RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POC1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023345

Ensembl transcript IDs: ENSMUST00000072206.14, ENSMUST00000191434.2, ENSMUST00000214208.2, ENSMUST00000214483.2, ENSMUST00000214540.2, ENSMUST00000216228.2, ENSMUST00000216306.2, ENSMUST00000217213.2

Found 329 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGCCCACGATGTGCTCCAGGGTGCTGGTCAGTGTCTGAGGCATGCTaGTGGACTCCTGGGGCTCGCCTTGAACTGACTCCAGACTCCTGT +
Preference number: 1 (lower is better)
Translates to: GPRCAPGCWSVSEAC*WTPGARLELTPDSC
Trigger: ACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACACTGACCAGCACCCTGGAGCACATCGTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR CCA 90 bp ATTGTCAGATGGAGAGGCTCCAGGTACAGACAGCACTTGCAGGGGTaGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGTGGCTCT +
Preference number: 1 (lower is better)
Translates to: IVRWRGSRYRQHLQG*GGGHPIPDWVRCGS
Trigger: AGAGCCACATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGCTGTCTGTACCTGGAGCCTCTCCATCTGACAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CCA 90 bp CTGCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTaGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACAGACAG +
Preference number: 1 (lower is better)
Translates to: LPSGSPVSFLCGSAH*ERPIVRWRGSRYRQ
Trigger: CTGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR TCA 90 bp GAGCTCCTGATCCTTGCTCCCCTCATCACGGTGGCGTTCTCTGCATaGTTAGCTGCTGGTTCTCCAGGCACTGCTTCAGCCTGTCTTCTG +
Preference number: 1 (lower is better)
Translates to: ELLILAPLITVAFSA*LAAGSPGTASACLL
Trigger: CAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCAAGGATCAGGAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR GCA 90 bp TGGACTCCTGGGGCTCGCCTTGAACTGACTCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAATCCATTTTTGGCTGAACCGCCTGTA +
Preference number: 1 (lower is better)
Translates to: WTPGARLELTPDSCL*LVGQANPFLAEPPV
Trigger: TACAGGCGGTTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR GCA 90 bp GATCCTTGCTCCCCTCATCACGGTGGCGTTCTCTGCATGATTAGCTaGTGGTTCTCCAGGCACTGCTTCAGCCTGTCTTCTGTTAGTGTC +
Preference number: 1 (lower is better)
Translates to: DPCSPHHGGVLCMIS*WFSRHCFSLSSVSV
Trigger: GACACTAACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCAAGGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR CCA 90 bp CCTTGCTCCCCTCATCACGGTGGCGTTCTCTGCATGATTAGCTGCTaGTTCTCCAGGCACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGT +
Preference number: 1 (lower is better)
Translates to: PCSPHHGGVLCMISC*FSRHCFSLSSVSVS
Trigger: ACTGACACTAACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR TCA 90 bp AGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTaGACCGCCTGTAGGTCTTTGCTGTCAGAGAAATCACTCTGGGTC +
Preference number: 1 (lower is better)
Translates to: RLLSLPGGTGKSIFG*TACRSLLSEKSLWV
Trigger: GACCCAGAGTGATTTCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR CCA 90 bp GGAGGGCACCCAATCCCAGACTGGGTAAGATGTGGCTCTCTCAGGTaGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTG +
Preference number: 1 (lower is better)
Translates to: GGHPIPDWVRCGSLR*DPFIYLLKSPYKSL
Trigger: CAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGAGAGCCACATCTTACCCAGTCTGGGATTGGGTGCCCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CAA 90 bp GAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACAGACAGCACTaGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGA +
Preference number: 2 (lower is better)
Translates to: ERPIVRWRGSRYRQH*QGWGGGHPIPDWVR
Trigger: TCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGCTGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CAA 90 bp CTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCATaGTCAGATGGAGAGGCTCCAGGTACAGACAGCACTTGCAGGGGT +
Preference number: 2 (lower is better)
Translates to: LQSPFCVALPTGSVP*SDGEAPGTDSTCRG
Trigger: ACCCCTGCAAGTGCTGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR-3UTR GCA 90 bp AGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACGCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAAT +
Preference number: 2 (lower is better)
Translates to: SRCSRMDTVCVRMSSWPTPDSCL*LVGQAN
Trigger: ATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGG...CGTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR-3UTR CCA 90 bp ACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGGTGAGGATGTCCAGCTaGCCCACGATGTGCTCCAGG +
Preference number: 2 (lower is better)
Translates to: TASACLLLVSVAVPEWTLVRMSS*PTMCSR
Trigger: CCTGGAGCACATCGTGGGCCAGCTGGACATCCTCAC...CAGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGCTGAAGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR-3UTR GCA 90 bp TCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCCACGGTGGCGTTCTCTaGATGATTAGCTGCTGGTTC +
Preference number: 2 (lower is better)
Translates to: SVSVSRCSRMDTVCVRMSHGGVL*MISCWF
Trigger: GAACCAGCAGCTAATCATGCAGAGAACGCCACCGTG...GGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR-3UTR GCA 90 bp ACTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCCCGCCTGTAGGTCTTTaGTGTCAGAGAAATCACTCT +
Preference number: 2 (lower is better)
Translates to: TDSRLLSLPGGTGKSIFGPPVGL*CQRNHS
Trigger: AGAGTGATTTCTCTGACAGCAAAGACCTACAGGCGG...GCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR-3UTR GCA 90 bp AAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCAACTTAGAAACCAACTGCATGTGGCCCTaGCTTCTGGGTCTCCAGTCT +
Preference number: 2 (lower is better)
Translates to: KWKEILGSSKEREVNLETNCMWP*LLGLQS
Trigger: AGACTGGAGACCCAGAAGGCAGGGCCACATGCAGTT...GGTTTCTAAGTTGACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CCA 72 bp TGGAGAGGCTCCAGGTACAGACAGCACTTGCAGGGGTaGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGA +
Preference number: 3 (lower is better)
Translates to: WRGSRYRQHLQG*GGGHPIPDWVR
Trigger: TCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGCTGTCTGTACCTGGAGCCTCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CCA 72 bp TGTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATaGAGAGGCTCCAGGTACAGACAGCACTTGCAGGGG +
Preference number: 3 (lower is better)
Translates to: CGSAHWERPIVR*RGSRYRQHLQG
Trigger: CCCCTGCAAGTGCTGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR TCA 72 bp TGTGCTCCAGGGTGCTGGTCAGTGTCTGAGGCATGCTaGTGGACTCCTGGGGCTCGCCTTGAACTGACTCCA +
Preference number: 3 (lower is better)
Translates to: CAPGCWSVSEAC*WTPGARLELTP
Trigger: TGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACACTGACCAGCACCCTGGAGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR CCA 72 bp TTGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTaGGTAAGATGTGGCTCTCTCAGGTGGGATCCCTTT +
Preference number: 3 (lower is better)
Translates to: LQGWGGGHPIPD*VRCGSLRWDPF
Trigger: AAAGGGATCCCACCTGAGAGAGCCACATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CCA 72 bp GGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTaGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGG +
Preference number: 3 (lower is better)
Translates to: GSPVSFLCGSAH*ERPIVRWRGSR
Trigger: CCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CCA 72 bp TCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTaGCCCACGATGTGCTCCAGGGTGCTGGTCAGTGTC +
Preference number: 3 (lower is better)
Translates to: SRMDTVCVRMSS*PTMCSRVLVSV
Trigger: GACACTGACCAGCACCCTGGAGCACATCGTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR GCA 72 bp GCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTaGCCACTGGGAGCGTCCCATTGTCAGATGGAGAGG +
Preference number: 3 (lower is better)
Translates to: AFWVSSLLFVWL*PLGASHCQMER
Trigger: CCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR GCA 72 bp CCTGATCCTTGCTCCCCTCATCACGGTGGCGTTCTCTaGATGATTAGCTGCTGGTTCTCCAGGCACTGCTTC +
Preference number: 3 (lower is better)
Translates to: PDPCSPHHGGVL*MISCWFSRHCF
Trigger: GAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCAAGGATCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR GCA 72 bp TCCCCTCATCACGGTGGCGTTCTCTGCATGATTAGCTaGTGGTTCTCCAGGCACTGCTTCAGCCTGTCTTCT +
Preference number: 3 (lower is better)
Translates to: SPHHGGVLCMIS*WFSRHCFSLSS
Trigger: AGAAGACAGGCTGAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR GCA 72 bp GGGGCTCGCCTTGAACTGACTCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAATCCATTTTTGGCTGAA +
Preference number: 3 (lower is better)
Translates to: GARLELTPDSCL*LVGQANPFLAE
Trigger: TTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR CCA 72 bp CCTCATCACGGTGGCGTTCTCTGCATGATTAGCTGCTaGTTCTCCAGGCACTGCTTCAGCCTGTCTTCTGTT +
Preference number: 3 (lower is better)
Translates to: PHHGGVLCMISC*FSRHCFSLSSV
Trigger: AACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
3UTR CCA 72 bp GGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGTaGCTCTCTCAGGTGGGATCCCTTTATTTATTTACT +
Preference number: 3 (lower is better)
Translates to: GRRAPNPRLGKM*LSQVGSLYLFT
Trigger: AGTAAATAAATAAAGGGATCCCACCTGAGAGAGCCACATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR TCA 72 bp TCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTaGACCGCCTGTAGGTCTTTGCTGTCAGAGAAATCA +
Preference number: 3 (lower is better)
Translates to: SLPGGTGKSIFG*TACRSLLSEKS
Trigger: TGATTTCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR CCA 72 bp CTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTaGCTGGTCTCTAGGTTGGCTGACTATACAAAGGGC +
Preference number: 3 (lower is better)
Translates to: LCCQRNHSGSIS*LVSRLADYTKG
Trigger: GCCCTTTGTATAGTCAGCCAACCTAGAGACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR GCA 72 bp GCAAATCCATTTTTGGCTGAACCGCCTGTAGGTCTTTaGTGTCAGAGAAATCACTCTGGGTCGATTTCCTGG +
Preference number: 3 (lower is better)
Translates to: ANPFLAEPPVGL*CQRNHSGSISW
Trigger: CCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
3UTR-3UTR CAA 90 bp AAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCAACTTAGAAACCAGGTACAGACAGCACTaGCAGGGGTGGGGAGGAGGG +
Preference number: 3 (lower is better)
Translates to: KWKEILGSSKEREVNLETRYRQH*QGWGGG
Trigger: CCCTCCTCCCCACCCCTGCAAGTGCTGTCTGTACCT...GGTTTCTAAGTTGACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CCA 72 bp CCAATCCCAGACTGGGTAAGATGTGGCTCTCTCAGGTaGGATCCCTTTATTTATTTACTCAAGTCCCCATAC +
Preference number: 3 (lower is better)
Translates to: PIPDWVRCGSLR*DPFIYLLKSPY
Trigger: GTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGAGAGCCACATCTTACCCAGTCTGGGATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR TCA 72 bp AAGGAGGAAGCCATGGGTCTTGGTGAATATATGTGGTaGCAGGAATTAAGGGCATTGCAAAGGCTCTACCTA +
Preference number: 3 (lower is better)
Translates to: KEEAMGLGEYMW*QELRALQRLYL
Trigger: TAGGTAGAGCCTTTGCAATGCCCTTAATTCCTGTCACCACATATATTCACCAAGACCCATGGCTTCCTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CCA 90 bp TGTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACGAGTTCCAGAAGAGCTaGTTAGGGGTGGGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: CGSAHWERPIVRWRGSRYEFQKS*LGVGAS
Trigger: GGAGGCCCCCACCCCTAACCAGCTCTTCTGGAACTC...GTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CCA 90 bp ACAGCACTTGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGGTGAGGATGTCCAGCTaGCCCACGATGTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: TALAGVGRRAPNPRLGKMVRMSS*PTMCSR
Trigger: CCTGGAGCACATCGTGGGCCAGCTGGACATCCTCAC...CATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp CTTGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGTGGCTCCGGACCCAGTTGATGTaGTGGGTCAGGGAAAACAGG +
Preference number: 4 (lower is better)
Translates to: LAGVGRRAPNPRLGKMWLRTQLM*WVRENR
Trigger: CCTGTTTTCCCTGACCCAGCACATCAACTGGGTCCG...GAGCCACATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp TGTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACAGAGGCTGTCACAAGTaGCTGGCCATCGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: CGSAHWERPIVRWRGSRYRGCHK*LAIAAE
Trigger: TTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCT...GTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp CTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCACACAGCGGACCCAGTTaGTGTGCTGGGTCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: LLGLQSPFCVALPTGSVPHSGPS*CAGSGK
Trigger: TTTCCCTGACCCAGCACATCAACTGGGTCCGCTGTG...TGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp TTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCATGCCGGCAGCAGCAATaGAGGTACCACTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: FCVALPTGSVPLSDGEAPCRQQQ*RYHWGG
Trigger: TCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCA...TGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp CTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACAGACATCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGG +
Preference number: 4 (lower is better)
Translates to: LCPLGASHCQMERLQVQTSPCCP*RQQQCR
Trigger: CCTGCATTGCTGCTGCCGGCATGGACAACACGGTGA...TGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp CAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACTCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGG +
Preference number: 4 (lower is better)
Translates to: QSLFQNGHCLREDVQLAHSPCCP*RQQQCR
Trigger: CCTGCATTGCTGCTGCCGGCATGGACAACACGGTGA...GTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR GCA 90 bp CAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACGGGTGGGGGCCTCCGTaGCTTCATGTCTCCATAATC +
Preference number: 4 (lower is better)
Translates to: QSLFQNGHCLREDVQLAHGWGPP*LHVSII
Trigger: GATTATGGAGACATGAAGGCACGGAGGCCCCCACCC...GTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR GCA 90 bp CTGCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCGATGTGCTCCAGGGTaGTGGTCAGTGTCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: LPSGSPVSFLCGSAHWERRCAPG*WSVSEA
Trigger: TGCCTCAGACACTGACCAGCACCCTGGAGCACATCG...ACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp GCACTTGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGTGGAGAATGGACACTGTCTaGGTGAGGATGTCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: ALAGVGRRAPNPRLGKMWRMDTV*VRMSSW
Trigger: CCAGCTGGACATCCTCACGCAGACAGTGTCCATTCT...CCACATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp AGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACGAGAGGCTGTCACAAGTaGCTGGCCATCGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: SRCSRMDTVCVRMSSWPTRGCHK*LAIAAE
Trigger: TTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCT...CGTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp CTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCAGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: LLGLQSPFCVALPTGSVPAVLTV*VDTFPA
Trigger: AGCCGGGAATGTATCCACTCATACTGTGAGCACGGC...TGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp CAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: QSLFQNGHCLREDVQLAHAVLTV*VDTFPA
Trigger: AGCCGGGAATGTATCCACTCATACTGTGAGCACGGC...GTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp TTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCATGTGCTCCAGGGTGCTaGTCAGTGTCTGAGGCATGC +
Preference number: 4 (lower is better)
Translates to: FCVALPTGSVPLSDGEAPCAPGC*SVSEAC
Trigger: GCATGCCTCAGACACTGACCAGCACCCTGGAGCACA...TGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp GTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGA +
Preference number: 4 (lower is better)
Translates to: VSVSRCSRMDTVCVRMSSLVSGA*GKKVSR
Trigger: TCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAG...GCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp CCTTGCTCCCCTCATCACGGTGGCGTTCTCTGCATGATTAGCTGCTGGTTCTCCAGAGGCTGTCACAAGTaGCTGGCCATCGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: PCSPHHGGVLCMISCWFSRGCHK*LAIAAE
Trigger: TTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCT...GGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp GCACTTGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGTGGTCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTT +
Preference number: 4 (lower is better)
Translates to: ALAGVGRRAPNPRLGKMWSLAMS*PHFDCL
Trigger: AAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGA...CCACATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp CCTTGCTCCCCTCATCACGGTGGCGTTCTCTGCATGATTAGCTGCTGGTTCTCCGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: PCSPHHGGVLCMISCWFSAVLTV*VDTFPA
Trigger: AGCCGGGAATGTATCCACTCATACTGTGAGCACGGC...GGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR GCA 90 bp CTGCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTGAGCCACTGGCCAAGTaGTTGGTGTTGAGACTGAAG +
Preference number: 4 (lower is better)
Translates to: LPSGSPVSFLCGSAHWEREPLAK*LVLRLK
Trigger: CTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTC...ACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp CTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTTGCCGGCAGCAGCAATaGAGGTACCACTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: LTPDSCLCLVGQANPFLACRQQQ*RYHWGG
Trigger: TCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCA...AGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp CTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACAGACAGAGGTAGTTTCCCGATaGGTGGAAGGAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: LCPLGASHCQMERLQVQTEVVSR*VEGEGI
Trigger: AATGCCCTCTCCTTCCACCCATCGGGAAACTACCTC...TGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CAA 72 bp CCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCATaGTCAGATGGAGAGGCTCCAGGTACAGACAGCACT +
Preference number: 4 (lower is better)
Translates to: PFCVALPTGSVP*SDGEAPGTDST
Trigger: AGTGCTGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp CTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTGGGTGGGGGCCTCCGTaGCTTCATGTCTCCATAATC +
Preference number: 4 (lower is better)
Translates to: LTPDSCLCLVGQANPFLAGWGPP*LHVSII
Trigger: GATTATGGAGACATGAAGGCACGGAGGCCCCCACCC...AGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp CTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: LTPDSCLCLVGQANPFLAPSLQK*TLLTVA
Trigger: GGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGG...AGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp GGTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCTCTAGGGAGTTCCAGAAGAGCTaGTTAGGGGTGGGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: GLCCQRNHSGSISWLVSREFQKS*LGVGAS
Trigger: GGAGGCCCCCACCCCTAACCAGCTCTTCTGGAACTC...CCTAGAGACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp TTTTGTGTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAACTCCTGTCTCTGCCTaGTGGGACAGGCAAATCCAT +
Preference number: 4 (lower is better)
Translates to: FCVALPTGSVPLSDGEAPTPVSA*WDRQIH
Trigger: ATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGT...TGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCACACAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp CTGCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGG +
Preference number: 4 (lower is better)
Translates to: LPSGSPVSFLCGSAHWERELTTL*LSCHQR
Trigger: CCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTC...ACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp CAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACTCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTT +
Preference number: 4 (lower is better)
Translates to: QSLFQNGHCLREDVQLAHSLAMS*PHFDCL
Trigger: AAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGA...GTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp TCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCCACAGCGGACCCAGTTaGTGTGCTGGGTCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: SVSVSRCSRMDTVCVRMSHSGPS*CAGSGK
Trigger: TTTCCCTGACCCAGCACATCAACTGGGTCCGCTGTG...GGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR GCA 90 bp ACTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCCGGACCCAGTTGATGTaGTGGGTCAGGGAAAACAGG +
Preference number: 4 (lower is better)
Translates to: TDSRLLSLPGGTGKSIFGRTQLM*WVRENR
Trigger: CCTGTTTTCCCTGACCCAGCACATCAACTGGGTCCG...GCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp CAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTGAACCGCGGACACTCCTCACTGTaGCCGTGTGTGCACGAAATA +
Preference number: 4 (lower is better)
Translates to: QTPVSAWWDRQIHFWLNRGHSSL*PCVHEI
Trigger: TATTTCGTGCACACACGGCCACAGTGAGGAGTGTCC...GCGGTTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp TCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: SVSVSRCSRMDTVCVRMSPSLQK*TLLTVA
Trigger: GGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGG...GGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp ACTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: TDSRLLSLPGGTGKSIFGAVTSD*PSLQKW
Trigger: CCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGC...GCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGTCCTTGTGGCCCGTaGAGCGGTAGGCACGTGACT +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVRPCGP*SGRHVT
Trigger: AGTCACGTGCCTACCGCTTCACGGGCCACAAGGACG...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp ACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGCACAGCGGACCCAGTTaGTGTGCTGGGTCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: TASACLLLVSVAVPEWTLHSGPS*CAGSGK
Trigger: TTTCCCTGACCCAGCACATCAACTGGGTCCGCTGTG...CAGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGCTGAAGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp GTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCCAGGATCTTCAGCGTTaGGTCACTGGAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: VSVSRCSRMDTVCVRMSSQDLQR*VTGGCD
Trigger: ATCACAGCCTCCAGTGACTCAACGCTGAAGATCCTG...GCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp ACTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCATACTCCCCCGTTCTTaGAAAGGCAACGGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: TDSRLLSLPGGTGKSIFGILPRS*KGNGGS
Trigger: GCTACCACCGTTGCCTTTTCAAGAACGGGGGAGTAT...GCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGTCTGAGGCATGCTaGTGGACTCCTGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAVSEAC*WTPGAR
Trigger: GCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACAC...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGTGTCTGAGGCATGCTaGTGGACTCCTGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPVSEAC*WTPGAR
Trigger: GCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACAC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGTGTCTGAGGCATGCTaGTGGACTCCTGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLVSEAC*WTPGAR
Trigger: GCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACAC...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCTCTAGGTTCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGG +
Preference number: 4 (lower is better)
Translates to: VFAVREITLGRFPGWSLGSPCCP*RQQQCR
Trigger: CCTGCATTGCTGCTGCCGGCATGGACAACACGGTGA...ACCTAGAGACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR GCA 90 bp GTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTTCCAGACCATCACCTaGTCATCGGAGCCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: VSVSRCSRMDTVCVRMSSFQTIT*SSEPPE
Trigger: TTCTGGAGGCTCCGATGAGCAGGTGATGGTCTGGAA...GCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp GCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCCAGGCAAATCCATTTTTaGCAGAGTTCCAGAAGAGCT +
Preference number: 4 (lower is better)
Translates to: AFWVSSLLFVWLCPLGASRQIHF*QSSRRA
Trigger: AGCTCTTCTGGAACTCTGCCAAAAATGGATTTGCCT...GGACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
3UTR CAA 72 bp TCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTaGGCTGAACCGCCTGTAGGTCTTTGCTGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: SCLCLVGQANPF*AEPPVGLCCQR
Trigger: TCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCGTCCTTGTGGCCCGTaGAGCGGTAGGCACGTGACT +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCRPCGP*SGRHVT
Trigger: AGTCACGTGCCTACCGCTTCACGGGCCACAAGGACG...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGA +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPLVSGA*GKKVSR
Trigger: TCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGA +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVLVSGA*GKKVSR
Trigger: TCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAG...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCGTGCTGGTCAGTGTCTaGGGCATGCTGATGGACTCC +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPVLVSV*GMLMDS
Trigger: GGAGTCCATCAGCATGCCTCAGACACTGACCAGCAC...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCCGGCAGCAGCAATaGAGGTACCACTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACCRQQQ*RYHWGG
Trigger: TCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCA...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCTGCCGGCAGCAGCAATaGAGGTACCACTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPCRQQQ*RYHWGG
Trigger: TCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCA...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGGGAGGGGTCAAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCGGGTGGGGGCCTCCGTaGCTTCATGTCTCCATAATC +
Preference number: 4 (lower is better)
Translates to: GGGVKWKEILGSSKEREVGWGPP*LHVSII
Trigger: GATTATGGAGACATGAAGGCACGGAGGCCCCCACCC...GACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTTGACCCCTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGAGCTGGCCCACGATGTaGTCCAGGGTGCTGGTCAGT +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLSWPTM*SRVLVS
Trigger: ACTGACCAGCACCCTGGAGCACATCGTGGGCCAGCT...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCAGCTGGCCCACGATGTaGTCCAGGGTGCTGGTCAGT +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACSWPTM*SRVLVS
Trigger: ACTGACCAGCACCCTGGAGCACATCGTGGGCCAGCT...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPPSLQK*TLLTVA
Trigger: GGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGG...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
52% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp CTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTTGCTCACAGTATGAGTaGATACATTCCCGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: LTPDSCLCLVGQANPFLACSQYE*IHSRLV
Trigger: GACCAGCCGGGAATGTATCCACTCATACTGTGAGCA...AGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGGAGTTCCAGAAGAGCTaGTTAGGGGTGGGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLEFQKS*LGVGAS
Trigger: GGAGGCCCCCACCCCTAACCAGCTCTTCTGGAACTC...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGTGAGGATGTCCAGCTaGCCCACGATGTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPVRMSS*PTMCSR
Trigger: CCTGGAGCACATCGTGGGCCAGCTGGACATCCTCAC...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTCCAGATCATGAGGGTTaGGTCCATGGAGCCACTGGC +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAPDHEG*VHGATG
Trigger: GCCAGTGGCTCCATGGACTCAACCCTCATGATCTGG...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCCAGATCATGAGGGTTaGGTCCATGGAGCCACTGGC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLPDHEG*VHGATG
Trigger: GCCAGTGGCTCCATGGACTCAACCCTCATGATCTGG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
CDS-3UTR TCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGA +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPLVSGA*GKKVSR
Trigger: TCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAG...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp TCTCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGA +
Preference number: 4 (lower is better)
Translates to: SQVGSLYLFTQVPIQIPGLVSGA*GKKVSR
Trigger: TCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAG...GCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCACAGCGGACCCAGTTaGTGTGCTGGGTCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSHSGPS*CAGSGK
Trigger: TTTCCCTGACCCAGCACATCAACTGGGTCCGCTGTG...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCCACAGCGGACCCAGTTaGTGTGCTGGGTCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACHSGPS*CAGSGK
Trigger: TTTCCCTGACCCAGCACATCAACTGGGTCCGCTGTG...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCACAGCGGACCCAGTTaGTGTGCTGGGTCAGGGAAA +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPHSGPS*CAGSGK
Trigger: TTTCCCTGACCCAGCACATCAACTGGGTCCGCTGTG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp CCTGTAGGTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCTCTTGTCCCACAGCTTaGCAGTCTTGTCATCACTGG +
Preference number: 4 (lower is better)
Translates to: PVGLCCQRNHSGSISWLVSCPTA*QSCHHW
Trigger: CCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGA...GACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGACCTACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGTGCTGGTCAGTGTCTaGGGCATGCTGATGGACTCC +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPVLVSV*GMLMDS
Trigger: GGAGTCCATCAGCATGCCTCAGACACTGACCAGCAC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGCTGGTCAGTGTCTaGGGCATGCTGATGGACTCC +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAVLVSV*GMLMDS
Trigger: GGAGTCCATCAGCATGCCTCAGACACTGACCAGCAC...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCGGACCCAGTTGATGTaGTGGGTCAGGGAAAACAGG +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPRTQLM*WVRENR
Trigger: CCTGTTTTCCCTGACCCAGCACATCAACTGGGTCCG...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTTGCCGGCAGCAGCAATaGAGGTACCACTGGGGTGGA +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCCRQQQ*RYHWGG
Trigger: TCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCA...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGTCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGG +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLSPCCP*RQQQCR
Trigger: CCTGCATTGCTGCTGCCGGCATGGACAACACGGTGA...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCGGGTGGGGGCCTCCGTaGCTTCATGTCTCCATAATC +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVGWGPP*LHVSII
Trigger: GATTATGGAGACATGAAGGCACGGAGGCCCCCACCC...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCGGGTGGGGGCCTCCGTaGCTTCATGTCTCCATAATC +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACGWGPP*LHVSII
Trigger: GATTATGGAGACATGAAGGCACGGAGGCCCCCACCC...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCGATGTGCTCCAGGGTaGTGGTCAGTGTCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLRCAPG*WSVSEA
Trigger: TGCCTCAGACACTGACCAGCACCCTGGAGCACATCG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGATGTGCTCCAGGGTaGTGGTCAGTGTCTGAGGCA +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPRCAPG*WSVSEA
Trigger: TGCCTCAGACACTGACCAGCACCCTGGAGCACATCG...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACPSLQK*TLLTVA
Trigger: GGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGG...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLPSLQK*TLLTVA
Trigger: GGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGAGTTCCAGAAGAGCTaGTTAGGGGTGGGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCEFQKS*LGVGAS
Trigger: GGAGGCCCCCACCCCTAACCAGCTCTTCTGGAACTC...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGTGCTCCAGGGTGCTaGTCAGTGTCTGAGGCATGC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLCAPGC*SVSEAC
Trigger: GCATGCCTCAGACACTGACCAGCACCCTGGAGCACA...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCTGTGCTCCAGGGTGCTaGTCAGTGTCTGAGGCATGC +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPCAPGC*SVSEAC
Trigger: GCATGCCTCAGACACTGACCAGCACCCTGGAGCACA...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGTGAGGATGTCCAGCTaGCCCACGATGTGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCVRMSS*PTMCSR
Trigger: CCTGGAGCACATCGTGGGCCAGCTGGACATCCTCAC...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCTCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCCAGATCATGAGGGTTaGGTCCATGGAGCCACTGGC +
Preference number: 4 (lower is better)
Translates to: SQVGSLYLFTQVPIQIPGPDHEG*VHGATG
Trigger: GCCAGTGGCTCCATGGACTCAACCCTCATGATCTGG...GCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCAGAGGCTGTCACAAGTaGCTGGCCATCGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPRGCHK*LAIAAE
Trigger: TTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCT...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTAGAGGCTGTCACAAGTaGCTGGCCATCGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPARGCHK*LAIAAE
Trigger: TTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCT...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGGAATCTCTGGCGATaGGTTGACCACACTTTGACT +
Preference number: 4 (lower is better)
Translates to: SVSVSRCSRMDTVCVRMSRNLWR*VDHTLT
Trigger: AGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCT...GGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSAVLTV*VDTFPA
Trigger: AGCCGGGAATGTATCCACTCATACTGTGAGCACGGC...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACAVLTV*VDTFPA
Trigger: AGCCGGGAATGTATCCACTCATACTGTGAGCACGGC...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCT +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPAVLTV*VDTFPA
Trigger: AGCCGGGAATGTATCCACTCATACTGTGAGCACGGC...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCATACTCCCCCGTTCTTaGAAAGGCAACGGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPILPRS*KGNGGS
Trigger: GCTACCACCGTTGCCTTTTCAAGAACGGGGGAGTAT...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGGGAGGGGTCAAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCGTCCACACAGGTGACTaGATCTCGGTGGCCCTTAAA +
Preference number: 4 (lower is better)
Translates to: GGGVKWKEILGSSKEREVVHTGD*ISVALK
Trigger: TTTAAGGGCCACCGAGATGCAGTCACCTGTGTGGAC...GACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTTGACCCCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGTGACTGGCCATCGCTaGAGAAGTGGACACTCCTCA +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPVTGHR*RSGHSS
Trigger: TGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCAC...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGGTGACTGGCCATCGCTaGAGAAGTGGACACTCCTCA +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLVTGHR*RSGHSS
Trigger: TGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCAC...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCGTGACTGGCCATCGCTaGAGAAGTGGACACTCCTCA +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVVTGHR*RSGHSS
Trigger: TGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCAC...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp CAGGCAAATCCATTTTTGGCTGAACCGCCTGTAGGTCTTTGCTGTCAGAGAAATGTGACTGGCCATCGCTaGAGAAGTGGACACTCCTCA +
Preference number: 4 (lower is better)
Translates to: QANPFLAEPPVGLCCQRNVTGHR*RSGHSS
Trigger: TGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCAC...ATTTCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR GCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGTGACTGGCCATCGCTaGAGAAGTGGACACTCCTCA +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSVTGHR*RSGHSS
Trigger: TGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCAC...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCGGACCCAGTTGATGTaGTGGGTCAGGGAAAACAGG +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPRTQLM*WVRENR
Trigger: CCTGTTTTCCCTGACCCAGCACATCAACTGGGTCCG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCCGGACCCAGTTGATGTaGTGGGTCAGGGAAAACAGG +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACRTQLM*WVRENR
Trigger: CCTGTTTTCCCTGACCCAGCACATCAACTGGGTCCG...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTTCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGG +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCSPCCP*RQQQCR
Trigger: CCTGCATTGCTGCTGCCGGCATGGACAACACGGTGA...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCTTCCAGACCATCACCTaGTCATCGGAGCCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPFQTIT*SSEPPE
Trigger: TTCTGGAGGCTCCGATGAGCAGGTGATGGTCTGGAA...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGGTGGGGGCCTCCGTaGCTTCATGTCTCCATAATC +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPGWGPP*LHVSII
Trigger: GATTATGGAGACATGAAGGCACGGAGGCCCCCACCC...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR GCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAAT +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPPDSCL*LVGQAN
Trigger: ATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGG...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAAT +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPPDSCL*LVGQAN
Trigger: ATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGGGGAGGGGTCAAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCGGACACTCCTCACTGTaGCCGTGTGTGCACGAAATA +
Preference number: 4 (lower is better)
Translates to: GGGVKWKEILGSSKEREVGHSSL*PCVHEI
Trigger: TATTTCGTGCACACACGGCCACAGTGAGGAGTGTCC...GACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTTGACCCCTCCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCC +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPPSLQK*TLLTVA
Trigger: GGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGG...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLAVTSD*PSLQKW
Trigger: CCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGC...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPAVTSD*PSLQKW
Trigger: CCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGC...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACAVTSD*PSLQKW
Trigger: CCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGC...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCACTCCTGTCTCTGCCTaGTGGGACAGGCAAATCCAT +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPTPVSA*WDRQIH
Trigger: ATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGT...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTAGAGGCTGTCACAAGTaGCTGGCCATCGCTGCAGAA +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPRGCHK*LAIAAE
Trigger: TTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCT...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp ACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGG +
Preference number: 4 (lower is better)
Translates to: TASACLLLVSVAVPEWTLELTTL*LSCHQR
Trigger: CCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTC...CAGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGCTGAAGCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp GTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCTCTAGGTGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGG +
Preference number: 4 (lower is better)
Translates to: VFAVREITLGRFPGWSLGELTTL*LSCHQR
Trigger: CCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTC...ACCTAGAGACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCTCTTGTCCCACAGCTTaGCAGTCTTGTCATCACTGG +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPSCPTA*QSCHHW
Trigger: CCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGA...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCTAAGGAAAGAGAAGTCAACTTAGAAACCAGTCGGGAGGCTGAAGGTGAGGTACAGGATCTTCAGCGTTaGGTCACTGGAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: SKEREVNLETSREAEGEVQDLQR*VTGGCD
Trigger: ATCACAGCCTCCAGTGACTCAACGCTGAAGATCCTG...TACCTCACCTTCAGCCTCCCGACTGGTTTCTAAGTTGACTTCTCTTTCCTTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCAGGATCTTCAGCGTTaGGTCACTGGAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLQDLQR*VTGGCD
Trigger: ATCACAGCCTCCAGTGACTCAACGCTGAAGATCCTG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTCAGGATCTTCAGCGTTaGGTCACTGGAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAQDLQR*VTGGCD
Trigger: ATCACAGCCTCCAGTGACTCAACGCTGAAGATCCTG...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCAGGATCTTCAGCGTTaGGTCACTGGAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPQDLQR*VTGGCD
Trigger: ATCACAGCCTCCAGTGACTCAACGCTGAAGATCCTG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCATACTCCCCCGTTCTTaGAAAGGCAACGGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPILPRS*KGNGGS
Trigger: GCTACCACCGTTGCCTTTTCAAGAACGGGGGAGTAT...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGATACTCCCCCGTTCTTaGAAAGGCAACGGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLILPRS*KGNGGS
Trigger: GCTACCACCGTTGCCTTTTCAAGAACGGGGGAGTAT...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGTGGCGTTCTCTGCATaGTTAGCTGCTGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLVAFSA*LAAGSP
Trigger: TGGAGAACCAGCAGCTAATCATGCAGAGAACGCCAC...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGTGGCGTTCTCTGCATaGTTAGCTGCTGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPVAFSA*LAAGSP
Trigger: TGGAGAACCAGCAGCTAATCATGCAGAGAACGCCAC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGTGGCGTTCTCTGCATaGTTAGCTGCTGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSVAFSA*LAAGSP
Trigger: TGGAGAACCAGCAGCTAATCATGCAGAGAACGCCAC...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCAGCTGTAGCATTCCCTaGGAAGCCCAGAGTTCCAGA +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACSCSIP*EAQSSR
Trigger: TCTGGAACTCTGGGCTTCTCAGGGAATGCTACAGCT...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214483.2
CDS-3UTR GCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGTCCACACAGGTGACTaGATCTCGGTGGCCCTTAAA +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLVHTGD*ISVALK
Trigger: TTTAAGGGCCACCGAGATGCAGTCACCTGTGTGGAC...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
CDS-3UTR GCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGAGCCACTGGCCAAGTaGTTGGTGTTGAGACTGAAG +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLEPLAK*LVLRLK
Trigger: CTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTC...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCATTGGGTACCCAGATaGGAACAGTCTTGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLHWVPR*EQSCLG
Trigger: CCCGAGACAAGACTGTTCGCATCTGGGTACCCAATG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCATTGGGTACCCAGATaGGAACAGTCTTGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPHWVPR*EQSCLG
Trigger: CCCGAGACAAGACTGTTCGCATCTGGGTACCCAATG...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCATTGGGTACCCAGATaGGAACAGTCTTGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVHWVPR*EQSCLG
Trigger: CCCGAGACAAGACTGTTCGCATCTGGGTACCCAATG...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp CAGGCAAATCCATTTTTGGCTGAACCGCCTGTAGGTCTTTGCTGTCAGAGAAATCATTGGGTACCCAGATaGGAACAGTCTTGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: QANPFLAEPPVGLCCQRNHWVPR*EQSCLG
Trigger: CCCGAGACAAGACTGTTCGCATCTGGGTACCCAATG...ATTTCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR GCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCATTGGGTACCCAGATaGGAACAGTCTTGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLHWVPR*EQSCLG
Trigger: CCCGAGACAAGACTGTTCGCATCTGGGTACCCAATG...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGTGACTGGCCATCGCTaGAGAAGTGGACACTCCTCA +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPVTGHR*RSGHSS
Trigger: TGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCAC...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR GCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCTTCCAGACCATCACCTaGTCATCGGAGCCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPFQTIT*SSEPPE
Trigger: TTCTGGAGGCTCCGATGAGCAGGTGATGGTCTGGAA...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGTTCCAGACCATCACCTaGTCATCGGAGCCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLFQTIT*SSEPPE
Trigger: TTCTGGAGGCTCCGATGAGCAGGTGATGGTCTGGAA...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTTCCAGACCATCACCTaGTCATCGGAGCCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACFQTIT*SSEPPE
Trigger: TTCTGGAGGCTCCGATGAGCAGGTGATGGTCTGGAA...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGAGAATGGACACTGTCTaGGTGAGGATGTCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLRMDTV*VRMSSW
Trigger: CCAGCTGGACATCCTCACGCAGACAGTGTCCATTCT...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCTGGTTCTCCAGGCACTaGTTCAGCCTGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPWFSRH*FSLSSV
Trigger: AACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCA...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp TCTAAGGAAAGAGAAGTCAACTTAGAAACCAGTCGGGAGGCTGAAGGTGAGGTACACGGTGGCGTTCTCTaGATGATTAGCTGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: SKEREVNLETSREAEGEVHGGVL*MISCWF
Trigger: GAACCAGCAGCTAATCATGCAGAGAACGCCACCGTG...TACCTCACCTTCAGCCTCCCGACTGGTTTCTAAGTTGACTTCTCTTTCCTTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCACGGTGGCGTTCTCTaGATGATTAGCTGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLHGGVL*MISCWF
Trigger: GAACCAGCAGCTAATCATGCAGAGAACGCCACCGTG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCACGGTGGCGTTCTCTaGATGATTAGCTGCTGGTTC +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVHGGVL*MISCWF
Trigger: GAACCAGCAGCTAATCATGCAGAGAACGCCACCGTG...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCAGACTCCTGTCTCTaGCTGCACTCCAGCATTCAA +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVPDSCL*LHSSIQ
Trigger: TTGAATGCTGGAGTGCAGGCAGAGACAGGAGTCTGG...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214483.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGGGACACTCCTCACTGTaGCCGTGTGTGCACGAAATA +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLGHSSL*PCVHEI
Trigger: TATTTCGTGCACACACGGCCACAGTGAGGAGTGTCC...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGG +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCAVTSD*PSLQKW
Trigger: CCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGC...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCTCTAGGTACCCAGTTGATGTGCTaGGTCAGGGAAAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: VFAVREITLGRFPGWSLGTQLMC*VRENRN
Trigger: ATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT...ACCTAGAGACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CCA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCTGCTCACAGTATGAGTaGATACATTCCCGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPCSQYE*IHSRLV
Trigger: GACCAGCCGGGAATGTATCCACTCATACTGTGAGCA...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGAGGTAGTTTCCCGATaGGTGGAAGGAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAEVVSR*VEGEGI
Trigger: AATGCCCTCTCCTTCCACCCATCGGGAAACTACCTC...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCGAGGTAGTTTCCCGATaGGTGGAAGGAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACEVVSR*VEGEGI
Trigger: AATGCCCTCTCCTTCCACCCATCGGGAAACTACCTC...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGAGGTAGTTTCCCGATaGGTGGAAGGAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPEVVSR*VEGEGI
Trigger: AATGCCCTCTCCTTCCACCCATCGGGAAACTACCTC...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp CAGGCAAATCCATTTTTGGCTGAACCGCCTGTAGGTCTTTGCTGTCAGAGAAATGAGGTAGTTTCCCGATaGGTGGAAGGAGAGGGCATT +
Preference number: 4 (lower is better)
Translates to: QANPFLAEPPVGLCCQRNEVVSR*VEGEGI
Trigger: AATGCCCTCTCCTTCCACCCATCGGGAAACTACCTC...ATTTCTCTGACAGCAAAGACCTACAGGCGGTTCAGCCAAAAATGGATTTGCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR TCA 90 bp TCTAAGGAAAGAGAAGTCAACTTAGAAACCAGTCGGGAGGCTGAAGGTGAGGTATCTTGTCCCACAGCTTaGCAGTCTTGTCATCACTGG +
Preference number: 4 (lower is better)
Translates to: SKEREVNLETSREAEGEVSCPTA*QSCHHW
Trigger: CCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGA...TACCTCACCTTCAGCCTCCCGACTGGTTTCTAAGTTGACTTCTCTTTCCTTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCTCTTGTCCCACAGCTTaGCAGTCTTGTCATCACTGG +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPSCPTA*QSCHHW
Trigger: CCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGA...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCTTGTCCCACAGCTTaGCAGTCTTGTCATCACTGG +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLSCPTA*QSCHHW
Trigger: CCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGA...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTCAGGATCTTCAGCGTTaGGTCACTGGAGGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPQDLQR*VTGGCD
Trigger: ATCACAGCCTCCAGTGACTCAACGCTGAAGATCCTG...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR TCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTATACTCCCCCGTTCTTaGAAAGGCAACGGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCILPRS*KGNGGS
Trigger: GCTACCACCGTTGCCTTTTCAAGAACGGGGGAGTAT...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp AAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCAACTTAGAAACCGTGTCTGAGGCATGCTaGTGGACTCCTGGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: KWKEILGSSKEREVNLETVSEAC*WTPGAR
Trigger: GCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACAC...GGTTTCTAAGTTGACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR TCA 90 bp TCTCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCGTGGCGTTCTCTGCATaGTTAGCTGCTGGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: SQVGSLYLFTQVPIQIPGVAFSA*LAAGSP
Trigger: TGGAGAACCAGCAGCTAATCATGCAGAGAACGCCAC...GCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
CDS-3UTR GCA 90 bp TCTCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCGAGCCACTGGCCAAGTaGTTGGTGTTGAGACTGAAG +
Preference number: 4 (lower is better)
Translates to: SQVGSLYLFTQVPIQIPGEPLAK*LVLRLK
Trigger: CTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTC...GCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR GCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTAGAATGGACACTGTCTaGGTGAGGATGTCCAGCTGG +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCRMDTV*VRMSSW
Trigger: CCAGCTGGACATCCTCACGCAGACAGTGTCCATTCT...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCTGGTTCTCCAGGCACTaGTTCAGCCTGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPWFSRH*FSLSSV
Trigger: AACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCA...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGGTTCTCCAGGCACTaGTTCAGCCTGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLWFSRH*FSLSSV
Trigger: AACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCA...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR GCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCTGGTTCTCCAGGCACTaGTTCAGCCTGTCTTCTGTT +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSWFSRH*FSLSSV
Trigger: AACAGAAGACAGGCTGAAGCAGTGCCTGGAGAACCA...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGTGACTGCATCTCGGTaGCCCTTAAAATGTCTCTCC +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPVTASR*PLKCLS
Trigger: GGAGAGACATTTTAAGGGCCACCGAGATGCAGTCAC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
CDS-3UTR CCA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGACACTCCTCACTGTaGCCGTGTGTGCACGAAATA +
Preference number: 4 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPGHSSL*PCVHEI
Trigger: TATTTCGTGCACACACGGCCACAGTGAGGAGTGTCC...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTGCTCACAGTATGAGTaGATACATTCCCGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLCSQYE*IHSRLV
Trigger: GACCAGCCGGGAATGTATCCACTCATACTGTGAGCA...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCTGCTCACAGTATGAGTaGATACATTCCCGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSCSQYE*IHSRLV
Trigger: GACCAGCCGGGAATGTATCCACTCATACTGTGAGCA...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGTGCTCACAGTATGAGTaGATACATTCCCGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLCSQYE*IHSRLV
Trigger: GACCAGCCGGGAATGTATCCACTCATACTGTGAGCA...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCTGCATGATTAGCTGCTaGTTCTCCAGGCACTGCTTC +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPCMISC*FSRHCF
Trigger: GAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCA...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTTGCATGATTAGCTGCTaGTTCTCCAGGCACTGCTTC +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPACMISC*FSRHCF
Trigger: GAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCA...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCATGATTAGCTGCTaGTTCTCCAGGCACTGCTTC +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACCMISC*FSRHCF
Trigger: GAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCA...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCTGCATGATTAGCTGCTaGTTCTCCAGGCACTGCTTC +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSCMISC*FSRHCF
Trigger: GAAGCAGTGCCTGGAGAACCAGCAGCTAATCATGCA...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGG +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAELTTL*LSCHQR
Trigger: CCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTC...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGG +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSELTTL*LSCHQR
Trigger: CCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTC...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGG +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLELTTL*LSCHQR
Trigger: CCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTC...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTTCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTT +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPASLAMS*PHFDCL
Trigger: AAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGA...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCTCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTT +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVSLAMS*PHFDCL
Trigger: AAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGA...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCTCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTT +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPSLAMS*PHFDCL
Trigger: AAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGA...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTT +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLSLAMS*PHFDCL
Trigger: AAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGA...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGAGGAATCTCTGGCGATaGGTTGACCACACTTTGACT +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLRNLWR*VDHTLT
Trigger: AGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCT...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCAGGAATCTCTGGCGATaGGTTGACCACACTTTGACT +
Preference number: 4 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVRNLWR*VDHTLT
Trigger: AGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCT...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCAGGAATCTCTGGCGATaGGTTGACCACACTTTGACT +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSRNLWR*VDHTLT
Trigger: AGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCT...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTTCTTGTCCCACAGCTTaGCAGTCTTGTCATCACTGG +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCSCPTA*QSCHHW
Trigger: CCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGA...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TCTCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCGTGACTGCATCTCGGTaGCCCTTAAAATGTCTCTCC +
Preference number: 4 (lower is better)
Translates to: SQVGSLYLFTQVPIQIPGVTASR*PLKCLS
Trigger: GGAGAGACATTTTAAGGGCCACCGAGATGCAGTCAC...GCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
CDS-3UTR CCA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGAAGAAGGTGTCCCGATaGGGAGAAATTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLKKVSR*GEIHTG
Trigger: ACCTGTGTGAATTTCTCCCCATCGGGACACCTTCTT...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCACCCAGTTGATGTGCTaGGTCAGGGAAAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPTQLMC*VRENRN
Trigger: ATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTACCCAGTTGATGTGCTaGGTCAGGGAAAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPATQLMC*VRENRN
Trigger: ATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCACCCAGTTGATGTGCTaGGTCAGGGAAAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPTQLMC*VRENRN
Trigger: ATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCACCCAGTTGATGTGCTaGGTCAGGGAAAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSTQLMC*VRENRN
Trigger: ATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTTGCTCACAGTATGAGTaGATACATTCCCGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCCSQYE*IHSRLV
Trigger: GACCAGCCGGGAATGTATCCACTCATACTGTGAGCA...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR TCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTAGGAATCTCTGGCGATaGGTTGACCACACTTTGACT +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCRNLWR*VDHTLT
Trigger: AGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCT...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTAAGAAGGTGTCCCGATaGGGAGAAATTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCKKVSR*GEIHTG
Trigger: ACCTGTGTGAATTTCTCCCCATCGGGACACCTTCTT...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTACCCAGTTGATGTGCTaGGTCAGGGAAAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCTQLMC*VRENRN
Trigger: ATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCAGGCAAATCCATTTTTaGCAGAGTTCCAGAAGAGCT +
Preference number: 4 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACRQIHF*QSSRRA
Trigger: AGCTCTTCTGGAACTCTGCCAAAAATGGATTTGCCT...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000217213.2
CDS-3UTR CCA 90 bp AAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCAACTTAGAAACCAAGAAGGTGTCCCGATaGGGAGAAATTCACACAGGT +
Preference number: 4 (lower is better)
Translates to: KWKEILGSSKEREVNLETKKVSR*GEIHTG
Trigger: ACCTGTGTGAATTTCTCCCCATCGGGACACCTTCTT...GGTTTCTAAGTTGACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS GCA 90 bp ACAGCCGATGAGTCCGCGCATCCCACACCTTCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGGTACCACTGGGGTGGAAGTCCACGT +
Preference number: 5 (lower is better)
Translates to: TADESAHPTPSPCCP*RQQQCRYHWGGSPR
Trigger: ACGTGGACTTCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTGGGATGCGCGGACTCATCGGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp ACAGCACTTGCAGGGGTGGGGAGGAGGGCACCCAATCCCAGACTGGGTAAGATGGCACAGCGGACCCAGTaGATGTGCTGGGTCAGGGAA +
Preference number: 5 (lower is better)
Translates to: TALAGVGRRAPNPRLGKMAQRTQ*MCWVRE
Trigger: TTCCCTGACCCAGCACATCAACTGGGTCCGCTGTGC...CATCTTACCCAGTCTGGGATTGGGTGCCCTCCTCCCCACCCCTGCAAGTGCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CAA 90 bp CTGCCTTCTGGGTCTCCAGTCTCCTTTTTGTGTGGCTCTGCCCACTGGGAGCGTCCGTCAGGGGAGAACTaGGCACAGCGGACCCAGTTG +
Preference number: 5 (lower is better)
Translates to: LPSGSPVSFLCGSAHWERPSGEN*AQRTQL
Trigger: CAACTGGGTCCGCTGTGCCAAGTTCTCCCCTGACGG...ACGCTCCCAGTGGGCAGAGCCACACAAAAAGGAGACTGGAGACCCAGAAGGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CAA 90 bp CAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACCCGTCAGGGGAGAACTaGGCACAGCGGACCCAGTTG +
Preference number: 5 (lower is better)
Translates to: QSLFQNGHCLREDVQLAHPSGEN*AQRTQL
Trigger: CAACTGGGTCCGCTGTGCCAAGTTCTCCCCTGACGG...GTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS TCA 90 bp CACCTGCTCATCGGAGCCTCCAGAAGCGAAATACTCCCCCGTTCTTaGAAAGGCAACGGTGGTAGCAGGCCCCTGGTGCCCATGGAGCGT +
Preference number: 5 (lower is better)
Translates to: HLLIGASRSEILPRS*KGNGGSRPLVPMER
Trigger: ACGCTCCATGGGCACCAGGGGCCTGCTACCACCGTTGCCTTTTCAAGAACGGGGGAGTATTTCGCTTCTGGAGGCTCCGATGAGCAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACACCACTGGCCAAGTGCTaGGTGTTGAGACTGAAGTCC +
Preference number: 5 (lower is better)
Translates to: VALPTGSVPLSDGEAPGTPLAKC*VLRLKS
Trigger: GGACTTCAGTCTCAACACCAAGCACTTGGCCAGTGG...TGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS TCA 90 bp CAGTGTCTGAGGCATGCTGATGGACTCCTGGGGCTCGCCTTGAACTaGCTCCAGACTCCTGTCTCTGCCTGCACTCCAGCATTCAAGAGC +
Preference number: 5 (lower is better)
Translates to: QCLRHADGLLGLALN*LQTPVSACTPAFKS
Trigger: GCTCTTGAATGCTGGAGTGCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCATCAGCATGCCTCAGACACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214483.2
CDS GCA 90 bp TGGACTCCTGGGGCTCGCCTTGAACTGACTCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAATCCATTTTTGGCTGCACTCCAGCAT +
Preference number: 5 (lower is better)
Translates to: WTPGARLELTPDSCL*LVGQANPFLAALQH
Trigger: ATGCTGGAGTGCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216306.2
CDS-3UTR CAA 90 bp CTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACAGACAGCCAAGTGCTTGGTGTaGAGACTGAAGTCCACACAG +
Preference number: 5 (lower is better)
Translates to: LCPLGASHCQMERLQVQTAKCLV*RLKSTQ
Trigger: CTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGC...TGTCTGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CAA 90 bp CTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTGCACAGCGGACCCAGTaGATGTGCTGGGTCAGGGAA +
Preference number: 5 (lower is better)
Translates to: LTPDSCLCLVGQANPFLAAQRTQ*MCWVRE
Trigger: TTCCCTGACCCAGCACATCAACTGGGTCCGCTGTGC...AGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp CTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTCACACCTTCACCGTGTaGTCCATGCCGGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: LTPDSCLCLVGQANPFLAHTFTV*SMPAAA
Trigger: TGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTG...AGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS GCA 90 bp TGGACTCCTGGGGCTCGCCTTGAACTGACTCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAATCCATTTTTGGCAGAGTTCCAGAAG +
Preference number: 5 (lower is better)
Translates to: WTPGARLELTPDSCL*LVGQANPFLAEFQK
Trigger: CTTCTGGAACTCTGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000216228.2
ENSMUST00000217213.2
CDS CCA 90 bp TGCTTGGTGTTGAGACTGAAGTCCACACAGGTGACTGCATCTCGGTaGCCCTTAAAATGTCTCTCCAGTGAGGGGTCCTGGCTGGGAGCA +
Preference number: 5 (lower is better)
Translates to: CLVLRLKSTQVTASR*PLKCLSSEGSWLGA
Trigger: TGCTCCCAGCCAGGACCCCTCACTGGAGAGACATTTTAAGGGCCACCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAACACCAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191434.2
CDS-3UTR CAA 90 bp GTGGCTCTGCCCACTGGGAGCGTCCCATTGTCAGATGGAGAGGCTCCAGGTACACACACTTTGACTGTCTaGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: VALPTGSVPLSDGEAPGTHTLTV*SSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTG...TGTACCTGGAGCCTCTCCATCTGACAATGGGACGCTCCCAGTGGGCAGAGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CAA 90 bp GTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCTCTAGGTCCGTCAGGGGAGAACTaGGCACAGCGGACCCAGTTG +
Preference number: 5 (lower is better)
Translates to: VFAVREITLGRFPGWSLGPSGEN*AQRTQL
Trigger: CAACTGGGTCCGCTGTGCCAAGTTCTCCCCTGACGG...ACCTAGAGACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp AGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACGGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTG +
Preference number: 5 (lower is better)
Translates to: SRCSRMDTVCVRMSSWPTVLSHS*TVLSSL
Trigger: CAGTGATGACAAGACTGTCAAGCTGTGGGACAAGAC...CGTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS GCA 90 bp ATGTGCCAGATCATGAGGGTTGAGTCCATGGAGCCACTGGCCAAGTaGTTGGTGTTGAGACTGAAGTCCACACAGGTGACTGCATCTCGG +
Preference number: 5 (lower is better)
Translates to: MCQIMRVESMEPLAK*LVLRLKSTQVTASR
Trigger: CCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTCCATGGACTCAACCCTCATGATCTGGCACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000216306.2
CDS CCA 90 bp GACCACACTTTGACTGTCTTGTCATCAGAGGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGGACACTCCTCACTGTGGCCGTGTGT +
Preference number: 5 (lower is better)
Translates to: DHTLTVLSSEAVTSD*PSLQKWTLLTVAVC
Trigger: ACACACGGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp CCTGTAGGTCTTTGCTGTCAGAGAAATCACTCTGGGTCGATTTCCTGGCTGGTCCAGATGCGAACAGTCTaGTCTCGGGAGCCTGAGGCA +
Preference number: 5 (lower is better)
Translates to: PVGLCCQRNHSGSISWLVQMRTV*SREPEA
Trigger: TGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTG...GACCAGCCAGGAAATCGACCCAGAGTGATTTCTCTGACAGCAAAGACCTACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp CAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCTGGCCCACACAGTTGACTCACCTTaGACATTGGGTACCCAGATG +
Preference number: 5 (lower is better)
Translates to: QSLFQNGHCLREDVQLAHTVDSP*TLGTQM
Trigger: CATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT...GTGGGCCAGCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp CAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCTGAACCGCCACAGCTTGACAGTCTaGTCATCACTGGCAGACACG +
Preference number: 5 (lower is better)
Translates to: QTPVSAWWDRQIHFWLNRHSLTV*SSLADT
Trigger: CGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTG...GCGGTTCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp TCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCCATTCCCGGCTGGTCTaGTCCCACAGCTTGACAGTC +
Preference number: 5 (lower is better)
Translates to: SVSVSRCSRMDTVCVRMSHSRLV*SHSLTV
Trigger: GACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATG...GGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp CACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTCACACCTTCACCGTGTaGTCCATGCCGGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: HCFSLSSVSVSRCSRMDTHTFTV*SMPAAA
Trigger: TGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTG...AGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGCTGAAGCAGTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS TCA 90 bp TTTGACATTGGGTACCCAGATGCGAACAGTCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGATGGGGAGAAATTCACACAGGTCAC +
Preference number: 5 (lower is better)
Translates to: FDIGYPDANSLVSGA*GKKVSRWGEIHTGH
Trigger: GTGACCTGTGTGAATTTCTCCCCATCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTGGGTACCCAATGTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CCA 90 bp TTGTCATCAGAGGCTGTCACAAGTGACTGGCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCCGTGTGTGCACGAAATACAGTTGAC +
Preference number: 5 (lower is better)
Translates to: LSSEAVTSDWPSLQK*TLLTVAVCARNTVD
Trigger: GTCAACTGTATTTCGTGCACACACGGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCTGATGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TGCTCCCCTCATCACGGTGGCGTTCTCTGCATGATTAGCTGCTGGTTCTCCAGGCACACTTTGACTGTCTaGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: CSPHHGGVLCMISCWFSRHTLTV*SSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTG...CCTGGAGAACCAGCAGCTAATCATGCAGAGAACGCCACCGTGATGAGGGGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR CAA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCCCGTCAGGGGAGAACTaGGCACAGCGGACCCAGTTG +
Preference number: 5 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACPSGEN*AQRTQL
Trigger: CAACTGGGTCCGCTGTGCCAAGTTCTCCCCTGACGG...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTCCGTCAGGGGAGAACTaGGCACAGCGGACCCAGTTG +
Preference number: 5 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAPSGEN*AQRTQL
Trigger: CAACTGGGTCCGCTGTGCCAAGTTCTCCCCTGACGG...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCACACCTTCACCGTGTaGTCCATGCCGGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPHTFTV*SMPAAA
Trigger: TGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTG...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS TCA 90 bp GGGTCAGGGAAAACAGGAATCTCTGGCGATGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGGCTGTCACAAGTGACTGGCCATCGC +
Preference number: 5 (lower is better)
Translates to: GSGKTGISGDELTTL*LSCHQRLSQVTGHR
Trigger: GCGATGGCCAGTCACTTGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCTGTTTTCCCTGACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCAGATGCGAACAGTCTaGTCTCGGGAGCCTGAGGCA +
Preference number: 5 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPQMRTV*SREPEA
Trigger: TGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTG...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCGACTCACCTTTGACATaGGGTACCCAGATGCGAACA +
Preference number: 5 (lower is better)
Translates to: VSVSRCSRMDTVCVRMSSDSPLT*GTQMRT
Trigger: TGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTC...GCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCACAGCGGACCCAGTaGATGTGCTGGGTCAGGGAA +
Preference number: 5 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAAQRTQ*MCWVRE
Trigger: TTCCCTGACCCAGCACATCAACTGGGTCCGCTGTGC...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCGCACAGCGGACCCAGTaGATGTGCTGGGTCAGGGAA +
Preference number: 5 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVAQRTQ*MCWVRE
Trigger: TTCCCTGACCCAGCACATCAACTGGGTCCGCTGTGC...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGCACAGCGGACCCAGTaGATGTGCTGGGTCAGGGAA +
Preference number: 5 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPAQRTQ*MCWVRE
Trigger: TTCCCTGACCCAGCACATCAACTGGGTCCGCTGTGC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGCACAGCGGACCCAGTaGATGTGCTGGGTCAGGGAA +
Preference number: 5 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLAQRTQ*MCWVRE
Trigger: TTCCCTGACCCAGCACATCAACTGGGTCCGCTGTGC...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCACACCTTCACCGTGTaGTCCATGCCGGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLHTFTV*SMPAAA
Trigger: TGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTG...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCACACCTTCACCGTGTaGTCCATGCCGGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVHTFTV*SMPAAA
Trigger: TGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTG...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCAGATGCGAACAGTCTaGTCTCGGGAGCCTGAGGCA +
Preference number: 5 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPQMRTV*SREPEA
Trigger: TGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCAGATGCGAACAGTCTaGTCTCGGGAGCCTGAGGCA +
Preference number: 5 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPQMRTV*SREPEA
Trigger: TGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTG...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGTCTGCGTGAGGATGTCCAGCACAGTTGACTCACCTTaGACATTGGGTACCCAGATG +
Preference number: 5 (lower is better)
Translates to: VSVSRCSRMDTVCVRMSSTVDSP*TLGTQM
Trigger: CATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT...GCTGGACATCCTCACGCAGACAGTGTCCATTCTGGAACAGCGACTGACACTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000214208.2
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp ACTGACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTTGGCCACACTTTGACTGTCTaGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: TDSRLLSLPGGTGKSIFGHTLTV*SSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTG...GCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000214540.2
CDS-3UTR CAA 90 bp CACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTCACAGCTTGACAGTCTaGTCATCACTGGCAGACACG +
Preference number: 5 (lower is better)
Translates to: HCFSLSSVSVSRCSRMDTHSLTV*SSLADT
Trigger: CGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTG...AGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGCTGAAGCAGTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR CAA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCATTCCCGGCTGGTCTaGTCCCACAGCTTGACAGTC +
Preference number: 5 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPHSRLV*SHSLTV
Trigger: GACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATG...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp AGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCCATTCCCGGCTGGTCTaGTCCCACAGCTTGACAGTC +
Preference number: 5 (lower is better)
Translates to: RWDPFIYLLKSPYKSLACHSRLV*SHSLTV
Trigger: GACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATG...GCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCACACCTTCACCGTGTaGTCCATGCCGGCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCHTFTV*SMPAAA
Trigger: TGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTG...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS TCA 90 bp ACCCAGTTGATGTGCTGGGTCAGGGAAAACAGGAATCTCTGGCGATaGGTTGACCACACTTTGACTGTCTTGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: TQLMCWVRENRNLWR*VDHTLTVLSSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCTGTTTTCCCTGACCCAGCACATCAACTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCGCCAAGTGCTTGGTGTaGAGACTGAAGTCCACACAG +
Preference number: 5 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPAKCLV*RLKSTQ
Trigger: CTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGC...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
CDS-3UTR CAA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCAGATGCGAACAGTCTaGTCTCGGGAGCCTGAGGCA +
Preference number: 5 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCQMRTV*SREPEA
Trigger: TGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTG...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp ACTGCTTCAGCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATGGACACTGGACTCACCTTTGACATaGGGTACCCAGATGCGAACA +
Preference number: 5 (lower is better)
Translates to: TASACLLLVSVAVPEWTLDSPLT*GTQMRT
Trigger: TGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTC...CAGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGCTGAAGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000214208.2
CDS-3UTR CAA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCACAGCTTGACAGTCTaGTCATCACTGGCAGACACG +
Preference number: 5 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPHSLTV*SSLADT
Trigger: CGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTG...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCATTCCCGGCTGGTCTaGTCCCACAGCTTGACAGTC +
Preference number: 5 (lower is better)
Translates to: WDPFIYLLKSPYKSLACCHSRLV*SHSLTV
Trigger: GACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATG...ACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGGCCAAGTGCTTGGTGTaGAGACTGAAGTCCACACAG +
Preference number: 5 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLAKCLV*RLKSTQ
Trigger: CTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGC...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR CAA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGCCAAGTGCTTGGTGTaGAGACTGAAGTCCACACAG +
Preference number: 5 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSAKCLV*RLKSTQ
Trigger: CTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGC...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
CDS-3UTR CAA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCACAGCTTGACAGTCTaGTCATCACTGGCAGACACG +
Preference number: 5 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLHSLTV*SSLADT
Trigger: CGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp CAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCACAGCTTGACAGTCTaGTCATCACTGGCAGACACG +
Preference number: 5 (lower is better)
Translates to: QVGSLYLFTQVPIQIPGLHSLTV*SSLADT
Trigger: CGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTG...CAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCACAGCTTGACAGTCTaGTCATCACTGGCAGACACG +
Preference number: 5 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPHSLTV*SSLADT
Trigger: CGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTG...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCTAAGGAAAGAGAAGTCAACTTAGAAACCAGTCGGGAGGCTGAAGGTGAGGTAGACTCACCTTTGACATaGGGTACCCAGATGCGAACA +
Preference number: 5 (lower is better)
Translates to: SKEREVNLETSREAEGEVDSPLT*GTQMRT
Trigger: TGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTC...TACCTCACCTTCAGCCTCCCGACTGGTTTCTAAGTTGACTTCTCTTTCCTTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS-3UTR CAA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCGACTCACCTTTGACATaGGGTACCCAGATGCGAACA +
Preference number: 5 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSDSPLT*GTQMRT
Trigger: TGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTC...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGACTCACCTTTGACATaGGGTACCCAGATGCGAACA +
Preference number: 5 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPDSPLT*GTQMRT
Trigger: TGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCCCACACTTTGACTGTCTaGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: SLYLFTQVPIQIPGLLSPHTLTV*SSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTG...GGGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTG +
Preference number: 5 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAVLSHS*TVLSSL
Trigger: CAGTGATGACAAGACTGTCAAGCTGTGGGACAAGAC...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTG +
Preference number: 5 (lower is better)
Translates to: GIPLFIYSSPHTNPWPAVVLSHS*TVLSSL
Trigger: CAGTGATGACAAGACTGTCAAGCTGTGGGACAAGAC...GACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTG +
Preference number: 5 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPVLSHS*TVLSSL
Trigger: CAGTGATGACAAGACTGTCAAGCTGTGGGACAAGAC...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTG +
Preference number: 5 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPVLSHS*TVLSSL
Trigger: CAGTGATGACAAGACTGTCAAGCTGTGGGACAAGAC...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGACTCACCTTTGACATaGGGTACCCAGATGCGAACA +
Preference number: 5 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPDSPLT*GTQMRT
Trigger: TGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTC...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR CAA 90 bp GGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCACAGTTGACTCACCTTaGACATTGGGTACCCAGATG +
Preference number: 5 (lower is better)
Translates to: GSLYLFTQVPIQIPGLLSTVDSP*TLGTQM
Trigger: CATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT...GGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGACAGTTGACTCACCTTaGACATTGGGTACCCAGATG +
Preference number: 5 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLTVDSP*TLGTQM
Trigger: CATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp ATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCACAGTTGACTCACCTTaGACATTGGGTACCCAGATG +
Preference number: 5 (lower is better)
Translates to: IPLFIYSSPHTNPWPAVPTVDSP*TLGTQM
Trigger: CATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT...GGGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTCACACTTTGACTGTCTaGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAHTLTV*SSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTG...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGTCCCCACACTTTGACTGTCTaGTCATCAGAGGCTGTCACA +
Preference number: 5 (lower is better)
Translates to: DPFIYLLKSPYKSLACCPHTLTV*SSEAVT
Trigger: TGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTG...GGGACAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp TCAGGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTG +
Preference number: 5 (lower is better)
Translates to: SGGIPLFIYSSPHTNPWPVLSHS*TVLSSL
Trigger: CAGTGATGACAAGACTGTCAAGCTGTGGGACAAGAC...AGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
CDS-3UTR CAA 90 bp GGTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTCAGGCAAATCCATTTTaGGCAGAGTTCCAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: GGIPLFIYSSPHTNPWPAQANPF*AEFQKS
Trigger: GCTCTTCTGGAACTCTGCCAAAAATGGATTTGCCTG...AGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp GTGGGATCCCTTTATTTATTTACTCAAGTCCCCATACAAATCCCTGGCCTGCTGCAGGCAAATCCATTTTaGGCAGAGTTCCAGAAGAGC +
Preference number: 5 (lower is better)
Translates to: VGSLYLFTQVPIQIPGLLQANPF*AEFQKS
Trigger: GCTCTTCTGGAACTCTGCCAAAAATGGATTTGCCTG...CAGCAGGCCAGGGATTTGTATGGGGACTTGAGTAAATAAATAAAGGGATCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000217213.2
CDS-3UTR CAA 90 bp AAATGGAAAGAAATTCTTGGCTCGTCTAAGGAAAGAGAAGTCAACTTAGAAACCACAGTTGACTCACCTTaGACATTGGGTACCCAGATG +
Preference number: 5 (lower is better)
Translates to: KWKEILGSSKEREVNLETTVDSP*TLGTQM
Trigger: CATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT...GGTTTCTAAGTTGACTTCTCTTTCCTTAGACGAGCCAAGAATTTCTTTCCATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS GCA 72 bp GAGTCCGCGCATCCCACACCTTCACCGTGTTGTCCATaGCGGCAGCAGCAATGCAGGTACCACTGGGGTGGA +
Preference number: 6 (lower is better)
Translates to: ESAHPTPSPCCP*RQQQCRYHWGG
Trigger: TCCACCCCAGTGGTACCTGCATTGCTGCTGCCGGCATGGACAACACGGTGAAGGTGTGGGATGCGCGGACTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS TCA 72 bp AGGCATGCTGATGGACTCCTGGGGCTCGCCTTGAACTaGCTCCAGACTCCTGTCTCTGCCTGCACTCCAGCA +
Preference number: 6 (lower is better)
Translates to: RHADGLLGLALN*LQTPVSACTPA
Trigger: TGCTGGAGTGCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCCAGGAGTCCATCAGCATGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000214483.2
CDS CAA 90 bp GAGTGGATACATTCCCGGCTGGTCTTGTCCCACAGCTTGACAGTCTaGTCATCACTGGCAGACACGATGAGCCGCCCGTCAGGGGAGAAC +
Preference number: 6 (lower is better)
Translates to: EWIHSRLVLSHSLTV*SSLADTMSRPSGEN
Trigger: GTTCTCCCCTGACGGGCGGCTCATCGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATGTATCCACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS TCA 72 bp GGTAGGCACGTGACTGGGGCTTCATGTGCCAGATCATaGGGGTTGAGTCCATGGAGCCACTGGCCAAGTGCT +
Preference number: 6 (lower is better)
Translates to: GRHVTGASCARS*GLSPWSHWPSA
Trigger: AGCACTTGGCCAGTGGCTCCATGGACTCAACCCTCATGATCTGGCACATGAAGCCCCAGTCACGTGCCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000216306.2
CDS CAA 72 bp CATTCCCGGCTGGTCTTGTCCCACAGCTTGACAGTCTaGTCATCACTGGCAGACACGATGAGCCGCCCGTCA +
Preference number: 6 (lower is better)
Translates to: HSRLVLSHSLTV*SSLADTMSRPS
Trigger: TGACGGGCGGCTCATCGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS TCA 72 bp GGGTACCCAGATGCGAACAGTCTTGTCTCGGGAGCCTaGGGCAAGAAGGTGTCCCGATGGGGAGAAATTCAC +
Preference number: 6 (lower is better)
Translates to: GYPDANSLVSGA*GKKVSRWGEIH
Trigger: GTGAATTTCTCCCCATCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTGGGTACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS GCA 72 bp GGGGCTCGCCTTGAACTGACTCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAATCCATTTTTGGCAGAG +
Preference number: 6 (lower is better)
Translates to: GARLELTPDSCL*LVGQANPFLAE
Trigger: CTCTGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072206.14
ENSMUST00000216228.2
ENSMUST00000217213.2
CDS GCA 72 bp GGGGCTCGCCTTGAACTGACTCCAGACTCCTGTCTCTaGCTGGTGGGACAGGCAAATCCATTTTTGGCTGCA +
Preference number: 6 (lower is better)
Translates to: GARLELTPDSCL*LVGQANPFLAA
Trigger: TGCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGTCAGTTCAAGGCGAGCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000216306.2
CDS CCA 72 bp GAGGCTGTCACAAGTGACTGGCCATCGCTGCAGAAGTaGACACTCCTCACTGTGGCCGTGTGTGCACGAAAT +
Preference number: 6 (lower is better)
Translates to: EAVTSDWPSLQK*TLLTVAVCARN
Trigger: ATTTCGTGCACACACGGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CAA 90 bp TGCCAGATCATGAGGGTTGAGTCCATGGAGCCACTGGCCAAGTGCTaGGTGTTGAGACTGAAGTCCACACAGGTGACTGCATCTCGGTGG +
Preference number: 6 (lower is better)
Translates to: CQIMRVESMEPLAKC*VLRLKSTQVTASRW
Trigger: CCACCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTCCATGGACTCAACCCTCATGATCTGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000216306.2
CDS TCA 72 bp GTCCACGTAGGTGACAAAACCGCCGTGCTCACAGTATaGGTGGATACATTCCCGGCTGGTCTTGTCCCACAG +
Preference number: 6 (lower is better)
Translates to: VHVGDKTAVLTV*VDTFPAGLVPQ
Trigger: CTGTGGGACAAGACCAGCCGGGAATGTATCCACTCATACTGTGAGCACGGCGGTTTTGTCACCTACGTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CAA 72 bp GTTGAGTCCATGGAGCCACTGGCCAAGTGCTTGGTGTaGAGACTGAAGTCCACACAGGTGACTGCATCTCGG +
Preference number: 6 (lower is better)
Translates to: VESMEPLAKCLV*RLKSTQVTASR
Trigger: CCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTCCATGGACTCAAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000216306.2
CDS CAA 90 bp ATCATGAGGGTTGAGTCCATGGAGCCACTGGCCAAGTGCTTGGTGTaGAGACTGAAGTCCACACAGGTGACTGCATCTCGGTGGCCCTTA +
Preference number: 6 (lower is better)
Translates to: IMRVESMEPLAKCLV*RLKSTQVTASRWPL
Trigger: TAAGGGCCACCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAACACCAAGCACTTGGCCAGTGGCTCCATGGACTCAACCCTCATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
CDS CAA 90 bp TCACAGTATGAGTGGATACATTCCCGGCTGGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTGGCAGACACGATGAGCCGCCCGTCA +
Preference number: 6 (lower is better)
Translates to: SQYEWIHSRLVLSHS*TVLSSLADTMSRPS
Trigger: TGACGGGCGGCTCATCGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATGTATCCACTCATACTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CCA 72 bp TTGAGACTGAAGTCCACACAGGTGACTGCATCTCGGTaGCCCTTAAAATGTCTCTCCAGTGAGGGGTCCTCC +
Preference number: 6 (lower is better)
Translates to: LRLKSTQVTASR*PLKCLSSEGSS
Trigger: GGAGGACCCCTCACTGGAGAGACATTTTAAGGGCCACCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000072206.14
CDS CCA 72 bp ACTGGCCATCGCTGCAGAAGTGGACACTCCTCACTGTaGCCGTGTGTGCACGAAATACAGTTGACTCACCTT +
Preference number: 6 (lower is better)
Translates to: TGHRCRSGHSSL*PCVHEIQLTHL
Trigger: AAGGTGAGTCAACTGTATTTCGTGCACACACGGCCACAGTGAGGAGTGTCCACTTCTGCAGCGATGGCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CCA 72 bp TTGAGACTGAAGTCCACACAGGTGACTGCATCTCGGTaGCCCTTAAAATGTCTCTCCAGTGAGGGGTCCTGG +
Preference number: 6 (lower is better)
Translates to: LRLKSTQVTASR*PLKCLSSEGSW
Trigger: CCAGGACCCCTCACTGGAGAGACATTTTAAGGGCCACCGAGATGCAGTCACCTGTGTGGACTTCAGTCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000191434.2
CDS CAA 72 bp GAGTGGATACATTCCCGGCTGGTCTTGTCCCACAGCTaGACAGTCTTGTCATCACTGGCAGACACGATGAGC +
Preference number: 6 (lower is better)
Translates to: EWIHSRLVLSHS*TVLSSLADTMS
Trigger: GCTCATCGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATGTATCCACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CAA 90 bp ACAGTTGACTCACCTTTGACATTGGGTACCCAGATGCGAACAGTCTaGTCTCGGGAGCCTGAGGCAAGAAGGTGTCCCGATGGGGAGAAA +
Preference number: 6 (lower is better)
Translates to: TVDSPLTLGTQMRTV*SREPEARRCPDGEK
Trigger: TTTCTCCCCATCGGGACACCTTCTTGCCTCAGGCTCCCGAGACAAGACTGTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CAA 90 bp AAACCGCCGTGCTCACAGTATGAGTGGATACATTCCCGGCTGGTCTaGTCCCACAGCTTGACAGTCTTGTCATCACTGGCAGACACGATG +
Preference number: 6 (lower is better)
Translates to: KPPCSQYEWIHSRLV*SHSLTVLSSLADTM
Trigger: CATCGTGTCTGCCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATGTATCCACTCATACTGTGAGCACGGCGGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CCA 72 bp TTGACTGTCTTGTCATCAGAGGCTGTCACAAGTGACTaGCCATCGCTGCAGAAGTGGACACTCCTCACTGTG +
Preference number: 6 (lower is better)
Translates to: LTVLSSEAVTSD*PSLQKWTLLTV
Trigger: CACAGTGAGGAGTGTCCACTTCTGCAGCGATGGCCAGTCACTTGTGACAGCCTCTGATGACAAGACAGTCAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CAA 90 bp ACTCCAGACTCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTaGGCTGCACTCCAGCATTCAAGAGCTGTAGCATTCCCTGAGAAG +
Preference number: 6 (lower is better)
Translates to: TPDSCLCLVGQANPF*AALQHSRAVAFPEK
Trigger: CTTCTCAGGGAATGCTACAGCTCTTGAATGCTGGAGTGCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGAGTCTGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216306.2
CDS TCA 72 bp ACTCCTCACTGTGGCCGTGTGTGCACGAAATACAGTTaGCTCACCTTTGACATTGGGTACCCAGATGCGAAC +
Preference number: 6 (lower is better)
Translates to: TPHCGRVCTKYS*LTFDIGYPDAN
Trigger: GTTCGCATCTGGGTACCCAATGTCAAAGGTGAGTCAACTGTATTTCGTGCACACACGGCCACAGTGAGGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CCA 72 bp GCCTGTCTTCTGTTAGTGTCAGTCGCTGTTCCAGAATaGACACTGTCAGAGTTCCAGAAGAGCTGGTTAGGG +
Preference number: 6 (lower is better)
Translates to: ACLLLVSVAVPE*TLSEFQKSWLG
Trigger: CCCTAACCAGCTCTTCTGGAACTCTGACAGTGTCCATTCTGGAACAGCGACTGACACTAACAGAAGACAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191434.2
CDS CAA 72 bp TGCTCACAGTATGAGTGGATACATTCCCGGCTGGTCTaGTCCCACAGCTTGACAGTCTTGTCATCACTGGCA +
Preference number: 6 (lower is better)
Translates to: CSQYEWIHSRLV*SHSLTVLSSLA
Trigger: TGCCAGTGATGACAAGACTGTCAAGCTGTGGGACAAGACCAGCCGGGAATGTATCCACTCATACTGTGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS CAA 72 bp TCCTGTCTCTGCCTGGTGGGACAGGCAAATCCATTTTaGGCTGCACTCCAGCATTCAAGAGCTGTAGCATTC +
Preference number: 6 (lower is better)
Translates to: SCLCLVGQANPF*AALQHSRAVAF
Trigger: GAATGCTACAGCTCTTGAATGCTGGAGTGCAGCCAAAAATGGATTTGCCTGTCCCACCAGGCAGAGACAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000216306.2
CDS TCA 72 bp CTGGGTCAGGGAAAACAGGAATCTCTGGCGATGAGTTaGCCACACTTTGACTGTCTTGTCATCAGAGGCTGT +
Preference number: 6 (lower is better)
Translates to: LGQGKQESLAMS*PHFDCLVIRGC
Trigger: ACAGCCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCTGTTTTCCCTGACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS TCA 72 bp ATGTGCTGGGTCAGGGAAAACAGGAATCTCTGGCGATaGGTTGACCACACTTTGACTGTCTTGTCATCAGAG +
Preference number: 6 (lower is better)
Translates to: MCWVRENRNLWR*VDHTLTVLSSE
Trigger: CTCTGATGACAAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCTGTTTTCCCTGACCCAGCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2
CDS TCA 72 bp AAAACAGGAATCTCTGGCGATGAGTTGACCACACTTTaGCTGTCTTGTCATCAGAGGCTGTCACAAGTGACT +
Preference number: 6 (lower is better)
Translates to: KTGISGDELTTL*LSCHQRLSQVT
Trigger: AGTCACTTGTGACAGCCTCTGATGACAAGACAGTCAAAGTGTGGTCAACTCATCGCCAGAGATTCCTGTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000072206.14
ENSMUST00000191434.2
ENSMUST00000214208.2
ENSMUST00000214483.2
ENSMUST00000214540.2
ENSMUST00000216228.2
ENSMUST00000216306.2
ENSMUST00000217213.2