCTGTGGAGTCTACTGGAGTTTTGCCACCAGATGTGTTGGTGAGTGAAGCCATCAAGATCCTGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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| CDS CCA 72 bp | CAGGATCTTGATGGCTTCACTCACCAACACATCTGGTaGCAAAACTCCAGTAGACTCCACAGAAAAGATATA | + |
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Preference number: 6 (lower is better) Translates to: QDLDGFTHQHIW*QNSSRLHRKDI Trigger: TATATCTTTTCTGTGGAGTCTACTGGAGTTTTGCCACCAGATGTGTTGGTGAGTGAAGCCATCAAGATCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087026.13 ENSMUST00000124655.8 |
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