Pregenerated sensors for PNRC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028675Ensembl transcript IDs: ENSMUST00000030436.12
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATTTAAGAAATGACCACTGGGACATGTGCTGCGCCGCTATCTTTTaGAAAATGCCCAAGATAGTTTGGATGACCCTAGACCATGAAACT | + |
|
Preference number: 1 (lower is better) Translates to: HLRNDHWDMCCAAIF*KMPKIVWMTLDHET Trigger: AGTTTCATGGTCTAGGGTCATCCAAACTATCTTGGGCATTTTTCAAAAGATAGCGGCGCAGCACATGTCCCAGTGGTCATTTCTTAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR CAA 90 bp | ATGACTTTAAATGTCACAAACACAACTCCCTACTTCAAACAGGCTTaGTATATAGGTGAGGCCAGGATCACTTTAGCAGCTTTGTGGGGT | + |
|
Preference number: 2 (lower is better) Translates to: MTLNVTNTTPYFKQA*YIGEARITLAALWG Trigger: ACCCCACAAAGCTGCTAAAGTGATCCTGGCCTCACCTATATACAAAGCCTGTTTGAAGTAGGGAGTTGTGTTTGTGACATTTAAAGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR-3UTR GCA 90 bp | GTGCTGCGCCGCTATCTTTTGAAAAATGCCCAAGATAGTTTGGATGACCCTAGACATGAAACTGAACTGTaGAACCTTGTATATGCTAAA | + |
|
Preference number: 2 (lower is better) Translates to: VLRRYLLKNAQDSLDDPRHETEL*NLVYAK Trigger: TTTAGCATATACAAGGTTGCACAGTTCAGTTTCATG...TCTAGGGTCATCCAAACTATCTTGGGCATTTTTCAAAAGATAGCGGCGCAGCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR-3UTR TCA 90 bp | TCTTTGGGTTTAAGATGGTTGGGGAGGAAGTTTTGTCCTACATCTTTATATCTCGCTAAATGCACTGTCTaGCTTCTTCAGAAGTTGTGT | + |
|
Preference number: 2 (lower is better) Translates to: SLGLRWLGRKFCPTSLYLAKCTV*LLQKLC Trigger: ACACAACTTCTGAAGAAGTCAGACAGTGCATTTAGC...GAGATATAAAGATGTAGGACAAAACTTCCTCCCCAACCATCTTAAACCCAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR-3UTR CAA 90 bp | TTGTATATAGGTGAGGCCAGGATCACTTTAGCAGCTTTGTGGGGTGCTAGTCAGCTGCGCCGCTATCTTTaGAAAAATGCCCAAGATAGT | + |
|
Preference number: 3 (lower is better) Translates to: LYIGEARITLAALWGASQLRRYL*KNAQDS Trigger: ACTATCTTGGGCATTTTTCAAAAGATAGCGGCGCAG...CTGACTAGCACCCCACAAAGCTGCTAAAGTGATCCTGGCCTCACCTATATACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR TCA 72 bp | AATGACCACTGGGACATGTGCTGCGCCGCTATCTTTTaGAAAATGCCCAAGATAGTTTGGATGACCCTAGAC | + |
|
Preference number: 3 (lower is better) Translates to: NDHWDMCCAAIF*KMPKIVWMTLD Trigger: GTCTAGGGTCATCCAAACTATCTTGGGCATTTTTCAAAAGATAGCGGCGCAGCACATGTCCCAGTGGTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR-3UTR CAA 90 bp | TTGTATATAGGTGAGGCCAGGATCACTTTAGCAGCTTTGTGGGGTGCTAGTCAGCTGAACTGTGCAACCTaGTATATGCTAAATGCACTG | + |
|
Preference number: 3 (lower is better) Translates to: LYIGEARITLAALWGASQLNCAT*YMLNAL Trigger: CAGTGCATTTAGCATATACAAGGTTGCACAGTTCAG...CTGACTAGCACCCCACAAAGCTGCTAAAGTGATCCTGGCCTCACCTATATACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR TCA 72 bp | TACATCTCTGGGTACTTATCCACTGCATTTAAGAAATaGCCACTGGGACATGTGCTGCGCCGCTATCTTTTG | + |
|
Preference number: 3 (lower is better) Translates to: YISGYLSTAFKK*PLGHVLRRYLL Trigger: CAAAAGATAGCGGCGCAGCACATGTCCCAGTGGTCATTTCTTAAATGCAGTGGATAAGTACCCAGAGATGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| 3UTR-3UTR CAA 90 bp | TCTTTGGGTTTAAGATGGTTGGGGAGGAAGTTTTGTCCTACATCTTTATATCTCATCACTTTAGCAGCTTaGTGGGGTGCTAGTCAGCAC | + |
|
Preference number: 3 (lower is better) Translates to: SLGLRWLGRKFCPTSLYLITLAA*WGASQH Trigger: GTGCTGACTAGCACCCCACAAAGCTGCTAAAGTGAT...GAGATATAAAGATGTAGGACAAAACTTCCTCCCCAACCATCTTAAACCCAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS-3UTR GCA 90 bp | GTGCTGCGCCGCTATCTTTTGAAAAATGCCCAAGATAGTTTGGATGACCCTAGAGGCCTGCCATGCTGCTaGTGCTGGATTGTACCCATG | + |
|
Preference number: 4 (lower is better) Translates to: VLRRYLLKNAQDSLDDPRGLPCC*CWIVPM Trigger: CATGGGTACAATCCAGCAGCAGCAGCATGGCAGGCC...TCTAGGGTCATCCAAACTATCTTGGGCATTTTTCAAAAGATAGCGGCGCAGCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS-3UTR GCA 90 bp | TTGTATATAGGTGAGGCCAGGATCACTTTAGCAGCTTTGTGGGGTGCTAGTCAGCCATTTTGCATGGCCTaGCATGCTGCTGCTGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LYIGEARITLAALWGASQPFCMA*HAAAAG Trigger: TCCAGCAGCAGCAGCATGGCAGGCCATGCAAAATGG...CTGACTAGCACCCCACAAAGCTGCTAAAGTGATCCTGGCCTCACCTATATACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS-3UTR GCA 90 bp | AAATTGCATCGACACTGTATAGTGTGTACAGCACATAAATCAGATGTCATGTGTTTGCATGGCCTGCCATaGTGCTGCTGCTGGATTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KLHRHCIVCTAHKSDVMCLHGLP*CCCWIV Trigger: TACAATCCAGCAGCAGCAGCATGGCAGGCCATGCAA...ACACATGACATCTGATTTATGTGCTGTACACACTATACAGTGTCGATGCAATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS-3UTR TCA 90 bp | TCTTTGGGTTTAAGATGGTTGGGGAGGAAGTTTTGTCCTACATCTTTATATCTCGTCTGGGAAGAATTCTaGTCCTTGCTCTTCTGTCTA | + |
|
Preference number: 4 (lower is better) Translates to: SLGLRWLGRKFCPTSLYLVWEEF*SLLFCL Trigger: TAGACAGAAGAGCAAGGATCAGAATTCTTCCCAGAC...GAGATATAAAGATGTAGGACAAAACTTCCTCCCCAACCATCTTAAACCCAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS-3UTR CAA 90 bp | TTGTATATAGGTGAGGCCAGGATCACTTTAGCAGCTTTGTGGGGTGCTAGTCAGGCATTCCAGTTGGAGTaGTTAGAAAGGCTCTTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: LYIGEARITLAALWGASQAFQLE*LERLLV Trigger: GACCAAGAGCCTTTCTAACAACTCCAACTGGAATGC...CTGACTAGCACCCCACAAAGCTGCTAAAGTGATCCTGGCCTCACCTATATACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS-3UTR CAA 90 bp | GTGCTGCGCCGCTATCTTTTGAAAAATGCCCAAGATAGTTTGGATGACCCTAGATTGTTAGAAAGGCTCTaGGTCTTTCCCCCATTTTGC | + |
|
Preference number: 5 (lower is better) Translates to: VLRRYLLKNAQDSLDDPRLLERL*VFPPFC Trigger: GCAAAATGGGGGAAAGACCAAGAGCCTTTCTAACAA...TCTAGGGTCATCCAAACTATCTTGGGCATTTTTCAAAAGATAGCGGCGCAGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||
| CDS CAA 72 bp | AAAAGCAAGCTAGGACTTGATAAACCAGCATTCCAGTaGGAGTTGTTAGAAAGGCTCTTGGTCTTTCCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: KSKLGLDKPAFQ*ELLERLLVFPP Trigger: TGGGGGAAAGACCAAGAGCCTTTCTAACAACTCCAACTGGAATGCTGGTTTATCAAGTCCTAGCTTGCTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030436.12 |
||