Pregenerated sensors for POF1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034607Ensembl transcript IDs: ENSMUST00000039887.4
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAGATTTTCCCAGGCACTaGCATGTACTTAGAACTATG | + |
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Preference number: 2 (lower is better) Translates to: HNCIYGYLSEERTCLSRKDFPRH*HVLRTM Trigger: CATAGTTCTAAGTACATGTCAGTGCCTGGGAAAATC...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| 3UTR TCA 72 bp | CTCATTTCCATGATTAACAAAATTAACCTCCACCTTTaGCTTAGCTGTTTCCAAGATATGTTAGCACTGCTG | + |
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Preference number: 3 (lower is better) Translates to: LISMINKINLHL*LSCFQDMLALL Trigger: CAGCAGTGCTAACATATCTTGGAAACAGCTAAGTCAAAGGTGGAGGTTAATTTTGTTAATCATGGAAATGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| 3UTR-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATTAATTGCCTCTGTTTaGCTGAAAAACAGGACTGAA | + |
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Preference number: 3 (lower is better) Translates to: HNCIYGYLSEERTCLSRKLIASV*LKNRTE Trigger: TTCAGTCCTGTTTTTCAGCAAAACAGAGGCAATTAA...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGGGAGAGCACTTCCCGTaGGCCGAGCGGGTCCAAGGC | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIEGEHFP*AERVQG Trigger: GCCTTGGACCCGCTCGGCTCACGGGAAGTGCTCTCC...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGGCTGGGTCCCGCAGCTaGTGCTGCTGGTCTCACTCC | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIEAGSRS*CCWSHS Trigger: GGAGTGAGACCAGCAGCAGCAGCTGCGGGACCCAGC...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGAGGACCTCTGTGGGCTaGTGGGTCCCGCAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIERTSVG*WVPQLL Trigger: CAGCAGCTGCGGGACCCAGCAGCCCACAGAGGTCCT...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAGGGTCCCGCAGCTGCTaGTGCTGGTCTCACTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKGSRSC*CWSHSN Trigger: ATTGGAGTGAGACCAGCAGCAGCAGCTGCGGGACCC...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGAGCGGGTCCAAGGCCTaGACCACCTTGTTCATTGGC | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIESGSKA*TTLFIG Trigger: GCCAATGAACAAGGTGGTGCAGGCCTTGGACCCGCT...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATTCCCGCAGCTGCTGCTaGTGGTCTCACTCCAATAGC | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINSRSCC*WSHSNS Trigger: GCTATTGGAGTGAGACCAGCAGCAGCAGCTGCGGGA...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGCACCACCTTGTTCATTaGCCCACTGTAGGTCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIEHHLVH*PTVGPH Trigger: GTGAGGACCTACAGTGGGCCAATGAACAAGGTGGTG...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTCTGGGGTTGCTGGATaGCATGATGATGGCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIESGVAG*HDDGTE Trigger: TTCAGTGCCATCATCATGTCATCCAGCAACCCCAGA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATCGCAGCTGCTGCTGCTaGTCTCACTCCAATAGCTTG | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINRSCCC*SHSNSL Trigger: CAAGCTATTGGAGTGAGACCAGCAGCAGCAGCTGCG...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTTTGCGCTTGAGTCTTaGAGTCCTTGTTGCTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIEFALES*SPCCCW Trigger: CCAACAGCAACAAGGACTTCAAGACTCAAGCGCAAA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATCAGGGCCATCATCCTaGATTATCACCTGTTCGTGT | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKSGPSS*IITCSC Trigger: ACACGAACAGGTGATAATTCAGGATGATGGCCCTGA...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATCTGCTGGGCTTGACTTaGCTGATGGTAATAGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINLLGLT*LMVIVV Trigger: TACCACTATTACCATCAGCCAAGTCAAGCCCAGCAG...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGAGTCCTTGTTGCTGTTaGCGATTATTTGCTCTCACT | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIESPCCC*RLFALT Trigger: AGTGAGAGCAAATAATCGCCAACAGCAACAAGGACT...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATCTGACATTTTGCGCTTaGGTCTTGAAGTCCTTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINLTFCA*VLKSLL Trigger: CAACAAGGACTTCAAGACTCAAGCGCAAAATGTCAG...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGAGTAACTTTCACTGTTaGAGAATGGAGTTCCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIESNFHC*RMEFLF Trigger: GAACAGGAACTCCATTCTCCAACAGTGAAAGTTACT...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAACTGTTTTGTAAACTCTaGCAGTCCTTTGGGAATCAA | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKLFCKL*QSFGNQ Trigger: TTGATTCCCAAAGGACTGTCAGAGTTTACAAAACAG...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATTTTCTTCCAATGACTaGCATTTTGCGCTTGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKFSSND*HFALES Trigger: AGACTCAAGCGCAAAATGTCAGTCATTGGAAGAAAA...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATTCTGTATTCCAAGTCTaGCAGTGTATGTCGAAGAGA | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINSVFQV*QCMSKR Trigger: TCTCTTCGACATACACTGTCAGACTTGGAATACAGA...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAGGGACCTTAGCTTGCTaGTTTCTCTATCTTTATCAA | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKGTLAC*FLYLYQ Trigger: TTGATAAAGATAGAGAAATCAGCAAGCTAAGGTCCC...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGGGGTTGGTTATGGGATaGATATATTTCTTGTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIEGLVMG*IYFLSQ Trigger: TTGAGACAAGAAATATATTCATCCCATAACCAACCC...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATGTGGAGAGTGCTTGGTaGACAAGTAGATATTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINVESAW*TSRYFQ Trigger: CTGAAAATATCTACTTGTGCACCAAGCACTCTCCAC...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTGTGTCACTACCTGGTaGTATATATTCATAGTCATC | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIECVTTW*YIFIVI Trigger: GATGACTATGAATATATACCACCAGGTAGTGACACA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTTGTGTGTCACTACCTaGTGGTATATATTCATAGTC | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIELCVTT*WYIFIV Trigger: GACTATGAATATATACCACCAGGTAGTGACACACAA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| 3UTR CAA 72 bp | AATGGACATCTTCACCTGATGACACTAGAGTTTTCATaGAGTAACTACACAGAATTGATGAACATAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: NGHLHLMTLEFS*SNYTELMNIGS Trigger: GCTTCCTATGTTCATCAATTCTGTGTAGTTACTCAATGAAAACTCTAGTGTCATCAGGTGAAGATGTCCATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR TCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAATTATTTGCTCTCACTaGTGCCAAGAGTTCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKIICSH*CQEFFI Trigger: TATGAAGAACTCTTGGCATCAGTGAGAGCAAATAAT...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATATAGGTCTGTATTCTTaGGACTTAGATCAGCAAGCA | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINIGLYS*DLDQQA Trigger: TGCTTGCTGATCTAAGTCGCAAGAATACAGACCTAT...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR GCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATACTCAAAATCTTGTTTaGTTCCTCCAATTCGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINTQNLV*FLQFAP Trigger: TGGAGCGAATTGGAGGAAGCAAACAAGATTTTGAGT...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGAATTACATTGTTTCCTaGGAAGAATTGACTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LHIWVSIRGENLSVQKIENYIVS*EELTSS Trigger: AGAGGAAGTCAATTCTTCCCAGGAAACAATGTAATT...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATACTCTGACAGTCCTTTaGGAATCAATGACTCAATGT | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINTLTVL*ESMTQC Trigger: ACATTGAGTCATTGATTCCCAAAGGACTGTCAGAGT...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAACATCTTTTTGGTACTaGTTTAATTGGGACCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: HNCIYGYLSEERTCLSRKTSFWY*FNWDLS Trigger: GCTAAGGTCCCAATTAAACCAGTACCAAAAAGATGT...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATCCACCACAAGAGGGTTaGTTATGGGATGAATATATT | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINPPQEG*LWDEYI Trigger: AATATATTCATCCCATAACCAACCCTCTTGTGGTGG...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATCTTCTGATGTATCTGTaGACTCAAAATCTTGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINLLMYL*TQNLVC Trigger: GCAAACAAGATTTTGAGTCCACAGATACATCAGAAG...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CCA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATCAAGAGGGTTGGTTATaGGATGAATATATTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: TQRFFPLSFACCYIKYINQEGWL*DEYISC Trigger: ACAAGAAATATATTCATCCCATAACCAACCCTCTTG...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 34% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS TCA 90 bp | ACTTTGGTAGGAGGAGGCAGGTTTGAGAGGGGAGAGCACTTCCCGTaGGCCGAGCGGGTCCAAGGCCTGCACCACCTTGTTCATTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: TLVGGGRFERGEHFP*AERVQGLHHLVHWP Trigger: GGGCCAATGAACAAGGTGGTGCAGGCCTTGGACCCGCTCGGCTCACGGGAAGTGCTCTCCCCTCTCAAACCTGCCTCCTCCTACCAAAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATGCACCACCTTGTTCATaGGCCCACTGTAGGTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: TQRFFPLSFACCYIKYINAPPCS*AHCRSS Trigger: TGAGGACCTACAGTGGGCCAATGAACAAGGTGGTGC...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGCTCGATCACAATCGTTaGTGTGTCACTACCTGGTGG | + |
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Preference number: 5 (lower is better) Translates to: LHIWVSIRGENLSVQKIELDHNR*CVTTWW Trigger: CCACCAGGTAGTGACACACAAACGATTGTGATCGAG...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATGCTGCTGGGCTTGACTaGGCTGATGGTAATAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: TQRFFPLSFACCYIKYINAAGLD*ADGNSG Trigger: ACCACTATTACCATCAGCCAAGTCAAGCCCAGCAGC...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAAGTTCCTCCCGTATGTaGCTAAACGTGGACAGCACT | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKSSSRM*LNVDST Trigger: AGTGCTGTCCACGTTTAGCAACATACGGGAGGAACT...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGCCAATGACTGACATTTaGCGCTTGAGTCTTGAAGTC | + |
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Preference number: 5 (lower is better) Translates to: LHIWVSIRGENLSVQKIEPMTDI*RLSLEV Trigger: GACTTCAAGACTCAAGCGCAAAATGTCAGTCATTGG...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS TCA 90 bp | TCTTGTTTGCTTCCTCCAATTCGCTCCAAATGTTCTAATAAGCAGTaGTATAGGTCTGTATTCTTGCGACTTAGATCAGCAAGCAACTCT | + |
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Preference number: 5 (lower is better) Translates to: SCLLPPIRSKCSNKQ*YRSVFLRLRSASNS Trigger: AGAGTTGCTTGCTGATCTAAGTCGCAAGAATACAGACCTATATCACTGCTTATTAGAACATTTGGAGCGAATTGGAGGAAGCAAACAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTTCCTGTTCAGCATTTaGTGTTATGTGGAGAGTGCT | + |
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Preference number: 5 (lower is better) Translates to: LHIWVSIRGENLSVQKIEFLFSI*CYVESA Trigger: AGCACTCTCCACATAACACAAAATGCTGAACAGGAA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTATAGGTCTGTATTCTaGCGACTTAGATCAGCAAGC | + |
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Preference number: 5 (lower is better) Translates to: LHIWVSIRGENLSVQKIEYRSVF*RLRSAS Trigger: GCTTGCTGATCTAAGTCGCAAGAATACAGACCTATA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAGACTCAAAATCTTGTTaGCTTCCTCCAATTCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKDSKSC*LPPIRS Trigger: GGAGCGAATTGGAGGAAGCAAACAAGATTTTGAGTC...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGAACTCTGACAGTCCTTaGGGAATCAATGACTCAATG | + |
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Preference number: 5 (lower is better) Translates to: LHIWVSIRGENLSVQKIENSDSP*GINDSM Trigger: CATTGAGTCATTGATTCCCAAAGGACTGTCAGAGTT...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATGCTGTTGGCGATTATTaGCTCTCACTGATGCCAAGA | + |
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Preference number: 5 (lower is better) Translates to: TQRFFPLSFACCYIKYINAVGDY*LSLMPR Trigger: TCTTGGCATCAGTGAGAGCAAATAATCGCCAACAGC...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATTGAGGACAACATTCTaGATCTGTGTTGAGCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKLRTTF*ICVELL Trigger: GAGAAGCTCAACACAGATCAAGAATGTTGTCCTCAA...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATGTGGACTCAAAATCTaGTTTGCTTCCTCCAATTCG | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKCGLKI*FASSNS Trigger: CGAATTGGAGGAAGCAAACAAGATTTTGAGTCCACA...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAACATGGACAAGTCCATTaGTCTTCAGTTTTCTCGATC | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKHGQVH*SSVFSI Trigger: GATCGAGAAAACTGAAGACAAATGGACTTGTCCATG...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | TTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAATAGAGTCTCCTAATGGTGGTTaGTGGATATGTAGTAACTTT | + |
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Preference number: 5 (lower is better) Translates to: LHIWVSIRGENLSVQKIESPNGG*WICSNF Trigger: AAAGTTACTACATATCCACAAACCACCATTAGGAGA...CTCTATTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAATGATGGCACTGAATTaGAGGACAACATTCTTGATC | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKMMALN*RTTFLI Trigger: GATCAAGAATGTTGTCCTCAAATTCAGTGCCATCAT...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATTGTTATACACTGGATTaGATGGCTAGAATGGGACTG | + |
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Preference number: 5 (lower is better) Translates to: TQRFFPLSFACCYIKYINCYTLD*MARMGL Trigger: CAGTCCCATTCTAGCCATCAAATCCAGTGTATAACA...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATACTGACATTTTGCGCTaGAGTCTTGAAGTCCTTGTT | + |
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Preference number: 5 (lower is better) Translates to: TQRFFPLSFACCYIKYINTDILR*SLEVLV Trigger: AACAAGGACTTCAAGACTCAAGCGCAAAATGTCAGT...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS GCA 90 bp | ATGACTCAATGTCTTCTGATGTATCTGTGGACTCAAAATCTTGTTTaGTTCCTCCAATTCGCTCCAAATGTTCTAATAAGCAGTGATATA | + |
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Preference number: 5 (lower is better) Translates to: MTQCLLMYLWTQNLV*FLQFAPNVLISSDI Trigger: TATATCACTGCTTATTAGAACATTTGGAGCGAATTGGAGGAAGCAAACAAGATTTTGAGTCCACAGATACATCAGAAGACATTGAGTCAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | CATAATTGCATATATGGGTATCTATCAGAGGAGAGAACTTGTCTGTCCAGAAAAAATTGGGACCTTAGCTaGCTGATTTCTCTATCTTTA | + |
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Preference number: 5 (lower is better) Translates to: HNCIYGYLSEERTCLSRKNWDLS*LISLSL Trigger: TAAAGATAGAGAAATCAGCAAGCTAAGGTCCCAATT...TTTTCTGGACAGACAAGTTCTCTCCTCTGATAGATACCCATATATGCAATTATG 37% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CCA 90 bp | CAACTTCCTTCTCTTTTTGAAACATCTTTTTGGTACTGGTTTAATTaGGACCTTAGCTTGCTGATTTCTCTATCTTTATCAAGTCTCAAG | + |
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Preference number: 5 (lower is better) Translates to: QLPSLFETSFWYWFN*DLSLLISLSLSSLK Trigger: CTTGAGACTTGATAAAGATAGAGAAATCAGCAAGCTAAGGTCCCAATTAAACCAGTACCAAAAAGATGTTTCAAAAAGAGAAGGAAGTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS-3UTR CAA 90 bp | ACACAAAGGTTTTTCCCCCTCTCATTTGCGTGTTGCTATATCAAATATATCAATAACTCTCCAAAATATTaGGGATCCAATTTTTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: TQRFFPLSFACCYIKYINNSPKY*GSNFSG Trigger: CCCTGAAAAATTGGATCCCAAATATTTTGGAGAGTT...ATTGATATATTTGATATAGCAACACGCAAATGAGAGGGGGAAAAACCTTTGTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS TCA 72 bp | GGAGGAGGCAGGTTTGAGAGGGGAGAGCACTTCCCGTaGGCCGAGCGGGTCCAAGGCCTGCACCACCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: GGGRFERGEHFP*AERVQGLHHLV Trigger: AACAAGGTGGTGCAGGCCTTGGACCCGCTCGGCTCACGGGAAGTGCTCTCCCCTCTCAAACCTGCCTCCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CCA 72 bp | GCCGAGCGGGTCCAAGGCCTGCACCACCTTGTTCATTaGCCCACTGTAGGTCCTCACTCGTTCATACACTAC | + |
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Preference number: 6 (lower is better) Translates to: AERVQGLHHLVH*PTVGPHSFIHY Trigger: GTAGTGTATGAACGAGTGAGGACCTACAGTGGGCCAATGAACAAGGTGGTGCAGGCCTTGGACCCGCTCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CCA 72 bp | CTGGATTTGATGGCTAGAATGGGACTGTTGACAATGTaGCGAGTGGATGATCTGGGGTTGCTGGATGACATG | + |
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Preference number: 6 (lower is better) Translates to: LDLMARMGLLTM*RVDDLGLLDDM Trigger: CATGTCATCCAGCAACCCCAGATCATCCACTCGCCACATTGTCAACAGTCCCATTCTAGCCATCAAATCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | GGACTGTTGACAATGTGGCGAGTGGATGATCTGGGGTaGCTGGATGACATGATGATGGCACTGAATTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: GLLTMWRVDDLG*LDDMMMALNLR Trigger: CCTCAAATTCAGTGCCATCATCATGTCATCCAGCAACCCCAGATCATCCACTCGCCACATTGTCAACAGTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | AGGGCCATCATCCTGAATTATCACCTGTTCGTGTATTaGGCTTGGCCCGCCATGACAGAGTTCATGCCCAAT | + |
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Preference number: 6 (lower is better) Translates to: RAIILNYHLFVY*AWPAMTEFMPN Trigger: ATTGGGCATGAACTCTGTCATGGCGGGCCAAGCCAAATACACGAACAGGTGATAATTCAGGATGATGGCCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 90 bp | GCTAGAATGGGACTGTTGACAATGTGGCGAGTGGATGATCTGGGGTaGCTGGATGACATGATGATGGCACTGAATTTGAGGACAACATTC | + |
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Preference number: 6 (lower is better) Translates to: ARMGLLTMWRVDDLG*LDDMMMALNLRTTF Trigger: GAATGTTGTCCTCAAATTCAGTGCCATCATCATGTCATCCAGCAACCCCAGATCATCCACTCGCCACATTGTCAACAGTCCCATTCTAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | TGTTATACACTGGATTTGATGGCTAGAATGGGACTGTaGACAATGTGGCGAGTGGATGATCTGGGGTTGCTG | + |
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Preference number: 6 (lower is better) Translates to: CYTLDLMARMGL*TMWRVDDLGLL Trigger: CAGCAACCCCAGATCATCCACTCGCCACATTGTCAACAGTCCCATTCTAGCCATCAAATCCAGTGTATAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | CTGGGGTTGCTGGATGACATGATGATGGCACTGAATTaGAGGACAACATTCTTGATCTGTGTTGAGCTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LGLLDDMMMALN*RTTFLICVELL Trigger: GAGAAGCTCAACACAGATCAAGAATGTTGTCCTCAAATTCAGTGCCATCATCATGTCATCCAGCAACCCCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | CATCATCCTGAATTATCACCTGTTCGTGTATTTGGCTaGGCCCGCCATGACAGAGTTCATGCCCAATATTTG | + |
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Preference number: 6 (lower is better) Translates to: HHPELSPVRVFG*ARHDRVHAQYL Trigger: CAAATATTGGGCATGAACTCTGTCATGGCGGGCCAAGCCAAATACACGAACAGGTGATAATTCAGGATGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 90 bp | TTTCAGGGCCATCATCCTGAATTATCACCTGTTCGTGTATTTGGCTaGGCCCGCCATGACAGAGTTCATGCCCAATATTTGAATCATTTT | + |
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Preference number: 6 (lower is better) Translates to: FQGHHPELSPVRVFG*ARHDRVHAQYLNHF Trigger: AAAATGATTCAAATATTGGGCATGAACTCTGTCATGGCGGGCCAAGCCAAATACACGAACAGGTGATAATTCAGGATGATGGCCCTGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS TCA 72 bp | AAATATTTGGGATCCAATTTTTCAGGGCCATCATCCTaGATTATCACCTGTTCGTGTATTTGGCTTGGCCCG | + |
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Preference number: 6 (lower is better) Translates to: KYLGSNFSGPSS*IITCSCIWLGP Trigger: CGGGCCAAGCCAAATACACGAACAGGTGATAATTCAGGATGATGGCCCTGAAAAATTGGATCCCAAATATTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | TTTCACTGTTGGAGAATGGAGTTCCTGTTCAGCATTTaGTGTTATGTGGAGAGTGCTTGGTGCACAAGTAGA | + |
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Preference number: 6 (lower is better) Translates to: FHCWRMEFLFSI*CYVESAWCTSR Trigger: TCTACTTGTGCACCAAGCACTCTCCACATAACACAAAATGCTGAACAGGAACTCCATTCTCCAACAGTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | TTGAGTCTTGAAGTCCTTGTTGCTGTTGGCGATTATTaGCTCTCACTGATGCCAAGAGTTCTTCATACTCTT | + |
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Preference number: 6 (lower is better) Translates to: LSLEVLVAVGDY*LSLMPRVLHTL Trigger: AAGAGTATGAAGAACTCTTGGCATCAGTGAGAGCAAATAATCGCCAACAGCAACAAGGACTTCAAGACTCAA 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 90 bp | GTCGAAGAGAAAGGTTATTTTCTTCCAATGACTGACATTTTGCGCTaGAGTCTTGAAGTCCTTGTTGCTGTTGGCGATTATTTGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: VEEKGYFLPMTDILR*SLEVLVAVGDYLLS Trigger: TGAGAGCAAATAATCGCCAACAGCAACAAGGACTTCAAGACTCAAGCGCAAAATGTCAGTCATTGGAAGAAAATAACCTTTCTCTTCGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 90 bp | GTGTATGTCGAAGAGAAAGGTTATTTTCTTCCAATGACTGACATTTaGCGCTTGAGTCTTGAAGTCCTTGTTGCTGTTGGCGATTATTTG | + |
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Preference number: 6 (lower is better) Translates to: VYVEEKGYFLPMTDI*RLSLEVLVAVGDYL Trigger: CAAATAATCGCCAACAGCAACAAGGACTTCAAGACTCAAGCGCAAAATGTCAGTCATTGGAAGAAAATAACCTTTCTCTTCGACATACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 90 bp | TCATGGACAAGTCCATTTGTCTTCAGTTTTCTCGATCACAATCGTTaGTGTGTCACTACCTGGTGGTATATATTCATAGTCATCGTACAG | + |
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Preference number: 6 (lower is better) Translates to: SWTSPFVFSFLDHNR*CVTTWWYIFIVIVQ Trigger: CTGTACGATGACTATGAATATATACCACCAGGTAGTGACACACAAACGATTGTGATCGAGAAAACTGAAGACAAATGGACTTGTCCATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS TCA 72 bp | CTTCCTCCAATTCGCTCCAAATGTTCTAATAAGCAGTaGTATAGGTCTGTATTCTTGCGACTTAGATCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LPPIRSKCSNKQ*YRSVFLRLRSA Trigger: TGCTGATCTAAGTCGCAAGAATACAGACCTATATCACTGCTTATTAGAACATTTGGAGCGAATTGGAGGAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS GCA 72 bp | TGTCTTCTGATGTATCTGTGGACTCAAAATCTTGTTTaGTTCCTCCAATTCGCTCCAAATGTTCTAATAAGC | + |
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Preference number: 6 (lower is better) Translates to: CLLMYLWTQNLV*FLQFAPNVLIS Trigger: GCTTATTAGAACATTTGGAGCGAATTGGAGGAAGCAAACAAGATTTTGAGTCCACAGATACATCAGAAGACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CCA 72 bp | AGGGTTTTGTACTATGTATCTCCTAATGGTGGTTTGTaGATATGTAGTAACTTTCACTGTTGGAGAATGGAG | + |
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Preference number: 6 (lower is better) Translates to: RVLYYVSPNGGL*ICSNFHCWRME Trigger: CTCCATTCTCCAACAGTGAAAGTTACTACATATCCACAAACCACCATTAGGAGATACATAGTACAAAACCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CCA 72 bp | TTTGTGGTGATTGTAGTCCTTCCACCACAAGAGGGTTaGTTATGGGATGAATATATTTCTTGTCTCAACTTT | + |
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Preference number: 6 (lower is better) Translates to: FVVIVVLPPQEG*LWDEYISCLNF Trigger: AAAGTTGAGACAAGAAATATATTCATCCCATAACCAACCCTCTTGTGGTGGAAGGACTACAATCACCACAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | AAAGGTTATTTTCTTCCAATGACTGACATTTTGCGCTaGAGTCTTGAAGTCCTTGTTGCTGTTGGCGATTAT | + |
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Preference number: 6 (lower is better) Translates to: KGYFLPMTDILR*SLEVLVAVGDY Trigger: ATAATCGCCAACAGCAACAAGGACTTCAAGACTCAAGCGCAAAATGTCAGTCATTGGAAGAAAATAACCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | AGTCCATTTGTCTTCAGTTTTCTCGATCACAATCGTTaGTGTGTCACTACCTGGTGGTATATATTCATAGTC | + |
|
Preference number: 6 (lower is better) Translates to: SPFVFSFLDHNR*CVTTWWYIFIV Trigger: GACTATGAATATATACCACCAGGTAGTGACACACAAACGATTGTGATCGAGAAAACTGAAGACAAATGGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | ATGTCTTCTGATGTATCTGTGGACTCAAAATCTTGTTaGCTTCCTCCAATTCGCTCCAAATGTTCTAATAAG | + |
|
Preference number: 6 (lower is better) Translates to: MSSDVSVDSKSC*LPPIRSKCSNK Trigger: CTTATTAGAACATTTGGAGCGAATTGGAGGAAGCAAACAAGATTTTGAGTCCACAGATACATCAGAAGACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 90 bp | GTCTCAGACACCTGTATTCTAAGGTTTTTATTCTCTTGCTCTAAATaGCGTTTACAATACTCAAGTTCTTTCAGTCTGTATTCCAAGTCT | + |
|
Preference number: 6 (lower is better) Translates to: VSDTCILRFLFSCSK*RLQYSSSFSLYSKS Trigger: AGACTTGGAATACAGACTGAAAGAACTTGAGTATTGTAAACGCAATTTAGAGCAAGAGAATAAAAACCTTAGAATACAGGTGTCTGAGAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS TCA 72 bp | CCTTCTCTTCCAGCAAACTTGTCAATTCATGAAGTTTaGATTGGAAATCACTACAACTTCCTTCTCTTTTTG | + |
|
Preference number: 6 (lower is better) Translates to: PSLPANLSIHEV*IGNHYNFLLFL Trigger: CAAAAAGAGAAGGAAGTTGTAGTGATTTCCAATTCAAACTTCATGAATTGACAAGTTTGCTGGAAGAGAAGG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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| CDS CAA 72 bp | GTTGGTTATGGGATGAATATATTTCTTGTCTCAACTTaGAGAGTTCCTCTGATTGACGCTTTATTAGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: VGYGMNIFLVST*RVPLIDALLEN Trigger: ATTCTCTAATAAAGCGTCAATCAGAGGAACTCTCAAAGTTGAGACAAGAAATATATTCATCCCATAACCAAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039887.4 |
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