RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POC5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021671

Ensembl transcript IDs: ENSMUST00000099295.6

Found 157 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTaGCCACATGGAAGGTGTAAGAGGAGGTGTTGCTGCTGGCTGGTC +
Preference number: 1 (lower is better)
Translates to: VPSGFPGWAEHFWRA*PHGRCKRRCCCWLV
Trigger: GACCAGCCAGCAGCAACACCTCCTCTTACACCTTCCATGTGGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp GTTACAGATGGTTTAAAGCTGCCAAGTGGGCGCTGGGACCTGAACTaGGGTCCTCTGCAGGAGCAGCATGTGCTTAGTGGTCCTGAGCTC +
Preference number: 1 (lower is better)
Translates to: VTDGLKLPSGRWDLN*GPLQEQHVLSGPEL
Trigger: GAGCTCAGGACCACTAAGCACATGCTGCTCCTGCAGAGGACCCCAGTTCAGGTCCCAGCGCCCACTTGGCAGCTTTAAACCATCTGTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp CTCTGCAGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTaGGGCTTTGATTCTGGATCACAGGAGTGGTTTCTTAGGGGAGCC +
Preference number: 1 (lower is better)
Translates to: LCRSSMCLVVLSSTQ*GFDSGSQEWFLRGA
Trigger: GGCTCCCCTAAGAAACCACTCCTGTGATCCAGAATCAAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCTGCAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 90 bp TGTACACACGCATGCCTGGTGCCTGCAGGGGCCAGGAGAGGGTGTTaGGGTTTCTGGAACTGGAGTTACAGATGGTTTAAAGCTGCCAAG +
Preference number: 1 (lower is better)
Translates to: CTHACLVPAGARRGC*GFWNWSYRWFKAAK
Trigger: CTTGGCAGCTTTAAACCATCTGTAACTCCAGTTCCAGAAACCTCAACACCCTCTCCTGGCCCCTGCAGGCACCAGGCATGCGTGTGTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp TCTGGAACTGGAGTTACAGATGGTTTAAAGCTGCCAAGTGGGCGCTaGGACCTGAACTGGGGTCCTCTGCAGGAGCAGCATGTGCTTAGT +
Preference number: 1 (lower is better)
Translates to: SGTGVTDGLKLPSGR*DLNWGPLQEQHVLS
Trigger: ACTAAGCACATGCTGCTCCTGCAGAGGACCCCAGTTCAGGTCCCAGCGCCCACTTGGCAGCTTTAAACCATCTGTAACTCCAGTTCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp ACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAGCATCAGGCCTaGCCTAGCAAGTCTATTCACACTGGCTGGCCATTAAGCTTACCC +
Preference number: 1 (lower is better)
Translates to: TEIPRGGIKTMQHQA*PSKSIHTGWPLSLP
Trigger: GGGTAAGCTTAATGGCCAGCCAGTGTGAATAGACTTGCTAGGCCAGGCCTGATGCTGCATGGTTTTTATCCCACCACGGGGGATCTCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp CTTGCTTTCTTCTTTCTGAGACAGACCTCACTCTGTAGATCAGGCTaGCCTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAGCA +
Preference number: 1 (lower is better)
Translates to: LAFFFLRQTSLCRSG*PHRDPPWWDKNHAA
Trigger: TGCTGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACAGAGTGAGGTCTGTCTCAGAAAGAAGAAAGCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp TTTTTAACTGCTGAGCCATCTCACCAATCCATATACTGTTCCTTCTaGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTGCCCACA +
Preference number: 1 (lower is better)
Translates to: FLTAEPSHQSIYCSF*LSWVGRALLESVPT
Trigger: TGTGGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACAGTATATGGATTGGTGAGATGGCTCAGCAGTTAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 90 bp AGGTGTAAGAGGAGGTGTTGCTGCTGGCTGGTCACTAAAATCACATaGGCTTTTGCTAGAGTAGTAGCTGGGCCACTGCCTGATACACCT +
Preference number: 1 (lower is better)
Translates to: RCKRRCCCWLVTKIT*AFARVVAGPLPDTP
Trigger: AGGTGTATCAGGCAGTGGCCCAGCTACTACTCTAGCAAAAGCTCATGTGATTTTAGTGACCAGCCAGCAGCAACACCTCCTCTTACACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 90 bp TTTTCTCCTACGTCAGCTCTGCATAGATGCTTGCTTTCTTCTTTCTaGGACAGACCTCACTCTGTAGATCAGGCTGGCCTCACAGAGATC +
Preference number: 1 (lower is better)
Translates to: FSPTSALHRCLLSSF*DRPHSVDQAGLTEI
Trigger: GATCTCTGTGAGGCCAGCCTGATCTACAGAGTGAGGTCTGTCTCAGAAAGAAGAAAGCAAGCATCTATGCAGAGCTGACGTAGGAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 90 bp GCCAGCAAGAAAGCCACGAAGAAGCTTTTTCTCCTACGTCAGCTCTaGATAGATGCTTGCTTTCTTCTTTCTGAGACAGACCTCACTCTG +
Preference number: 1 (lower is better)
Translates to: ASKKATKKLFLLRQL*IDACFLLSETDLTL
Trigger: CAGAGTGAGGTCTGTCTCAGAAAGAAGAAAGCAAGCATCTATGCAGAGCTGACGTAGGAGAAAAAGCTTCTTCGTGGCTTTCTTGCTGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 90 bp GTCCATGATGCTCTGACAGTACAGAAAAGTCAAAACCAAGAAGCTTaGTGCTCCCAGGAAAGTCCTTATCAGAGGACTCATAGCCATGAG +
Preference number: 1 (lower is better)
Translates to: VHDALTVQKSQNQEA*CSQESPYQRTHSHE
Trigger: CTCATGGCTATGAGTCCTCTGATAAGGACTTTCCTGGGAGCAGCAAGCTTCTTGGTTTTGACTTTTCTGTACTGTCAGAGCATCATGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 90 bp CATGATGCTCTGACAGTACAGAAAAGTCAAAACCAAGAAGCTTGCTaGTCCCAGGAAAGTCCTTATCAGAGGACTCATAGCCATGAGTGT +
Preference number: 1 (lower is better)
Translates to: HDALTVQKSQNQEAC*SQESPYQRTHSHEC
Trigger: ACACTCATGGCTATGAGTCCTCTGATAAGGACTTTCCTGGGAGCAGCAAGCTTCTTGGTTTTGACTTTTCTGTACTGTCAGAGCATCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 90 bp CTTGGATGTGCGCATGTCAATATGACTGAAGTGCTCATAATTAGCTaGTTCCTTCCTGATAGACAGGATGTTTTCTCCAGAGACTGCAGT +
Preference number: 1 (lower is better)
Translates to: LGCAHVNMTEVLIIS*FLPDRQDVFSRDCS
Trigger: ACTGCAGTCTCTGGAGAAAACATCCTGTCTATCAGGAAGGAAGCAGCTAATTATGAGCACTTCAGTCATATTGACATGCGCACATCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 90 bp GTTACAAAATGTACCAGTTGTTCGTTGTATCATTGTAAGCCTGCCTaGAGTCCAGTTCTGACTCCTGGTCTGGAAAAGCTGGTAAGAAAA +
Preference number: 1 (lower is better)
Translates to: VTKCTSCSLYHCKPA*SPVLTPGLEKLVRK
Trigger: TTTTCTTACCAGCTTTTCCAGACCAGGAGTCAGAACTGGACTCCAGGCAGGCTTACAATGATACAACGAACAACTGGTACATTTTGTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 90 bp CCTGCAATAGTCCCAGTTACATCAGCTTACATTAGGATGTCTTTATaGCTTGGCTTGCATACTAAATCTAGGTCTGAGCTTAAACCAAGG +
Preference number: 1 (lower is better)
Translates to: PAIVPVTSAYIRMSL*LGLHTKSRSELKPR
Trigger: CCTTGGTTTAAGCTCAGACCTAGATTTAGTATGCAAGCCAAGTCATAAAGACATCCTAATGTAAGCTGATGTAACTGGGACTATTGCAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR GCA 90 bp CGGTTCATACAGGGAGGGGTGGAGGAGGAGGATGGGTTGATGCATTCGTCACCGCACACGCATGCCTGGTaGCTGCAGGGGCCAGGAGAG +
Preference number: 2 (lower is better)
Translates to: RFIQGGVEEEDGLMHSSPHTHAW*LQGPGE
Trigger: CTCTCCTGGCCCCTGCAGGCACCAGGCATGCGTGTG...CGGTGACGAATGCATCAACCCATCCTCCTCCTCCACCCCTCCCTGTATGAACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR GCA 90 bp GTCTCTCCTCAGTCTGTTGCTCAGCCCGGCCAGTTTCCACTGACCATGGGCAGCTGCAGGAGCAGCATGTaGTTAGTGGTCCTGAGCTCC +
Preference number: 2 (lower is better)
Translates to: VSPQSVAQPGQFPLTMGSCRSSM*LVVLSS
Trigger: GGAGCTCAGGACCACTAAGCACATGCTGCTCCTGCA...GCTGCCCATGGTCAGTGGAAACTGGCCGGGCTGAGCAACAGACTGAGGAGAGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp CGGTTCATACAGGGAGGGGTGGAGGAGGAGGATGGGTTGATGCATTCGTCACCGGCCAGGAGAGGGTGTTaGGGTTTCTGGAACTGGAGT +
Preference number: 2 (lower is better)
Translates to: RFIQGGVEEEDGLMHSSPARRGC*GFWNWS
Trigger: ACTCCAGTTCCAGAAACCTCAACACCCTCTCCTGGC...CGGTGACGAATGCATCAACCCATCCTCCTCCTCCACCCCTCCCTGTATGAACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp CTCTGCAGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTGGGGCTTTTCTGGCTTTCCTGGGTaGGCAGAGCACTTCTGGAGA +
Preference number: 2 (lower is better)
Translates to: LCRSSMCLVVLSSTQWGFSGFPG*AEHFWR
Trigger: TCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGA...AAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCTGCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp AAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGTGCGCATGTCCAGAGCCTGAGGGATaGAGGCCCATACAGCGAAGG +
Preference number: 2 (lower is better)
Translates to: KQGLGDAALIMDSWMCACPEPEG*RPIQRR
Trigger: CCTTCGCTGTATGGGCCTTCATCCCTCAGGCTCTGG...ACATGCGCACATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp GTCTCTCCTCAGTCTGTTGCTCAGCCCGGCCAGTTTCCACTGACCATGGGCAGCCGTTCTGTTCTGAGATaGGATGGATTAACGCATCGC +
Preference number: 2 (lower is better)
Translates to: VSPQSVAQPGQFPLTMGSRSVLR*DGLTHR
Trigger: GCGATGCGTTAATCCATCCCATCTCAGAACAGAACG...GCTGCCCATGGTCAGTGGAAACTGGCCGGGCTGAGCAACAGACTGAGGAGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp CGGTTCATACAGGGAGGGGTGGAGGAGGAGGATGGGTTGATGCATTCGTCACCGCAGCACATGTGTGGATaGGCAAAAAGAACTAGGCAG +
Preference number: 2 (lower is better)
Translates to: RFIQGGVEEEDGLMHSSPQHMCG*AKRTRQ
Trigger: CTGCCTAGTTCTTTTTGCTCATCCACACATGTGCTG...CGGTGACGAATGCATCAACCCATCCTCCTCCTCCACCCCTCCCTGTATGAACCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp CTCATGTCTGGAAGTAGAGACCCAGATGGACGGTGTCACACAGGGAAGAGACAACTCTGTAGATCAGGCTaGCCTCACAGAGATCCCCCG +
Preference number: 2 (lower is better)
Translates to: LMSGSRDPDGRCHTGKRQLCRSG*PHRDPP
Trigger: CGGGGGATCTCTGTGAGGCCAGCCTGATCTACAGAG...TTGTCTCTTCCCTGTGTGACACCGTCCATCTGGGTCTCTACTTCCAGACATGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp TCCAGAGACTGCAGTGTGGATGAGGGAAACACCCGTGAGTGCTTGACCTCCAGCCATTGTAAGCCTGCCTaGAGTCCAGTTCTGACTCCT +
Preference number: 2 (lower is better)
Translates to: SRDCSVDEGNTRECLTSSHCKPA*SPVLTP
Trigger: AGGAGTCAGAACTGGACTCCAGGCAGGCTTACAATG...GCTGGAGGTCAAGCACTCACGGGTGTTTCCCTCATCCACACTGCAGTCTCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR GCA 90 bp CGGTTCATACAGGGAGGGGTGGAGGAGGAGGATGGGTTGATGCATTCGTCACCGAACCAAGAAGCTTGCTaGTCCCAGGAAAGTCCTTAT +
Preference number: 2 (lower is better)
Translates to: RFIQGGVEEEDGLMHSSPNQEAC*SQESPY
Trigger: ATAAGGACTTTCCTGGGAGCAGCAAGCTTCTTGGTT...CGGTGACGAATGCATCAACCCATCCTCCTCCTCCACCCCTCCCTGTATGAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp TGGTGCCTGCAGGGGCCAGGAGAGGGTGTTGAGGTTTCTGGAACTGGAGTTACACTGAGAAGATGCACATaGTATGTCCATGATGCTCTG +
Preference number: 2 (lower is better)
Translates to: WCLQGPGEGVEVSGTGVTLRRCT*YVHDAL
Trigger: CAGAGCATCATGGACATATCATGTGCATCTTCTCAG...TGTAACTCCAGTTCCAGAAACCTCAACACCCTCTCCTGGCCCCTGCAGGCACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp TACTGTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTGCCCCATTTAGTCTCTCCTTaGAGTATGAGGCAGCAAGAA +
Preference number: 2 (lower is better)
Translates to: YCSFWLSWVGRALLESVPHLVSP*SMRQQE
Trigger: TTCTTGCTGCCTCATACTTCAAGGAGAGACTAAATG...GGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR GCA 90 bp AAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGTGCGCATGTAAAGCGCCACTCCTCTaGAGCACATGTGTGGATGAG +
Preference number: 2 (lower is better)
Translates to: KQGLGDAALIMDSWMCACKAPLL*STCVDE
Trigger: CTCATCCACACATGTGCTGCAGAGGAGTGGCGCTTT...ACATGCGCACATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp CTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAGCATCAGGCCTGGCCTTCTATTCACACTGGCTaGCCATTAAGCTTACCCATG +
Preference number: 2 (lower is better)
Translates to: LTEIPRGGIKTMQHQAWPSIHTG*PLSLPM
Trigger: CATGGGTAAGCTTAATGGCCAGCCAGTGTGAATAGA...AGGCCAGGCCTGATGCTGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp GCCTGGCCTAGCAAGTCTATTCACACTGGCTGGCCATTAAGCTTACCCATGTCTGACAGGCAAGAGAAATaGAAGCAGGCTTATTCCAGC +
Preference number: 2 (lower is better)
Translates to: AWPSKSIHTGWPLSLPMSDRQEK*KQAYSS
Trigger: GCTGGAATAAGCCTGCTTTCATTTCTCTTGCCTGTC...AGACATGGGTAAGCTTAATGGCCAGCCAGTGTGAATAGACTTGCTAGGCCAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp GCTCCTGGGAAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGAAGGCAGGAAAGCTCTaGTTAGAAATGTCACTGCTA +
Preference number: 2 (lower is better)
Translates to: APGKQGLGDAALIMDSWMKAGKL*LEMSLL
Trigger: TAGCAGTGACATTTCTAACCAGAGCTTTCCTGCCTT...CATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTTCCCAGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp TGCCTGGAGTCCAGTTCTGACTCCTGGTCTGGAAAAGCTGGTAAGAAAATCAAGAGGAGGTGTTGCTGCTaGCTGGTCACTAAAATCACA +
Preference number: 2 (lower is better)
Translates to: CLESSSDSWSGKAGKKIKRRCCC*LVTKIT
Trigger: TGTGATTTTAGTGACCAGCCAGCAGCAACACCTCCT...CTTGATTTTCTTACCAGCTTTTCCAGACCAGGAGTCAGAACTGGACTCCAGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp CTCATGTCTGGAAGTAGAGACCCAGATGGACGGTGTCACACAGGGAAGAGACAAATGTCCATGATGCTCTaGCAGTACAGAAAAGTCAAA +
Preference number: 2 (lower is better)
Translates to: LMSGSRDPDGRCHTGKRQMSMML*QYRKVK
Trigger: TTTGACTTTTCTGTACTGTCAGAGCATCATGGACAT...TTGTCTCTTCCCTGTGTGACACCGTCCATCTGGGTCTCTACTTCCAGACATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR GCA 90 bp CTCATGTCTGGAAGTAGAGACCCAGATGGACGGTGTCACACAGGGAAGAGACAACTCTGCATAGATGCTTaGTTTCTTCTTTCTGAGACA +
Preference number: 2 (lower is better)
Translates to: LMSGSRDPDGRCHTGKRQLCIDA*FLLSET
Trigger: TGTCTCAGAAAGAAGAAAGCAAGCATCTATGCAGAG...TTGTCTCTTCCCTGTGTGACACCGTCCATCTGGGTCTCTACTTCCAGACATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR TCA 90 bp TATGACTTGGCTTGCATACTAAATCTAGGTCTGAGCTTAAACCAAGGTTTCTGTGTCACTAAAATCACATaGGCTTTTGCTAGAGTAGTA +
Preference number: 2 (lower is better)
Translates to: YDLACILNLGLSLNQGFCVTKIT*AFARVV
Trigger: TACTACTCTAGCAAAAGCTCATGTGATTTTAGTGAC...ACAGAAACCTTGGTTTAAGCTCAGACCTAGATTTAGTATGCAAGCCAAGTCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CCA 90 bp GTTTTAGTAATGAAAGTAAAGTCCCTTCCAAAGCTCTATGTAAATTACTGCCCATATATTCTTCCACAATaGCAATCACTGGCAGGCTGT +
Preference number: 2 (lower is better)
Translates to: VLVMKVKSLPKLYVNYCPYILPQ*QSLAGC
Trigger: ACAGCCTGCCAGTGATTGCCATTGTGGAAGAATATA...TGGGCAGTAATTTACATAGAGCTTTGGAAGGGACTTTACTTTCATTACTAAAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp GGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTaGCCACATGGAAGGTGTAAGAGGAGGTGTTGCTGC +
Preference number: 3 (lower is better)
Translates to: GFPGWAEHFWRA*PHGRCKRRCCC
Trigger: GCAGCAACACCTCCTCTTACACCTTCCATGTGGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp CTCTGTAGATCAGGCTGGCCTCACAGAGATCCCCCGTaGTGGGATAAAAACCATGCAGCATCAGGCCTGGCC +
Preference number: 3 (lower is better)
Translates to: LCRSGWPHRDPP*WDKNHAASGLA
Trigger: GGCCAGGCCTGATGCTGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp GTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTaGAGAGCGTGCCCACATGGAAGGTGTAAGAGGAGG +
Preference number: 3 (lower is better)
Translates to: VPSGFPGWAEHF*RACPHGRCKRR
Trigger: CCTCCTCTTACACCTTCCATGTGGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp CAGAGTGGTGGCTCCTGGGAAGCAGGGGCTAGGAGATaGTGCTCTGATAATGGACTCTTGGATGTGCGCATG +
Preference number: 3 (lower is better)
Translates to: QSGGSWEAGARR*CSDNGLLDVRM
Trigger: CATGCGCACATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTTCCCAGGAGCCACCACTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp AGTGGTGGCTCCTGGGAAGCAGGGGCTAGGAGATGCTaGTCTGATAATGGACTCTTGGATGTGCGCATGTCA +
Preference number: 3 (lower is better)
Translates to: SGGSWEAGARRC*SDNGLLDVRMS
Trigger: TGACATGCGCACATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTTCCCAGGAGCCACCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp CCTCCAGGGATGCACATGGACACACCACCCCTCCACTaGTCCAGTCTACACAGAGTCTTTGCCTTTTTCTTG +
Preference number: 3 (lower is better)
Translates to: PPGMHMDTPPLH*SSLHRVFAFFL
Trigger: CAAGAAAAAGGCAAAGACTCTGTGTAGACTGGAGCAGTGGAGGGGTGGTGTGTCCATGTGCATCCCTGGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp CCCCGTGGTGGGATAAAAACCATGCAGCATCAGGCCTaGCCTAGCAAGTCTATTCACACTGGCTGGCCATTA +
Preference number: 3 (lower is better)
Translates to: PRGGIKTMQHQA*PSKSIHTGWPL
Trigger: TAATGGCCAGCCAGTGTGAATAGACTTGCTAGGCCAGGCCTGATGCTGCATGGTTTTTATCCCACCACGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp GCTGAGCCATCTCACCAATCCATATACTGTTCCTTCTaGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGC +
Preference number: 3 (lower is better)
Translates to: AEPSHQSIYCSF*LSWVGRALLES
Trigger: GCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACAGTATATGGATTGGTGAGATGGCTCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp TGTTTCCCTCCGTGTTTAATTCCAGAGCCTGAGGGATaGAGGCCCATACAGCGAAGGCAGGAAAGCTCTGGT +
Preference number: 3 (lower is better)
Translates to: CFPPCLIPEPEG*RPIQRRQESSG
Trigger: ACCAGAGCTTTCCTGCCTTCGCTGTATGGGCCTTCATCCCTCAGGCTCTGGAATTAAACACGGAGGGAAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp AGGAGGTGTTGCTGCTGGCTGGTCACTAAAATCACATaGGCTTTTGCTAGAGTAGTAGCTGGGCCACTGCCT +
Preference number: 3 (lower is better)
Translates to: RRCCCWLVTKIT*AFARVVAGPLP
Trigger: AGGCAGTGGCCCAGCTACTACTCTAGCAAAAGCTCATGTGATTTTAGTGACCAGCCAGCAGCAACACCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp CCGCTGTCATTTGGTGCACACATGGAACACCCTAGCTaGAAGGGCTCTGTCCATGAAGTGACACTGAGATCA +
Preference number: 3 (lower is better)
Translates to: PLSFGAHMEHPS*KGSVHEVTLRS
Trigger: TGATCTCAGTGTCACTTCATGGACAGAGCCCTTTCAGCTAGGGTGTTCCATGTGTGCACCAAATGACAGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp CTTACCCATGTCTGCTGTCTCAAAGCGCCACTCCTCTaGAGCACATGTGTGGATGAGCAAAAAGAACTAGGC +
Preference number: 3 (lower is better)
Translates to: LTHVCCLKAPLL*STCVDEQKELG
Trigger: GCCTAGTTCTTTTTGCTCATCCACACATGTGCTGCAGAGGAGTGGCGCTTTGAGACAGCAGACATGGGTAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp TATTCACACTGGCTGGCCATTAAGCTTACCCATGTCTaGTGTCTCAAAGCGCCACTCCTCTGCAGCACATGT +
Preference number: 3 (lower is better)
Translates to: YSHWLAIKLTHV*CLKAPLLCSTC
Trigger: ACATGTGCTGCAGAGGAGTGGCGCTTTGAGACAGCAGACATGGGTAAGCTTAATGGCCAGCCAGTGTGAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp CATCAGGCCTGGCCTAGCAAGTCTATTCACACTGGCTaGCCATTAAGCTTACCCATGTCTGCTGTCTCAAAG +
Preference number: 3 (lower is better)
Translates to: HQAWPSKSIHTG*PLSLPMSAVSK
Trigger: CTTTGAGACAGCAGACATGGGTAAGCTTAATGGCCAGCCAGTGTGAATAGACTTGCTAGGCCAGGCCTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp TTCTTTCTGAGACAGACCTCACTCTGTAGATCAGGCTaGCCTCACAGAGATCCCCCGTGGTGGGATAAAAAC +
Preference number: 3 (lower is better)
Translates to: FFLRQTSLCRSG*PHRDPPWWDKN
Trigger: GTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACAGAGTGAGGTCTGTCTCAGAAAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp TGTTGTTTGTTTCCCTCCGTGTTTAATTCCAGAGCCTaGGGGATGAAGGCCCATACAGCGAAGGCAGGAAAG +
Preference number: 3 (lower is better)
Translates to: CCLFPSVFNSRA*GMKAHTAKAGK
Trigger: CTTTCCTGCCTTCGCTGTATGGGCCTTCATCCCTCAGGCTCTGGAATTAAACACGGAGGGAAACAAACAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp GAAGTAGCTCACACTCGAGTTGGTAGAGGCTTCAGATaGCCAAACCCACTCATGTCTGGAAGTAGAGACCCA +
Preference number: 3 (lower is better)
Translates to: EVAHTRVGRGFR*PNPLMSGSRDP
Trigger: TGGGTCTCTACTTCCAGACATGAGTGGGTTTGGTCATCTGAAGCCTCTACCAACTCGAGTGTGAGCTACTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp CAGAGTCTTTGCCTTTTTCTTGAGGCAAACTGTGTGTaGCTTCCCCGCTGTCATTTGGTGCACACATGGAAC +
Preference number: 3 (lower is better)
Translates to: QSLCLFLEANCV*LPRCHLVHTWN
Trigger: GTTCCATGTGTGCACCAAATGACAGCGGGGAAGTCACACACAGTTTGCCTCAAGAAAAAGGCAAAGACTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp ACTGCTCCAGTCTACACAGAGTCTTTGCCTTTTTCTTaGGGCAAACTGTGTGTGACTTCCCCGCTGTCATTT +
Preference number: 3 (lower is better)
Translates to: TAPVYTESLPFS*GKLCVTSPLSF
Trigger: AAATGACAGCGGGGAAGTCACACACAGTTTGCCTCAAGAAAAAGGCAAAGACTCTGTGTAGACTGGAGCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CCA 72 bp GGGATGAAGGCCCATACAGCGAAGGCAGGAAAGCTCTaGTTAGAAATGTCACTGCTACTCTTGGTCTTTATT +
Preference number: 3 (lower is better)
Translates to: GMKAHTAKAGKL*LEMSLLLLVFI
Trigger: AATAAAGACCAAGAGTAGCAGTGACATTTCTAACCAGAGCTTTCCTGCCTTCGCTGTATGGGCCTTCATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR-3UTR CAA 90 bp CTCATGTCTGGAAGTAGAGACCCAGATGGACGGTGTCACACAGGGAAGAGACAAGAATATTTACAGATGTaGTTTGTTTCCCTCCGTGTT +
Preference number: 3 (lower is better)
Translates to: LMSGSRDPDGRCHTGKRQEYLQM*FVSLRV
Trigger: AACACGGAGGGAAACAAACAACATCTGTAAATATTC...TTGTCTCTTCCCTGTGTGACACCGTCCATCTGGGTCTCTACTTCCAGACATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp GCTCTGACAGTACAGAAAAGTCAAAACCAAGAAGCTTaGTGCTCCCAGGAAAGTCCTTATCAGAGGACTCAT +
Preference number: 3 (lower is better)
Translates to: ALTVQKSQNQEA*CSQESPYQRTH
Trigger: ATGAGTCCTCTGATAAGGACTTTCCTGGGAGCAGCAAGCTTCTTGGTTTTGACTTTTCTGTACTGTCAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp AGGACCTCTGGAAGAGCATCCAGTATTTTTAACTGCTaGGCCATCTCACCAATCCATATACTGTTCCTTCTG +
Preference number: 3 (lower is better)
Translates to: RTSGRASSIFNC*AISPIHILFLL
Trigger: CAGAAGGAACAGTATATGGATTGGTGAGATGGCTCAGCAGTTAAAAATACTGGATGCTCTTCCAGAGGTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp AAAGCCACGAAGAAGCTTTTTCTCCTACGTCAGCTCTaGATAGATGCTTGCTTTCTTCTTTCTGAGACAGAC +
Preference number: 3 (lower is better)
Translates to: KATKKLFLLRQL*IDACFLLSETD
Trigger: GTCTGTCTCAGAAAGAAGAAAGCAAGCATCTATGCAGAGCTGACGTAGGAGAAAAAGCTTCTTCGTGGCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp GCGCATGTCAATATGACTGAAGTGCTCATAATTAGCTaGTTCCTTCCTGATAGACAGGATGTTTTCTCCAGA +
Preference number: 3 (lower is better)
Translates to: AHVNMTEVLIIS*FLPDRQDVFSR
Trigger: TCTGGAGAAAACATCCTGTCTATCAGGAAGGAAGCAGCTAATTATGAGCACTTCAGTCATATTGACATGCGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp GTCCCAGTTACATCAGCTTACATTAGGATGTCTTTATaGCTTGGCTTGCATACTAAATCTAGGTCTGAGCTT +
Preference number: 3 (lower is better)
Translates to: VPVTSAYIRMSL*LGLHTKSRSEL
Trigger: AAGCTCAGACCTAGATTTAGTATGCAAGCCAAGTCATAAAGACATCCTAATGTAAGCTGATGTAACTGGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp CATCAGCTTACATTAGGATGTCTTTATGACTTGGCTTaGATACTAAATCTAGGTCTGAGCTTAAACCAAGGT +
Preference number: 3 (lower is better)
Translates to: HQLTLGCLYDLA*ILNLGLSLNQG
Trigger: ACCTTGGTTTAAGCTCAGACCTAGATTTAGTATGCAAGCCAAGTCATAAAGACATCCTAATGTAAGCTGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR TCA 72 bp TCTTGTAATTCTGAGAAGATGCACATGATATGTCCATaGTGCTCTGACAGTACAGAAAAGTCAAAACCAAGA +
Preference number: 3 (lower is better)
Translates to: SCNSEKMHMICP*CSDSTEKSKPR
Trigger: TCTTGGTTTTGACTTTTCTGTACTGTCAGAGCATCATGGACATATCATGTGCATCTTCTCAGAATTACAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR GCA 72 bp AAAGTAAAGTCCCTTCCAAAGCTCTATGTAAATTACTaGCCAGCAACAATGGAAATGATTTCCTTTTGGAAA +
Preference number: 3 (lower is better)
Translates to: KVKSLPKLYVNY*PATMEMISFWK
Trigger: TTTCCAAAAGGAAATCATTTCCATTGTTGCTGGGCAGTAATTTACATAGAGCTTTGGAAGGGACTTTACTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp TGTAGATCAGGCTGGCCTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAGAGAGAGACTGGGCGTaGCCCGGCCTGGCTCCGAGA +
Preference number: 4 (lower is better)
Translates to: CRSGWPHRDPPWWDKNHAERDWA*PGLAPR
Trigger: TCTCGGAGCCAGGCCGGGCCACGCCCAGTCTCTCTC...TGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp TCCAGAGACTGCAGTGTGGATGAGGGAAACACCCGTGAGTGCTTGACCTCCAGCTGCGTACGATTCCTCTaGGGCAGGAGCAGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: SRDCSVDEGNTRECLTSSCVRFL*GRSSCR
Trigger: TCTGCAGCTGCTCCTGCCCCAGAGGAATCGTACGCA...GCTGGAGGTCAAGCACTCACGGGTGTTTCCCTCATCCACACTGCAGTCTCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TACTGTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTGCCCACTTCTCCTCTAAGGTaGGATGGCTGCGAAGCACTG +
Preference number: 4 (lower is better)
Translates to: YCSFWLSWVGRALLESVPTSPLR*DGCEAL
Trigger: CAGTGCTTCGCAGCCATCTCACCTTAGAGGAGAAGT...GGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACAGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp TGTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTGCCCACACAACGACTGAGCCCATaGGAGGAGAGACTCCCATTA +
Preference number: 4 (lower is better)
Translates to: CSFWLSWVGRALLESVPTQRLSP*EERLPL
Trigger: TAATGGGAGTCTCTCCTCCCATGGGCTCAGTCGTTG...TGTGGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TGTAGATCAGGCTGGCCTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCATTTCTCCACAACGACTaGGCCCATGGGAGGAGAGAC +
Preference number: 4 (lower is better)
Translates to: CRSGWPHRDPPWWDKNHAFLHND*AHGRRD
Trigger: GTCTCTCCTCCCATGGGCTCAGTCGTTGTGGAGAAA...TGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR GCA 90 bp TGGTGCCTGCAGGGGCCAGGAGAGGGTGTTGAGGTTTCTGGAACTGGAGTTACAAGCAGCTGCAGATCCTaGACTGAGAATAGAGATGGG +
Preference number: 4 (lower is better)
Translates to: WCLQGPGEGVEVSGTGVTSSCRS*TENRDG
Trigger: CCCATCTCTATTCTCAGTGCAGGATCTGCAGCTGCT...TGTAACTCCAGTTCCAGAAACCTCAACACCCTCTCCTGGCCCCTGCAGGCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TGGTGCCTGCAGGGGCCAGGAGAGGGTGTTGAGGTTTCTGGAACTGGAGTTACATCTTCATACTCCTCCTaGAGGTCTGTGGAGACAGAA +
Preference number: 4 (lower is better)
Translates to: WCLQGPGEGVEVSGTGVTSSYSS*RSVETE
Trigger: TTCTGTCTCCACAGACCTTCAGGAGGAGTATGAAGA...TGTAACTCCAGTTCCAGAAACCTCAACACCCTCTCCTGGCCCCTGCAGGCACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TACTGTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTGCCCGCCTCATTTTTGTTCTaGAATATGGTCATGGCCTCC +
Preference number: 4 (lower is better)
Translates to: YCSFWLSWVGRALLESVPASFLF*NMVMAS
Trigger: GGAGGCCATGACCATATTTCAGAACAAAAATGAGGC...GGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACAGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp CTCTGCAGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTGGGGCTTTTGCACTGTGACTGGATaGTGTTTCTCCACAACGACT +
Preference number: 4 (lower is better)
Translates to: LCRSSMCLVVLSSTQWGFCTVTG*CFSTTT
Trigger: AGTCGTTGTGGAGAAACATCATCCAGTCACAGTGCA...AAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCTGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TGTAGATCAGGCTGGCCTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCATTGGCAGCAGTTGCCTaGGGAATGGTTTGCACTGTG +
Preference number: 4 (lower is better)
Translates to: CRSGWPHRDPPWWDKNHALAAVA*GMVCTV
Trigger: CACAGTGCAAACCATTCCTCAGGCAACTGCTGCCAA...TGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR GCA 90 bp TGTAGATCAGGCTGGCCTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAACCACATCTTTCCACTaGCTCTGTACCACAGAGCGC +
Preference number: 4 (lower is better)
Translates to: CRSGWPHRDPPWWDKNHATTSFH*LCTTER
Trigger: GCGCTCTGTGGTACAGAGGCAGTGGAAAGATGTGGT...TGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp CTCATGTCTGGAAGTAGAGACCCAGATGGACGGTGTCACACAGGGAAGAGACAATTTTATCGACTGAACTaGGAGAGACTGGGCGTGGCC +
Preference number: 4 (lower is better)
Translates to: LMSGSRDPDGRCHTGKRQFYRLN*ERLGVA
Trigger: GGCCACGCCCAGTCTCTCTCAGTTCAGTCGATAAAA...TTGTCTCTTCCCTGTGTGACACCGTCCATCTGGGTCTCTACTTCCAGACATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TGTAGATCAGGCTGGCCTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAGTGAGCCACATGAAGTaGACACTTGTCCTCATCAGA +
Preference number: 4 (lower is better)
Translates to: CRSGWPHRDPPWWDKNHAVSHMK*TLVLIR
Trigger: TCTGATGAGGACAAGTGTTCACTTCATGTGGCTCAC...TGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAGGCCAGCCTGATCTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp GCTCCTGGGAAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGGAATGGTTTGCACTGTaGCTGGATGATGTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: APGKQGLGDAALIMDSWMEWFAL*LDDVSP
Trigger: TGGAGAAACATCATCCAGTCACAGTGCAAACCATTC...CATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTTCCCAGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp AGTGTGCTATCATGTTGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCATAAGTCCATGACTGGGTaGGATGGCTTCCTGGGTGAC +
Preference number: 4 (lower is better)
Translates to: SVLSCCCWELNSGPLEEHKSMTG*DGFLGD
Trigger: GTCACCCAGGAAGCCATCTCACCCAGTCATGGACTT...ATGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACAACATGATAGCACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp AAGGTGAGGATGGGCCACCTGTGTCAACTTTGGCTATCTGATCCTAAGGACGTTGAAGAAGTATCCAAGTaGGCAGAAGGCTCTCTTCCG +
Preference number: 4 (lower is better)
Translates to: KVRMGHLCQLWLSDPKDVEEVSK*AEGSLP
Trigger: CGGAAGAGAGCCTTCTGCTCACTTGGATACTTCTTC...AACGTCCTTAGGATCAGATAGCCAAAGTTGACACAGGTGGCCCATCCTCACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp GCCTGGCCTAGCAAGTCTATTCACACTGGCTGGCCATTAAGCTTACCCATGTCTTGGCACGAGACAGGTTaGAAATCACCTCATCCTTTC +
Preference number: 4 (lower is better)
Translates to: AWPSKSIHTGWPLSLPMSWHETG*KSPHPF
Trigger: GAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCA...AGACATGGGTAAGCTTAATGGCCAGCCAGTGTGAATAGACTTGCTAGGCCAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR GCA 90 bp GCTCCTGGGAAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGTTGAATCTCAGCCTTTaGATTTTCCAAAGCTCCAGA +
Preference number: 4 (lower is better)
Translates to: APGKQGLGDAALIMDSWMLNLSL*IFQSSR
Trigger: TCTGGAGCTTTGGAAAATGCAAAGGCTGAGATTCAA...CATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTTCCCAGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp GCCTGGCCTAGCAAGTCTATTCACACTGGCTGGCCATTAAGCTTACCCATGTCTCATCCTTTCTCCCGATaGAGATCTCAAAGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: AWPSKSIHTGWPLSLPMSHPFSR*RSQRLS
Trigger: AGAAAGCCTTTGAGATCTCCATCGGGAGAAAGGATG...AGACATGGGTAAGCTTAATGGCCAGCCAGTGTGAATAGACTTGCTAGGCCAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp CTCACAGAGATCCCCCGTGGTGGGATAAAAACCATGCAGCATCAGGCCTGGCCTTGGCTTCATAATCATTaGAGATCTGCACACATACTT +
Preference number: 4 (lower is better)
Translates to: LTEIPRGGIKTMQHQAWPWLHNH*RSAHIL
Trigger: AAGTATGTGTGCAGATCTCCAATGATTATGAAGCCA...AGGCCAGGCCTGATGCTGCATGGTTTTTATCCCACCACGGGGGATCTCTGTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp TGCCTGGAGTCCAGTTCTGACTCCTGGTCTGGAAAAGCTGGTAAGAAAATCAAGATAGAGATGGGAACGTaGAGAGAAGAGGCCGATGTA +
Preference number: 4 (lower is better)
Translates to: CLESSSDSWSGKAGKKIKIEMGT*REEADV
Trigger: TACATCGGCCTCTTCTCTTCACGTTCCCATCTCTAT...CTTGATTTTCTTACCAGCTTTTCCAGACCAGGAGTCAGAACTGGACTCCAGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp AGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTGGGGCTTTGATTCTATGGAGTCTTCGAAATaGTCTTTTTCCTGCTGCATT +
Preference number: 4 (lower is better)
Translates to: RSSMCLVVLSSTQWGFDSMESSK*SFSCCI
Trigger: AATGCAGCAGGAAAAAGACCATTTCGAAGACTCCAT...AGAATCAAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp CTCATGTCTGGAAGTAGAGACCCAGATGGACGGTGTCACACAGGGAAGAGACAATCTGAAATATGGTCATaGCCTCCAGATTTAATGCAC +
Preference number: 4 (lower is better)
Translates to: LMSGSRDPDGRCHTGKRQSEIWS*PPDLMH
Trigger: GTGCATTAAATCTGGAGGCCATGACCATATTTCAGA...TTGTCTCTTCCCTGTGTGACACCGTCCATCTGGGTCTCTACTTCCAGACATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp TGTCTCAAAGCGCCACTCCTCTGCAGCACATGTGTGGATGAGCAAAAAGAACTAGGTTTGCACTGTGACTaGATGATGTTTCTCCACAAC +
Preference number: 4 (lower is better)
Translates to: CLKAPLLCSTCVDEQKELGLHCD*MMFLHN
Trigger: GTTGTGGAGAAACATCATCCAGTCACAGTGCAAACC...TAGTTCTTTTTGCTCATCCACACATGTGCTGCAGAGGAGTGGCGCTTTGAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR GCA 90 bp AAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGTGCGCATGTTGTGAAGTCTATCCCTaGCTCATTTTTGTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: KQGLGDAALIMDSWMCACCEVYP*LIFVLK
Trigger: TTTCAGAACAAAAATGAGGCAGGGATAGACTTCACA...ACATGCGCACATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp AGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTGGGGCTTTGATTCTTTTTGTTCTGAAATATaGTCATGGCCTCCAGATTTA +
Preference number: 4 (lower is better)
Translates to: RSSMCLVVLSSTQWGFDSFCSEI*SWPPDL
Trigger: TAAATCTGGAGGCCATGACCATATTTCAGAACAAAA...AGAATCAAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR GCA 90 bp CCCAGATGGACGGTGTCACACAGGGAAGAGACAAATATTCTACTTACATCACAGATGGCTGCGAAGCACTaGATTCAACATTTGGATTCA +
Preference number: 4 (lower is better)
Translates to: PRWTVSHREETNILLTSQMAAKH*IQHLDS
Trigger: TGAATCCAAATGTTGAATGCAGTGCTTCGCAGCCAT...CTGTGATGTAAGTAGAATATTTGTCTCTTCCCTGTGTGACACCGTCCATCTGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp CGTCAGCTCTGCATAGATGCTTGCTTTCTTCTTTCTGAGACAGACCTCACTCTGCCTTTTTATTATTTGTaGAGTCTATCCCTGCCTCAT +
Preference number: 4 (lower is better)
Translates to: RQLCIDACFLLSETDLTLPFYYL*SLSLPH
Trigger: ATGAGGCAGGGATAGACTTCACAAATAATAAAAAGG...CAGAGTGAGGTCTGTCTCAGAAAGAAGAAAGCAAGCATCTATGCAGAGCTGACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp TATGACTTGGCTTGCATACTAAATCTAGGTCTGAGCTTAAACCAAGGTTTCTGTCCTTTTGCTTGCCGATaGCACGAGACAGGTTGGAAA +
Preference number: 4 (lower is better)
Translates to: YDLACILNLGLSLNQGFCPFACR*HETGWK
Trigger: TTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGG...ACAGAAACCTTGGTTTAAGCTCAGACCTAGATTTAGTATGCAAGCCAAGTCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR TCA 90 bp AAGATTTATATTCTTCCACAATGGCAATCACTGGCAGGCTGTACATGCTTAGAATTCAGCAAAGTTCTCTaGAAGTACTGGTCAGCCAGT +
Preference number: 4 (lower is better)
Translates to: KIYILPQWQSLAGCTCLEFSKVL*KYWSAS
Trigger: ACTGGCTGACCAGTACTTTCAGAGAACTTTGCTGAA...TTCTAAGCATGTACAGCCTGCCAGTGATTGCCATTGTGGAAGAATATAAATCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp GTTTTAGTAATGAAAGTAAAGTCCCTTCCAAAGCTCTATGTAAATTACTGCCCAGAAAAAGTCCATGACTaGGTGAGATGGCTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: VLVMKVKSLPKLYVNYCPEKVHD*VRWLPG
Trigger: CCCAGGAAGCCATCTCACCCAGTCATGGACTTTTTC...TGGGCAGTAATTTACATAGAGCTTTGGAAGGGACTTTACTTTCATTACTAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CCA 90 bp GTTTTAGTAATGAAAGTAAAGTCCCTTCCAAAGCTCTATGTAAATTACTGCCCAGGTGAGATGGCTTCCTaGGTGACCCTGATTTTGAAT +
Preference number: 4 (lower is better)
Translates to: VLVMKVKSLPKLYVNYCPGEMAS*VTLILN
Trigger: ATTCAAAATCAGGGTCACCCAGGAAGCCATCTCACC...TGGGCAGTAATTTACATAGAGCTTTGGAAGGGACTTTACTTTCATTACTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
3UTR CAA 72 bp GTAATCATGTCTGCCTACATTACATTTAGTCTCTCCTaGAAGTATGAGGCAGCAAGAAAAATGGCTTTTTAT +
Preference number: 4 (lower is better)
Translates to: VIMSAYITFSLS*KYEAARKMAFY
Trigger: ATAAAAAGCCATTTTTCTTGCTGCCTCATACTTCAAGGAGAGACTAAATGTAATGTAGGCAGACATGATTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp GACCGACCTGTGATCCGGGCTGTAATTGTCTTCCCAGCTTTCTGCTaGGCTGCGGTCACGACTCTTGGTGCGTACGATTCCTCTGGGGCA +
Preference number: 5 (lower is better)
Translates to: DRPVIRAVIVFPAFC*AAVTTLGAYDSSGA
Trigger: TGCCCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAGACAATTACAGCCCGGATCACAGGTCGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 90 bp TCTTCAGCCCTCGCTTGGCACGCACGTTCCACCACATCTTTCCACTaGCTCTGTACCACAGAGCGCCAGCCCTTCCAGACTTTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: SSALAWHARSTTSFH*LCTTERQPFQTFFS
Trigger: GCTGAAGAAAGTCTGGAAGGGCTGGCGCTCTGTGGTACAGAGGCAGTGGAAAGATGTGGTGGAACGTGCGTGCCAAGCGAGGGCTGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 90 bp TCAGACCGACCTGTGATCCGGGCTGTAATTGTCTTCCCAGCTTTCTaGTGGGCTGCGGTCACGACTCTTGGTGCGTACGATTCCTCTGGG +
Preference number: 5 (lower is better)
Translates to: SDRPVIRAVIVFPAF*WAAVTTLGAYDSSG
Trigger: CCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAGACAATTACAGCCCGGATCACAGGTCGGTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp ATGGTCCAGAGGGCAGCAGCTGTGACGGAACTGCTGACGGCATCGTaGACGAAGAAGTATCCAAGTGAGCAGAAGGCTCTCTTCCGGGAC +
Preference number: 5 (lower is better)
Translates to: MVQRAAAVTELLTAS*TKKYPSEQKALFRD
Trigger: GTCCCGGAAGAGAGCCTTCTGCTCACTTGGATACTTCTTCGTCCACGATGCCGTCAGCAGTTCCGTCACAGCTGCTGCCCTCTGGACCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp TTTCTGCTGGGCTGCGGTCACGACTCTTGGTGCGTACGATTCCTCTaGGGCAGGAGCAGCTGCAGATCCTGCACTGAGAATAGAGATGGG +
Preference number: 5 (lower is better)
Translates to: FLLGCGHDSWCVRFL*GRSSCRSCTENRDG
Trigger: CCCATCTCTATTCTCAGTGCAGGATCTGCAGCTGCTCCTGCCCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp TGTAATTGTCTTCCCAGCTTTCTGCTGGGCTGCGGTCACGACTCTTaGTGCGTACGATTCCTCTGGGGCAGGAGCAGCTGCAGATCCTGC +
Preference number: 5 (lower is better)
Translates to: CNCLPSFLLGCGHDS*CVRFLWGRSSCRSC
Trigger: GCAGGATCTGCAGCTGCTCCTGCCCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAGACAATTACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp CGGTTCATACAGGGAGGGGTGGAGGAGGAGGATGGGTTGATGCATTCGTCACCGATTTCCTGTCTGGATTaGACATGGCCGATCCTCCAG +
Preference number: 5 (lower is better)
Translates to: RFIQGGVEEEDGLMHSSPISCLD*TWPILQ
Trigger: CTGGAGGATCGGCCATGTCAAATCCAGACAGGAAAT...CGGTGACGAATGCATCAACCCATCCTCCTCCTCCACCCCTCCCTGTATGAACCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp GAGAGACCTAGAAGCGGAGATGCTGCTTTCAGGATGGATGGTCCGTaGGTACTTGGCAGCAGTTGCCTGAGGAATGGTTTGCACTGTGAC +
Preference number: 5 (lower is better)
Translates to: ERPRSGDAAFRMDGP*VLGSSCLRNGLHCD
Trigger: GTCACAGTGCAAACCATTCCTCAGGCAACTGCTGCCAAGTACCCACGGACCATCCATCCTGAAAGCAGCATCTCCGCTTCTAGGTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp CTCTGCAGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTGGGGCTTTATGGCACGAGACAGGTaGGAAATCACCTCATCCTTT +
Preference number: 5 (lower is better)
Translates to: LCRSSMCLVVLSSTQWGFMARDR*EITSSF
Trigger: AAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCAT...AAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCTGCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp AGGAGCAGCATGTGCTTAGTGGTCCTGAGCTCCACACAGTGGGGCTTTGATTCTCTCTATCCTCTCCTTTaGCTTGCCGATGGCACGAGA +
Preference number: 5 (lower is better)
Translates to: RSSMCLVVLSSTQWGFDSLYPLL*LADGTR
Trigger: TCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAG...AGAATCAAAGCCCCACTGTGTGGAGCTCAGGACCACTAAGCACATGCTGCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 90 bp AAGGCTTTCTGCAGCTCCTTCAGGTCCGAGATCTGGTTTGACAGCTaGTTCACGACCACCGCATGCTTTTCCTTCTCCTTCTTCATCTCC +
Preference number: 5 (lower is better)
Translates to: KAFCSSFRSEIWFDS*FTTTACFSFSFFIS
Trigger: GGAGATGAAGAAGGAGAAGGAAAAGCATGCGGTGGTCGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp ATGGAGATCTCAAAGGCTTTCTGCAGCTCCTTCAGGTCCGAGATCTaGTTTGACAGCTGCTTCACGACCACCGCATGCTTTTCCTTCTCC +
Preference number: 5 (lower is better)
Translates to: MEISKAFCSSFRSEI*FDSCFTTTACFSFS
Trigger: GGAGAAGGAAAAGCATGCGGTGGTCGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTTTGAGATCTCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp CGATGGCACGAGACAGGTTGGAAATCACCTCATCCTTTCTCCCGATaGAGATCTCAAAGGCTTTCTGCAGCTCCTTCAGGTCCGAGATCT +
Preference number: 5 (lower is better)
Translates to: RWHETGWKSPHPFSR*RSQRLSAAPSGPRS
Trigger: AGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTTTGAGATCTCCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp TACTGTTCCTTCTGGCTTTCCTGGGTGGGCAGAGCACTTCTGGAGAGCGTGCCCCTGTTGATTCTAGCTTaGGAACCAAAATCAGACCGA +
Preference number: 5 (lower is better)
Translates to: YCSFWLSWVGRALLESVPLLILA*EPKSDR
Trigger: TCGGTCTGATTTTGGTTCCAAAGCTAGAATCAACAG...GGGCACGCTCTCCAGAAGTGCTCTGCCCACCCAGGAAAGCCAGAAGGAACAGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 90 bp GATCTCAAAGGCTTTCTGCAGCTCCTTCAGGTCCGAGATCTGGTTTaGCAGCTGCTTCACGACCACCGCATGCTTTTCCTTCTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: DLKGFLQLLQVRDLV*QLLHDHRMLFLLLL
Trigger: AAGAAGGAGAAGGAAAAGCATGCGGTGGTCGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTTTGAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp AAGGTGAGGATGGGCCACCTGTGTCAACTTTGGCTATCTGATCCTAAGGACGTTGGTACTTGGCAGCAGTaGCCTGAGGAATGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: KVRMGHLCQLWLSDPKDVGTWQQ*PEEWFA
Trigger: TGCAAACCATTCCTCAGGCAACTGCTGCCAAGTACC...AACGTCCTTAGGATCAGATAGCCAAAGTTGACACAGGTGGCCCATCCTCACCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 90 bp TCCAGCGGAAGAAGCTTTTCATTAACTCTATCCTCTCCTTTTGCTTaGCGATGGCACGAGACAGGTTGGAAATCACCTCATCCTTTCTCC +
Preference number: 5 (lower is better)
Translates to: SSGRSFSLTLSSPFA*RWHETGWKSPHPFS
Trigger: GGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAATGAAAAGCTTCTTCCGCTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp TTAACTCTATCCTCTCCTTTTGCTTGCCGATGGCACGAGACAGGTTaGAAATCACCTCATCCTTTCTCCCGATGGAGATCTCAAAGGCTT +
Preference number: 5 (lower is better)
Translates to: LTLSSPFACRWHETG*KSPHPFSRWRSQRL
Trigger: AAGCCTTTGAGATCTCCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 90 bp GGAAGAAGCTTTTCATTAACTCTATCCTCTCCTTTTGCTTGCCGATaGCACGAGACAGGTTGGAAATCACCTCATCCTTTCTCCCGATGG +
Preference number: 5 (lower is better)
Translates to: GRSFSLTLSSPFACR*HETGWKSPHPFSRW
Trigger: CCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAATGAAAAGCTTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp AAGCAGGGGCTAGGAGATGCTGCTCTGATAATGGACTCTTGGATGTGCGCATGTTTTGAATCTCAGCCTTaGCATTTTCCAAAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: KQGLGDAALIMDSWMCACFESQP*HFPKLQ
Trigger: CTGGAGCTTTGGAAAATGCAAAGGCTGAGATTCAAA...ACATGCGCACATCCAAGAGTCCATTATCAGAGCAGCATCTCCTAGCCCCTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp CGTCAGCTCTGCATAGATGCTTGCTTTCTTCTTTCTGAGACAGACCTCACTCTGATCGCCAAACTGCTGTaGATTCTAGCTTTGGAACCA +
Preference number: 5 (lower is better)
Translates to: RQLCIDACFLLSETDLTLIAKLL*ILALEP
Trigger: TGGTTCCAAAGCTAGAATCAACAGCAGTTTGGCGAT...CAGAGTGAGGTCTGTCTCAGAAAGAAGAAAGCAAGCATCTATGCAGAGCTGACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 90 bp AGTACTGGTCAGCCAGTTTACCTTCATAAATTTCCTGTCTGGATTTaGCATGGCCGATCCTCCAGCGGAAGAAGCTTTTCATTAACTCTA +
Preference number: 5 (lower is better)
Translates to: STGQPVYLHKFPVWI*HGRSSSGRSFSLTL
Trigger: TAGAGTTAATGAAAAGCTTCTTCCGCTGGAGGATCGGCCATGTCAAATCCAGACAGGAAATTTATGAAGGTAAACTGGCTGACCAGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp TTTGCCTTTTTCTTGAGGCAAACTGTGTGTGACTTCCCCGCTGTCATTTGGTGCTGGGTGACCCTGATTTaGAATGGCTTGAAATATTTA +
Preference number: 5 (lower is better)
Translates to: FAFFLRQTVCDFPAVIWCWVTLI*NGLKYL
Trigger: TAAATATTTCAAGCCATTCAAAATCAGGGTCACCCA...GCACCAAATGACAGCGGGGAAGTCACACACAGTTTGCCTCAAGAAAAAGGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS-3UTR CAA 90 bp AGTGTGCTATCATGTTGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCATTTCCTGCTGCATTTTTaGAATCTCAGCCTTTGCATT +
Preference number: 5 (lower is better)
Translates to: SVLSCCCWELNSGPLEEHFLLHF*NLSLCI
Trigger: AATGCAAAGGCTGAGATTCAAAAAATGCAGCAGGAA...ATGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACAACATGATAGCACACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp CCCAGCTTTCTGCTGGGCTGCGGTCACGACTCTTGGTaGGTACGATTCCTCTGGGGCAGGAGCAGCTGCAGA +
Preference number: 6 (lower is better)
Translates to: PSFLLGCGHDSW*VRFLWGRSSCR
Trigger: TCTGCAGCTGCTCCTGCCCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp CTTCCCAGCTTTCTGCTGGGCTGCGGTCACGACTCTTaGTGCGTACGATTCCTCTGGGGCAGGAGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: LPSFLLGCGHDS*CVRFLWGRSSC
Trigger: GCAGCTGCTCCTGCCCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp CCGGGCTGTAATTGTCTTCCCAGCTTTCTGCTGGGCTaGGGTCACGACTCTTGGTGCGTACGATTCCTCTGG +
Preference number: 6 (lower is better)
Translates to: PGCNCLPSFLLG*GHDSWCVRFLW
Trigger: CCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAGACAATTACAGCCCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 72 bp GCTGCAGATCCTGCACTGAGAATAGAGATGGGAACGTaGAGAGAAGAGGCCGATGTAGCTCCGGCCGAGGTC +
Preference number: 6 (lower is better)
Translates to: AADPALRIEMGT*REEADVAPAEV
Trigger: GACCTCGGCCGGAGCTACATCGGCCTCTTCTCTTCACGTTCCCATCTCTATTCTCAGTGCAGGATCTGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp CCTGTGATCCGGGCTGTAATTGTCTTCCCAGCTTTCTaGTGGGCTGCGGTCACGACTCTTGGTGCGTACGAT +
Preference number: 6 (lower is better)
Translates to: PVIRAVIVFPAF*WAAVTTLGAYD
Trigger: ATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAGACAATTACAGCCCGGATCACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp AGGGCAGCAGCTGTGACGGAACTGCTGACGGCATCGTaGACGAAGAAGTATCCAAGTGAGCAGAAGGCTCTC +
Preference number: 6 (lower is better)
Translates to: RAAAVTELLTAS*TKKYPSEQKAL
Trigger: GAGAGCCTTCTGCTCACTTGGATACTTCTTCGTCCACGATGCCGTCAGCAGTTCCGTCACAGCTGCTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp GTGATCCGGGCTGTAATTGTCTTCCCAGCTTTCTGCTaGGCTGCGGTCACGACTCTTGGTGCGTACGATTCC +
Preference number: 6 (lower is better)
Translates to: VIRAVIVFPAFC*AAVTTLGAYDS
Trigger: GGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGGGAAGACAATTACAGCCCGGATCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp TCTTGGTGCGTACGATTCCTCTGGGGCAGGAGCAGCTaGAGATCCTGCACTGAGAATAGAGATGGGAACGTG +
Preference number: 6 (lower is better)
Translates to: SWCVRFLWGRSS*RSCTENRDGNV
Trigger: CACGTTCCCATCTCTATTCTCAGTGCAGGATCTGCAGCTGCTCCTGCCCCAGAGGAATCGTACGCACCAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp TGCAGCTCCTTCAGGTCCGAGATCTGGTTTGACAGCTaGTTCACGACCACCGCATGCTTTTCCTTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: CSSFRSEIWFDS*FTTTACFSFSF
Trigger: GAAGGAGAAGGAAAAGCATGCGGTGGTCGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp TTGGAGATCTGCACACATACTTCTTCAGCCCTCGCTTaGCACGCACGTTCCACCACATCTTTCCACTGCCTC +
Preference number: 6 (lower is better)
Translates to: LEICTHTSSALA*HARSTTSFHCL
Trigger: GAGGCAGTGGAAAGATGTGGTGGAACGTGCGTGCCAAGCGAGGGCTGAAGAAGTATGTGTGCAGATCTCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp AGAAGCGGAGATGCTGCTTTCAGGATGGATGGTCCGTaGGTACTTGGCAGCAGTTGCCTGAGGAATGGTTTG +
Preference number: 6 (lower is better)
Translates to: RSGDAAFRMDGP*VLGSSCLRNGL
Trigger: CAAACCATTCCTCAGGCAACTGCTGCCAAGTACCCACGGACCATCCATCCTGAAAGCAGCATCTCCGCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp TTCAGGATGGATGGTCCGTGGGTACTTGGCAGCAGTTaGCTGAGGAATGGTTTGCACTGTGACTGGATGATG +
Preference number: 6 (lower is better)
Translates to: FRMDGPWVLGSS*LRNGLHCDWMM
Trigger: CATCATCCAGTCACAGTGCAAACCATTCCTCAGGCAACTGCTGCCAAGTACCCACGGACCATCCATCCTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp TCAAAGGCTTTCTGCAGCTCCTTCAGGTCCGAGATCTaGTTTGACAGCTGCTTCACGACCACCGCATGCTTT +
Preference number: 6 (lower is better)
Translates to: SKAFCSSFRSEI*FDSCFTTTACF
Trigger: AAAGCATGCGGTGGTCGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 72 bp ATTGGAGATCTGCACACATACTTCTTCAGCCCTCGCTaGGCACGCACGTTCCACCACATCTTTCCACTGCCT +
Preference number: 6 (lower is better)
Translates to: IGDLHTYFFSPR*ARTFHHIFPLP
Trigger: AGGCAGTGGAAAGATGTGGTGGAACGTGCGTGCCAAGCGAGGGCTGAAGAAGTATGTGTGCAGATCTCCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 90 bp AGATCTCAAAGGCTTTCTGCAGCTCCTTCAGGTCCGAGATCTGGTTaGACAGCTGCTTCACGACCACCGCATGCTTTTCCTTCTCCTTCT +
Preference number: 6 (lower is better)
Translates to: RSQRLSAAPSGPRSG*TAASRPPHAFPSPS
Trigger: AGAAGGAGAAGGAAAAGCATGCGGTGGTCGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTTTGAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 90 bp ACTGAGCCCATGGGAGGAGAGACTCCCATTATCGCCAAACTGCTGTaGATTCTAGCTTTGGAACCAAAATCAGACCGACCTGTGATCCGG +
Preference number: 6 (lower is better)
Translates to: TEPMGGETPIIAKLL*ILALEPKSDRPVIR
Trigger: CCGGATCACAGGTCGGTCTGATTTTGGTTCCAAAGCTAGAATCAACAGCAGTTTGGCGATAATGGGAGTCTCTCCTCCCATGGGCTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 72 bp TTGCACTGTGACTGGATGATGTTTCTCCACAACGACTaGGCCCATGGGAGGAGAGACTCCCATTATCGCCAA +
Preference number: 6 (lower is better)
Translates to: LHCDWMMFLHND*AHGRRDSHYRQ
Trigger: TTGGCGATAATGGGAGTCTCTCCTCCCATGGGCTCAGTCGTTGTGGAGAAACATCATCCAGTCACAGTGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp AGCGAAGCAGCTCTTCATACTCCTCCTGAAGGTCTGTaGAGACAGAACGGTCAGAGTCATTGTGAGCCACAT +
Preference number: 6 (lower is better)
Translates to: SEAALHTPPEGL*RQNGQSHCEPH
Trigger: ATGTGGCTCACAATGACTCTGACCGTTCTGTCTCCACAGACCTTCAGGAGGAGTATGAAGAGCTGCTTCGCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp TCCTCTCCTTTTGCTTGCCGATGGCACGAGACAGGTTaGAAATCACCTCATCCTTTCTCCCGATGGAGATCT +
Preference number: 6 (lower is better)
Translates to: SSPFACRWHETG*KSPHPFSRWRS
Trigger: AGATCTCCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 72 bp ATCCTCTCCTTTTGCTTGCCGATGGCACGAGACAGGTaGGAAATCACCTCATCCTTTCTCCCGATGGAGATC +
Preference number: 6 (lower is better)
Translates to: ILSFCLPMARDR*EITSSFLPMEI
Trigger: GATCTCCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 90 bp TTCATAATCATTGGAGATCTGCACACATACTTCTTCAGCCCTCGCTaGGCACGCACGTTCCACCACATCTTTCCACTGCCTCTGTACCAC +
Preference number: 6 (lower is better)
Translates to: FIIIGDLHTYFFSPR*ARTFHHIFPLPLYH
Trigger: GTGGTACAGAGGCAGTGGAAAGATGTGGTGGAACGTGCGTGCCAAGCGAGGGCTGAAGAAGTATGTGTGCAGATCTCCAATGATTATGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 72 bp GTAGGGAATCTATCCGGTGCCACTTCTCCTCTAAGGTaGGATGGCTGCGAAGCACTGCATTCAACATTTGGA +
Preference number: 6 (lower is better)
Translates to: VGNLSGATSPLR*DGCEALHSTFG
Trigger: TCCAAATGTTGAATGCAGTGCTTCGCAGCCATCTCACCTTAGAGGAGAAGTGGCACCGGATAGATTCCCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp GAGACAGGTTGGAAATCACCTCATCCTTTCTCCCGATaGAGATCTCAAAGGCTTTCTGCAGCTCCTTCAGGT +
Preference number: 6 (lower is better)
Translates to: ETGWKSPHPFSR*RSQRLSAAPSG
Trigger: ACCTGAAGGAGCTGCAGAAAGCCTTTGAGATCTCCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 90 bp GGAGGAGAGACTCCCATTATCGCCAAACTGCTGTTGATTCTAGCTTaGGAACCAAAATCAGACCGACCTGTGATCCGGGCTGTAATTGTC +
Preference number: 6 (lower is better)
Translates to: GGETPIIAKLLLILA*EPKSDRPVIRAVIV
Trigger: GACAATTACAGCCCGGATCACAGGTCGGTCTGATTTTGGTTCCAAAGCTAGAATCAACAGCAGTTTGGCGATAATGGGAGTCTCTCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp GAATCTATCCGGTGCCACTTCTCCTCTAAGGTGAGATaGCTGCGAAGCACTGCATTCAACATTTGGATTCAC +
Preference number: 6 (lower is better)
Translates to: ESIRCHFSSKVR*LRSTAFNIWIH
Trigger: GTGAATCCAAATGTTGAATGCAGTGCTTCGCAGCCATCTCACCTTAGAGGAGAAGTGGCACCGGATAGATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 72 bp ACTCCCATTATCGCCAAACTGCTGTTGATTCTAGCTTaGGAACCAAAATCAGACCGACCTGTGATCCGGGCT +
Preference number: 6 (lower is better)
Translates to: TPIIAKLLLILA*EPKSDRPVIRA
Trigger: AGCCCGGATCACAGGTCGGTCTGATTTTGGTTCCAAAGCTAGAATCAACAGCAGTTTGGCGATAATGGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 90 bp ATTAACTCTATCCTCTCCTTTTGCTTGCCGATGGCACGAGACAGGTaGGAAATCACCTCATCCTTTCTCCCGATGGAGATCTCAAAGGCT +
Preference number: 6 (lower is better)
Translates to: INSILSFCLPMARDR*EITSSFLPMEISKA
Trigger: AGCCTTTGAGATCTCCATCGGGAGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 72 bp ATGGGAGGAGAGACTCCCATTATCGCCAAACTGCTGTaGATTCTAGCTTTGGAACCAAAATCAGACCGACCT +
Preference number: 6 (lower is better)
Translates to: MGGETPIIAKLL*ILALEPKSDRP
Trigger: AGGTCGGTCTGATTTTGGTTCCAAAGCTAGAATCAACAGCAGTTTGGCGATAATGGGAGTCTCTCCTCCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 72 bp CAGCCAGTTTACCTTCATAAATTTCCTGTCTGGATTTaGCATGGCCGATCCTCCAGCGGAAGAAGCTTTTCA +
Preference number: 6 (lower is better)
Translates to: QPVYLHKFPVWI*HGRSSSGRSFS
Trigger: TGAAAAGCTTCTTCCGCTGGAGGATCGGCCATGTCAAATCCAGACAGGAAATTTATGAAGGTAAACTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 72 bp TCATGGCCTCCAGATTTAATGCACACACTCCCCGCATaGATGCTTTCTTCATGGAGTCTTCGAAATGGTCTT +
Preference number: 6 (lower is better)
Translates to: SWPPDLMHTLPA*MLSSWSLRNGL
Trigger: AAGACCATTTCGAAGACTCCATGAAGAAAGCATTCATGCGGGGAGTGTGTGCATTAAATCTGGAGGCCATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS GCA 72 bp AGAAGCTTTTCATTAACTCTATCCTCTCCTTTTGCTTaGCGATGGCACGAGACAGGTTGGAAATCACCTCAT +
Preference number: 6 (lower is better)
Translates to: RSFSLTLSSPFA*RWHETGWKSPH
Trigger: ATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAATGAAAAGCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CCA 72 bp TTTTCATTAACTCTATCCTCTCCTTTTGCTTGCCGATaGCACGAGACAGGTTGGAAATCACCTCATCCTTTC +
Preference number: 6 (lower is better)
Translates to: FSLTLSSPFACR*HETGWKSPHPF
Trigger: GAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAATGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS CAA 72 bp AAGAAGCTTTTCATTAACTCTATCCTCTCCTTTTGCTaGCCGATGGCACGAGACAGGTTGGAAATCACCTCA +
Preference number: 6 (lower is better)
Translates to: KKLFINSILSFC*PMARDRLEITS
Trigger: TGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAATGAAAAGCTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6
CDS TCA 72 bp TTATTTGTGAAGTCTATCCCTGCCTCATTTTTGTTCTaGAATATGGTCATGGCCTCCAGATTTAATGCACAC +
Preference number: 6 (lower is better)
Translates to: LFVKSIPASFLF*NMVMASRFNAH
Trigger: GTGTGCATTAAATCTGGAGGCCATGACCATATTTCAGAACAAAAATGAGGCAGGGATAGACTTCACAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099295.6