RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PODN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028600

Ensembl transcript IDs: ENSMUST00000044248.14, ENSMUST00000106708.8, ENSMUST00000106709.9, ENSMUST00000130026.2, ENSMUST00000146851.8

Found 377 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATaGGGCACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCG +
Preference number: 1 (lower is better)
Translates to: VPLGLSVGCVRRGRS*GTGLGCRKESGSPS
Trigger: CGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR GCA 90 bp GTTGGGTGTGTCAGAAGGGGGCGCTCATGGGGCACAGGCCTGGGCTaGAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATG +
Preference number: 1 (lower is better)
Translates to: VGCVRRGRSWGTGLG*RKESGSPSSWVSSM
Trigger: CATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATGAGCGCCCCCTTCTGACACACCCAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 90 bp TCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGGGGCACAGGCCTaGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCAT +
Preference number: 1 (lower is better)
Translates to: SALGVSEGGAHGAQA*AAERSPVVHRPGFH
Trigger: ATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATGAGCGCCCCCTTCTGACACACCCAACGCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 90 bp GGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGCCCAGCACCTaGGGGGAGGAGGTGAGGCTGTGGTCGAAGGCAGAAGGTTCAAGT +
Preference number: 1 (lower is better)
Translates to: GHNKKGLPAVGVPST*GEEVRLWSKAEGSS
Trigger: ACTTGAACCTTCTGCCTTCGACCACAGCCTCACCTCCTCCCCCCAGGTGCTGGGCACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR TCA 90 bp CCACCCCCACCACGCACTGCTGCCTCTTTCTCTTCCAAGCCTTCTTaGGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACA +
Preference number: 1 (lower is better)
Translates to: PPPPRTAASFSSKPS*GCSLKVPVTCQGTT
Trigger: TGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCTCAAGAAGGCTTGGAAGAGAAAGAGGCAGCAGTGCGTGGTGGGGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR GCA 90 bp GTGGTGGTGAAGTGGTATCTGCACGTGTCTGACTGTGTGACACATTaGTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACT +
Preference number: 1 (lower is better)
Translates to: VVVKWYLHVSDCVTH*WKGWDTRLCSARVT
Trigger: AGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTCACACAGTCAGACACGTGCAGATACCACTTCACCACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 90 bp TGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCTGGCTATCTACGTaGCCAAACTGGGGGCGTGGTGGTGAAGTGGTATCTGCACGTGTC +
Preference number: 1 (lower is better)
Translates to: CREPVWKVICSWLST*PNWGRGGEVVSARV
Trigger: GACACGTGCAGATACCACTTCACCACCACGCCCCCAGTTTGGCCACGTAGATAGCCAGCTGCATATGACCTTCCAAACTGGCTCTCTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGTGTaGGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCTGGC +
Preference number: 1 (lower is better)
Translates to: VCVCVCVCVCVCVSV*DCAESQFGRSYAAG
Trigger: GCCAGCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACACACACACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCCGTGTGACTTTCGGGTaGCTCTTGGGCTCAGCGTTG +
Preference number: 2 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGRVTFG*LLGSAL
Trigger: CAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACG...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTCATGGGGCACAGGCCTaGGCTGCAGAAAGGAGTCCG +
Preference number: 2 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGHGAQA*AAERSP
Trigger: CGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATG...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CAA 90 bp CCCACCCCCACCACGCACTGCTGCCTCTTTCTCTTCCAAGCCTTCTaGAGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAAC +
Preference number: 2 (lower is better)
Translates to: PTPTTHCCLFLFQAF*RLFSESACDLPGHN
Trigger: GTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCTCAAGAAGGCTTGGAAGAGAAAGAGGCAGCAGTGCGTGGTGGGGGTGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR TCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGGTGTGGACTCAGAGGTaGGGGTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRVWTQR*GCVCVC
Trigger: ACACACACACACACACCCTCACCTCTGAGTCCACAC...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTGGCACAGGCCTGGGCTaGAGAAAGGAGTCCGGTAGT +
Preference number: 2 (lower is better)
Translates to: NPASPREGPEDKAHGQLFGTGLG*RKESGS
Trigger: ACTACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCC...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAAGCTGGCTATCTACGTaGCCAAACTGGGGGCGTGGT +
Preference number: 2 (lower is better)
Translates to: PASPREGPEDKAHGQLFPSWLST*PNWGRG
Trigger: ACCACGCCCCCAGTTTGGCCACGTAGATAGCCAGCT...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR TCA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACGTGTCTGACTGTGTaGCACATTGCTGGAAGGGGT +
Preference number: 2 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGTCLTV*HIAGRG
Trigger: ACCCCTTCCAGCAATGTGTCACACAGTCAGACACGT...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR TCA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGACGTGTCTGACTGTGTaGCACATTGCTGGAAGGGGT +
Preference number: 2 (lower is better)
Translates to: DNPASPREGPEDKAHGQLTCLTV*HIAGRG
Trigger: ACCCCTTCCAGCAATGTGTCACACAGTCAGACACGT...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGCGTGTGACTTTCGGGTaGCTCTTGGGCTCAGCGTTG +
Preference number: 2 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVRVTFG*LLGSAL
Trigger: CAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACG...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR TCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAACGTGTCTGACTGTGTaGCACATTGCTGGAAGGGGT +
Preference number: 2 (lower is better)
Translates to: PASPREGPEDKAHGQLFPTCLTV*HIAGRG
Trigger: ACCCCTTCCAGCAATGTGTCACACAGTCAGACACGT...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCGGCACAGGCCTGGGCTaGAGAAAGGAGTCCGGTAGT +
Preference number: 2 (lower is better)
Translates to: RLFSESACDLPGHNKKGLGTGLG*RKESGS
Trigger: ACTACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCC...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTCAGTGTGAGATTGTaGAGAGAGCCAGTTTGGAAG +
Preference number: 2 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGVSVRL*REPVWK
Trigger: CTTCCAAACTGGCTCTCTGCACAATCTCACACTGAC...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACCCCACCACGCACTGCTaGCTCTTTCTCTTCCAAGCC +
Preference number: 2 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHPTTHC*LFLFQA
Trigger: GGCTTGGAAGAGAAAGAGGCAGCAGTGCGTGGTGGG...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACGACTGTGTGACACATTaGTGGAAGGGGTGGGACACG +
Preference number: 2 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHDCVTH*WKGWDT
Trigger: CGTGTCCCACCCCTTCCAGCAATGTGTCACACAGTC...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCATGGGGCACAGGCCTaGGCTGCAGAAAGGAGTCCG +
Preference number: 2 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAHGAQA*AAERSP
Trigger: CGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACGGCGTGGTGGTGAAGTaGTATCTGCACGTGTCTGAC +
Preference number: 2 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHGVVVK*YLHVSD
Trigger: GTCAGACACGTGCAGATACCACTTCACCACCACGCC...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR TCA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACTTGCGTCTCAAAGAGTaGAAAGCACCCGGCCACAGA +
Preference number: 2 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHLRLKE*KAPGHR
Trigger: TCTGTGGCCGGGTGCTTTTCACTCTTTGAGACGCAA...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCGTGTGACTTTCGGGTaGCTCTTGGGCTCAGCGTTG +
Preference number: 2 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGRVTFG*LLGSAL
Trigger: CAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACG...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTaGGAAGGTCATATGCAGCTGGCTATCTACGTGGCCAAACTGGGG +
Preference number: 2 (lower is better)
Translates to: VCVCVCQCEIVQRAS*EGHMQLAIYVAKLG
Trigger: CCCCAGTTTGGCCACGTAGATAGCCAGCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCGACTGTGTGACACATTaGTGGAAGGGGTGGGACACG +
Preference number: 2 (lower is better)
Translates to: VCVSVRLCREPVWKVICSDCVTH*WKGWDT
Trigger: CGTGTCCCACCCCTTCCAGCAATGTGTCACACAGTC...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR GCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCCCACCACGCACTGCTaGCTCTTTCTCTTCCAAGCC +
Preference number: 2 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAPTTHC*LFLFQA
Trigger: GGCTTGGAAGAGAAAGAGGCAGCAGTGCGTGGTGGG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp TCCTTAAACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACCATGGGGCACAGGCCTaGGCTGCAGAAAGGAGTCCG +
Preference number: 2 (lower is better)
Translates to: SLNKTKGTQNFPAELKTNHGAQA*AAERSP
Trigger: CGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATG...GTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTTTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCTGCAGAGAGCCAGTTTaGAAGGTCATATGCAGCTGG +
Preference number: 2 (lower is better)
Translates to: RLFSESACDLPGHNKKGLCREPV*KVICSW
Trigger: CCAGCTGCATATGACCTTCCAAACTGGCTCTCTGCA...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR TCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGTGTGGACTCAGAGGTaGGGGTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAVWTQR*GCVCVC
Trigger: ACACACACACACACACCCTCACCTCTGAGTCCACAC...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CCA 90 bp TCCTTAAACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACTGCAGAGAGCCAGTTTaGAAGGTCATATGCAGCTGG +
Preference number: 2 (lower is better)
Translates to: SLNKTKGTQNFPAELKTNCREPV*KVICSW
Trigger: CCAGCTGCATATGACCTTCCAAACTGGCTCTCTGCA...GTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTTTAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 72 bp GGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATaGGGCACAGGCCTGGGCTGCAGAAAGGAGTCCGGT +
Preference number: 3 (lower is better)
Translates to: GLSVGCVRRGRS*GTGLGCRKESG
Trigger: ACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 72 bp GGTGTGTCAGAAGGGGGCGCTCATGGGGCACAGGCCTaGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCT +
Preference number: 3 (lower is better)
Translates to: GVSEGGAHGAQA*AAERSPVVHRP
Trigger: AGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGTGCCCCATGAGCGCCCCCTTCTGACACACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 72 bp AAAAAGGGACTCCCAGCAGTAGGAGTGCCCAGCACCTaGGGGGAGGAGGTGAGGCTGTGGTCGAAGGCAGAA +
Preference number: 3 (lower is better)
Translates to: KKGLPAVGVPST*GEEVRLWSKAE
Trigger: TTCTGCCTTCGACCACAGCCTCACCTCCTCCCCCCAGGTGCTGGGCACTCCTACTGCTGGGAGTCCCTTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR GCA 72 bp GACACGAGACTGTGTTCAGCCCGTGTGACTTTCGGGTaGCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGG +
Preference number: 3 (lower is better)
Translates to: DTRLCSARVTFG*LLGSALGVSEG
Trigger: CCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGTCTCGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 72 bp TGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATaGCCAACTGTTTCCAACCAGAGCTGTCTGGAAGCA +
Preference number: 3 (lower is better)
Translates to: CVSKGGTRGQGT*PTVSNQSCLEA
Trigger: TGCTTCCAGACAGCTCTGGTTGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CAA 90 bp CTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAAGTGCAGAGAGCCAGTTaGGAAGGTCATATGCAGCTG +
Preference number: 3 (lower is better)
Translates to: LRLQGRDQRTRHMANCFQVQRAS*EGHMQL
Trigger: CAGCTGCATATGACCTTCCAAACTGGCTCTCTGCAC...TTGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR GCA 72 bp AAGTGGTATCTGCACGTGTCTGACTGTGTGACACATTaGTGGAAGGGGTGGGACACGAGACTGTGTTCAGCC +
Preference number: 3 (lower is better)
Translates to: KWYLHVSDCVTH*WKGWDTRLCSA
Trigger: GGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTCACACAGTCAGACACGTGCAGATACCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CCA 72 bp CCAGTTTGGAAGGTCATATGCAGCTGGCTATCTACGTaGCCAAACTGGGGGCGTGGTGGTGAAGTGGTATCT +
Preference number: 3 (lower is better)
Translates to: PVWKVICSWLST*PNWGRGGEVVS
Trigger: AGATACCACTTCACCACCACGCCCCCAGTTTGGCCACGTAGATAGCCAGCTGCATATGACCTTCCAAACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR-3UTR CAA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGTGCAGAGAGCCAGTTaGGAAGGTCATATGCAGCTG +
Preference number: 3 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAVQRAS*EGHMQL
Trigger: CAGCTGCATATGACCTTCCAAACTGGCTCTCTGCAC...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR TCA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCAGTGTaGGATTGTGCAGAGAGCCAGTTTGGAAGGTCATAT +
Preference number: 3 (lower is better)
Translates to: CVCVCVCVCVSV*DCAESQFGRSY
Trigger: ATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACACACACACACACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CAA 72 bp GCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTaGGGTGTGTCAGAAGGGGGCGCTCATGGGGCACAG +
Preference number: 4 (lower is better)
Translates to: ARVTFGCLLGSA*GVSEGGAHGAQ
Trigger: CTGTGCCCCATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGGGGACAGTCGACAGTaGCTGGGCCAGGCTCTGGCT +
Preference number: 4 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGGDSRQ*LGQALA
Trigger: AGCCAGAGCCTGGCCCAGCCACTGTCGACTGTCCCC...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCGGTTGTGCAGGATCATaGGGGTGCGCACTCGGCGGG +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSGCAGS*GCALGG
Trigger: CCCGCCGAGTGCGCACCCTCATGATCCTGCACAACC...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAGGTTGTGCAGGATCATaGGGGTGCGCACTCGGCGGG +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPGCAGS*GCALGG
Trigger: CCCGCCGAGTGCGCACCCTCATGATCCTGCACAACC...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGCCTCGGGGCTCAGGGTaGGGGTGTCACTTCGGCCAA +
Preference number: 4 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVPRGSG*GCHFGQ
Trigger: TTGGCCGAAGTGACACCCCCACCCTGAGCCCCGAGG...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGCTCGGGCAGGTCGCCTaGAAACTCACGCAGGTCAAT +
Preference number: 4 (lower is better)
Translates to: STRPQSKETTLRLQGRDQLGQVA*KLTQVN
Trigger: ATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAG...CTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGACTGATCAGGGCGTTTaGCAGGAATCGGGGTGCCAG +
Preference number: 4 (lower is better)
Translates to: STRPQSKETTLRLQGRDQTDQGV*QESGCQ
Trigger: CTGGCACCCCGATTCCTGCCAAACGCCCTGATCAGT...CTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCACGGGTGGCAGGTGCTTaGGCACGTGGCGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSRVAGA*ARGAGS
Trigger: ACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCG...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCACGGGTGGCAGGTGCTTaGGCACGTGGCGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPRVAGA*ARGAGS
Trigger: ACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCG...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGGGGCCCAGGAAGAGCTaGAGCACCAGCAGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: DNPASPREGPEDKAHGQLGPRKS*STSSRS
Trigger: ACTCCTACTGCTGGTGCTTCAGCTCTTCCTGGGCCC...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCTGTGTGGAGCTTCTTaGGGCCCTGGAAGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRLCGAS*GPGRPV
Trigger: CACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAG...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCGGGACCTCTGTGAGCTaGTTCCCAGCGATGTCCAGC +
Preference number: 4 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGGTSVS*FPAMSS
Trigger: GCTGGACATCGCTGGGAATCAGCTCACAGAGGTCCC...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGGCATTTTTCTCCAGGTaGAGCAGGACCAGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: LSGASWAQRWVCQKGALMAFFSR*SRTRLR
Trigger: CCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGC...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCGCAGCAGGCGTAGCTTaGGGAAGGCATCTCGGTGCA +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAAAGVA*GRHLGA
Trigger: TGCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGC...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGGCAGCAGGCGTAGCTTaGGGAAGGCATCTCGGTGCA +
Preference number: 4 (lower is better)
Translates to: DNPASPREGPEDKAHGQLAAGVA*GRHLGA
Trigger: TGCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGC...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTGGCTGGGCCAGGCTCTaGCTCCTCGGAGCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: NPASPREGPEDKAHGQLFGWARL*LLGAQN
Trigger: GTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGCC...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCACAGTCGACAGTGGCTaGGCCAGGCTCTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSTVDSG*ARLWLL
Trigger: GAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGT...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTACAGTCGACAGTGGCTaGGCCAGGCTCTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVTVDSG*ARLWLL
Trigger: GAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGT...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGCTCGGGCAGGTCGCCTaGAAACTCACGCAGGTCAAT +
Preference number: 4 (lower is better)
Translates to: LSGASWAQRWVCQKGALMLGQVA*KLTQVN
Trigger: ATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAG...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCGCAAGGAGAGATGGTTaGTGTGCTCGGGCAGGTCGC +
Preference number: 4 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGARRDG*CARAGR
Trigger: GCGACCTGCCCGAGCACACCAACCATCTCTCCTTGC...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGCAAGGAGAGATGGTTaGTGTGCTCGGGCAGGTCGC +
Preference number: 4 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGARRDG*CARAGR
Trigger: GCGACCTGCCCGAGCACACCAACCATCTCTCCTTGC...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGGAGCCATTGAACATGTaGTCCGGCAGCCCGGCATCT +
Preference number: 4 (lower is better)
Translates to: LSGASWAQRWVCQKGALMEPLNM*SGSPAS
Trigger: AGATGCCGGGCTGCCGGACCACATGTTCAATGGCTC...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCTTGTACAGAGCGGGTaGCAGGTGCTTGGGCACGTG +
Preference number: 4 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRLVQSG*QVLGHV
Trigger: CACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAG...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAGCCCTGGAAGGCCAGTaGGTGGATACCCTTGGCCTG +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPALEGQ*VDTLGL
Trigger: CAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGC...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGCAGATACTCCAGAGATaGGGGGAGCCCCTCAGGGAC +
Preference number: 4 (lower is better)
Translates to: DNPASPREGPEDKAHGQLQILQR*GEPLRD
Trigger: GTCCCTGAGGGGCTCCCCCCATCTCTGGAGTATCTG...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGGGCCCAGGAAGAGCTaGAGCACCAGCAGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSGPRKS*STSSRS
Trigger: ACTCCTACTGCTGGTGCTTCAGCTCTTCCTGGGCCC...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCGGGCCCAGGAAGAGCTaGAGCACCAGCAGTAGGAGT +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSGPRKS*STSSRS
Trigger: ACTCCTACTGCTGGTGCTTCAGCTCTTCCTGGGCCC...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTGGGACCTCTGTGAGCTaGTTCCCAGCGATGTCCAGC +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVGTSVS*FPAMSS
Trigger: GCTGGACATCGCTGGGAATCAGCTCACAGAGGTCCC...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAGGGACCTCTGTGAGCTaGTTCCCAGCGATGTCCAGC +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPGTSVS*FPAMSS
Trigger: GCTGGACATCGCTGGGAATCAGCTCACAGAGGTCCC...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTCCTCAGGGACCTCTGTaGGCTGATTCCCAGCGATGT +
Preference number: 4 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGPQGPL*ADSQRC
Trigger: ACATCGCTGGGAATCAGCTCACAGAGGTCCCTGAGG...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCGTCAGGCGGTTGTTCTaGAGGTTCAGCGTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAVRRLF*RFSVSS
Trigger: GCTGGAGACGCTGAACCTGCAGAACAACCGCCTGAC...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGTGGCAGGAATCGGGGTaGCAGTGTCAGCTTGTTGTT +
Preference number: 4 (lower is better)
Translates to: STRPQSKETTLRLQGRDQWQESG*QCQLVV
Trigger: AACAACAAGCTGACACTGGCACCCCGATTCCTGCCA...CTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGCCTGTAATCTGGTTGTaGAGGATCATGAGGGTGCGC +
Preference number: 4 (lower is better)
Translates to: STRPQSKETTLRLQGRDQPVIWL*RIMRVR
Trigger: GCGCACCCTCATGATCCTGCACAACCAGATTACAGG...CTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTCGGAAGGCATCTCGGTaGATCTGTGGGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGRKASR*ICGLVM
Trigger: CATCACCAGCCCACAGATGCACCGAGATGCCTTCCG...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGGCGATGTCCAGCAGCTaGAGACCAGCAAGGTCCACC +
Preference number: 4 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVAMSSS*RPARST
Trigger: GGTGGACCTTGCTGGTCTGCAGCTGCTGGACATCGC...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGTCAATGTCCAAGACCTaGAGGTGTTTCAGCCTCCGG +
Preference number: 4 (lower is better)
Translates to: STRPQSKETTLRLQGRDQSMSKT*RCFSLR
Trigger: CCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGA...CTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTACAGTCGACAGTGGCTaGGCCAGGCTCTGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: NPASPREGPEDKAHGQLFTVDSG*ARLWLL
Trigger: GAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGT...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGCAAGGAGAGATGGTTaGTGTGCTCGGGCAGGTCGC +
Preference number: 4 (lower is better)
Translates to: SEKHPATEQGDNPASPREARRDG*CARAGR
Trigger: GCGACCTGCCCGAGCACACCAACCATCTCTCCTTGC...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGCTCAAATGCCTCCTCTaGGAGCCCTCGGGATGTCAG +
Preference number: 4 (lower is better)
Translates to: DNPASPREGPEDKAHGQLLKCLL*EPSGCQ
Trigger: CTGACATCCCGAGGGCTCCCAGAGGAGGCATTTGAG...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTAGGTGCTTGGGCACGTaGCGCAGGAAGTTGCTGGAC +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVRCLGT*RRKLLD
Trigger: GTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCT...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTAGGTGCTTGGGCACGTaGCGCAGGAAGTTGCTGGAC +
Preference number: 4 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCRCLGT*RRKLLD
Trigger: GTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCT...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCCTTGTACAGAGCGGGTaGCAGGTGCTTGGGCACGTG +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSLVQSG*QVLGHV
Trigger: CACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAG...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCCCCTTGGCCTGCAGCTaGTTGCTATGTAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAPLACS*LLCSSR
Trigger: CCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGG...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTGGAAGGCCAGTGGGTaGATACCCTTGGCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVWKASG*IPLACS
Trigger: GCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCA...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGGCCCTGGAAGGCCAGTaGGTGGATACCCTTGGCCTG +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVALEGQ*VDTLGL
Trigger: CAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGC...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGCAGATACTCCAGAGATaGGGGGAGCCCCTCAGGGAC +
Preference number: 4 (lower is better)
Translates to: SEKHPATEQGDNPASPREQILQR*GEPLRD
Trigger: GTCCCTGAGGGGCTCCCCCCATCTCTGGAGTATCTG...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGCGTTGCTGGAGCCATTaGACATGTGGTCCGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVRCWSH*TCGPAA
Trigger: GGCTGCCGGACCACATGTTCAATGGCTCCAGCAACG...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTCTGTGTGGAGCTTCTTaGGGCCCTGGAAGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGLCGAS*GPGRPV
Trigger: CACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAG...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGTCAGGCGGTTGTTCTaGAGGTTCAGCGTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSVRRLF*RFSVSS
Trigger: GCTGGAGACGCTGAACCTGCAGAACAACCGCCTGAC...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGGCGGTTGTTCTaGAGGTTCAGCGTCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCVRRLF*RFSVSS
Trigger: GCTGGAGACGCTGAACCTGCAGAACAACCGCCTGAC...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTGCATTTTTCTCCAGGTaGAGCAGGACCAGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVAFFSR*SRTRLR
Trigger: CCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGC...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGCATTTTTCTCCAGGTaGAGCAGGACCAGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: SEKHPATEQGDNPASPREAFFSR*SRTRLR
Trigger: CCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGC...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCACGGAAGGCATCTCGGTaGATCTGTGGGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSRKASR*ICGLVM
Trigger: CATCACCAGCCCACAGATGCACCGAGATGCCTTCCG...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGGCGATGTCCAGCAGCTaGAGACCAGCAAGGTCCACC +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVAMSSS*RPARST
Trigger: GGTGGACCTTGCTGGTCTGCAGCTGCTGGACATCGC...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCTTCTGCAAGGAGAGATaGTTGGTGTGCTCGGGCAGG +
Preference number: 4 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGFCKER*LVCSGR
Trigger: CCTGCCCGAGCACACCAACCATCTCTCCTTGCAGAA...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGTTCTGCAAGGAGAGATaGTTGGTGTGCTCGGGCAGG +
Preference number: 4 (lower is better)
Translates to: ATEQGDNPASPREGPEDKFCKER*LVCSGR
Trigger: CCTGCCCGAGCACACCAACCATCTCTCCTTGCAGAA...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGACTGATCAGGGCGTTTaGCAGGAATCGGGGTGCCAG +
Preference number: 4 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVTDQGV*QESGCQ
Trigger: CTGGCACCCCGATTCCTGCCAAACGCCCTGATCAGT...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGGTGGGTGGATACCCTTaGCCTGCAGCTGGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRVGGYP*PAAGCY
Trigger: ATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCAC...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGATCTCGGTGCATCTGTaGGCTGGTGATGCGGTTGTA +
Preference number: 4 (lower is better)
Translates to: LSGASWAQRWVCQKGALMISVHL*AGDAVV
Trigger: TACAACCGCATCACCAGCCCACAGATGCACCGAGAT...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTCAGCAAAGTCCACACTaGTCAGGGCGTTTGGCAGGA +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVQQSPH*SGRLAG
Trigger: TCCTGCCAAACGCCCTGATCAGTGTGGACTTTGCTG...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCACAGCAAAGTCCACACTaGTCAGGGCGTTTGGCAGGA +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSQQSPH*SGRLAG
Trigger: TCCTGCCAAACGCCCTGATCAGTGTGGACTTTGCTG...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTCGTTGCTGGAGCCATTaGACATGTGGTCCGGCAGCC +
Preference number: 4 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFRCWSH*TCGPAA
Trigger: GGCTGCCGGACCACATGTTCAATGGCTCCAGCAACG...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTCCTCAGGGACCTCTGTaGGCTGATTCCCAGCGATGT +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGPQGPL*ADSQRC
Trigger: ACATCGCTGGGAATCAGCTCACAGAGGTCCCTGAGG...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCACTCACGCAGGTCAATaGCACCACAGTCCACTACAC +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMATHAGQ*HHSPLH
Trigger: GTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGT...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGTCCAGCTGGTTGTTCTaGAAGGAGAGATGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: LSGASWAQRWVCQKGALMSSWLF*KERWLV
Trigger: CACCAACCATCTCTCCTTGCAGAACAACCAGCTGGA...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCTGGCAGGAATCGGGGTaGCAGTGTCAGCTTGTTGTT +
Preference number: 4 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGWQESG*QCQLVV
Trigger: AACAACAAGCTGACACTGGCACCCCGATTCCTGCCA...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTCGTGGCGCAGGAAGTTaGTGGACAGGATTAGGATCT +
Preference number: 4 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGRGAGS*WTGLGS
Trigger: AGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACG...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGCGTGGCGCAGGAAGTTaGTGGACAGGATTAGGATCT +
Preference number: 4 (lower is better)
Translates to: ATEQGDNPASPREGPEDKRGAGS*WTGLGS
Trigger: AGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACG...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGCCCTCGACAGGTTGTTaGTGGACAAGTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: DNPASPREGPEDKAHGQLPSTGC*WTSPGT
Trigger: AGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGG...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGTGGCCTGCAGCTGGTTaGTATGTAGCAGCAGGTACT +
Preference number: 4 (lower is better)
Translates to: ATEQGDNPASPREGPEDKWPAAG*YVAAGT
Trigger: AGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCA...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCGGAAGGCATCTCGGTaGATCTGTGGGCTGGTGATG +
Preference number: 4 (lower is better)
Translates to: NPASPREGPEDKAHGQLFRKASR*ICGLVM
Trigger: CATCACCAGCCCACAGATGCACCGAGATGCCTTCCG...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCGCTCAGAACCAGCACTaGCTGATTCTCTTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAAQNQH*LILFLH
Trigger: GTGGAGGAAGAGAATCAGCCAGTGCTGGTTCTGAGC...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGGCTCAGAACCAGCACTaGCTGATTCTCTTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRAQNQH*LILFLH
Trigger: GTGGAGGAAGAGAATCAGCCAGTGCTGGTTCTGAGC...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGTCCACTACACCTTCCTaGGAACAGGCACAATCTCGG +
Preference number: 4 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRSTTPS*EQAQSR
Trigger: CCGAGATTGTGCCTGTTCCCAGGAAGGTGTAGTGGA...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCTCCACTACACCTTCCTaGGAACAGGCACAATCTCGG +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMASTTPS*EQAQSR
Trigger: CCGAGATTGTGCCTGTTCCCAGGAAGGTGTAGTGGA...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGCCATTGAACATGTaGTCCGGCAGCCCGGCATCT +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGEPLNM*SGSPAS
Trigger: AGATGCCGGGCTGCCGGACCACATGTTCAATGGCTC...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGCCCTTGGCCTGCAGCTaGTTGCTATGTAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVPLACS*LLCSSR
Trigger: CCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGG...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTCCCTTGGCCTGCAGCTaGTTGCTATGTAGCAGCAGG +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGPLACS*LLCSSR
Trigger: CCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGG...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCGTGGGTGGATACCCTTaGCCTGCAGCTGGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSVGGYP*PAAGCY
Trigger: ATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCAC...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTTGGAAGGCCAGTGGGTaGATACCCTTGGCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFWKASG*IPLACS
Trigger: GCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCA...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCGTTGCTGGAGCCATTaGACATGTGGTCCGGCAGCC +
Preference number: 4 (lower is better)
Translates to: RLFSESACDLPGHNKKGLRCWSH*TCGPAA
Trigger: GGCTGCCGGACCACATGTTCAATGGCTCCAGCAACG...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAACTCACGCAGGTCAATaGCACCACAGTCCACTACAC +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPTHAGQ*HHSPLH
Trigger: GTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGT...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGCCCTCGACAGGTTGTTaGTGGACAAGTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVPSTGC*WTSPGT
Trigger: AGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGG...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTCCTGTAATCTGGTTGTaGAGGATCATGAGGGTGCGC +
Preference number: 4 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCPVIWL*RIMRVR
Trigger: GCGCACCCTCATGATCCTGCACAACCAGATTACAGG...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCGCAGCAGGCGTAGCTTaGGGAAGGCATCTCGGTGCA +
Preference number: 4 (lower is better)
Translates to: RLFSESACDLPGHNKKGLAAGVA*GRHLGA
Trigger: TGCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGC...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCGCTCAGAACCAGCACTaGCTGATTCTCTTCCTCCAC +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSAQNQH*LILFLH
Trigger: GTGGAGGAAGAGAATCAGCCAGTGCTGGTTCTGAGC...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTGGGGACAGTCGACAGTaGCTGGGCCAGGCTCTGGCT +
Preference number: 4 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCGDSRQ*LGQALA
Trigger: AGCCAGAGCCTGGCCCAGCCACTGTCGACTGTCCCC...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGTCCACTACACCTTCCTaGGAACAGGCACAATCTCGG +
Preference number: 4 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVSTTPS*EQAQSR
Trigger: CCGAGATTGTGCCTGTTCCCAGGAAGGTGTAGTGGA...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGGCGCAGGAAGTTGCTaGACAGGATTAGGATCTCGA +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSGAGSC*TGLGSR
Trigger: TCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCC...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAGGCGCAGGAAGTTGCTaGACAGGATTAGGATCTCGA +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPGAGSC*TGLGSR
Trigger: TCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCC...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCGGGTGGCAGGTGCTTaGGCACGTGGCGCAGGAAGT +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGRVAGA*ARGAGS
Trigger: ACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCG...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTGTGGGTGGATACCCTTaGCCTGCAGCTGGTTGCTAT +
Preference number: 4 (lower is better)
Translates to: NPASPREGPEDKAHGQLFVGGYP*PAAGCY
Trigger: ATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCAC...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGGTTGTGCAGGATCATaGGGGTGCGCACTCGGCGGG +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAGCAGS*GCALGG
Trigger: CCCGCCGAGTGCGCACCCTCATGATCCTGCACAACC...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACCCTCAGGGACCTCTGTaGGCTGATTCCCAGCGATGT +
Preference number: 4 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHPQGPL*ADSQRC
Trigger: ACATCGCTGGGAATCAGCTCACAGAGGTCCCTGAGG...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGAGTAAGATGCTCAAATaGCTCCTCTGGGAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVSKMLK*LLWEPS
Trigger: CGAGGGCTCCCAGAGGAGGCATTTGAGCATCTTACT...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGTTGAGGCTAGTAAGATaGTCAAATGCCTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: ATEQGDNPASPREGPEDKLRLVR*SNASSG
Trigger: CCCAGAGGAGGCATTTGAGCATCTTACTAGCCTCAA...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCTTGAGGCTAGTAAGATaGTCAAATGCCTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMALRLVR*SNASSG
Trigger: CCCAGAGGAGGCATTTGAGCATCTTACTAGCCTCAA...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTTGGCCTGCAGCTGGTTaGTATGTAGCAGCAGGTACT +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGWPAAG*YVAAGT
Trigger: AGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCA...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTTCAATGTCCAAGACCTaGAGGTGTTTCAGCCTCCGG +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGSMSKT*RCFSLR
Trigger: CCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGA...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCCTCGGGGCTCAGGGTaGGGGTGTCACTTCGGCCAA +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAPRGSG*GCHFGQ
Trigger: TTGGCCGAAGTGACACCCCCACCCTGAGCCCCGAGG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGGCTGGGCCAGGCTCTaGCTCCTCGGAGCTCAGAAC +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAGWARL*LLGAQN
Trigger: GTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGCC...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACCTCAAATGCCTCCTCTaGGAGCCCTCGGGATGTCAG +
Preference number: 4 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHLKCLL*EPSGCQ
Trigger: CTGACATCCCGAGGGCTCCCAGAGGAGGCATTTGAG...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCCACAGACCTCAGATTTaGCTTTTGGCCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAHRPQI*LLAKGE
Trigger: CTCACCTTTGGCCAAAAGCCAAATCTGAGGTCTGTG...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTCACAGACCTCAGATTTaGCTTTTGGCCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGHRPQI*LLAKGE
Trigger: CTCACCTTTGGCCAAAAGCCAAATCTGAGGTCTGTG...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTCCAGGTACTCCAGGCTaGACAGCTTCCAGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFPGTPG*TASRRS
Trigger: AGACCTTCTGGAAGCTGTCCAGCCTGGAGTACCTGG...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCATATAGATGCACTGTGTaGAGCTTCTTGAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSYRCTV*SFLRPW
Trigger: CCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATA...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGCTAGCTTATTGTTCTTaGGGTGCAGCTTGTACAGAG +
Preference number: 4 (lower is better)
Translates to: ATEQGDNPASPREGPEDKLAYCS*GAACTE
Trigger: CTCTGTACAAGCTGCACCTCAAGAACAATAAGCTAG...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAATCCAGCTGGTTGTTCTaGAAGGAGAGATGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: LRLQGRDQRTRHMANCFQSSWLF*KERWLV
Trigger: CACCAACCATCTCTCCTTGCAGAACAACCAGCTGGA...TTGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCGCGTTGTTGTATAGATaGACTGTGTGGAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAALLYR*TVWSFL
Trigger: CAAGAAGCTCCACACAGTGCATCTATACAACAACGC...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCGCGATGTCCAGCAGCTaGAGACCAGCAAGGTCCACC +
Preference number: 4 (lower is better)
Translates to: VCVSVRLCREPVWKVICSAMSSS*RPARST
Trigger: GGTGGACCTTGCTGGTCTGCAGCTGCTGGACATCGC...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGCACAGACCTCAGATTTaGCTTTTGGCCAAAGGTGAG +
Preference number: 4 (lower is better)
Translates to: SEKHPATEQGDNPASPREHRPQI*LLAKGE
Trigger: CTCACCTTTGGCCAAAAGCCAAATCTGAGGTCTGTG...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTAGGTGCTTGGGCACGTaGCGCAGGAAGTTGCTGGAC +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGRCLGT*RRKLLD
Trigger: GTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCT...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTTCGACAGGTTGTTGCTaGACAAGTCCAGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGSTGCC*TSPGTP
Trigger: TGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGA...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGTCGACAGGTTGTTGCTaGACAAGTCCAGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVSTGCC*TSPGTP
Trigger: TGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGA...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCACTTCTACGCTCTGGATaGCATTTTTCTCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: PASPREGPEDKAHGQLFPLLRSG*HFSPGA
Trigger: TGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAG...TGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCCTTCTACGCTCTGGATaGCATTTTTCTCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSLLRSG*HFSPGA
Trigger: TGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAG...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTCTTCTACGCTCTGGATaGCATTTTTCTCCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVLLRSG*HFSPGA
Trigger: TGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAG...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCCTGGAAGGCCAGTaGGTGGATACCCTTGGCCTG +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAALEGQ*VDTLGL
Trigger: CAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGC...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTTATAGATGCACTGTGTaGAGCTTCTTGAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGYRCTV*SFLRPW
Trigger: CCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATA...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCCAGATACTCCAGAGATaGGGGGAGCCCCTCAGGGAC +
Preference number: 4 (lower is better)
Translates to: VCVSVRLCREPVWKVICSQILQR*GEPLRD
Trigger: GTCCCTGAGGGGCTCCCCCCATCTCTGGAGTATCTG...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGAGAACCAGCACTGGCTaGTTCTCTTCCTCCACAAAT +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVRTSTG*FSSSTN
Trigger: ATTTGTGGAGGAAGAGAATCAGCCAGTGCTGGTTCT...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCTGTGTGGAGCTTCTTaGGGCCCTGGAAGGCCAGTG +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAALCGAS*GPGRPV
Trigger: CACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGCTAGCTTGTTGTTATaGAGGTACACAGACCTCAGA +
Preference number: 4 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCASLLL*RYTDLR
Trigger: TCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGC...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGCTAGCTTGTTGTTATaGAGGTACACAGACCTCAGA +
Preference number: 4 (lower is better)
Translates to: CSARVTFGCLLGSALGVSASLLL*RYTDLR
Trigger: TCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGC...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCCTCGACAGGTTGTTaGTGGACAAGTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: RLFSESACDLPGHNKKGLPSTGC*WTSPGT
Trigger: AGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGG...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTGCGTTGTTGTATAGATaGACTGTGTGGAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVALLYR*TVWSFL
Trigger: CAAGAAGCTCCACACAGTGCATCTATACAACAACGC...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCTTGTACAGAGCGGGTaGCAGGTGCTTGGGCACGTG +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAALVQSG*QVLGHV
Trigger: CACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTTGGAAGGCCAGTGGGTaGATACCCTTGGCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAWKASG*IPLACS
Trigger: GCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCA...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCATCTCGGTGCATCTGTaGGCTGGTGATGCGGTTGTA +
Preference number: 4 (lower is better)
Translates to: RLFSESACDLPGHNKKGLISVHL*AGDAVV
Trigger: TACAACCGCATCACCAGCCCACAGATGCACCGAGAT...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCCAGCAAAGTCCACACTaGTCAGGGCGTTTGGCAGGA +
Preference number: 4 (lower is better)
Translates to: VCVSVRLCREPVWKVICSQQSPH*SGRLAG
Trigger: TCCTGCCAAACGCCCTGATCAGTGTGGACTTTGCTG...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGCTAGCTTATTGTTCTTaGGGTGCAGCTTGTACAGAG +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVLAYCS*GAACTE
Trigger: CTCTGTACAAGCTGCACCTCAAGAACAATAAGCTAG...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGCTAATCTTGTTATTCTaGAGGTACAGATACTCCAGA +
Preference number: 4 (lower is better)
Translates to: LSGASWAQRWVCQKGALMLILLF*RYRYSR
Trigger: TCTGGAGTATCTGTACCTGCAGAATAACAAGATTAG...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCTCGGGCAGGTCGCCTaGAAACTCACGCAGGTCAAT +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAALGQVA*KLTQVN
Trigger: ATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTACTGATCAGGGCGTTTaGCAGGAATCGGGGTGCCAG +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAATDQGV*QESGCQ
Trigger: CTGGCACCCCGATTCCTGCCAAACGCCCTGATCAGT...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTCCAGGTACTCCAGGCTaGACAGCTTCCAGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCPGTPG*TASRRS
Trigger: AGACCTTCTGGAAGCTGTCCAGCCTGGAGTACCTGG...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCCAGGTACTCCAGGCTaGACAGCTTCCAGAAGGTCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGPGTPG*TASRRS
Trigger: AGACCTTCTGGAAGCTGTCCAGCCTGGAGTACCTGG...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCTCGACAGGTTGTTGCTaGACAAGTCCAGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: RLFSESACDLPGHNKKGLSTGCC*TSPGTP
Trigger: TGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGA...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp CCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCCTCATCTTTGTCCTTaGAACCATTACCAAACTCAA +
Preference number: 4 (lower is better)
Translates to: PQSKETTLRLQGRDQRTRPHLCP*NHYQTQ
Trigger: TTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGG...CCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR TCA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCAGAACCAGCACTGGCTaGTTCTCTTCCTCCACAAAT +
Preference number: 4 (lower is better)
Translates to: RLFSESACDLPGHNKKGLRTSTG*FSSSTN
Trigger: ATTTGTGGAGGAAGAGAATCAGCCAGTGCTGGTTCT...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTACTCACGCAGGTCAATaGCACCACAGTCCACTACAC +
Preference number: 4 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCTHAGQ*HHSPLH
Trigger: GTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGT...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTAGTAAGATGCTCAAATaGCTCCTCTGGGAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCSKMLK*LLWEPS
Trigger: CGAGGGCTCCCAGAGGAGGCATTTGAGCATCTTACT...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTAGTAAGATGCTCAAATaGCTCCTCTGGGAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGSKMLK*LLWEPS
Trigger: CGAGGGCTCCCAGAGGAGGCATTTGAGCATCTTACT...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCTGGCAGGAATCGGGGTaGCAGTGTCAGCTTGTTGTT +
Preference number: 4 (lower is better)
Translates to: VCVSVRLCREPVWKVICSWQESG*QCQLVV
Trigger: AACAACAAGCTGACACTGGCACCCCGATTCCTGCCA...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTGCTAGCTTGTTGTTATaGAGGTACACAGACCTCAGA +
Preference number: 4 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFASLLL*RYTDLR
Trigger: TCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGC...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTTGGCCTGCAGCTGGTTaGTATGTAGCAGCAGGTACT +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGWPAAG*YVAAGT
Trigger: AGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCA...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTTTCTGCAAGGAGAGATaGTTGGTGTGCTCGGGCAGG +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAAFCKER*LVCSGR
Trigger: CCTGCCCGAGCACACCAACCATCTCTCCTTGCAGAA...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCGGCGCAGGAAGTTGCTaGACAGGATTAGGATCTCGA +
Preference number: 4 (lower is better)
Translates to: VCVSVRLCREPVWKVICSGAGSC*TGLGSR
Trigger: TCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCC...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTCCTCATCTTTGTCCTTaGAACCATTACCAAACTCAA +
Preference number: 4 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCPHLCP*NHYQTQ
Trigger: TTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGG...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
3UTR CAA 72 bp TGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTaGGAAGGTCATATGCAGCTGGCTATCTACGTGGCC +
Preference number: 4 (lower is better)
Translates to: CVCQCEIVQRAS*EGHMQLAIYVA
Trigger: GGCCACGTAGATAGCCAGCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCGTGGCGCAGGAAGTTaGTGGACAGGATTAGGATCT +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAARGAGS*WTGLGS
Trigger: AGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGTACCAAACTCAAAGTTaGCTTCAATGTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVYQTQS*LQCPRP
Trigger: AGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTA...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTTTGAGGCTAGTAAGATaGTCAAATGCCTCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCLRLVR*SNASSG
Trigger: CCCAGAGGAGGCATTTGAGCATCTTACTAGCCTCAA...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTGCGTTGTTGTATAGATaGACTGTGTGGAGCTTCTTG +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGALLYR*TVWSFL
Trigger: CAAGAAGCTCCACACAGTGCATCTATACAACAACGC...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTCTAATCTTGTTATTCTaGAGGTACAGATACTCCAGA +
Preference number: 4 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFLILLF*RYRYSR
Trigger: TCTGGAGTATCTGTACCTGCAGAATAACAAGATTAG...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TCCTTAAACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACTCAATGTCCAAGACCTaGAGGTGTTTCAGCCTCCGG +
Preference number: 4 (lower is better)
Translates to: SLNKTKGTQNFPAELKTNSMSKT*RCFSLR
Trigger: CCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGA...GTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTTTAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTTACCAAACTCAAAGTTaGCTTCAATGTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGYQTQS*LQCPRP
Trigger: AGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTA...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CCA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTCCTCATCTTTGTCCTTaGAACCATTACCAAACTCAA +
Preference number: 4 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCPHLCP*NHYQTQ
Trigger: TTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGG...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCTAATCTTGTTATTCTaGAGGTACAGATACTCCAGA +
Preference number: 4 (lower is better)
Translates to: NKTKGTQNFPAELKTNAALILLF*RYRYSR
Trigger: TCTGGAGTATCTGTACCTGCAGAATAACAAGATTAG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR GCA 90 bp TCCTTAAACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACTACCAAACTCAAAGTTaGCTTCAATGTCCAAGACCT +
Preference number: 4 (lower is better)
Translates to: SLNKTKGTQNFPAELKTNYQTQS*LQCPRP
Trigger: AGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTA...GTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTTTAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS TCA 90 bp CCCAGGCACGGGGTCCCAGGGCCCGGCTTCGCAGTCGGTTGCCTGTaGGGTAGAGTTCCCGAAGCTGGGCCATGCCAGCTAGTGCCCCAC +
Preference number: 5 (lower is better)
Translates to: PRHGVPGPGFAVGCL*GRVPEAGPCQLVPH
Trigger: GTGGGGCACTAGCTGGCATGGCCCAGCTTCGGGAACTCTACCTCACAGGCAACCGACTGCGAAGCCGGGCCCTGGGACCCCGTGCCTGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS GCA 90 bp CTCCTCGGGGCTCAGGGTGGGGGTGTCACTTCGGCCAAACACAGGTaGCCTCACAGGCAGCACAGGGCCCAGGAAGAGCTGAAGCACCAG +
Preference number: 5 (lower is better)
Translates to: LLGAQGGGVTSAKHR*PHRQHRAQEELKHQ
Trigger: CTGGTGCTTCAGCTCTTCCTGGGCCCTGTGCTGCCTGTGAGGGCACCTGTGTTTGGCCGAAGTGACACCCCCACCCTGAGCCCCGAGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp TCAAATGCCTCCTCTGGGAGCCCTCGGGATGTCAGGCGGTTGTTCTaGAGGTTCAGCGTCTCCAGCCGCTGCAGCCGGGACAGCTCCTCG +
Preference number: 5 (lower is better)
Translates to: SNASSGSPRDVRRLF*RFSVSSRCSRDSSS
Trigger: CGAGGAGCTGTCCCGGCTGCAGCGGCTGGAGACGCTGAACCTGCAGAACAACCGCCTGACATCCCGAGGGCTCCCAGAGGAGGCATTTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCGCGGGTGGCAGGTGCTaGGGCACGTGGCGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSAGGRC*GTWRRK
Trigger: CTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGC...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGGCGGGTGGCAGGTGCTaGGGCACGTGGCGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVAGGRC*GTWRRK
Trigger: CTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGC...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGCGGGTGGCAGGTGCTaGGGCACGTGGCGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: SEKHPATEQGDNPASPREAGGRC*GTWRRK
Trigger: CTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGC...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp GGACCAGGCTGCGGGGAAGACCCGCTGGGACCCTCGACAGGTTGTTaGTGGACAAGTCCAGGTACTCCAGGCTGGACAGCTTCCAGAAGG +
Preference number: 5 (lower is better)
Translates to: GPGCGEDPLGPSTGC*WTSPGTPGWTASRR
Trigger: CCTTCTGGAAGCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 90 bp CGGGGCAGGCCGCTGGGCACACGTTCCAGCGCGTTGTTGTATAGATaGACTGTGTGGAGCTTCTTGAGGCCCTGGAAGGCCAGTGGGTGG +
Preference number: 5 (lower is better)
Translates to: RGRPLGTRSSALLYR*TVWSFLRPWKASGW
Trigger: CCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGTGCCCAGCGGCCTGCCCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 90 bp CTACACCTTCCTGGGAACAGGCACAATCTCGGGGACAGTCGACAGTaGCTGGGCCAGGCTCTGGCTCCTCGGAGCTCAGAACCAGCACTG +
Preference number: 5 (lower is better)
Translates to: LHLPGNRHNLGDSRQ*LGQALAPRSSEPAL
Trigger: CAGTGCTGGTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGTCCCCGAGATTGTGCCTGTTCCCAGGAAGGTGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp CCAGGCTGCGGGGAAGACCCGCTGGGACCCTCGACAGGTTGTTGCTaGACAAGTCCAGGTACTCCAGGCTGGACAGCTTCCAGAAGGTCT +
Preference number: 5 (lower is better)
Translates to: PGCGEDPLGPSTGCC*TSPGTPGWTASRRS
Trigger: AGACCTTCTGGAAGCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp AGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGTTCCAGAAGGTCTCGTaGTCCAGACCCTCGTCGGTC +
Preference number: 5 (lower is better)
Translates to: STRPQSKETTLRLQGRDQFQKVS*SRPSSV
Trigger: GACCGACGAGGGTCTGGACAACGAGACCTTCTGGAA...CTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp CTACGCTCTGGATGGCATTTTTCTCCAGGTGCAGCAGGACCAGGCTaGGGGGAAGACCCGCTGGGACCCTCGACAGGTTGTTGCTGGACA +
Preference number: 5 (lower is better)
Translates to: LRSGWHFSPGAAGPG*GEDPLGPSTGCCWT
Trigger: TGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGCCATCCAGAGCGTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 90 bp GTCAGCACATCAGCTTCTACGCTCTGGATGGCATTTTTCTCCAGGTaGAGCAGGACCAGGCTGCGGGGAAGACCCGCTGGGACCCTCGAC +
Preference number: 5 (lower is better)
Translates to: VSTSASTLWMAFFSR*SRTRLRGRPAGTLD
Trigger: GTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAGCTGATGTGCTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 90 bp GGCCCTGGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTGGTTaGTATGTAGCAGCAGGTACTCCAGGTTGCGGATGGGTGTCAGCA +
Preference number: 5 (lower is better)
Translates to: GPGRPVGGYPWPAAG*YVAAGTPGCGWVSA
Trigger: TGCTGACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 90 bp ACAGGCACAATCTCGGGGACAGTCGACAGTGGCTGGGCCAGGCTCTaGCTCCTCGGAGCTCAGAACCAGCACTGGCTGATTCTCTTCCTC +
Preference number: 5 (lower is better)
Translates to: TGTISGTVDSGWARL*LLGAQNQHWLILFL
Trigger: GAGGAAGAGAATCAGCCAGTGCTGGTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGTCCCCGAGATTGTGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCCGGGATGTCAGGCGGTaGTTCTGCAGGTTCAGCGTC +
Preference number: 5 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGRDVRR*FCRFSV
Trigger: GACGCTGAACCTGCAGAACAACCGCCTGACATCCCG...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCGGGACCCTCGACAGGTaGTTGCTGGACAAGTCCAGG +
Preference number: 5 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAGTLDR*LLDKSR
Trigger: CCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCC...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGACTGTGTGGAGCTTCTaGAGGCCCTGGAAGGCCAGT +
Preference number: 5 (lower is better)
Translates to: LSGASWAQRWVCQKGALMTVWSF*RPWKAS
Trigger: ACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGT...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AATAGGGGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTCGCAGCAGGCGTAGCTaGCGGAAGGCATCTCGGTGC +
Preference number: 5 (lower is better)
Translates to: NRGEGSCLSLPGQCGLRGRSRRS*RKASRC
Trigger: GCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGCG...ACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCCCCTATT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS TCA 90 bp GCTGGGCCAGGCTCTGGCTCCTCGGAGCTCAGAACCAGCACTGGCTaGTTCTCTTCCTCCACAAATTCATTCTCCTCGGGGCTCAGGGTG +
Preference number: 5 (lower is better)
Translates to: AGPGSGSSELRTSTG*FSSSTNSFSSGLRV
Trigger: CACCCTGAGCCCCGAGGAGAATGAATTTGTGGAGGAAGAGAATCAGCCAGTGCTGGTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp ATTTTTCTCCAGGTGCAGCAGGACCAGGCTGCGGGGAAGACCCGCTaGGACCCTCGACAGGTTGTTGCTGGACAAGTCCAGGTACTCCAG +
Preference number: 5 (lower is better)
Translates to: IFLQVQQDQAAGKTR*DPRQVVAGQVQVLQ
Trigger: CTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 90 bp TTGAGGCCCTGGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTaGTTGCTATGTAGCAGCAGGTACTCCAGGTTGCGGATGGGTGTC +
Preference number: 5 (lower is better)
Translates to: LRPWKASGWIPLACS*LLCSSRYSRLRMGV
Trigger: GACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCTCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTCGGGATGTCAGGCGGTaGTTCTGCAGGTTCAGCGTC +
Preference number: 5 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCRDVRR*FCRFSV
Trigger: GACGCTGAACCTGCAGAACAACCGCCTGACATCCCG...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACGTTGCTGGAGCCATaGAACATGTGGTCCGGCAGC +
Preference number: 5 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGTLLEP*NMWSGS
Trigger: GCTGCCGGACCACATGTTCAATGGCTCCAGCAACGT...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGAAGGGGGCGCTCATGACGTGGCGCAGGAAGTaGCTGGACAGGATTAGGATC +
Preference number: 5 (lower is better)
Translates to: LSGASWAQRWVCQKGALMTWRRK*LDRIRI
Trigger: GATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGT...CATGAGCGCCCCCTTCTGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTTTCTTGAGGTGCAGCTaGTACAGAGCGGGTGGCAGG +
Preference number: 5 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGFLRCS*YRAGGR
Trigger: CCTGCCACCCGCTCTGTACAAGCTGCACCTCAAGAA...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTTTCCAGAAGGTCTCGTaGTCCAGACCCTCGTCGGTC +
Preference number: 5 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGFQKVS*SRPSSV
Trigger: GACCGACGAGGGTCTGGACAACGAGACCTTCTGGAA...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTGGGACCCTCGACAGGTaGTTGCTGGACAAGTCCAGG +
Preference number: 5 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVGTLDR*LLDKSR
Trigger: CCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCC...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGAGCAGGTACTCCAGGTaGCGGATGGGTGTCAGCACA +
Preference number: 5 (lower is better)
Translates to: DNPASPREGPEDKAHGQLSRYSR*RMGVST
Trigger: TGTGCTGACACCCATCCGCAACCTGGAGTACCTGCT...CAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCACTGTGTGGAGCTTCTaGAGGCCCTGGAAGGCCAGT +
Preference number: 5 (lower is better)
Translates to: KETTLRLQGRDQRTRHMATVWSF*RPWKAS
Trigger: ACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGT...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGCCAGCTCATTCCGCTaGACCTTGAGCACGTGTACG +
Preference number: 5 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGASSFR*TLSTCT
Trigger: CGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGC...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp GGTTGGTGTGCTCGGGCAGGTCGCCTGGAAACTCACGCAGGTCAATaGCACCACAGTCCACTACACCTTCCTGGGAACAGGCACAATCTC +
Preference number: 5 (lower is better)
Translates to: GWCARAGRLETHAGQ*HHSPLHLPGNRHNL
Trigger: GAGATTGTGCCTGTTCCCAGGAAGGTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAGCACACCAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp GGAAACTCACGCAGGTCAATGCCACCACAGTCCACTACACCTTCCTaGGAACAGGCACAATCTCGGGGACAGTCGACAGTGGCTGGGCCA +
Preference number: 5 (lower is better)
Translates to: GNSRRSMPPQSTTPS*EQAQSRGQSTVAGP
Trigger: TGGCCCAGCCACTGTCGACTGTCCCCGAGATTGTGCCTGTTCCCAGGAAGGTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp TTGAGGTGCAGCTTGTACAGAGCGGGTGGCAGGTGCTTGGGCACGTaGCGCAGGAAGTTGCTGGACAGGATTAGGATCTCGACGTTGCTG +
Preference number: 5 (lower is better)
Translates to: LRCSLYRAGGRCLGT*RRKLLDRIRISTLL
Trigger: CAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAGCTGCACCTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 90 bp CCAGGTTGCGGATGGGTGTCAGCACATCAGCTTCTACGCTCTGGATaGCATTTTTCTCCAGGTGCAGCAGGACCAGGCTGCGGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: PGCGWVSAHQLLRSG*HFSPGAAGPGCGED
Trigger: GTCTTCCCCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAGCTGATGTGCTGACACCCATCCGCAACCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCGGGATGTCAGGCGGTaGTTCTGCAGGTTCAGCGTC +
Preference number: 5 (lower is better)
Translates to: NPASPREGPEDKAHGQLFRDVRR*FCRFSV
Trigger: GACGCTGAACCTGCAGAACAACCGCCTGACATCCCG...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGACGTGGCGCAGGAAGTaGCTGGACAGGATTAGGATC +
Preference number: 5 (lower is better)
Translates to: ATEQGDNPASPREGPEDKTWRRK*LDRIRI
Trigger: GATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGT...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTTTCTTGAGGTGCAGCTaGTACAGAGCGGGTGGCAGG +
Preference number: 5 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCFLRCS*YRAGGR
Trigger: CCTGCCACCCGCTCTGTACAAGCTGCACCTCAAGAA...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCCCAGCAGTAGGAGTGGGGACCCTCGACAGGTaGTTGCTGGACAAGTCCAGG +
Preference number: 5 (lower is better)
Translates to: SACDLPGHNKKGLPAVGVGTLDR*LLDKSR
Trigger: CCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCC...CACTCCTACTGCTGGGAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACCGCAGCAGGCGTAGCTaGCGGAAGGCATCTCGGTGC +
Preference number: 5 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHRSRRS*RKASRC
Trigger: GCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGCG...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGCCTGGAGGCAGTGTTaGCAGACGGTTGCCAGACAA +
Preference number: 5 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCAWRQC*QTVARQ
Trigger: TTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGC...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGGCCTGGAGGCAGTGTTaGCAGACGGTTGCCAGACAA +
Preference number: 5 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVAWRQC*QTVARQ
Trigger: TTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGC...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp CGTGTACGTTTTTCGGCAGGCCTGGAGGCAGTGTTTGCAGACGGTTaGCAGACAAGTCAAGTGAACGCAGCAGGCGTAGCTTGCGGAAGG +
Preference number: 5 (lower is better)
Translates to: RVRFSAGLEAVFADG*QTSQVNAAGVACGR
Trigger: CCTTCCGCAAGCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGCCTGCCGAAAAACGTACACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CCA 90 bp GCTGATTCTCTTCCTCCACAAATTCATTCTCCTCGGGGCTCAGGGTaGGGGTGTCACTTCGGCCAAACACAGGTGCCCTCACAGGCAGCA +
Preference number: 5 (lower is better)
Translates to: ADSLPPQIHSPRGSG*GCHFGQTQVPSQAA
Trigger: TGCTGCCTGTGAGGGCACCTGTGTTTGGCCGAAGTGACACCCCCACCCTGAGCCCCGAGGAGAATGAATTTGTGGAGGAAGAGAATCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp TACTCCAGGTTGCGGATGGGTGTCAGCACATCAGCTTCTACGCTCTaGATGGCATTTTTCTCCAGGTGCAGCAGGACCAGGCTGCGGGGA +
Preference number: 5 (lower is better)
Translates to: YSRLRMGVSTSASTL*MAFFSRCSRTRLRG
Trigger: TCCCCGCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAGCTGATGTGCTGACACCCATCCGCAACCTGGAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGTTGGCCTGCAGCTGGTaGCTATGTAGCAGCAGGTAC +
Preference number: 5 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVLACSW*LCSSRY
Trigger: GTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAA...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCAAGCCAGCTCATTCCGCTaGACCTTGAGCACGTGTACG +
Preference number: 5 (lower is better)
Translates to: LRLQGRDQRTRHMANCFQASSFR*TLSTCT
Trigger: CGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGC...TTGGAAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GGAGAGGGTAGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTAAGATCCCCTTAAGGTaGGGAGTGGAGTCAAAGGCG +
Preference number: 5 (lower is better)
Translates to: GEGSCLSLPGQCGLRGEGKIPLR*GVESKA
Trigger: CGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTT...ACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCTACCCTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCGAGCCCACAGCCAGCTaGTTGAACCTGAGAAAGATC +
Preference number: 5 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGEPTAS*LNLRKI
Trigger: GATCTTTCTCAGGTTCAACAAGCTGGCTGTGGGCTC...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp ACCTTGAGCACGTGTACGTTTTTCGGCAGGCCTGGAGGCAGTGTTTaGAGACGGTTGCCAGACAAGTCAAGTGAACGCAGCAGGCGTAGC +
Preference number: 5 (lower is better)
Translates to: TLSTCTFFGRPGGSV*RRLPDKSSERSRRS
Trigger: GCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGCCTGCCGAAAAACGTACACGTGCTCAAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CCA 90 bp GTTGTTCTGCAAGGAGAGATGGTTGGTGTGCTCGGGCAGGTCGCCTaGAAACTCACGCAGGTCAATGCCACCACAGTCCACTACACCTTC +
Preference number: 5 (lower is better)
Translates to: VVLQGEMVGVLGQVA*KLTQVNATTVHYTF
Trigger: GAAGGTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAGCACACCAACCATCTCTCCTTGCAGAACAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp AGCGCGTTGTTGTATAGATGCACTGTGTGGAGCTTCTTGAGGCCCTaGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTGGTTGCTA +
Preference number: 5 (lower is better)
Translates to: SALLYRCTVWSFLRP*KASGWIPLACSWLL
Trigger: TAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp AAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCCCGGCATCTGCTAGCTaGTTGTTATGCAGGTACACA +
Preference number: 5 (lower is better)
Translates to: KETTLRLQGRDQRTRHMAPASAS*LLCRYT
Trigger: TGTGTACCTGCATAACAACAAGCTAGCAGATGCCGG...GGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTACGTTGCTGGAGCCATaGAACATGTGGTCCGGCAGC +
Preference number: 5 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFTLLEP*NMWSGS
Trigger: GCTGCCGGACCACATGTTCAATGGCTCCAGCAACGT...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTTTCCAGAAGGTCTCGTaGTCCAGACCCTCGTCGGTC +
Preference number: 5 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFFQKVS*SRPSSV
Trigger: GACCGACGAGGGTCTGGACAACGAGACCTTCTGGAA...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTTTGGCCTGCAGCTGGTaGCTATGTAGCAGCAGGTAC +
Preference number: 5 (lower is better)
Translates to: NPASPREGPEDKAHGQLFLACSW*LCSSRY
Trigger: GTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAA...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTACTGTGTGGAGCTTCTaGAGGCCCTGGAAGGCCAGT +
Preference number: 5 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFTVWSF*RPWKAS
Trigger: ACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGT...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTCGTTCCAGCGCGTTGTaGTATAGATGCACTGTGTGG +
Preference number: 5 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCRSSAL*YRCTVW
Trigger: CCACACAGTGCATCTATACAACAACGCGCTGGAACG...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGCCTCAGATTTGGCTTTaGGCCAAAGGTGAGTCCATA +
Preference number: 5 (lower is better)
Translates to: ATEQGDNPASPREGPEDKPQIWL*AKGESI
Trigger: TATGGACTCACCTTTGGCCAAAAGCCAAATCTGAGG...CTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGCCGGCATCTGCTAGCTaGTTGTTATGCAGGTACACA +
Preference number: 5 (lower is better)
Translates to: SEKHPATEQGDNPASPREPASAS*LLCRYT
Trigger: TGTGTACCTGCATAACAACAAGCTAGCAGATGCCGG...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCAGCAGGTACTCCAGGTaGCGGATGGGTGTCAGCACA +
Preference number: 5 (lower is better)
Translates to: RLFSESACDLPGHNKKGLSRYSR*RMGVST
Trigger: TGTGCTGACACCCATCCGCAACCTGGAGTACCTGCT...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGCCTGTAATCTGGTaGTGCAGGATCATGAGGGTG +
Preference number: 5 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSMPVIW*CRIMRV
Trigger: CACCCTCATGATCCTGCACAACCAGATTACAGGCAT...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGATGCCTGTAATCTGGTaGTGCAGGATCATGAGGGTG +
Preference number: 5 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVMPVIW*CRIMRV
Trigger: CACCCTCATGATCCTGCACAACCAGATTACAGGCAT...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTCGCAGCAGGCGTAGCTaGCGGAAGGCATCTCGGTGC +
Preference number: 5 (lower is better)
Translates to: NKTKGTQNFPAELKTNAARSRRS*RKASRC
Trigger: GCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGCG...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGGCTGTTCTCTGAAAGTGCCTGTGACCTGCCAGGGCACAACAAAAAGGGACTCGCCTGGAGGCAGTGTTaGCAGACGGTTGCCAGACAA +
Preference number: 5 (lower is better)
Translates to: RLFSESACDLPGHNKKGLAWRQC*QTVARQ
Trigger: TTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGC...GAGTCCCTTTTTGTTGTGCCCTGGCAGGTCACAGGCACTTTCAGAGAACAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTAAGATCCCCTTAAGGTaGGGAGTGGAGTCAAAGGCG +
Preference number: 5 (lower is better)
Translates to: NPASPREGPEDKAHGQLFKIPLR*GVESKA
Trigger: CGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTT...AAACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp CTGGACAGGATTAGGATCTCGACGTTGCTGGAGCCATTGAACATGTaGTCCGGCAGCCCGGCATCTGCTAGCTTGTTGTTATGCAGGTAC +
Preference number: 5 (lower is better)
Translates to: LDRIRISTLLEPLNM*SGSPASASLLLCRY
Trigger: GTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp TGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGTCAGCATCTGCTAGCTTGTaGTTATGCAGGTACACAGAC +
Preference number: 5 (lower is better)
Translates to: CSARVTFGCLLGSALGVSASASL*LCRYTD
Trigger: GTCTGTGTACCTGCATAACAACAAGCTAGCAGATGC...TGACACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTGCATCTGCTAGCTTGTaGTTATGCAGGTACACAGAC +
Preference number: 5 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCASASL*LCRYTD
Trigger: GTCTGTGTACCTGCATAACAACAAGCTAGCAGATGC...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCGGAACGGCACTAATCTaGTTATTCTGCAGGTACAGA +
Preference number: 5 (lower is better)
Translates to: HRARRQPCVSKGGTRGQGGTALI*LFCRYR
Trigger: TCTGTACCTGCAGAATAACAAGATTAGTGCCGTTCC...GCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS TCA 90 bp GGAAGTTGCTGGACAGGATTAGGATCTCGACGTTGCTGGAGCCATTaGACATGTGGTCCGGCAGCCCGGCATCTGCTAGCTTGTTGTTAT +
Preference number: 5 (lower is better)
Translates to: GSCWTGLGSRRCWSH*TCGPAARHLLACCY
Trigger: ATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTTTCTTGAGGTGCAGCTaGTACAGAGCGGGTGGCAGG +
Preference number: 5 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCFLRCS*YRAGGR
Trigger: CCTGCCACCCGCTCTGTACAAGCTGCACCTCAAGAA...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTAGCAGGTACTCCAGGTaGCGGATGGGTGTCAGCACA +
Preference number: 5 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCSRYSR*RMGVST
Trigger: TGTGCTGACACCCATCCGCAACCTGGAGTACCTGCT...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACCGTTCCAGCGCGTTGTaGTATAGATGCACTGTGTGG +
Preference number: 5 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHRSSAL*YRCTVW
Trigger: CCACACAGTGCATCTATACAACAACGCGCTGGAACG...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTGCCAGCTCATTCCGCTaGACCTTGAGCACGTGTACG +
Preference number: 5 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCASSFR*TLSTCT
Trigger: CGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGC...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGGGAACGGCACTAATCTaGTTATTCTGCAGGTACAGA +
Preference number: 5 (lower is better)
Translates to: SEKHPATEQGDNPASPREGTALI*LFCRYR
Trigger: TCTGTACCTGCAGAATAACAAGATTAGTGCCGTTCC...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTGCCACGAGCCCACAGCCAGCTaGTTGAACCTGAGAAAGATC +
Preference number: 5 (lower is better)
Translates to: NQRYPELPCRTEDQRSCHEPTAS*LNLRKI
Trigger: GATCTTTCTCAGGTTCAACAAGCTGGCTGTGGGCTC...GTGGCAGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGTGAAAAGCACCCGGCCACAGAGCAAGGAGACAACCCTGCGTCTCCAAGGGAGTCCTCTTCCTCATCTTaGTCCTTGGAACCATTACCA +
Preference number: 5 (lower is better)
Translates to: SEKHPATEQGDNPASPRESSSSS*SLEPLP
Trigger: TGGTAATGGTTCCAAGGACAAAGATGAGGAAGAGGA...CTCCCTTGGAGACGCAGGGTTGTCTCCTTGCTCTGTGGCCGGGTGCTTTTCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp CTTAGTGAGATAATTGGCAGCAAAGTCCACACTGATCAGGGCGTTTaGCAGGAATCGGGGTGCCAGTGTCAGCTTGTTGTTGGCCAGGTA +
Preference number: 5 (lower is better)
Translates to: LSEIIGSKVHTDQGV*QESGCQCQLVVGQV
Trigger: TACCTGGCCAACAACAAGCTGACACTGGCACCCCGATTCCTGCCAAACGCCCTGATCAGTGTGGACTTTGCTGCCAATTATCTCACTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS-3UTR CAA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTACGTTGCTGGAGCCATaGAACATGTGGTCCGGCAGC +
Preference number: 5 (lower is better)
Translates to: NKTKGTQNFPAELKTNAATLLEP*NMWSGS
Trigger: GCTGCCGGACCACATGTTCAATGGCTCCAGCAACGT...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTACGTGGCGCAGGAAGTaGCTGGACAGGATTAGGATC +
Preference number: 5 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGTWRRK*LDRIRI
Trigger: GATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGT...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AGCTGCCTGAGTCTACCAGGCCAGTGTGGACTCAGAGGTGAGGGTGTGTGTGTGTTACCAAACTCAAAGTaGCCTTCAATGTCCAAGACC +
Preference number: 5 (lower is better)
Translates to: SCLSLPGQCGLRGEGVCVLPNSK*PSMSKT
Trigger: GGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAA...CACACACACACCCTCACCTCTGAGTCCACACTGGCCTGGTAGACTCAGGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACTGTGTTCAGCCCGTGTGACTTTCGGGTGCCTCTTGGGCTCAGCGTTGGGTGTTTACCAAACTCAAAGTaGCCTTCAATGTCCAAGACC +
Preference number: 5 (lower is better)
Translates to: TVFSPCDFRVPLGLSVGCLPNSK*PSMSKT
Trigger: GGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAA...ACACCCAACGCTGAGCCCAAGAGGCACCCGAAAGTCACACGGGCTGAACACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp ACAGGCCTGGGCTGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCTCCTCATCTTTGTCCTaGGAACCATTACCAAACTCA +
Preference number: 5 (lower is better)
Translates to: TGLGCRKESGSPSSWVSSSSSLS*EPLPNS
Trigger: TGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGA...GGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCAGCCCAGGCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp CAACCCTGCGTCTCCAAGGGAGGGACCAGAGGACAAGGCACATGGCCAACTGTTTCCTCATCTTTGTCCTaGGAACCATTACCAAACTCA +
Preference number: 5 (lower is better)
Translates to: QPCVSKGGTRGQGTWPTVSSSLS*EPLPNS
Trigger: TGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGA...AACAGTTGGCCATGTGCCTTGTCCTCTGGTCCCTCCCTTGGAGACGCAGGGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp AACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGCAGCTTTGGCCTGCAGCTGGTaGCTATGTAGCAGCAGGTAC +
Preference number: 5 (lower is better)
Translates to: NKTKGTQNFPAELKTNAALACSW*LCSSRY
Trigger: GTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAA...AGCTGCGTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp TGCAGAAAGGAGTCCGGTAGTCCATCGTCCTGGGTTTCATCCATGTCACTTTGTCGTTCCAGCGCGTTGTaGTATAGATGCACTGTGTGG +
Preference number: 5 (lower is better)
Translates to: CRKESGSPSSWVSSMSLCRSSAL*YRCTVW
Trigger: CCACACAGTGCATCTATACAACAACGCGCTGGAACG...ACAAAGTGACATGGATGAAACCCAGGACGATGGACTACCGGACTCCTTTCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTGGAACGGCACTAATCTaGTTATTCTGCAGGTACAGA +
Preference number: 5 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFGTALI*LFCRYR
Trigger: TCTGTACCTGCAGAATAACAAGATTAGTGCCGTTCC...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCAAGATCCCCTTAAGGTaGGGAGTGGAGTCAAAGGCG +
Preference number: 5 (lower is better)
Translates to: VCVSVRLCREPVWKVICSKIPLR*GVESKA
Trigger: CGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTT...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTTCCTCTTCCTCATCTTaGTCCTTGGAACCATTACCA +
Preference number: 5 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFSSSSS*SLEPLP
Trigger: TGGTAATGGTTCCAAGGACAAAGATGAGGAAGAGGA...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTATGCCTGTAATCTGGTaGTGCAGGATCATGAGGGTG +
Preference number: 5 (lower is better)
Translates to: VCVCVCQCEIVQRASLEGMPVIW*CRIMRV
Trigger: CACCCTCATGATCCTGCACAACCAGATTACAGGCAT...ACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACACACACACACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GACACATTGCTGGAAGGGGTGGGACACGAGACTGTGTTCAGCCCGTGTGACTTTTCCTCATCTTTGTCCTaGGAACCATTACCAAACTCA +
Preference number: 5 (lower is better)
Translates to: DTLLEGVGHETVFSPCDFSSSLS*EPLPNS
Trigger: TGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGA...AAAGTCACACGGGCTGAACACAGTCTCGTGTCCCACCCCTTCCAGCAATGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 90 bp CCTCTTCCTCATCTTTGTCCTTGGAACCATTACCAAACTCAAAGTTaGCTTCAATGTCCAAGACCTGCAGGTGTTTCAGCCTCCGGAAGG +
Preference number: 5 (lower is better)
Translates to: PLPHLCPWNHYQTQS*LQCPRPAGVSASGR
Trigger: CCTTCCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGAAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS-3UTR CAA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCCCTCAGATTTGGCTTTaGGCCAAAGGTGAGTCCATA +
Preference number: 5 (lower is better)
Translates to: VCVSVRLCREPVWKVICSPQIWL*AKGESI
Trigger: TATGGACTCACCTTTGGCCAAAAGCCAAATCTGAGG...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp GTGTGTGTCAGTGTGAGATTGTGCAGAGAGCCAGTTTGGAAGGTCATATGCAGCGCATCTGCTAGCTTGTaGTTATGCAGGTACACAGAC +
Preference number: 5 (lower is better)
Translates to: VCVSVRLCREPVWKVICSASASL*LCRYTD
Trigger: GTCTGTGTACCTGCATAACAACAAGCTAGCAGATGC...GCTGCATATGACCTTCCAAACTGGCTCTCTGCACAATCTCACACTGACACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS-3UTR CAA 90 bp TCCTTAAACAAAACCAAAGGTACCCAGAACTTCCCTGCAGAACTGAAGACCAACGAGCCCACAGCCAGCTaGTTGAACCTGAGAAAGATC +
Preference number: 5 (lower is better)
Translates to: SLNKTKGTQNFPAELKTNEPTAS*LNLRKI
Trigger: GATCTTTCTCAGGTTCAACAAGCTGGCTGTGGGCTC...GTTGGTCTTCAGTTCTGCAGGGAAGTTCTGGGTACCTTTGGTTTTGTTTAAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 90 bp CATCTTCCTCTTCCTCCTCTTCTTCCTCTTCCTCATCTTTGTCCTTaGAACCATTACCAAACTCAAAGTTGCCTTCAATGTCCAAGACCT +
Preference number: 5 (lower is better)
Translates to: HLPLPPLLPLPHLCP*NHYQTQSCLQCPRP
Trigger: AGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS TCA 72 bp GGGGTCCCAGGGCCCGGCTTCGCAGTCGGTTGCCTGTaGGGTAGAGTTCCCGAAGCTGGGCCATGCCAGCTA +
Preference number: 6 (lower is better)
Translates to: GVPGPGFAVGCL*GRVPEAGPCQL
Trigger: TAGCTGGCATGGCCCAGCTTCGGGAACTCTACCTCACAGGCAACCGACTGCGAAGCCGGGCCCTGGGACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS GCA 72 bp TCCTCTGGGAGCCCTCGGGATGTCAGGCGGTTGTTCTaGAGGTTCAGCGTCTCCAGCCGCTGCAGCCGGGAC +
Preference number: 6 (lower is better)
Translates to: SSGSPRDVRRLF*RFSVSSRCSRD
Trigger: GTCCCGGCTGCAGCGGCTGGAGACGCTGAACCTGCAGAACAACCGCCTGACATCCCGAGGGCTCCCAGAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 72 bp GCTCAGGGTGGGGGTGTCACTTCGGCCAAACACAGGTaGCCTCACAGGCAGCACAGGGCCCAGGAAGAGCTG +
Preference number: 6 (lower is better)
Translates to: AQGGGVTSAKHR*PHRQHRAQEEL
Trigger: CAGCTCTTCCTGGGCCCTGTGCTGCCTGTGAGGGCACCTGTGTTTGGCCGAAGTGACACCCCCACCCTGAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp CTGCGGGGAAGACCCGCTGGGACCCTCGACAGGTTGTaGCTGGACAAGTCCAGGTACTCCAGGCTGGACAGC +
Preference number: 6 (lower is better)
Translates to: LRGRPAGTLDRL*LDKSRYSRLDS
Trigger: GCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp AGCAGGACCAGGCTGCGGGGAAGACCCGCTGGGACCCTCGACAGGTaGTTGCTGGACAAGTCCAGGTACTCCAGGCTGGACAGCTTCCAG +
Preference number: 6 (lower is better)
Translates to: SRTRLRGRPAGTLDR*LLDKSRYSRLDSFQ
Trigger: CTGGAAGCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGGTCCTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp GTGCGCACTCGGCGGGGCAGGCCGCTGGGCACACGTTCCAGCGCGTaGTTGTATAGATGCACTGTGTGGAGCTTCTTGAGGCCCTGGAAG +
Preference number: 6 (lower is better)
Translates to: VRTRRGRPLGTRSSA*LYRCTVWSFLRPWK
Trigger: CTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGTGCCCAGCGGCCTGCCCCGCCGAGTGCGCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp AGGACCAGGCTGCGGGGAAGACCCGCTGGGACCCTCGACAGGTTGTaGCTGGACAAGTCCAGGTACTCCAGGCTGGACAGCTTCCAGAAG +
Preference number: 6 (lower is better)
Translates to: RTRLRGRPAGTLDRL*LDKSRYSRLDSFQK
Trigger: CTTCTGGAAGCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCAGCCTGGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp CGGGTGGCAGGTGCTTGGGCACGTGGCGCAGGAAGTTaGTGGACAGGATTAGGATCTCGACGTTGCTGGAGC +
Preference number: 6 (lower is better)
Translates to: RVAGAWARGAGS*WTGLGSRRCWS
Trigger: GCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp TGCGGGGAAGACCCGCTGGGACCCTCGACAGGTTGTTaGTGGACAAGTCCAGGTACTCCAGGCTGGACAGCT +
Preference number: 6 (lower is better)
Translates to: CGEDPLGPSTGC*WTSPGTPGWTA
Trigger: AGCTGTCCAGCCTGGAGTACCTGGACTTGTCCAGCAACAACCTGTCGAGGGTCCCAGCGGGTCTTCCCCGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp GCGAAGTCCTCACGGCCTATGCCTGTAATCTGGTTGTaGAGGATCATGAGGGTGCGCACTCGGCGGGGCAGG +
Preference number: 6 (lower is better)
Translates to: AKSSRPMPVIWL*RIMRVRTRRGR
Trigger: CCTGCCCCGCCGAGTGCGCACCCTCATGATCCTGCACAACCAGATTACAGGCATAGGCCGTGAGGACTTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp ATCTCGGGGACAGTCGACAGTGGCTGGGCCAGGCTCTaGCTCCTCGGAGCTCAGAACCAGCACTGGCTGATT +
Preference number: 6 (lower is better)
Translates to: ISGTVDSGWARL*LLGAQNQHWLI
Trigger: AATCAGCCAGTGCTGGTTCTGAGCTCCGAGGAGCCAGAGCCTGGCCCAGCCACTGTCGACTGTCCCCGAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp GCGGGTGGCAGGTGCTTGGGCACGTGGCGCAGGAAGTaGCTGGACAGGATTAGGATCTCGACGTTGCTGGAG +
Preference number: 6 (lower is better)
Translates to: AGGRCLGTWRRK*LDRIRISTLLE
Trigger: CTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp CGGGGCAGGCCGCTGGGCACACGTTCCAGCGCGTTGTaGTATAGATGCACTGTGTGGAGCTTCTTGAGGCCC +
Preference number: 6 (lower is better)
Translates to: RGRPLGTRSSAL*YRCTVWSFLRP
Trigger: GGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGTGCCCAGCGGCCTGCCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp CGGCGGGGCAGGCCGCTGGGCACACGTTCCAGCGCGTaGTTGTATAGATGCACTGTGTGGAGCTTCTTGAGG +
Preference number: 6 (lower is better)
Translates to: RRGRPLGTRSSA*LYRCTVWSFLR
Trigger: CCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGTGCCCAGCGGCCTGCCCCGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp CCACGTGCCAGGGCAGCCAGCTCATTCCGCTTGACCTaGAGCACGTGTACGTTTTTCGGCAGGCCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: PRARAASSFRLT*STCTFFGRPGG
Trigger: GCCTCCAGGCCTGCCGAAAAACGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGCTGCCCTGGCACGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CAA 90 bp AGGCCCTGGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTGGTaGCTATGTAGCAGCAGGTACTCCAGGTTGCGGATGGGTGTCAGC +
Preference number: 6 (lower is better)
Translates to: RPWKASGWIPLACSW*LCSSRYSRLRMGVS
Trigger: GCTGACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp GCTAGTGCCCCACGTGCCAGGGCAGCCAGCTCATTCCGCTTGACCTaGAGCACGTGTACGTTTTTCGGCAGGCCTGGAGGCAGTGTTTGC +
Preference number: 6 (lower is better)
Translates to: ASAPRARAASSFRLT*STCTFFGRPGGSVC
Trigger: GCAAACACTGCCTCCAGGCCTGCCGAAAAACGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGCTGCCCTGGCACGTGGGGCACTAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CAA 90 bp ATGCCAGCTAGTGCCCCACGTGCCAGGGCAGCCAGCTCATTCCGCTaGACCTTGAGCACGTGTACGTTTTTCGGCAGGCCTGGAGGCAGT +
Preference number: 6 (lower is better)
Translates to: MPASAPRARAASSFR*TLSTCTFFGRPGGS
Trigger: ACTGCCTCCAGGCCTGCCGAAAAACGTACACGTGCTCAAGGTCAAGCGGAATGAGCTGGCTGCCCTGGCACGTGGGGCACTAGCTGGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS GCA 72 bp GCTCGGGCAGGTCGCCTGGAAACTCACGCAGGTCAATaGCACCACAGTCCACTACACCTTCCTGGGAACAGG +
Preference number: 6 (lower is better)
Translates to: ARAGRLETHAGQ*HHSPLHLPGNR
Trigger: CCTGTTCCCAGGAAGGTGTAGTGGACTGTGGTGGCATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 72 bp AGGCCCTGGAAGGCCAGTGGGTGGATACCCTTGGCCTaGAGCTGGTTGCTATGTAGCAGCAGGTACTCCAGG +
Preference number: 6 (lower is better)
Translates to: RPWKASGWIPLA*SWLLCSSRYSR
Trigger: CCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp GTAGCGAAGTCCTCACGGCCTATGCCTGTAATCTGGTaGTGCAGGATCATGAGGGTGCGCACTCGGCGGGGC +
Preference number: 6 (lower is better)
Translates to: VAKSSRPMPVIW*CRIMRVRTRRG
Trigger: GCCCCGCCGAGTGCGCACCCTCATGATCCTGCACAACCAGATTACAGGCATAGGCCGTGAGGACTTCGCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp GGCACGTGGCGCAGGAAGTTGCTGGACAGGATTAGGATCTCGACGTaGCTGGAGCCATTGAACATGTGGTCCGGCAGCCCGGCATCTGCT +
Preference number: 6 (lower is better)
Translates to: GTWRRKLLDRIRIST*LEPLNMWSGSPASA
Trigger: AGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp AGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTGGTTaGTATGTAGCAGCAGGTACTCCAGGTTGCGGATGG +
Preference number: 6 (lower is better)
Translates to: RPVGGYPWPAAG*YVAAGTPGCGW
Trigger: CCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp CAAGGAGAGATGGTTGGTGTGCTCGGGCAGGTCGCCTaGAAACTCACGCAGGTCAATGCCACCACAGTCCAC +
Preference number: 6 (lower is better)
Translates to: QGEMVGVLGQVA*KLTQVNATTVH
Trigger: GTGGACTGTGGTGGCATTGACCTGCGTGAGTTTCCAGGCGACCTGCCCGAGCACACCAACCATCTCTCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 72 bp GTGGCAGGTGCTTGGGCACGTGGCGCAGGAAGTTGCTaGACAGGATTAGGATCTCGACGTTGCTGGAGCCAT +
Preference number: 6 (lower is better)
Translates to: VAGAWARGAGSC*TGLGSRRCWSH
Trigger: ATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp AGCTTGTACAGAGCGGGTGGCAGGTGCTTGGGCACGTaGCGCAGGAAGTTGCTGGACAGGATTAGGATCTCG +
Preference number: 6 (lower is better)
Translates to: SLYRAGGRCLGT*RRKLLDRIRIS
Trigger: CGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp TGGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTaGTTGCTATGTAGCAGCAGGTACTCCAGGTTGCGG +
Preference number: 6 (lower is better)
Translates to: WKASGWIPLACS*LLCSSRYSRLR
Trigger: CCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp CACTGTGTGGAGCTTCTTGAGGCCCTGGAAGGCCAGTaGGTGGATACCCTTGGCCTGCAGCTGGTTGCTATG +
Preference number: 6 (lower is better)
Translates to: HCVELLEALEGQ*VDTLGLQLVAM
Trigger: CATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp TTGAGGTGCAGCTTGTACAGAGCGGGTGGCAGGTGCTaGGGCACGTGGCGCAGGAAGTTGCTGGACAGGATT +
Preference number: 6 (lower is better)
Translates to: LRCSLYRAGGRC*GTWRRKLLDRI
Trigger: AATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAGCTGCACCTCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp TGCAGACGGTTGCCAGACAAGTCAAGTGAACGCAGCAGGCGTAGCTaGCGGAAGGCATCTCGGTGCATCTGTGGGCTGGTGATGCGGTTG +
Preference number: 6 (lower is better)
Translates to: CRRLPDKSSERSRRS*RKASRCICGLVMRL
Trigger: CAACCGCATCACCAGCCCACAGATGCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CAA 90 bp TTGTACAGAGCGGGTGGCAGGTGCTTGGGCACGTGGCGCAGGAAGTaGCTGGACAGGATTAGGATCTCGACGTTGCTGGAGCCATTGAAC +
Preference number: 6 (lower is better)
Translates to: LYRAGGRCLGTWRRK*LDRIRISTLLEPLN
Trigger: GTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp CCCTTGGCCTGCAGCTGGTTGCTATGTAGCAGCAGGTACTCCAGGTaGCGGATGGGTGTCAGCACATCAGCTTCTACGCTCTGGATGGCA +
Preference number: 6 (lower is better)
Translates to: PLACSWLLCSSRYSR*RMGVSTSASTLWMA
Trigger: TGCCATCCAGAGCGTAGAAGCTGATGTGCTGACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp ACACGTTCCAGCGCGTTGTTGTATAGATGCACTGTGTGGAGCTTCTaGAGGCCCTGGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: TRSSALLYRCTVWSF*RPWKASGWIPLACS
Trigger: GCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp AGGTTGGGAGTGGAGTCAAAGGCGTTGGCAGGAACGGCACTAATCTaGTTATTCTGCAGACCAGCAAGGTCCACCCAGGCACGGGGTCCC +
Preference number: 6 (lower is better)
Translates to: RLGVESKALAGTALI*LFCRPARSTQARGP
Trigger: GGGACCCCGTGCCTGGGTGGACCTTGCTGGTCTGCAGAATAACAAGATTAGTGCCGTTCCTGCCAACGCCTTTGACTCCACTCCCAACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130026.2
CDS CCA 72 bp CTTCCTCCACAAATTCATTCTCCTCGGGGCTCAGGGTaGGGGTGTCACTTCGGCCAAACACAGGTGCCCTCA +
Preference number: 6 (lower is better)
Translates to: LPPQIHSPRGSG*GCHFGQTQVPS
Trigger: TGAGGGCACCTGTGTTTGGCCGAAGTGACACCCCCACCCTGAGCCCCGAGGAGAATGAATTTGTGGAGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 72 bp CGCAGGTCAATGCCACCACAGTCCACTACACCTTCCTaGGAACAGGCACAATCTCGGGGACAGTCGACAGTG +
Preference number: 6 (lower is better)
Translates to: RRSMPPQSTTPS*EQAQSRGQSTV
Trigger: CACTGTCGACTGTCCCCGAGATTGTGCCTGTTCCCAGGAAGGTGTAGTGGACTGTGGTGGCATTGACCTGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp CTGGACAGGATTAGGATCTCGACGTTGCTGGAGCCATaGAACATGTGGTCCGGCAGCCCGGCATCTGCTAGC +
Preference number: 6 (lower is better)
Translates to: LDRIRISTLLEP*NMWSGSPASAS
Trigger: GCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp CGCAGGAAGTTGCTGGACAGGATTAGGATCTCGACGTaGCTGGAGCCATTGAACATGTGGTCCGGCAGCCCG +
Preference number: 6 (lower is better)
Translates to: RRKLLDRIRIST*LEPLNMWSGSP
Trigger: CGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCTGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp AAGGCCAGTGGGTGGATACCCTTGGCCTGCAGCTGGTaGCTATGTAGCAGCAGGTACTCCAGGTTGCGGATG +
Preference number: 6 (lower is better)
Translates to: KASGWIPLACSW*LCSSRYSRLRM
Trigger: CATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCAGGCCAAGGGTATCCACCCACTGGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp TTGCCAGACAAGTCAAGTGAACGCAGCAGGCGTAGCTaGCGGAAGGCATCTCGGTGCATCTGTGGGCTGGTG +
Preference number: 6 (lower is better)
Translates to: LPDKSSERSRRS*RKASRCICGLV
Trigger: CACCAGCCCACAGATGCACCGAGATGCCTTCCGCAAGCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CAA 90 bp ACGTGTACGTTTTTCGGCAGGCCTGGAGGCAGTGTTTGCAGACGGTaGCCAGACAAGTCAAGTGAACGCAGCAGGCGTAGCTTGCGGAAG +
Preference number: 6 (lower is better)
Translates to: TCTFFGRPGGSVCRR*PDKSSERSRRSLRK
Trigger: CTTCCGCAAGCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGCCTGCCGAAAAACGTACACGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CAA 90 bp CCCACCCCCACCACGCACTGCTGCCTCTTTCTCTTCCAAGCCTTCTaGAGGCTGTTCTCTGAAAGTGCCTGTGAGGTAGAGTTCCCGAAG +
Preference number: 6 (lower is better)
Translates to: PTPTTHCCLFLFQAF*RLFSESACEVEFPK
Trigger: CTTCGGGAACTCTACCTCACAGGCACTTTCAGAGAACAGCCTCAAGAAGGCTTGGAAGAGAAAGAGGCAGCAGTGCGTGGTGGGGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146851.8
CDS TCA 72 bp GGCTCTGGCTCCTCGGAGCTCAGAACCAGCACTGGCTaGTTCTCTTCCTCCACAAATTCATTCTCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: GSGSSELRTSTG*FSSSTNSFSSG
Trigger: CCCCGAGGAGAATGAATTTGTGGAGGAAGAGAATCAGCCAGTGCTGGTTCTGAGCTCCGAGGAGCCAGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS TCA 72 bp TGGACAGGATTAGGATCTCGACGTTGCTGGAGCCATTaGACATGTGGTCCGGCAGCCCGGCATCTGCTAGCT +
Preference number: 6 (lower is better)
Translates to: WTGLGSRRCWSH*TCGPAARHLLA
Trigger: AGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp TTTTCGGCAGGCCTGGAGGCAGTGTTTGCAGACGGTTaGCAGACAAGTCAAGTGAACGCAGCAGGCGTAGCT +
Preference number: 6 (lower is better)
Translates to: FSAGLEAVFADG*QTSQVNAAGVA
Trigger: AGCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGCCTGCCGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CCA 72 bp TCTTCTCCAGCTGGTTGTTCTGCAAGGAGAGATGGTTaGTGTGCTCGGGCAGGTCGCCTGGAAACTCACGCA +
Preference number: 6 (lower is better)
Translates to: SSPAGCSARRDG*CARAGRLETHA
Trigger: TGCGTGAGTTTCCAGGCGACCTGCCCGAGCACACCAACCATCTCTCCTTGCAGAACAACCAGCTGGAGAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CCA 72 bp CTTATTGTTCTTGAGGTGCAGCTTGTACAGAGCGGGTaGCAGGTGCTTGGGCACGTGGCGCAGGAAGTTGCT +
Preference number: 6 (lower is better)
Translates to: LIVLEVQLVQSG*QVLGHVAQEVA
Trigger: AGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAGCTGCACCTCAAGAACAATAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp GGATGGGTGTCAGCACATCAGCTTCTACGCTCTGGATaGCATTTTTCTCCAGGTGCAGCAGGACCAGGCTGC +
Preference number: 6 (lower is better)
Translates to: GWVSAHQLLRSG*HFSPGAAGPGC
Trigger: GCAGCCTGGTCCTGCTGCACCTGGAGAAAAATGCCATCCAGAGCGTAGAAGCTGATGTGCTGACACCCATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp TTGTATAGATGCACTGTGTGGAGCTTCTTGAGGCCCTaGAAGGCCAGTGGGTGGATACCCTTGGCCTGCAGC +
Preference number: 6 (lower is better)
Translates to: LYRCTVWSFLRP*KASGWIPLACS
Trigger: GCTGCAGGCCAAGGGTATCCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp ACACGTTCCAGCGCGTTGTTGTATAGATGCACTGTGTaGAGCTTCTTGAGGCCCTGGAAGGCCAGTGGGTGG +
Preference number: 6 (lower is better)
Translates to: TRSSALLYRCTV*SFLRPWKASGW
Trigger: CCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCTGGAACGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp ATCTTCTCCAGCTGGTTGTTCTGCAAGGAGAGATGGTaGGTGTGCTCGGGCAGGTCGCCTGGAAACTCACGC +
Preference number: 6 (lower is better)
Translates to: IFSSWLFCKERW*VCSGRSPGNSR
Trigger: GCGTGAGTTTCCAGGCGACCTGCCCGAGCACACCAACCATCTCTCCTTGCAGAACAACCAGCTGGAGAAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp TTTTTCGGCAGGCCTGGAGGCAGTGTTTGCAGACGGTaGCCAGACAAGTCAAGTGAACGCAGCAGGCGTAGC +
Preference number: 6 (lower is better)
Translates to: FFGRPGGSVCRR*PDKSSERSRRS
Trigger: GCTACGCCTGCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGCCTGCCGAAAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CAA 90 bp TTATTGTTCTTGAGGTGCAGCTTGTACAGAGCGGGTGGCAGGTGCTaGGGCACGTGGCGCAGGAAGTTGCTGGACAGGATTAGGATCTCG +
Preference number: 6 (lower is better)
Translates to: LLFLRCSLYRAGGRC*GTWRRKLLDRIRIS
Trigger: CGAGATCCTAATCCTGTCCAGCAACTTCCTGCGCCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAGCTGCACCTCAAGAACAATAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp ACGTGTACGTTTTTCGGCAGGCCTGGAGGCAGTGTTTaGAGACGGTTGCCAGACAAGTCAAGTGAACGCAGC +
Preference number: 6 (lower is better)
Translates to: TCTFFGRPGGSV*RRLPDKSSERS
Trigger: GCTGCGTTCACTTGACTTGTCTGGCAACCGTCTGCAAACACTGCCTCCAGGCCTGCCGAAAAACGTACACGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
ENSMUST00000146851.8
CDS CCA 72 bp GGTTGCTATGTAGCAGCAGGTACTCCAGGTTGCGGATaGGTGTCAGCACATCAGCTTCTACGCTCTGGATGG +
Preference number: 6 (lower is better)
Translates to: GCYVAAGTPGCG*VSAHQLLRSGW
Trigger: CCATCCAGAGCGTAGAAGCTGATGTGCTGACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp GGGATCTTCTCTAGCTTATTGTTCTTGAGGTGCAGCTaGTACAGAGCGGGTGGCAGGTGCTTGGGCACGTGG +
Preference number: 6 (lower is better)
Translates to: GIFSSLLFLRCS*YRAGGRCLGTW
Trigger: CCACGTGCCCAAGCACCTGCCACCCGCTCTGTACAAGCTGCACCTCAAGAACAATAAGCTAGAGAAGATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp TGCAGCTGGTTGCTATGTAGCAGCAGGTACTCCAGGTaGCGGATGGGTGTCAGCACATCAGCTTCTACGCTC +
Preference number: 6 (lower is better)
Translates to: CSWLLCSSRYSR*RMGVSTSASTL
Trigger: GAGCGTAGAAGCTGATGTGCTGACACCCATCCGCAACCTGGAGTACCTGCTGCTACATAGCAACCAGCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp AGCGCGTTGTTGTATAGATGCACTGTGTGGAGCTTCTaGAGGCCCTGGAAGGCCAGTGGGTGGATACCCTTG +
Preference number: 6 (lower is better)
Translates to: SALLYRCTVWSF*RPWKASGWIPL
Trigger: CAAGGGTATCCACCCACTGGCCTTCCAGGGCCTCAAGAAGCTCCACACAGTGCATCTATACAACAACGCGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp CAGGTACAGGTAATTGAGGCTAGTAAGATGCTCAAATaGCTCCTCTGGGAGCCCTCGGGATGTCAGGCGGTT +
Preference number: 6 (lower is better)
Translates to: QVQVIEASKMLK*LLWEPSGCQAV
Trigger: AACCGCCTGACATCCCGAGGGCTCCCAGAGGAGGCATTTGAGCATCTTACTAGCCTCAATTACCTGTACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS GCA 72 bp TGGTCCGGCAGCCCGGCATCTGCTAGCTTGTTGTTATaGAGGTACACAGACCTCAGATTTGGCTTTTGGCCA +
Preference number: 6 (lower is better)
Translates to: WSGSPASASLLL*RYTDLRFGFWP
Trigger: TGGCCAAAAGCCAAATCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp GTGGAGTCAAAGGCGTTGGCAGGAACGGCACTAATCTaGTTATTCTGCAGACCAGCAAGGTCCACCCAGGCA +
Preference number: 6 (lower is better)
Translates to: VESKALAGTALI*LFCRPARSTQA
Trigger: TGCCTGGGTGGACCTTGCTGGTCTGCAGAATAACAAGATTAGTGCCGTTCCTGCCAACGCCTTTGACTCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130026.2
CDS CAA 90 bp CTGGAGCCATTGAACATGTGGTCCGGCAGCCCGGCATCTGCTAGCTaGTTGTTATGCAGGTACACAGACCTCAGATTTGGCTTTTGGCCA +
Preference number: 6 (lower is better)
Translates to: LEPLNMWSGSPASAS*LLCRYTDLRFGFWP
Trigger: TGGCCAAAAGCCAAATCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp AGGAAGTTGCTGGACAGGATTAGGATCTCGACGTTGCTGGAGCCATaGAACATGTGGTCCGGCAGCCCGGCATCTGCTAGCTTGTTGTTA +
Preference number: 6 (lower is better)
Translates to: RKLLDRIRISTLLEP*NMWSGSPASASLLL
Trigger: TAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAATCCTGTCCAGCAACTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp ATTAGGATCTCGACGTTGCTGGAGCCATTGAACATGTaGTCCGGCAGCCCGGCATCTGCTAGCTTGTTGTTA +
Preference number: 6 (lower is better)
Translates to: IRISTLLEPLNM*SGSPASASLLL
Trigger: TAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTCCAGCAACGTCGAGATCCTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp TTGAACATGTGGTCCGGCAGCCCGGCATCTGCTAGCTaGTTGTTATGCAGGTACACAGACCTCAGATTTGGC +
Preference number: 6 (lower is better)
Translates to: LNMWSGSPASAS*LLCRYTDLRFG
Trigger: GCCAAATCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 90 bp GAGCCATTGAACATGTGGTCCGGCAGCCCGGCATCTGCTAGCTTGTaGTTATGCAGGTACACAGACCTCAGATTTGGCTTTTGGCCAAAG +
Preference number: 6 (lower is better)
Translates to: EPLNMWSGSPASASL*LCRYTDLRFGFWPK
Trigger: CTTTGGCCAAAAGCCAAATCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTTCAATGGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS GCA 72 bp TTACCAAACTCAAAGTTGCCTTCAATGTCCAAGACCTaGAGGTGTTTCAGCCTCCGGAAGGCGCTTTCCACC +
Preference number: 6 (lower is better)
Translates to: LPNSKLPSMSKT*RCFSLRKALST
Trigger: GGTGGAAAGCGCCTTCCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS CCA 72 bp ATAATTGGCAGCAAAGTCCACACTGATCAGGGCGTTTaGCAGGAATCGGGGTGCCAGTGTCAGCTTGTTGTT +
Preference number: 6 (lower is better)
Translates to: IIGSKVHTDQGV*QESGCQCQLVV
Trigger: AACAACAAGCTGACACTGGCACCCCGATTCCTGCCAAACGCCCTGATCAGTGTGGACTTTGCTGCCAATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CCA 72 bp AATCTTGTTATTCTGCAGGTACAGATACTCCAGAGATaGGGGGAGCCCCTCAGGGACCTCTGTGAGCTGATT +
Preference number: 6 (lower is better)
Translates to: NLVILQVQILQR*GEPLRDLCELI
Trigger: AATCAGCTCACAGAGGTCCCTGAGGGGCTCCCCCCATCTCTGGAGTATCTGTACCTGCAGAATAACAAGATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp AACATGTGGTCCGGCAGCCCGGCATCTGCTAGCTTGTaGTTATGCAGGTACACAGACCTCAGATTTGGCTTT +
Preference number: 6 (lower is better)
Translates to: NMWSGSPASASL*LCRYTDLRFGF
Trigger: AAAGCCAAATCTGAGGTCTGTGTACCTGCATAACAACAAGCTAGCAGATGCCGGGCTGCCGGACCACATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8
CDS CAA 72 bp GTGGAGTCAAAGGCGTTGGCAGGAACGGCACTAATCTaGTTATTCTGCAGGTACAGATACTCCAGAGATGGG +
Preference number: 6 (lower is better)
Translates to: VESKALAGTALI*LFCRYRYSRDG
Trigger: CCCATCTCTGGAGTATCTGTACCTGCAGAATAACAAGATTAGTGCCGTTCCTGCCAACGCCTTTGACTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp AAGATCCCCTTAAGGTTGGGAGTGGAGTCAAAGGCGTaGGCAGGAACGGCACTAATCTTGTTATTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: KIPLRLGVESKA*AGTALILLFCR
Trigger: CCTGCAGAATAACAAGATTAGTGCCGTTCCTGCCAACGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 72 bp AAGATCCCCTTAAGGTTGGGAGTGGAGTCAAAGGCGTaGGCAGGAACGGCACTAATCTTGTTATTCTGCAGA +
Preference number: 6 (lower is better)
Translates to: KIPLRLGVESKA*AGTALILLFCR
Trigger: TCTGCAGAATAACAAGATTAGTGCCGTTCCTGCCAACGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130026.2
CDS CAA 90 bp AACCTGAGAAAGATCCCCTTAAGGTTGGGAGTGGAGTCAAAGGCGTaGGCAGGAACGGCACTAATCTTGTTATTCTGCAGGTACAGATAC +
Preference number: 6 (lower is better)
Translates to: NLRKIPLRLGVESKA*AGTALILLFCRYRY
Trigger: GTATCTGTACCTGCAGAATAACAAGATTAGTGCCGTTCCTGCCAACGCCTTTGACTCCACTCCCAACCTTAAGGGGATCTTTCTCAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
CDS CAA 90 bp TCCTCTTCCTCATCTTTGTCCTTGGAACCATTACCAAACTCAAAGTaGCCTTCAATGTCCAAGACCTGCAGGTGTTTCAGCCTCCGGAAG +
Preference number: 6 (lower is better)
Translates to: SSSSSLSLEPLPNSK*PSMSKTCRCFSLRK
Trigger: CTTCCGGAGGCTGAAACACCTGCAGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGAAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS CAA 90 bp TCTTCCTCATCTTCCTCTTCCTCCTCTTCTTCCTCTTCCTCATCTTaGTCCTTGGAACCATTACCAAACTCAAAGTTGCCTTCAATGTCC +
Preference number: 6 (lower is better)
Translates to: SSSSSSSSSSSSSSS*SLEPLPNSKLPSMS
Trigger: GGACATTGAAGGCAACTTTGAGTTTGGTAATGGTTCCAAGGACAAAGATGAGGAAGAGGAAGAAGAGGAGGAAGAGGAAGATGAGGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS CAA 72 bp TCATCTTTGTCCTTGGAACCATTACCAAACTCAAAGTaGCCTTCAATGTCCAAGACCTGCAGGTGTTTCAGC +
Preference number: 6 (lower is better)
Translates to: SSLSLEPLPNSK*PSMSKTCRCFS
Trigger: GCTGAAACACCTGCAGGTCTTGGACATTGAAGGCAACTTTGAGTTTGGTAATGGTTCCAAGGACAAAGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000130026.2
CDS CAA 72 bp GTTGTTATGCAGGTACACAGACCTCAGATTTGGCTTTaGGCCAAAGGTGAGTCCATAGATCTTAGTGAGATA +
Preference number: 6 (lower is better)
Translates to: VVMQVHRPQIWL*AKGESIDLSEI
Trigger: TATCTCACTAAGATCTATGGACTCACCTTTGGCCAAAAGCCAAATCTGAGGTCTGTGTACCTGCATAACAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044248.14
ENSMUST00000106708.8
ENSMUST00000106709.9
ENSMUST00000146851.8