Pregenerated sensors for POLD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024854Ensembl transcript IDs: ENSMUST00000025773.5, ENSMUST00000235306.2, ENSMUST00000237518.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCAGGGGTGTGGCGGGTGGGCATCTGGTGGTCATGATTAGGGCGTaGAGGTGCTCAGCTTCACAGGTCCCAGGAGCTTCAGCAGCCTGC | + |
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Preference number: 1 (lower is better) Translates to: VRGVAGGHLVVMIRA*RCSASQVPGASAAC Trigger: GCAGGCTGCTGAAGCTCCTGGGACCTGTGAAGCTGAGCACCTCCACGCCCTAATCATGACCACCAGATGCCCACCCGCCACACCCCTGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR GCA 90 bp | GGTGTGGCGGGTGGGCATCTGGTGGTCATGATTAGGGCGTGGAGGTaGTCAGCTTCACAGGTCCCAGGAGCTTCAGCAGCCTGCTGTTTA | + |
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Preference number: 1 (lower is better) Translates to: GVAGGHLVVMIRAWR*SASQVPGASAACCL Trigger: TAAACAGCAGGCTGCTGAAGCTCCTGGGACCTGTGAAGCTGAGCACCTCCACGCCCTAATCATGACCACCAGATGCCCACCCGCCACACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR TCA 90 bp | GGTCCCAGGAGCTTCAGCAGCCTGCTGTTTAGATGGAGAAGAAGCTaGACCAGGAAGACCTCCACAGTCAGCCTGCTGTTTCTCCAAGGT | + |
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Preference number: 1 (lower is better) Translates to: GPRSFSSLLFRWRRS*TRKTSTVSLLFLQG Trigger: ACCTTGGAGAAACAGCAGGCTGACTGTGGAGGTCTTCCTGGTTCAGCTTCTTCTCCATCTAAACAGCAGGCTGCTGAAGCTCCTGGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR CAA 90 bp | TTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTaGCCACACCGTAGGTCAGGGGTGTGGCGGGTGGGCATCTGGTGG | + |
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Preference number: 2 (lower is better) Translates to: LGYLPTSGLCQPVLD*PHRRSGVWRVGIWW Trigger: CCACCAGATGCCCACCCGCCACACCCCTGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR CCA 90 bp | GATGCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCCAGGGGTGTGGCGGGTaGGCATCTGGTGGTCATGAT | + |
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Preference number: 2 (lower is better) Translates to: DAQGGPFRLSADIWFMPAQGCGG*ASGGHD Trigger: ATCATGACCACCAGATGCCCACCCGCCACACCCCTG...GGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR TCA 90 bp | TGGATTTGCCACACCGTAGGTCAGGGGTGTGGCGGGTGGGCATCTGGTGGTCATAGATGGAGAAGAAGCTaGACCAGGAAGACCTCCACA | + |
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Preference number: 2 (lower is better) Translates to: WICHTVGQGCGGWASGGHRWRRS*TRKTST Trigger: TGTGGAGGTCTTCCTGGTTCAGCTTCTTCTCCATCT...ATGACCACCAGATGCCCACCCGCCACACCCCTGACCTACGGTGTGGCAAATCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR GCA 90 bp | TGGATTTGCCACACCGTAGGTCAGGGGTGTGGCGGGTGGGCATCTGGTGGTCATGGAGCTTCAGCAGCCTaGTGTTTAGATGGAGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: WICHTVGQGCGGWASGGHGASAA*CLDGEE Trigger: TTCTTCTCCATCTAAACAGCAGGCTGCTGAAGCTCC...ATGACCACCAGATGCCCACCCGCCACACCCCTGACCTACGGTGTGGCAAATCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR CCA 90 bp | GGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCAGGGGTGTGGCGGGTaGGCATCTGGTGGTCATGAT | + |
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Preference number: 2 (lower is better) Translates to: GPLGYLPTSGLCQPVLDLQGCGG*ASGGHD Trigger: ATCATGACCACCAGATGCCCACCCGCCACACCCCTG...CAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCTAGATATACCCGTCCCCCACCATCAGCTCATAGAGGTAAGGATCATTATCGAGGGTGGCAGCTCCTaGAGAAGTCCCTGGTTCCCC | + |
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Preference number: 2 (lower is better) Translates to: ALDIPVPHHQLIEVRIIIEGGSS*RSPWFP Trigger: GGGGAACCAGGGACTTCTCCAGGAGCTGCCACCCTC...GATAATGATCCTTACCTCTATGAGCTGATGGTGGGGGACGGGTATATCTAGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| 3UTR-3UTR TCA 90 bp | ATGCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCTTCTCCAAGGTTGGAATaGGCAGAGCAGGCCATGATG | + |
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Preference number: 2 (lower is better) Translates to: MPKVGPLGYLPTSGLCQPSPRLE*AEQAMM Trigger: CATCATGGCCTGCTCTGCTCATTCCAACCTTGGAGA...AGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR TCA 90 bp | AAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGTCTCCAAGGTTGGAATaGGCAGAGCAGGCCATGATG | + |
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Preference number: 2 (lower is better) Translates to: KVGPLGYLPTSGLCQPVLSPRLE*AEQAMM Trigger: CATCATGGCCTGCTCTGCTCATTCCAACCTTGGAGA...CAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR TCA 90 bp | GATGCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCAGATGGAGAAGAAGCTaGACCAGGAAGACCTCCACA | + |
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Preference number: 2 (lower is better) Translates to: DAQGGPFRLSADIWFMPARWRRS*TRKTST Trigger: TGTGGAGGTCTTCCTGGTTCAGCTTCTTCTCCATCT...GGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR GCA 90 bp | GTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCCACACCGTAATTAGGGCGTGGAGGTaGTCAGCTTCACAGGTCCCA | + |
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Preference number: 2 (lower is better) Translates to: VICRHLVYASLCWICHTVIRAWR*SASQVP Trigger: TGGGACCTGTGAAGCTGAGCACCTCCACGCCCTAAT...TACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR CCA 90 bp | GATGCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCCTGTTTCTCCAAGGTTaGAATGAGCAGAGCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: DAQGGPFRLSADIWFMPALFLQG*NEQSRP Trigger: TGGCCTGCTCTGCTCATTCCAACCTTGGAGAAACAG...GGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGCTGTTTCTCCAAGGTTaGAATGAGCAGAGCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: KVGPLGYLPTSGLCQPVLLFLQG*NEQSRP Trigger: TGGCCTGCTCTGCTCATTCCAACCTTGGAGAAACAG...CAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR GCA 90 bp | AGGTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCCACACCGGGAGCTTCAGCAGCCTaGTGTTTAGATGGAGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: RLSADIWFMPACAGFATPGASAA*CLDGEE Trigger: TTCTTCTCCATCTAAACAGCAGGCTGCTGAAGCTCC...CGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR-3UTR TCA 90 bp | GCCCTAGATATACCCGTCCCCCACCATCAGCTCATAGAGGTAAGGATCATTATCCAGACTCTTCTTGCTTaGCAGGAAGGACCGTCTAAG | + |
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Preference number: 2 (lower is better) Translates to: ALDIPVPHHQLIEVRIIIQTLLA*QEGPSK Trigger: CTTAGACGGTCCTTCCTGTCAAGCAAGAAGAGTCTG...GATAATGATCCTTACCTCTATGAGCTGATGGTGGGGGACGGGTATATCTAGGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| 3UTR TCA 72 bp | AGGTCAGGGGTGTGGCGGGTGGGCATCTGGTGGTCATaGTTAGGGCGTGGAGGTGCTCAGCTTCACAGGTCC | + |
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Preference number: 3 (lower is better) Translates to: RSGVWRVGIWWS*LGRGGAQLHRS Trigger: GGACCTGTGAAGCTGAGCACCTCCACGCCCTAATCATGACCACCAGATGCCCACCCGCCACACCCCTGACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR GCA 72 bp | TGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTaGCACACCGTAGGTCAGGGGTGTGGCGGGTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: CRHLVYASLCWI*HTVGQGCGGWA Trigger: TGCCCACCCGCCACACCCCTGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR CCA 72 bp | GTGGCGGGTGGGCATCTGGTGGTCATGATTAGGGCGTaGAGGTGCTCAGCTTCACAGGTCCCAGGAGCTTCA | + |
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Preference number: 3 (lower is better) Translates to: VAGGHLVVMIRA*RCSASQVPGAS Trigger: TGAAGCTCCTGGGACCTGTGAAGCTGAGCACCTCCACGCCCTAATCATGACCACCAGATGCCCACCCGCCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR CCA 72 bp | GTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTaGATTTGCCACACCGTAGGTCAGGGGTGTGGCGGG | + |
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Preference number: 3 (lower is better) Translates to: VICRHLVYASLC*ICHTVGQGCGG Trigger: CCCGCCACACCCCTGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR CCA 72 bp | GCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTaGTTTATGCCAGCCTGTGCTGGATTTGCCACACCG | + |
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Preference number: 3 (lower is better) Translates to: AQGGPFRLSADI*FMPACAGFATP Trigger: CGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| 3UTR GCA 72 bp | GTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATaGCAGCCTGTGCTGGATTTGCCACACCGTAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: VGPLGYLPTSGL*QPVLDLPHRRS Trigger: TGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| CDS-3UTR GCA 90 bp | TGGATTTGCCACACCGTAGGTCAGGGGTGTGGCGGGTGGGCATCTGGTGGTCATGGCTTCAAGCCCATCTaGTCTGCCCGACTCCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: WICHTVGQGCGGWASGGHGFKPI*SARLQR Trigger: GCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCC...ATGACCACCAGATGCCCACCCGCCACACCCCTGACCTACGGTGTGGCAAATCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| 3UTR CAA 72 bp | CTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTaGCCACACCGTAGGTCAGGGGTGTGGCGGGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LPTSGLCQPVLD*PHRRSGVWRVG Trigger: GCCCACCCGCCACACCCCTGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| CDS-3UTR TCA 90 bp | ACCAAGAGGGTGGCAGCTCCTGGAGAAGTCCCTGGTTCCCCTGAAAGCTGTCCCCTGTTTCCTCCTGGCTaGGGGACTGGGTGTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: TKRVAAPGEVPGSPESCPLFPPG*GTGCLP Trigger: GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAG...GGGACAGCTTTCAGGGGAACCAGGGACTTCTCCAGGAGCTGCCACCCTCTTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR TCA 90 bp | CCCACTTCTCCAAGTCAAGGTAGCCCCTACGTAGACCAAGAGGGTGGCAGCTCCGACCTGCATTGGAAGTaGGGGTCTTCAGGGTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: PTSPSQGSPYVDQEGGSSDLHWK*GSSGCA Trigger: GGCACACCCTGAAGACCCTCACTTCCAATGCAGGTC...GGAGCTGCCACCCTCTTGGTCTACGTAGGGGCTACCTTGACTTGGAGAAGTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR GCA 90 bp | GTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCCACACCGTAGTGCCAGCTCTCCCTTaGTGTGCCCAGGGGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: VICRHLVYASLCWICHTVVPALP*CAQGAP Trigger: AGGGGCCCCCTGGGCACAGCAAGGGAGAGCTGGCAC...TACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR GCA 90 bp | GATGCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCCAAGCCCATCTGCTCTaGCCGACTCCAGCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: DAQGGPFRLSADIWFMPAQAHLL*PTPALQ Trigger: CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTG...GGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGCATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR TCA 90 bp | GGAGAAGAAGCTGAACCAGGAAGACCTCCACAGTCAGCCTGCTGTTTCTCCAAGCTGTTTCCTCCTGGCTaGGGGACTGGGTGTCTTCCC | + |
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Preference number: 4 (lower is better) Translates to: GEEAEPGRPPQSACCFSKLFPPG*GTGCLP Trigger: GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAG...CTTGGAGAAACAGCAGGCTGACTGTGGAGGTCTTCCTGGTTCAGCTTCTTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR GCA 90 bp | GAAGGACCGTCTAAGTCTGTTCCCACTTCTCCAAGTCAAGGTAGCCCCTACGTAGGCTTCAAGCCCATCTaGTCTGCCCGACTCCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: EGPSKSVPTSPSQGSPYVGFKPI*SARLQR Trigger: GCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCC...TACGTAGGGGCTACCTTGACTTGGAGAAGTGGGAACAGACTTAGACGGTCCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR GCA 90 bp | CCACCATCAGCTCATAGAGGTAAGGATCATTATCGAGATCTATCTCGAGCCAGAGTGCCAGCTCTCCCTTaGTGTGCCCAGGGGGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: PPSAHRGKDHYRDLSRARVPALP*CAQGAP Trigger: AGGGGCCCCCTGGGCACAGCAAGGGAGAGCTGGCAC...TCTGGCTCGAGATAGATCTCGATAATGATCCTTACCTCTATGAGCTGATGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR GCA 90 bp | GATGCCCAAGGTGGGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCGTACAAGGCCCATACTaGCAGGCCAGGTCAAACTGC | + |
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Preference number: 4 (lower is better) Translates to: DAQGGPFRLSADIWFMPAVQGPY*QARSNC Trigger: GCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTAC...GGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCCCACCTTGGGCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR CCA 90 bp | GTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCCACACCGTATCCTGGCTGAGGGACTaGGTGTCTTCCCCTAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: VICRHLVYASLCWICHTVSWLRD*VSSPSS Trigger: CGAGCTAGGGGAAGACACCCAGTCCCTCAGCCAGGA...TACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR GCA 90 bp | AAGCTGAACCAGGAAGACCTCCACAGTCAGCCTGCTGTTTCTCCAAGGTTGGAACAGGCCAGGTCAAACTaGCTCAGCAGCTCCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: KLNQEDLHSQPAVSPRLEQARSN*LSSSSS Trigger: AGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTG...TTCCAACCTTGGAGAAACAGCAGGCTGACTGTGGAGGTCTTCCTGGTTCAGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR GCA 90 bp | TTCTTGCTTGACAGGAAGGACCGTCTAAGTCTGTTCCCACTTCTCCAAGTCAAGCAAGCCCATCTGCTCTaGCCGACTCCAGCGCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FLLDRKDRLSLFPLLQVKQAHLL*PTPALQ Trigger: CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTG...CTTGACTTGGAGAAGTGGGAACAGACTTAGACGGTCCTTCCTGTCAAGCAAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR CCA 90 bp | GCCCTAGATATACCCGTCCCCCACCATCAGCTCATAGAGGTAAGGATCATTATCTCCTGGCTGAGGGACTaGGTGTCTTCCCCTAGCTCG | + |
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Preference number: 4 (lower is better) Translates to: ALDIPVPHHQLIEVRIIISWLRD*VSSPSS Trigger: CGAGCTAGGGGAAGACACCCAGTCCCTCAGCCAGGA...GATAATGATCCTTACCTCTATGAGCTGATGGTGGGGGACGGGTATATCTAGGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR CCA 90 bp | GGCCCTTTAGGTTATCTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGAGCTCTGTTTCCTCCTaGCTGAGGGACTGGGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: GPLGYLPTSGLCQPVLDLSSVSS*LRDWVS Trigger: AGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCT...CAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAGATAACCTAAAGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025773.5 |
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| CDS-3UTR GCA 90 bp | CCCCACCATCAGCTCATAGAGGTAAGGATCATTATCGAGATCTATCTCGAGCCACAGGCCAGGTCAAACTaGCTCAGCAGCTCCAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PHHQLIEVRIIIEIYLEPQARSN*LSSSSS Trigger: AGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTG...TGGCTCGAGATAGATCTCGATAATGATCCTTACCTCTATGAGCTGATGGTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR CCA 90 bp | TTCTTGCTTGACAGGAAGGACCGTCTAAGTCTGTTCCCACTTCTCCAAGTCAAGAGCTCTGTTTCCTCCTaGCTGAGGGACTGGGTGTCT | + |
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Preference number: 4 (lower is better) Translates to: FLLDRKDRLSLFPLLQVKSSVSS*LRDWVS Trigger: AGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCT...CTTGACTTGGAGAAGTGGGAACAGACTTAGACGGTCCTTCCTGTCAAGCAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237518.2 |
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| CDS-3UTR CAA 90 bp | TGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCCACACCGTAGGTCAGATGCCACAGGCTGCATaGGAAGTGAGGGTCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: CRHLVYASLCWICHTVGQMPQAA*EVRVFR Trigger: CCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCAT...CTGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| CDS-3UTR CAA 90 bp | CTGCCGACATCTGGTTTATGCCAGCCTGTGCTGGATTTGCCACACCGTAGGTCAATGCCACAGGCTGCATaGGAAGTGAGGGTCTTCAGG | + |
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Preference number: 5 (lower is better) Translates to: LPTSGLCQPVLDLPHRRSMPQAA*EVRVFR Trigger: CCTGAAGACCCTCACTTCCAATGCAGCCTGTGGCAT...TGACCTACGGTGTGGCAAATCCAGCACAGGCTGGCATAAACCAGATGTCGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000235306.2 |
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| CDS GCA 72 bp | CGCTGCAGCCTTGTGATACCTGTACAAGGCCCATACTaGCAGGCCAGGTCAAACTGCCTCAGCAGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: RCSLVIPVQGPY*QARSNCLSSSS Trigger: GCTGGAGCTGCTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAGGTATCACAAGGCTGCAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025773.5 ENSMUST00000237518.2 |
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