Pregenerated sensors for PNPT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020464Ensembl transcript IDs: ENSMUST00000020756.9
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GGATCCGGTGCTGCTCCACAACGCTCGCATCTGCAAATAGCTGAGTaGCCGATTCCGCCCGGGCCGGCCGAGGGGGCCGCAGCCCAGCGG | + |
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Preference number: 5 (lower is better) Translates to: GSGAAPQRSHLQIAE*PIPPGPAEGAAAQR Trigger: CCGCTGGGCTGCGGCCCCCTCGGCCGGCCCGGGCGGAATCGGGCACTCAGCTATTTGCAGATGCGAGCGTTGTGGAGCAGCACCGGATCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS GCA 90 bp | GGAGCCAATCTCCCTTCTAAGGTAGTTTGTGGGGATTCTGCCTGCTaGAGCAGCCTTCTGTCGGTAGTCCACCACCAACGGCATGAATTG | + |
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Preference number: 5 (lower is better) Translates to: GANLPSKVVCGDSAC*SSLLSVVHHQRHEL Trigger: CAATTCATGCCGTTGGTGGTGGACTACCGACAGAAGGCTGCTGCAGCAGGCAGAATCCCCACAAACTACCTTAGAAGGGAGATTGGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS TCA 90 bp | AGCTTTTGTTTTGCTGACTGCCGTGACCATTACTGCAGTATCGCCTaGCTGTATCACAGCACAGCCATCAGCAAATCTTGCCAGTTTCCC | + |
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Preference number: 5 (lower is better) Translates to: SFCFADCRDHYCSIA*LYHSTAISKSCQFP Trigger: GGGAAACTGGCAAGATTTGCTGATGGCTGTGCTGTGATACAGTCAGGCGATACTGCAGTAATGGTCACGGCAGTCAGCAAAACAAAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS TCA 90 bp | AGGGCAGTGGGATGTTTAATCTTTCGTTGGTCAAGTTGTGAATTATaGAGCAGCACTGCAGTCATGTTTGGATACAGTTTTACCATCACT | + |
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Preference number: 5 (lower is better) Translates to: RAVGCLIFRWSSCEL*SSTAVMFGYSFTIT Trigger: AGTGATGGTAAAACTGTATCCAAACATGACTGCAGTGCTGCTTCATAATTCACAACTTGACCAACGAAAGATTAAACATCCCACTGCCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS CCA 90 bp | TTGTTCATTATCTGCAGTATCTCCTTCTTTGCCACTGACGCTTGTTaGATGGCTTCCATTATAATTTTAATTGGTACTCCAGGTAACTTA | + |
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Preference number: 5 (lower is better) Translates to: LFIICSISFFATDAC*MASIIILIGTPGNL Trigger: TAAGTTACCTGGAGTACCAATTAAAATTATAATGGAAGCCATCCAACAAGCGTCAGTGGCAAAGAAGGAGATACTGCAGATAATGAACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS GCA 72 bp | GCTGCTCCACAACGCTCGCATCTGCAAATAGCTGAGTaGCCGATTCCGCCCGGGCCGGCCGAGGGGGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: AAPQRSHLQIAE*PIPPGPAEGAA Trigger: TGCGGCCCCCTCGGCCGGCCCGGGCGGAATCGGGCACTCAGCTATTTGCAGATGCGAGCGTTGTGGAGCAGC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS GCA 72 bp | CTCCCTTCTAAGGTAGTTTGTGGGGATTCTGCCTGCTaGAGCAGCCTTCTGTCGGTAGTCCACCACCAACGG | + |
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Preference number: 6 (lower is better) Translates to: LPSKVVCGDSAC*SSLLSVVHHQR Trigger: CCGTTGGTGGTGGACTACCGACAGAAGGCTGCTGCAGCAGGCAGAATCCCCACAAACTACCTTAGAAGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS CCA 72 bp | CTAATTTTCTGTGTCCCAGGTCTACAGTCACCGCTCTaGATCCGGTGCTGCTCCACAACGCTCGCATCTGCA | + |
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Preference number: 6 (lower is better) Translates to: LIFCVPGLQSPL*IRCCSTTLASA Trigger: TGCAGATGCGAGCGTTGTGGAGCAGCACCGGATCCAGAGCGGTGACTGTAGACCTGGGACACAGAAAATTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS CAA 72 bp | AGCCTTCTGTCGGTAGTCCACCACCAACGGCATGAATaGGGAAGGCGAAGCTTTTGTTTTGCTGACTGCCGT | + |
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Preference number: 6 (lower is better) Translates to: SLLSVVHHQRHE*GRRSFCFADCR Trigger: ACGGCAGTCAGCAAAACAAAAGCTTCGCCTTCCCAATTCATGCCGTTGGTGGTGGACTACCGACAGAAGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS TCA 72 bp | TTTGCTGACTGCCGTGACCATTACTGCAGTATCGCCTaGCTGTATCACAGCACAGCCATCAGCAAATCTTGC | + |
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Preference number: 6 (lower is better) Translates to: FADCRDHYCSIA*LYHSTAISKSC Trigger: GCAAGATTTGCTGATGGCTGTGCTGTGATACAGTCAGGCGATACTGCAGTAATGGTCACGGCAGTCAGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS CAA 72 bp | ACCAACGGCATGAATTGGGAAGGCGAAGCTTTTGTTTaGCTGACTGCCGTGACCATTACTGCAGTATCGCCT | + |
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Preference number: 6 (lower is better) Translates to: TNGMNWEGEAFV*LTAVTITAVSP Trigger: AGGCGATACTGCAGTAATGGTCACGGCAGTCAGCAAAACAAAAGCTTCGCCTTCCCAATTCATGCCGTTGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS GCA 72 bp | TCGATTCACACCAGTAACTTTGCCGGTTTCATTGGTTaGATAAGGAGGGAACTCATAGTGCAGCATGAAATT | + |
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Preference number: 6 (lower is better) Translates to: SIHTSNFAGFIG*IRRELIVQHEI Trigger: AATTTCATGCTGCACTATGAGTTCCCTCCTTATGCAACCAATGAAACCGGCAAAGTTACTGGTGTGAATCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS TCA 72 bp | ATCATAAAAATAGCCGGCTGGAAAGAGAGGGCGAATTaGACGATCTATTACTCGACTTGTAAGAACCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: IIKIAGWKERAN*TIYYSTCKNLS Trigger: AGAGAGGTTCTTACAAGTCGAGTAATAGATCGTTCAATTCGCCCTCTCTTTCCAGCCGGCTATTTTTATGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS CCA 72 bp | ATCTGCAGTATCTCCTTCTTTGCCACTGACGCTTGTTaGATGGCTTCCATTATAATTTTAATTGGTACTCCA | + |
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Preference number: 6 (lower is better) Translates to: ICSISFFATDAC*MASIIILIGTP Trigger: TGGAGTACCAATTAAAATTATAATGGAAGCCATCCAACAAGCGTCAGTGGCAAAGAAGGAGATACTGCAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS TCA 72 bp | GGATGTTTAATCTTTCGTTGGTCAAGTTGTGAATTATaGAGCAGCACTGCAGTCATGTTTGGATACAGTTTT | + |
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Preference number: 6 (lower is better) Translates to: GCLIFRWSSCEL*SSTAVMFGYSF Trigger: AAAACTGTATCCAAACATGACTGCAGTGCTGCTTCATAATTCACAACTTGACCAACGAAAGATTAAACATCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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| CDS TCA 72 bp | TTTGTTCATTATCTGCAGTATCTCCTTCTTTGCCACTaGCGCTTGTTGGATGGCTTCCATTATAATTTTAAT | + |
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Preference number: 6 (lower is better) Translates to: FVHYLQYLLLCH*RLLDGFHYNFN Trigger: ATTAAAATTATAATGGAAGCCATCCAACAAGCGTCAGTGGCAAAGAAGGAGATACTGCAGATAATGAACAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020756.9 |
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