Pregenerated sensors for POLE4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030042Ensembl transcript IDs: ENSMUST00000095786.6, ENSMUST00000160281.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAAGAGTAAGAAGATTGTGTACATGCGCAGACTTTCTCCAAAGCTaGGGCTTACAGAGGGGAAAGGTGACAGATGCAGCCAAGGCTCAG | + |
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Preference number: 1 (lower is better) Translates to: KRVRRLCTCADFLQS*GLQRGKVTDAAKAQ Trigger: CTGAGCCTTGGCTGCATCTGTCACCTTTCCCCTCTGTAAGCCTCAGCTTTGGAGAAAGTCTGCGCATGTACACAATCTTCTTACTCTTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 90 bp | GAAAAGGAAAGGAAGATACTGTTCCATGTGCACAATGTTCCAGGCTaGGAACACTGTTACAAAGTTCTGGAGGCCAATGATGGTGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: EKERKILFHVHNVPG*EHCYKVLEANDGEG Trigger: ACCTTCACCATCATTGGCCTCCAGAACTTTGTAACAGTGTTCTCAGCCTGGAACATTGTGCACATGGAACAGTATCTTCCTTTCCTTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 90 bp | GTCACAGGGCAAGAGCAAAGGCAATATAAAACACAGGAAAGAAGCTaGACAAAGACCTTTTATTCTAGTCTGTGCTCATTAAGCCAGCTA | + |
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Preference number: 1 (lower is better) Translates to: VTGQEQRQYKTQERS*TKTFYSSLCSLSQL Trigger: TAGCTGGCTTAATGAGCACAGACTAGAATAAAAGGTCTTTGTTCAGCTTCTTTCCTGTGTTTTATATTGCCTTTGCTCTTGCCCTGTGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR CCA 90 bp | ACTTATTACTCAAGTTTCACTCTTCTTTCAAATCTGGAAGCTGAGTaGTCAGCCCCTCTTTCTCTGCTATGGTTGATAGTCTTCAAAAGT | + |
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Preference number: 1 (lower is better) Translates to: TYYSSFTLLSNLEAE*SAPLSLLWLIVFKS Trigger: ACTTTTGAAGACTATCAACCATAGCAGAGAAAGAGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGAAACTTGAGTAATAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| 3UTR TCA 90 bp | TATTACTTATTACTCAAGTTTCACTCTTCTTTCAAATCTGGAAGCTaGGTGGTCAGCCCCTCTTTCTCTGCTATGGTTGATAGTCTTCAA | + |
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Preference number: 1 (lower is better) Translates to: YYLLLKFHSSFKSGS*VVSPSFSAMVDSLQ Trigger: TTGAAGACTATCAACCATAGCAGAGAAAGAGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGAAACTTGAGTAATAAGTAATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| 3UTR TCA 90 bp | ACACATGAATTATACTTGAATAAAACTGTTGGGACCACATCGATTTaGCTTCTAAGGAGAAGAGGTATCCCATATATTATCGATCCACAT | + |
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Preference number: 1 (lower is better) Translates to: THELYLNKTVGTTSI*LLRRRGIPYIIDPH Trigger: ATGTGGATCGATAATATATGGGATACCTCTTCTCCTTAGAAGTCAAATCGATGTGGTCCCAACAGTTTTATTCAAGTATAATTCATGTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR TCA 90 bp | GATCACATGGGTTCCCAGTCACAGGGCAAGAGCAAAGGCAATATAAAACACAGGTACAGAGGGGAAAGGTaGCAGATGCAGCCAAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: DHMGSQSQGKSKGNIKHRYRGER*QMQPRL Trigger: GAGCCTTGGCTGCATCTGTCACCTTTCCCCTCTGTA...CCTGTGTTTTATATTGCCTTTGCTCTTGCCCTGTGACTGGGAACCCATGTGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCATAAATGTCAGTCAGTTTCTGGTAACCCTGAAATGTCAGTTTTGGGTGGACTGTGCCTGATCACATaGGTTCCCAGTCACAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: SHKCQSVSGNPEMSVLGGLCLIT*VPSHRA Trigger: TGCCCTGTGACTGGGAACCCATGTGATCAGGCACAG...TCCACCCAAAACTGACATTTCAGGGTTACCAGAAACTGACTGACATTTATGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR GCA 90 bp | AGCCATAAATGTCAGTCAGTTTCTGGTAACCCTGAAATGTCAGTTTTGGGTGGAGATGAGGAAAGTCTGTaGCTGATCACATGGGTTCCC | + |
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Preference number: 2 (lower is better) Translates to: SHKCQSVSGNPEMSVLGGDEESL*LITWVP Trigger: GGGAACCCATGTGATCAGGCACAGACTTTCCTCATC...TCCACCCAAAACTGACATTTCAGGGTTACCAGAAACTGACTGACATTTATGGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR TCA 90 bp | GAAGATACTGTTCCATGTGCACAATGTTCCAGGCTGAGAACACTGTTACAAAGTGGGACCACATCGATTTaGCTTCTAAGGAGAAGAGGT | + |
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Preference number: 2 (lower is better) Translates to: EDTVPCAQCSRLRTLLQSGTTSI*LLRRRG Trigger: ACCTCTTCTCCTTAGAAGTCAAATCGATGTGGTCCC...ACTTTGTAACAGTGTTCTCAGCCTGGAACATTGTGCACATGGAACAGTATCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR GCA 90 bp | GAAGATACTGTTCCATGTGCACAATGTTCCAGGCTGAGAACACTGTTACAAAGTCAGTCCTTTCATCTCTaGCCCAAACAGCATCAGCTA | + |
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Preference number: 2 (lower is better) Translates to: EDTVPCAQCSRLRTLLQSQSFHL*PKQHQL Trigger: TAGCTGATGCTGTTTGGGGCAGAGATGAAAGGACTG...ACTTTGTAACAGTGTTCTCAGCCTGGAACATTGTGCACATGGAACAGTATCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR CAA 90 bp | GACTTGGTGGAGAACGTTATCCAAGAGCTCTCTGCTTCTTCTATCTaGGGTAAAAAGAGTAAGAAGATTGTGTACATGCGCAGACTTTCT | + |
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Preference number: 2 (lower is better) Translates to: DLVENVIQELSASSI*GKKSKKIVYMRRLS Trigger: AGAAAGTCTGCGCATGTACACAATCTTCTTACTCTTTTTACCCAAGATAGAAGAAGCAGAGAGCTCTTGGATAACGTTCTCCACCAAGTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCATAAATGTCAGTCAGTTTCTGGTAACCCTGAAATGTCAGTTTTGGGTGGAAACGTATTACAGGACTaGATGTATCATTCTAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: SHKCQSVSGNPEMSVLGGNVLQD*MYHSRE Trigger: CTCCCTAGAATGATACATTCAGTCCTGTAATACGTT...TCCACCCAAAACTGACATTTCAGGGTTACCAGAAACTGACTGACATTTATGGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR CCA 90 bp | GAAGATACTGTTCCATGTGCACAATGTTCCAGGCTGAGAACACTGTTACAAAGTCATCCAGGCTTGAATTaGAAGACAGACTCAAGTAAT | + |
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Preference number: 2 (lower is better) Translates to: EDTVPCAQCSRLRTLLQSHPGLN*KTDSSN Trigger: ATTACTTGAGTCTGTCTTCCAATTCAAGCCTGGATG...ACTTTGTAACAGTGTTCTCAGCCTGGAACATTGTGCACATGGAACAGTATCTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR GCA 90 bp | TTATTTTTAACGTATTACAGGACTGAATGTATCATTCTAGGGAGAAGATCCTGCAGAAGATTGTGTACATaGGCAGACTTTCTCCAAAGC | + |
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Preference number: 2 (lower is better) Translates to: LFLTYYRTECIILGRRSCRRLCT*ADFLQS Trigger: GCTTTGGAGAAAGTCTGCGCATGTACACAATCTTCT...GCAGGATCTTCTCCCTAGAATGATACATTCAGTCCTGTAATACGTTAAAAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR CCA 90 bp | TTATTTTTAACGTATTACAGGACTGAATGTATCATTCTAGGGAGAAGATCCTGCCTGCTTCTTCTATCTTaGGTAAAAAGAGTAAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: LFLTYYRTECIILGRRSCLLLLS*VKRVRR Trigger: TCTTCTTACTCTTTTTACCCAAGATAGAAGAAGCAG...GCAGGATCTTCTCCCTAGAATGATACATTCAGTCCTGTAATACGTTAAAAATAA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 72 bp | ACTTTCTCCAAAGCTGAGGCTTACAGAGGGGAAAGGTaGCAGATGCAGCCAAGGCTCAGACCATCCAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: TFSKAEAYRGER*QMQPRLRPSSS Trigger: GGAGCTGGATGGTCTGAGCCTTGGCTGCATCTGTCACCTTTCCCCTCTGTAAGCCTCAGCTTTGGAGAAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 72 bp | GGAGTGGTTGGTAGAAAGATGAGGAAAGTCTGTGCCTaGTCACATGGGTTCCCAGTCACAGGGCAAGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: GVVGRKMRKVCA*SHGFPVTGQEQ Trigger: TTGCTCTTGCCCTGTGACTGGGAACCCATGTGATCAGGCACAGACTTTCCTCATCTTTCTACCAACCACTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 72 bp | AGAAGATTGTGTACATGCGCAGACTTTCTCCAAAGCTaGGGCTTACAGAGGGGAAAGGTGACAGATGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: RRLCTCADFLQS*GLQRGKVTDAA Trigger: GGCTGCATCTGTCACCTTTCCCCTCTGTAAGCCTCAGCTTTGGAGAAAGTCTGCGCATGTACACAATCTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR CCA 72 bp | TGCCCCAAACAGCATCAGCTACATCCAGGCTTGAATTaGAAGACAGACTCAAGTAATGGAAGACTTGGTGGA | + |
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Preference number: 3 (lower is better) Translates to: CPKQHQLHPGLN*KTDSSNGRLGG Trigger: TCCACCAAGTCTTCCATTACTTGAGTCTGTCTTCCAATTCAAGCCTGGATGTAGCTGATGCTGTTTGGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 72 bp | ATCTCTGCCCCAAACAGCATCAGCTACATCCAGGCTTaGATTGGAAGACAGACTCAAGTAATGGAAGACTTG | + |
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Preference number: 3 (lower is better) Translates to: ISAPNSISYIQA*IGRQTQVMEDL Trigger: CAAGTCTTCCATTACTTGAGTCTGTCTTCCAATTCAAGCCTGGATGTAGCTGATGCTGTTTGGGGCAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR CAA 90 bp | AGCCATAAATGTCAGTCAGTTTCTGGTAACCCTGAAATGTCAGTTTTGGGTGGACAGCTACATCCAGGCTaGAATTGGAAGACAGACTCA | + |
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Preference number: 3 (lower is better) Translates to: SHKCQSVSGNPEMSVLGGQLHPG*NWKTDS Trigger: TGAGTCTGTCTTCCAATTCAAGCCTGGATGTAGCTG...TCCACCCAAAACTGACATTTCAGGGTTACCAGAAACTGACTGACATTTATGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 72 bp | AGGAAGATACTGTTCCATGTGCACAATGTTCCAGGCTaGGAACACTGTTACAAAGTTCTGGAGGCCAATGAT | + |
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Preference number: 3 (lower is better) Translates to: RKILFHVHNVPG*EHCYKVLEAND Trigger: ATCATTGGCCTCCAGAACTTTGTAACAGTGTTCTCAGCCTGGAACATTGTGCACATGGAACAGTATCTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR CCA 72 bp | TCAAGTTTCACTCTTCTTTCAAATCTGGAAGCTGAGTaGTCAGCCCCTCTTTCTCTGCTATGGTTGATAGTC | + |
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Preference number: 3 (lower is better) Translates to: SSFTLLSNLEAE*SAPLSLLWLIV Trigger: GACTATCAACCATAGCAGAGAAAGAGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGAAACTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| 3UTR GCA 72 bp | TACAGGACTGAATGTATCATTCTAGGGAGAAGATCCTaGAGACTCTATCCTAAGAGATCTACACTGCAGAAC | + |
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Preference number: 3 (lower is better) Translates to: YRTECIILGRRS*RLYPKRSTLQN Trigger: GTTCTGCAGTGTAGATCTCTTAGGATAGAGTCTGCAGGATCTTCTCCCTAGAATGATACATTCAGTCCTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR-3UTR CAA 90 bp | TGGAAGACAGACTCAAGTAATGGAAGACTTGGTGGAGAACGTTATCCAAGAGCTTCTGCTTCTTCTATCTaGGGTAAAAAGAGTAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: WKTDSSNGRLGGERYPRASASSI*GKKSKK Trigger: CTTCTTACTCTTTTTACCCAAGATAGAAGAAGCAGA...AGCTCTTGGATAACGTTCTCCACCAAGTCTTCCATTACTTGAGTCTGTCTTCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR CCA 72 bp | AGAACGTTATCCAAGAGCTCTCTGCTTCTTCTATCTTaGGTAAAAAGAGTAAGAAGATTGTGTACATGCGCA | + |
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Preference number: 3 (lower is better) Translates to: RTLSKSSLLLLS*VKRVRRLCTCA Trigger: TGCGCATGTACACAATCTTCTTACTCTTTTTACCCAAGATAGAAGAAGCAGAGAGCTCTTGGATAACGTTCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR TCA 72 bp | TTATACTTGAATAAAACTGTTGGGACCACATCGATTTaGCTTCTAAGGAGAAGAGGTATCCCATATATTATC | + |
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Preference number: 3 (lower is better) Translates to: LYLNKTVGTTSI*LLRRRGIPYII Trigger: GATAATATATGGGATACCTCTTCTCCTTAGAAGTCAAATCGATGTGGTCCCAACAGTTTTATTCAAGTATAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS-3UTR GCA 90 bp | TCACTCTTCTTTCAAATCTGGAAGCTGAGTGGTCAGCCCCTCTTTCTCTGCTATGTCGGGGCTTGGGCCTaGGAAGCCGCTGCCTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: SLFFQIWKLSGQPLFLCYVGAWA*EAAASP Trigger: AGGGGAGGCAGCGGCTTCGCAGGCCCAAGCCCCGAC...ATAGCAGAGAAAGAGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| CDS-3UTR GCA 90 bp | GAAGATACTGTTCCATGTGCACAATGTTCCAGGCTGAGAACACTGTTACAAAGTGTCGGGGCTTGGGCCTaGGAAGCCGCTGCCTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: EDTVPCAQCSRLRTLLQSVGAWA*EAAASP Trigger: AGGGGAGGCAGCGGCTTCGCAGGCCCAAGCCCCGAC...ACTTTGTAACAGTGTTCTCAGCCTGGAACATTGTGCACATGGAACAGTATCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS-3UTR GCA 90 bp | TGGAAGACAGACTCAAGTAATGGAAGACTTGGTGGAGAACGTTATCCAAGAGCTCGTTACGTCAGGGTCTaGCTTCACCAAGGCCTTTAC | + |
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Preference number: 4 (lower is better) Translates to: WKTDSSNGRLGGERYPRARYVRV*LHQGLY Trigger: GTAAAGGCCTTGGTGAAGGCAGACCCTGACGTAACG...AGCTCTTGGATAACGTTCTCCACCAAGTCTTCCATTACTTGAGTCTGTCTTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS-3UTR GCA 90 bp | TATTACTCAAGTTTCACTCTTCTTTCAAATCTGGAAGCTGAGTGGTCAGCCCCTCGTTACGTCAGGGTCTaGCTTCACCAAGGCCTTTAC | + |
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Preference number: 4 (lower is better) Translates to: YYSSFTLLSNLEAEWSAPRYVRV*LHQGLY Trigger: GTAAAGGCCTTGGTGAAGGCAGACCCTGACGTAACG...AGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGAAACTTGAGTAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| 3UTR CAA 72 bp | CATCTCTGCCCCAAACAGCATCAGCTACATCCAGGCTaGAATTGGAAGACAGACTCAAGTAATGGAAGACTT | + |
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Preference number: 4 (lower is better) Translates to: HLCPKQHQLHPG*NWKTDSSNGRL Trigger: AAGTCTTCCATTACTTGAGTCTGTCTTCCAATTCAAGCCTGGATGTAGCTGATGCTGTTTGGGGCAGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| 3UTR CAA 72 bp | GAGAACGTTATCCAAGAGCTCTCTGCTTCTTCTATCTaGGGTAAAAAGAGTAAGAAGATTGTGTACATGCGC | + |
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Preference number: 4 (lower is better) Translates to: ENVIQELSASSI*GKKSKKIVYMR Trigger: GCGCATGTACACAATCTTCTTACTCTTTTTACCCAAGATAGAAGAAGCAGAGAGCTCTTGGATAACGTTCTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS-3UTR GCA 90 bp | TGGAAGACAGACTCAAGTAATGGAAGACTTGGTGGAGAACGTTATCCAAGAGCTATCCACAGCTTCTATTaGATTATCCAAATCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: WKTDSSNGRLGGERYPRAIHSFY*IIQISP Trigger: AGGAGAGATTTGGATAATGCAATAGAAGCTGTGGAT...AGCTCTTGGATAACGTTCTCCACCAAGTCTTCCATTACTTGAGTCTGTCTTCCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS-3UTR CAA 90 bp | TATTACTCAAGTTTCACTCTTCTTTCAAATCTGGAAGCTGAGTGGTCAGCCCCTAGTTTTCCTCTTTCCTaGTTGAGCACAGCAGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: YYSSFTLLSNLEAEWSAPSFPLS*LSTAVG Trigger: GCCTACTGCTGTGCTCAACAAGGAAAGAGGAAAACT...AGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGAAACTTGAGTAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| CDS-3UTR CAA 90 bp | TCAAGTTTCACTCTTCTTTCAAATCTGGAAGCTGAGTGGTCAGCCCCTCTTTCTCATCCACAGCTTCTATaGCATTATCCAAATCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: SSFTLLSNLEAEWSAPLSHPQLL*HYPNLS Trigger: GGAGAGATTTGGATAATGCAATAGAAGCTGTGGATG...AGAAAGAGGGGCTGACCACTCAGCTTCCAGATTTGAAAGAAGAGTGAAACTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160281.8 |
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| CDS-3UTR CAA 90 bp | TTATTTTTAACGTATTACAGGACTGAATGTATCATTCTAGGGAGAAGATCCTGCAGTTTTCCTCTTTCCTaGTTGAGCACAGCAGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: LFLTYYRTECIILGRRSCSFPLS*LSTAVG Trigger: GCCTACTGCTGTGCTCAACAAGGAAAGAGGAAAACT...GCAGGATCTTCTCCCTAGAATGATACATTCAGTCCTGTAATACGTTAAAAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS-3UTR CAA 90 bp | TTATTTTTAACGTATTACAGGACTGAATGTATCATTCTAGGGAGAAGATCCTGCCATCCACAGCTTCTATaGCATTATCCAAATCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: LFLTYYRTECIILGRRSCHPQLL*HYPNLS Trigger: GGAGAGATTTGGATAATGCAATAGAAGCTGTGGATG...GCAGGATCTTCTCCCTAGAATGATACATTCAGTCCTGTAATACGTTAAAAATAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095786.6 |
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| CDS GCA 72 bp | GATGGCTTCCTGTCCCGCCAGCGTTACGTCAGGGTCTaGCTTCACCAAGGCCTTTACTCTCGCCAGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: DGFLSRQRYVRV*LHQGLYSRQRQ Trigger: CTGCCTCTGGCGAGAGTAAAGGCCTTGGTGAAGGCAGACCCTGACGTAACGCTGGCGGGACAGGAAGCCATC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000095786.6 ENSMUST00000160281.8 |
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