Pregenerated sensors for PNRC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040128Ensembl transcript IDs: ENSMUST00000049357.10
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCTGCAGGGCAAAATACATACTTTCATAACAAAACTATAATGTCCTCTCAAGTAAGGGCAAGTTTTCACTaGTGTATCCGTTTCCTTTCG | + |
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Preference number: 2 (lower is better) Translates to: AAGQNTYFHNKTIMSSQVRASFH*CIRFLS Trigger: CGAAAGGAAACGGATACAGCAGTGAAAACTTGCCCT...TACTTGAGAGGACATTATAGTTTTGTTATGAAAGTATGTATTTTGCCCTGCAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| 3UTR CCA 72 bp | CACTGCTGTATCCGTTTCCTTTCGAGTCCAAAGGTCTaGGGAAATCGATGTTTACCACACACTGCAGACGCA | + |
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Preference number: 3 (lower is better) Translates to: HCCIRFLSSPKV*GNRCLPHTADA Trigger: TGCGTCTGCAGTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAAAGGAAACGGATACAGCAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | TTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACACTGCAGACGCAAGCGGTGCTGCTGGAACTaGTGGAAGCGGCTGGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FESKGLGKSMFTTHCRRKRCCWN*WKRLGS Trigger: GCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCG...CTTGCGTCTGCAGTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | TTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACACTGCAGACGCAAGCTCGGCCGGTGCTGCTaGAACTGGTGGAAGCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FESKGLGKSMFTTHCRRKLGRCC*NWWKRL Trigger: CAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAG...CTTGCGTCTGCAGTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR GCA 90 bp | GTATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACAAGGCTCGGCCGGTGCTaGTGGAACTGGTGGAAGCGG | + |
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Preference number: 4 (lower is better) Translates to: VSVSFRVQRSGEIDVYHTRLGRC*WNWWKR Trigger: CCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCT...TGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAAAGGAAACGGATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | ATAAAATATAATACAAGCTGCTTGTGTGACTTAAGCTCATTGTGTCGGATGCTGTCTTCCGCCGCTTCTTaGGCGCCGCCCGCGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: IKYNTSCLCDLSSLCRMLSSAAS*APPAGQ Trigger: CTGCCCCGCGGGCGGCGCCCAAGAAGCGGCGGAAGA...CAGCATCCGACACAATGAGCTTAAGTCACACAAGCAGCTTGTATTATATTTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | CAGGGCAAGTTTTCACTGCTGTATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGTGCACAAGCTGGCTGTaGGGAAGGGCAATTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: QGKFSLLYPFPFESKGLGCTSWL*GRAIFS Trigger: GGAGAAAATTGCCCTTCCCCACAGCCAGCTTGTGCA...CCCCAGACCTTTGGACTCGAAAGGAAACGGATACAGCAGTGAAAACTTGCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR TCA 90 bp | TATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACACGTACTTCCCATCCAGTaGCTCGGAGGCTTTGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: YPFPFESKGLGKSMFTTHVLPIQ*LGGFGR Trigger: CCTCCCAAAGCCTCCGAGTCACTGGATGGGAAGTAC...GTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAAAGGAAACGGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR GCA 90 bp | CTGCAACAGGGCAAGTTTTCACTGCTGTATCCGTTTCCTTTCGAGTCCAAAGGTAGGAGCGTTTTCAAGTaGACTGCCATCAGCTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: LQQGKFSLLYPFPFESKGRSVFK*TAISSR Trigger: CCGGGAGCTGATGGCAGTGCACTTGAAAACGCTCCT...ACCTTTGGACTCGAAAGGAAACGGATACAGCAGTGAAAACTTGCCCTGTTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | CAGGGCAAGTTTTCACTGCTGTATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGATACCATGCACAAGCTaGCTGTGGGGAAGGGCAATT | + |
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Preference number: 4 (lower is better) Translates to: QGKFSLLYPFPFESKGLGIPCTS*LWGRAI Trigger: AATTGCCCTTCCCCACAGCCAGCTTGTGCATGGTAT...CCCCAGACCTTTGGACTCGAAAGGAAACGGATACAGCAGTGAAAACTTGCCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR TCA 90 bp | TATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACACGGGAAGGTGGGTCACTaGACTTTGCTCCGGCGTAAT | + |
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Preference number: 4 (lower is better) Translates to: YPFPFESKGLGKSMFTTHGKVGH*TLLRRN Trigger: ATTACGCCGGAGCAAAGTTCAGTGACCCACCTTCCC...GTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAAAGGAAACGGATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR GCA 90 bp | CAGGGCAAGTTTTCACTGCTGTATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGGAGGAAGCAGAATCCTaGCAAAAGTCACTTTCATTC | + |
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Preference number: 4 (lower is better) Translates to: QGKFSLLYPFPFESKGLGEEAES*QKSLSF Trigger: GAATGAAAGTGACTTTTGGCAGGATTCTGCTTCCTC...CCCCAGACCTTTGGACTCGAAAGGAAACGGATACAGCAGTGAAAACTTGCCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | TATCCAGAAATGAAGTTTGGTAAAAACGGGAAGCTTTCTAGGAATTGCAGATTATGTGGAGCAGGGCAGTaGCCGCCAGACCTCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: YPEMKFGKNGKLSRNCRLCGAGQ*PPDLAP Trigger: AGGAGCGAGGTCTGGCGGCCACTGCCCTGCTCCACA...TAATCTGCAATTCCTAGAAAGCTTCCCGTTTTTACCAAACTTCATTTCTGGATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR GCA 90 bp | TATCCAGAAATGAAGTTTGGTAAAAACGGGAAGCTTTCTAGGAATTGCAGATTATCCAGGCTCGGCCGGTaGTGCTGGAACTGGTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: YPEMKFGKNGKLSRNCRLSRLGR*CWNWWK Trigger: CTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGA...TAATCTGCAATTCCTAGAAAGCTTCCCGTTTTTACCAAACTTCATTTCTGGATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | GCTGCAGGGCAAAATACATACTTTCATAACAAAACTATAATGTCCTCTCAAGTAAACCTCCTTCGCGAGTaGGGGCTGTCTGTGGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: AAGQNTYFHNKTIMSSQVNLLRE*GLSVEQ Trigger: CTGCTCCACAGACAGCCCCCACTCGCGAAGGAGGTT...TACTTGAGAGGACATTATAGTTTTGTTATGAAAGTATGTATTTTGCCCTGCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR GCA 90 bp | AACACCACCACAGCTGCAGGGCAAAATACATACTTTCATAACAAAACTATAATGCGTTTTCAAGTGCACTaGCATCAGCTCCCGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: NTTTAAGQNTYFHNKTIMRFQVH*HQLPAL Trigger: CAGAGCCGGGAGCTGATGGCAGTGCACTTGAAAACG...CATTATAGTTTTGTTATGAAAGTATGTATTTTGCCCTGCAGCTGTGGTGGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | TCCATAATGGCAATATACCAATATCCAGAAATGAAGTTTGGTAAAAACGGGAAGAGCGAGATCTCGCTGTaGGACGGAGACGACGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: SIMAIYQYPEMKFGKNGKSEISL*DGDDGH Trigger: ATGACCGTCGTCTCCGTCCCACAGCGAGATCTCGCT...CTTCCCGTTTTTACCAAACTTCATTTCTGGATATTGGTATATTGCCATTATGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CCA 90 bp | TTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACACTGCAGACGCAAGCTGTCTGTTTATCTTTaGTTGTTCACACAAGTGTAT | + |
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Preference number: 4 (lower is better) Translates to: FESKGLGKSMFTTHCRRKLSVYL*LFTQVY Trigger: ATACACTTGTGTGAACAACCAAAGATAAACAGACAG...CTTGCGTCTGCAGTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| 3UTR CAA 72 bp | AAATATAATACAAGCTGCTTGTGTGACTTAAGCTCATaGTGTCGGATGCTGCAACAGGGCAAGTTTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: KYNTSCLCDLSS*CRMLQQGKFSL Trigger: CAGTGAAAACTTGCCCTGTTGCAGCATCCGACACAATGAGCTTAAGTCACACAAGCAGCTTGTATTATATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 90 bp | GGCCCCGGCGCCGGGCTGCGACCACCCTCCAGGCTCGGCCGGTGCTaGTGGAACTGGTGGAAGCGGCTGGGCAGCTGCCCGGCCGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: GPGAGLRPPSRLGRC*WNWWKRLGSCPAGL Trigger: CAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 90 bp | CCCGGCGCCGGGCTGCGACCACCCTCCAGGCTCGGCCGGTGCTGCTaGAACTGGTGGAAGCGGCTGGGCAGCTGCCCGGCCGGGCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: PGAGLRPPSRLGRCC*NWWKRLGSCPAGLA Trigger: GGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 90 bp | GCCGGGCTGCGACCACCCTCCAGGCTCGGCCGGTGCTGCTGGAACTaGTGGAAGCGGCTGGGCAGCTGCCCGGCCGGGCTGGCCCGCACC | + |
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Preference number: 5 (lower is better) Translates to: AGLRPPSRLGRCCWN*WKRLGSCPAGLART Trigger: GGTGCGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 90 bp | ATTGGCCCCGGCGCCGGGCTGCGACCACCCTCCAGGCTCGGCCGGTaGTGCTGGAACTGGTGGAAGCGGCTGGGCAGCTGCCCGGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: IGPGAGLRPPSRLGR*CWNWWKRLGSCPAG Trigger: CCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCAAT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 90 bp | GAGCAGGGCAGTGGCCGCCAGACCTCGCTCCTCCTGCGCGACGATTaGCCCCGGCGCCGGGCTGCGACCACCCTCCAGGCTCGGCCGGTG | + |
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Preference number: 5 (lower is better) Translates to: EQGSGRQTSLLLRDD*PRRRAATTLQARPV Trigger: CACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACTGCCCTGCTC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 90 bp | GGGCTGCGACCACCCTCCAGGCTCGGCCGGTGCTGCTGGAACTGGTaGAAGCGGCTGGGCAGCTGCCCGGCCGGGCTGGCCCGCACCTTT | + |
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Preference number: 5 (lower is better) Translates to: GLRPPSRLGRCCWNW*KRLGSCPAGLARTF Trigger: AAAGGTGCGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 90 bp | CCAGACCTCGCTCCTCCTGCGCGACGATTGGCCCCGGCGCCGGGCTaGGACCACCCTCCAGGCTCGGCCGGTGCTGCTGGAACTGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: PDLAPPARRLAPAPG*DHPPGSAGAAGTGG Trigger: TCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGCGAGGTCTGG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 90 bp | CACCCTCCAGGCTCGGCCGGTGCTGCTGGAACTGGTGGAAGCGGCTaGGCAGCTGCCCGGCCGGGCTGGCCCGCACCTTTTTCTTCCGCC | + |
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Preference number: 5 (lower is better) Translates to: HPPGSAGAAGTGGSG*AAARPGWPAPFSSA Trigger: GGCGGAAGAAAAAGGTGCGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 90 bp | AGGCTCGGCCGGTGCTGCTGGAACTGGTGGAAGCGGCTGGGCAGCTaGCCGGCCGGGCTGGCCCGCACCTTTTTCTTCCGCCGCTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RLGRCCWNWWKRLGS*PAGLARTFFFRRFL Trigger: CAAGAAGCGGCGGAAGAAAAAGGTGCGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS TCA 90 bp | AGCTCCCGGCTCTGGCTGGGGTTCTCGGCGGTACTTCCCATCCAGTaGCTCGGAGGCTTTGGGAGGACACTAGGGGAAGGTGGGTCACTG | + |
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Preference number: 5 (lower is better) Translates to: SSRLWLGFSAVLPIQ*LGGFGRTLGEGGSL Trigger: CAGTGACCCACCTTCCCCTAGTGTCCTCCCAAAGCCTCCGAGTCACTGGATGGGAAGTACCGCCGAGAACCCCAGCCAGAGCCGGGAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CAA 90 bp | TTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACACTGCAGACGCAAGTTGGTTAGTGGCAAGTaGTATTTGCTTTTCTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: FESKGLGKSMFTTHCRRKLVSGK*YLLFCL Trigger: CAGACAGAAAAGCAAATACAACTTGCCACTAACCAA...CTTGCGTCTGCAGTGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CAA 90 bp | GTATCCGTTTCCTTTCGAGTCCAAAGGTCTGGGGAAATCGATGTTTACCACACATTTGCAGAGGTGATCTaGGTTAGTGGCAAGTTGTAT | + |
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Preference number: 5 (lower is better) Translates to: VSVSFRVQRSGEIDVYHTFAEVI*VSGKLY Trigger: ATACAACTTGCCACTAACCAAGATCACCTCTGCAAA...TGTGTGGTAAACATCGATTTCCCCAGACCTTTGGACTCGAAAGGAAACGGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CAA 90 bp | TCCATAATGGCAATATACCAATATCCAGAAATGAAGTTTGGTAAAAACGGGAAGTCTGTTTATCTTTGGTaGTTCACACAAGTGTATACC | + |
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Preference number: 5 (lower is better) Translates to: SIMAIYQYPEMKFGKNGKSVYLW*FTQVYT Trigger: GGTATACACTTGTGTGAACAACCAAAGATAAACAGA...CTTCCCGTTTTTACCAAACTTCATTTCTGGATATTGGTATATTGCCATTATGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS-3UTR CAA 90 bp | TCCATAATGGCAATATACCAATATCCAGAAATGAAGTTTGGTAAAAACGGGAAGAGTGGCAAGTTGTATTaGCTTTTCTGTCTGTTTATC | + |
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Preference number: 5 (lower is better) Translates to: SIMAIYQYPEMKFGKNGKSGKLY*LFCLFI Trigger: GATAAACAGACAGAAAAGCAAATACAACTTGCCACT...CTTCCCGTTTTTACCAAACTTCATTTCTGGATATTGGTATATTGCCATTATGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 72 bp | GCTCCTCCTGCGCGACGATTGGCCCCGGCGCCGGGCTaGGACCACCCTCCAGGCTCGGCCGGTGCTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: APPARRLAPAPG*DHPPGSAGAAG Trigger: TCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CAA 72 bp | CAGTGGCCGCCAGACCTCGCTCCTCCTGCGCGACGATaGGCCCCGGCGCCGGGCTGCGACCACCCTCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: QWPPDLAPPARR*APAPGCDHPPG Trigger: GCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACTG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 72 bp | GCCGGGCTGCGACCACCCTCCAGGCTCGGCCGGTGCTaGTGGAACTGGTGGAAGCGGCTGGGCAGCTGCCCG | + |
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Preference number: 6 (lower is better) Translates to: AGLRPPSRLGRC*WNWWKRLGSCP Trigger: CGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCCGGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 72 bp | TGGAGCAGGGCAGTGGCCGCCAGACCTCGCTCCTCCTaGGCGACGATTGGCCCCGGCGCCGGGCTGCGACCA | + |
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Preference number: 6 (lower is better) Translates to: WSRAVAARPRSS*ATIGPGAGLRP Trigger: TGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACTGCCCTGCTCCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 72 bp | CGACCACCCTCCAGGCTCGGCCGGTGCTGCTGGAACTaGTGGAAGCGGCTGGGCAGCTGCCCGGCCGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RPPSRLGRCCWN*WKRLGSCPAGL Trigger: CAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 72 bp | GGGCTGCGACCACCCTCCAGGCTCGGCCGGTGCTGCTaGAACTGGTGGAAGCGGCTGGGCAGCTGCCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: GLRPPSRLGRCC*NWWKRLGSCPA Trigger: GGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCGGCCGAGCCTGGAGGGTGGTCGCAGCCC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 72 bp | AGTGGCCGCCAGACCTCGCTCCTCCTGCGCGACGATTaGCCCCGGCGCCGGGCTGCGACCACCCTCCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: SGRQTSLLLRDD*PRRRAATTLQA Trigger: AGCCTGGAGGGTGGTCGCAGCCCGGCGCCGGGGCCAATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 72 bp | CGGTGCTGCTGGAACTGGTGGAAGCGGCTGGGCAGCTaGCCGGCCGGGCTGGCCCGCACCTTTTTCTTCCGC | + |
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Preference number: 6 (lower is better) Translates to: RCCWNWWKRLGS*PAGLARTFFFR Trigger: GCGGAAGAAAAAGGTGCGGGCCAGCCCGGCCGGGCAGCTGCCCAGCCGCTTCCACCAGTTCCAGCAGCACCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 72 bp | CCTTCGCGAGTGGGGGCTGTCTGTGGAGCAGGGCAGTaGCCGCCAGACCTCGCTCCTCCTGCGCGACGATTG | + |
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Preference number: 6 (lower is better) Translates to: PSRVGAVCGAGQ*PPDLAPPARRL Trigger: CAATCGTCGCGCAGGAGGAGCGAGGTCTGGCGGCCACTGCCCTGCTCCACAGACAGCCCCCACTCGCGAAGG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS GCA 72 bp | CTAGGTCTGCACCTTGAGGAGCGTTTTCAAGTGCACTaGCATCAGCTCCCGGCTCTGGCTGGGGTTCTCGGC | + |
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Preference number: 6 (lower is better) Translates to: LGLHLEERFQVH*HQLPALAGVLG Trigger: GCCGAGAACCCCAGCCAGAGCCGGGAGCTGATGGCAGTGCACTTGAAAACGCTCCTCAAGGTGCAGACCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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| CDS CCA 72 bp | TTTTCAAGTGCACTGCCATCAGCTCCCGGCTCTGGCTaGGGTTCTCGGCGGTACTTCCCATCCAGTGACTCG | + |
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Preference number: 6 (lower is better) Translates to: FSSALPSAPGSG*GSRRYFPSSDS Trigger: CGAGTCACTGGATGGGAAGTACCGCCGAGAACCCCAGCCAGAGCCGGGAGCTGATGGCAGTGCACTTGAAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049357.10 |
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