Pregenerated sensors for PNPO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018659Ensembl transcript IDs: ENSMUST00000018803.12, ENSMUST00000107629.2
Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCTGGCCGATGGCCACAGGGTCAATGTCCTTCCTGGACCCAGGCTaGAGTGGGGGATCAACACAGGACAAGGTTGCCTCGGGAGGAGCC | + |
|
Preference number: 1 (lower is better) Translates to: TWPMATGSMSFLDPG*SGGSTQDKVASGGA Trigger: GGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATCCCCCACTTCAGCCTGGGTCCAGGAAGGACATTGACCCTGTGGCCATCGGCCAGGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 90 bp | GCCGATGGCCACAGGGTCAATGTCCTTCCTGGACCCAGGCTGAAGTaGGGGATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGT | + |
|
Preference number: 1 (lower is better) Translates to: ADGHRVNVLPGPRLK*GINTGQGCLGRSLC Trigger: ACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATCCCCCACTTCAGCCTGGGTCCAGGAAGGACATTGACCCTGTGGCCATCGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR TCA 90 bp | AGGTCCTACTTACCTCCCGGTCAGGGATCACAGAACTCTGGCGACTaGCCACAGCCCCAATCTGGCTGCTCTTGGGGCGGGAATGGAAGT | + |
|
Preference number: 1 (lower is better) Translates to: RSYLPPGQGSQNSGD*PQPQSGCSWGGNGS Trigger: ACTTCCATTCCCGCCCCAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGGTAAGTAGGACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR CCA 90 bp | TATACAGAGGTCCTACTTACCTCCCGGTCAGGGATCACAGAACTCTaGCGACTGACCACAGCCCCAATCTGGCTGCTCTTGGGGCGGGAA | + |
|
Preference number: 1 (lower is better) Translates to: YTEVLLTSRSGITEL*RLTTAPIWLLLGRE Trigger: TTCCCGCCCCAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGGTAAGTAGGACCTCTGTATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR CCA 90 bp | CCCTGGCATCTCCTGGAGACAGCCTCTGGGGATGAACTCAGGGCCTaGCTCATGAAGAGGATTATACAGAGGTCCTACTTACCTCCCGGT | + |
|
Preference number: 1 (lower is better) Translates to: PWHLLETASGDELRA*LMKRIIQRSYLPPG Trigger: ACCGGGAGGTAAGTAGGACCTCTGTATAATCCTCTTCATGAGCCAGGCCCTGAGTTCATCCCCAGAGGCTGTCTCCAGGAGATGCCAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR TCA 90 bp | ATCTCCTGGAGACAGCCTCTGGGGATGAACTCAGGGCCTGGCTCATaGAGAGGATTATACAGAGGTCCTACTTACCTCCCGGTCAGGGAT | + |
|
Preference number: 1 (lower is better) Translates to: ISWRQPLGMNSGPGS*RGLYRGPTYLPVRD Trigger: ATCCCTGACCGGGAGGTAAGTAGGACCTCTGTATAATCCTCTTCATGAGCCAGGCCCTGAGTTCATCCCCAGAGGCTGTCTCCAGGAGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR TCA 90 bp | CAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTaGAGCACACAGCCACAAAGTCAAAACAAGGCAAGTGTGTCCAGG | + |
|
Preference number: 1 (lower is better) Translates to: QDKVASGGAFVSDRG*STQPQSQNKASVSR Trigger: CCTGGACACACTTGCCTTGTTTTGACTTTGTGGCTGTGTGCTTCAGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR GCA 90 bp | GCCTGGGCTGGCTCCTTTCCATGGCTGGGAAGCCTTTTGTCTATCTaGAGCCTGATTAATTTATTACTGGAAACAGCTCCCAAGCCAGGC | + |
|
Preference number: 1 (lower is better) Translates to: AWAGSFPWLGSLLSI*SLINLLLETAPKPG Trigger: GCCTGGCTTGGGAGCTGTTTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAGCCCAGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR TCA 90 bp | CTGGCTCCTTTCCATGGCTGGGAAGCCTTTTGTCTATCTGCAGCCTaGTTAATTTATTACTGGAAACAGCTCCCAAGCCAGGCTTCCCCC | + |
|
Preference number: 1 (lower is better) Translates to: LAPFHGWEAFCLSAA*LIYYWKQLPSQASP Trigger: GGGGGAAGCCTGGCTTGGGAGCTGTTTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 90 bp | GAACATATAATGATTTGTCTGAGTCACAGCAAACATGGCCTGGGCTaGCTCCTTTCCATGGCTGGGAAGCCTTTTGTCTATCTGCAGCCT | + |
|
Preference number: 1 (lower is better) Translates to: EHIMICLSHSKHGLG*LLSMAGKPFVYLQP Trigger: AGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAGCCCAGGCCATGTTTGCTGTGACTCAGACAAATCATTATATGTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 90 bp | AGGCCAACCAGAACATATAATGATTTGTCTGAGTCACAGCAAACATaGCCTGGGCTGGCTCCTTTCCATGGCTGGGAAGCCTTTTGTCTA | + |
|
Preference number: 1 (lower is better) Translates to: RPTRTYNDLSESQQT*PGLAPFHGWEAFCL Trigger: TAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAGCCCAGGCCATGTTTGCTGTGACTCAGACAAATCATTATATGTTCTGGTTGGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | TTGACAAGACCCTGGCATCTCCTGGAGACAGCCTCTGGGGATGAACTCAGGGCCGGGATCACAGAACTCTaGCGACTGACCACAGCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: LTRPWHLLETASGDELRAGITEL*RLTTAP Trigger: TGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCC...GGCCCTGAGTTCATCCCCAGAGGCTGTCTCCAGGAGATGCCAGGGTCTTGTCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR-3UTR GCA 90 bp | TCCTTTTCTGCTAGTTTGACAAGACCCTGGCATCTCCTGGAGACAGCCTCTGGGCAGCCCCAATCTGGCTaGTCTTGGGGCGGGAATGGA | + |
|
Preference number: 2 (lower is better) Translates to: SFSASLTRPWHLLETASGQPQSG*SWGGNG Trigger: TCCATTCCCGCCCCAAGAGCAGCCAGATTGGGGCTG...CCCAGAGGCTGTCTCCAGGAGATGCCAGGGTCTTGTCAAACTAGCAGAAAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR-3UTR CCA 90 bp | TTGACAAGACCCTGGCATCTCCTGGAGACAGCCTCTGGGGATGAACTCAGGGCCCAATCTGGCTGCTCTTaGGGCGGGAATGGAAGTAGT | + |
|
Preference number: 2 (lower is better) Translates to: LTRPWHLLETASGDELRAQSGCS*GGNGSS Trigger: ACTACTTCCATTCCCGCCCCAAGAGCAGCCAGATTG...GGCCCTGAGTTCATCCCCAGAGGCTGTCTCCAGGAGATGCCAGGGTCTTGTCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR-3UTR CCA 90 bp | TCCTTTTCTGCTAGTTTGACAAGACCCTGGCATCTCCTGGAGACAGCCTCTGGGCTCGGCCTCCTTCTCTaGGAGTTTCTTCACAGGGCC | + |
|
Preference number: 2 (lower is better) Translates to: SFSASLTRPWHLLETASGLGLLL*EFLHRA Trigger: GGCCCTGTGAAGAAACTCCCAGAGAAGGAGGCCGAG...CCCAGAGGCTGTCTCCAGGAGATGCCAGGGTCTTGTCAAACTAGCAGAAAAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR-3UTR TCA 90 bp | TACGGCACTTTGTTCCAGCCACTAACTGATTCGGAGTTCAGAGAACTTGGAGGGCTCTCTGCCCCCTGGTaGTTCCCCAACATTCTTGGG | + |
|
Preference number: 2 (lower is better) Translates to: YGTLFQPLTDSEFRELGGLSAPW*FPNILG Trigger: CCCAAGAATGTTGGGGAATCACCAGGGGGCAGAGAG...CCCTCCAAGTTCTCTGAACTCCGAATCAGTTAGTGGCTGGAACAAAGTGCCGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CAA 90 bp | GAAGTGGGGGATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTaGTTAGTGACAGAGGCTGAAGCACACAGCCACAAAGTCAAAACA | + |
|
Preference number: 2 (lower is better) Translates to: EVGDQHRTRLPREEP*LVTEAEAHSHKVKT Trigger: TGTTTTGACTTTGTGGCTGTGTGCTTCAGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATCCCCCACTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTAGGCCAACGCTTGCCTaGGATATAAACACAGTGAGT | + |
|
Preference number: 2 (lower is better) Translates to: DQHRTRLPREEPLLVTEARPTLA*DINTVS Trigger: ACTCACTGTGTTTATATCCCAGGCAAGCGTTGGCCT...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTGCTCCTTTCCATGGCTaGGAAGCCTTTTGTCTATCT | + |
|
Preference number: 2 (lower is better) Translates to: DQHRTRLPREEPLLVTEAAPFHG*EAFCLS Trigger: AGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGC...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CAA 90 bp | CCCCCAAACCCAGGAGCAAAGTCAAGGGAACACTTAGGAGATCCTTaGCTATTTGTGATTCTCTACAACCCTACGGCACTTTGTTCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: PPNPGAKSREHLGDP*LFVILYNPTALCSS Trigger: GCTGGAACAAAGTGCCGTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCTCCTAAGTGTTCCCTTGACTTTGCTCCTGGGTTTGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR GCA 90 bp | AACGCTTGCCTGGGATATAAACACAGTGAGTTCAGGGCTAACCTAGGGGAAGCACCTTATTCCCATAACTaGTTTTCCCCACTCTCTGCC | + |
|
Preference number: 2 (lower is better) Translates to: NACLGYKHSEFRANLGEAPYSHN*FSPLSA Trigger: GGCAGAGAGTGGGGAAAAGCAGTTATGGGAATAAGG...TGCTTCCCCTAGGTTAGCCCTGAACTCACTGTGTTTATATCCCAGGCAAGCGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | AACAAGGCAAGTGTGTCCAGGGTGATAAGTTCAAGGCCAACCAGAACATATAATTGGAGCTGGGCCTGGTaGCACAAGCCAAGAATCAAC | + |
|
Preference number: 2 (lower is better) Translates to: NKASVSRVISSRPTRTYNWSWAW*HKPRIN Trigger: GTTGATTCTTGGCTTGTGCCACCAGGCCCAGCTCCA...ATTATATGTTCTGGTTGGCCTTGAACTTATCACCCTGGACACACTTGCCTTGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | AAGGCAAGTGTGTCCAGGGTGATAAGTTCAAGGCCAACCAGAACATATAATGATAACAAGAACTGGAGCTaGGCCTGGTGGCACAAGCCA | + |
|
Preference number: 2 (lower is better) Translates to: KASVSRVISSRPTRTYNDNKNWS*AWWHKP Trigger: TGGCTTGTGCCACCAGGCCCAGCTCCAGTTCTTGTT...ATCATTATATGTTCTGGTTGGCCTTGAACTTATCACCCTGGACACACTTGCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | AAGGCAAGTGTGTCCAGGGTGATAAGTTCAAGGCCAACCAGAACATATAATGATACAGCAAACATGGCCTaGGCTGGCTCCTTTCCATGG | + |
|
Preference number: 2 (lower is better) Translates to: KASVSRVISSRPTRTYNDTANMA*AGSFPW Trigger: CCATGGAAAGGAGCCAGCCCAGGCCATGTTTGCTGT...ATCATTATATGTTCTGGTTGGCCTTGAACTTATCACCCTGGACACACTTGCCTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CAA 90 bp | AGGAGATCCTTTGCTATTTGTGATTCTCTACAACCCTACGGCACTTaGTTCCAGCCACTAACTGATTCGGAGTTCAGAGAACTTGGAGGG | + |
|
Preference number: 2 (lower is better) Translates to: RRSFAICDSLQPYGT*FQPLTDSEFRELGG Trigger: CCCTCCAAGTTCTCTGAACTCCGAATCAGTTAGTGGCTGGAACAAAGTGCCGTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR TCA 90 bp | AAGTTTTTATTACACCCTTGTGCACTGGCACTGACAGTTGGGATCACACTAAAGAACTACTCCAGGGACTaGGGCAAGAGGAACTCAAGG | + |
|
Preference number: 2 (lower is better) Translates to: KFLLHPCALALTVGITLKNYSRD*GKRNSR Trigger: CCTTGAGTTCCTCTTGCCTCAGTCCCTGGAGTAGTT...CTTTAGTGTGATCCCAACTGTCAGTGCCAGTGCACAAGGGTGTAATAAAAACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | AAGTTTTTATTACACCCTTGTGCACTGGCACTGACAGTTGGGATCACACTAAAGGCTGGCTCCTTTCCATaGCTGGGAAGCCTTTTGTCT | + |
|
Preference number: 2 (lower is better) Translates to: KFLLHPCALALTVGITLKAGSFP*LGSLLS Trigger: AGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAGC...CTTTAGTGTGATCCCAACTGTCAGTGCCAGTGCACAAGGGTGTAATAAAAACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CCA 90 bp | TCTCTCCTAGGGACATCATCCTTTTCTGCTAGTTTGACAAGACCCTGGCATCTCGATGAACTCAGGGCCTaGCTCATGAAGAGGATTATA | + |
|
Preference number: 2 (lower is better) Translates to: SLLGTSSFSASLTRPWHLDELRA*LMKRII Trigger: TATAATCCTCTTCATGAGCCAGGCCCTGAGTTCATC...GAGATGCCAGGGTCTTGTCAAACTAGCAGAAAAGGATGATGTCCCTAGGAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGTTTTTATTACACCCTTGTGCACTGGCACTGACAGTTGGGATCACACTAAAGCTTAAAAACAAGAACTaGAGCTGGGCCTGGTGGCAC | + |
|
Preference number: 2 (lower is better) Translates to: KFLLHPCALALTVGITLKLKNKN*SWAWWH Trigger: GTGCCACCAGGCCCAGCTCCAGTTCTTGTTTTTAAG...CTTTAGTGTGATCCCAACTGTCAGTGCCAGTGCACAAGGGTGTAATAAAAACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR GCA 90 bp | AGCCTTTTGTCTATCTGCAGCCTGATTAATTTATTACTGGAAACAGCTCCCAAGGTAAAGAGAGAGAAATaGTGGGACTCTCACTCAGTG | + |
|
Preference number: 2 (lower is better) Translates to: SLLSICSLINLLLETAPKVKREK*WDSHSV Trigger: CACTGAGTGAGAGTCCCAGCATTTCTCTCTCTTTAC...CTTGGGAGCTGTTTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR TCA 72 bp | TTACCTCCCGGTCAGGGATCACAGAACTCTGGCGACTaGCCACAGCCCCAATCTGGCTGCTCTTGGGGCGGG | + |
|
Preference number: 3 (lower is better) Translates to: LPPGQGSQNSGD*PQPQSGCSWGG Trigger: CCCGCCCCAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGGTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR CCA 72 bp | CACAGGGTCAATGTCCTTCCTGGACCCAGGCTGAAGTaGGGGATCAACACAGGACAAGGTTGCCTCGGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: HRVNVLPGPRLK*GINTGQGCLGR Trigger: CCTCCCGAGGCAACCTTGTCCTGTGTTGATCCCCCACTTCAGCCTGGGTCCAGGAAGGACATTGACCCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 72 bp | GTACCTGGCCGATGGCCACAGGGTCAATGTCCTTCCTaGACCCAGGCTGAAGTGGGGGATCAACACAGGACA | + |
|
Preference number: 3 (lower is better) Translates to: VPGRWPQGQCPS*TQAEVGDQHRT Trigger: TGTCCTGTGTTGATCCCCCACTTCAGCCTGGGTCCAGGAAGGACATTGACCCTGTGGCCATCGGCCAGGTAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR TCA 72 bp | ATGGCCACAGGGTCAATGTCCTTCCTGGACCCAGGCTaGAGTGGGGGATCAACACAGGACAAGGTTGCCTCG | + |
|
Preference number: 3 (lower is better) Translates to: MATGSMSFLDPG*SGGSTQDKVAS Trigger: CGAGGCAACCTTGTCCTGTGTTGATCCCCCACTTCAGCCTGGGTCCAGGAAGGACATTGACCCTGTGGCCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 72 bp | GTCCTACTTACCTCCCGGTCAGGGATCACAGAACTCTaGCGACTGACCACAGCCCCAATCTGGCTGCTCTTG | + |
|
Preference number: 3 (lower is better) Translates to: VLLTSRSGITEL*RLTTAPIWLLL Trigger: CAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGGTAAGTAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR CCA 72 bp | GTCACAGCAAACATGGCCTGGGCTGGCTCCTTTCCATaGCTGGGAAGCCTTTTGTCTATCTGCAGCCTGATT | + |
|
Preference number: 3 (lower is better) Translates to: VTANMAWAGSFP*LGSLLSICSLI Trigger: AATCAGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAGCCCAGGCCATGTTTGCTGTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR GCA 72 bp | CAGGGACTGAGGCAAGAGGAACTCAAGGCCAACGCTTaGCTGGGATATAAACACAGTGAGTTCAGGGCTAAC | + |
|
Preference number: 3 (lower is better) Translates to: QGLRQEELKANA*LGYKHSEFRAN Trigger: GTTAGCCCTGAACTCACTGTGTTTATATCCCAGGCAAGCGTTGGCCTTGAGTTCCTCTTGCCTCAGTCCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 72 bp | CTCCTGGAGACAGCCTCTGGGGATGAACTCAGGGCCTaGCTCATGAAGAGGATTATACAGAGGTCCTACTTA | + |
|
Preference number: 3 (lower is better) Translates to: LLETASGDELRA*LMKRIIQRSYL Trigger: TAAGTAGGACCTCTGTATAATCCTCTTCATGAGCCAGGCCCTGAGTTCATCCCCAGAGGCTGTCTCCAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| 3UTR TCA 72 bp | GTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTaGAGCACACAGCCACAAAGTCAAAACAAGGCAAGT | + |
|
Preference number: 3 (lower is better) Translates to: VASGGAFVSDRG*STQPQSQNKAS Trigger: ACTTGCCTTGTTTTGACTTTGTGGCTGTGTGCTTCAGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CCA 72 bp | AGAACATATAATGATTTGTCTGAGTCACAGCAAACATaGCCTGGGCTGGCTCCTTTCCATGGCTGGGAAGCC | + |
|
Preference number: 3 (lower is better) Translates to: RTYNDLSESQQT*PGLAPFHGWEA Trigger: GGCTTCCCAGCCATGGAAAGGAGCCAGCCCAGGCCATGTTTGCTGTGACTCAGACAAATCATTATATGTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR GCA 72 bp | GGCTCCTTTCCATGGCTGGGAAGCCTTTTGTCTATCTaGAGCCTGATTAATTTATTACTGGAAACAGCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: GSFPWLGSLLSI*SLINLLLETAP Trigger: GGGAGCTGTTTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR TCA 72 bp | TTCCATGGCTGGGAAGCCTTTTGTCTATCTGCAGCCTaGTTAATTTATTACTGGAAACAGCTCCCAAGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: FHGWEAFCLSAA*LIYYWKQLPSQ Trigger: CTGGCTTGGGAGCTGTTTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR-3UTR CAA 90 bp | AAGGCAAGTGTGTCCAGGGTGATAAGTTCAAGGCCAACCAGAACATATAATGATCACTTAGGAGATCCTTaGCTATTTGTGATTCTCTAC | + |
|
Preference number: 3 (lower is better) Translates to: KASVSRVISSRPTRTYNDHLGDP*LFVILY Trigger: GTAGAGAATCACAAATAGCAAAGGATCTCCTAAGTG...ATCATTATATGTTCTGGTTGGCCTTGAACTTATCACCCTGGACACACTTGCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR GCA 90 bp | CTCTGGCGACTGACCACAGCCCCAATCTGGCTGCTCTTGGGGCGGGAATGGAAGCCCCGCGGTAACTCTTaGGCATTGGTCCCAGGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LWRLTTAPIWLLLGREWKPRGNS*ALVPGP Trigger: TGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGG...CTTCCATTCCCGCCCCAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| CDS-3UTR TCA 90 bp | GCGGGAATGGAAGTAGTTCTCGGCCTCCTTCTCTGGGAGTTTCTTCACAGGGCCTTGGTCCCAGGTCCATaGCTGCACCCCGACAGCACA | + |
|
Preference number: 4 (lower is better) Translates to: AGMEVVLGLLLWEFLHRALVPGP*LHPDST Trigger: TGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAA...GGCCCTGTGAAGAAACTCCCAGAGAAGGAGGCCGAGAACTACTTCCATTCCCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| CDS-3UTR TCA 90 bp | CCTGGTGGCACAAGCCAAGAATCAACTACTCCAGGGACTGAGGCAAGAGGAACTTTGGTCCCAGGTCCATaGCTGCACCCCGACAGCACA | + |
|
Preference number: 4 (lower is better) Translates to: PGGTSQESTTPGTEARGTLVPGP*LHPDST Trigger: TGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAA...AGTTCCTCTTGCCTCAGTCCCTGGAGTAGTTGATTCTTGGCTTGTGCCACCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR GCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTCAGCCCCAATCTGGCTaGTCTTGGGGCGGGAATGGA | + |
|
Preference number: 4 (lower is better) Translates to: DQHRTRLPREEPLLVTEAQPQSG*SWGGNG Trigger: TCCATTCCCGCCCCAAGAGCAGCCAGATTGGGGCTG...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | TGGCATCTCCTGGAGACAGCCTCTGGGGATGAACTCAGGGCCTGGCTCATGAAGGTAACTCTTGCGCATTaGTCCCAGGTCCATGACTGC | + |
|
Preference number: 4 (lower is better) Translates to: WHLLETASGDELRAWLMKVTLAH*SQVHDC Trigger: GCAGTCATGGACCTGGGACCAATGCGCAAGAGTTAC...CTTCATGAGCCAGGCCCTGAGTTCATCCCCAGAGGCTGTCTCCAGGAGATGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| CDS-3UTR TCA 90 bp | CAAGAATCAACTACTCCAGGGACTGAGGCAAGAGGAACTCAAGGCCAACGCTTGCAGAACTCTGGCGACTaGCCACAGCCCCAATCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QESTTPGTEARGTQGQRLQNSGD*PQPQSG Trigger: GCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTG...CAAGCGTTGGCCTTGAGTTCCTCTTGCCTCAGTCCCTGGAGTAGTTGATTCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTCAGTCTTCCTCCCCGTaGTGGGTCATGGGTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: DQHRTRLPREEPLLVTEAQSSSP*WVMGPK Trigger: TTTGGGACCCATGACCCACCACGGGGAGGAAGACTG...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR GCA 90 bp | CTTACCTCCCGGTCAGGGATCACAGAACTCTGGCGACTGACCACAGCCCCAATCAACCAGGAAGCAAACTaGTTCATGGGATCCAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LTSRSGITELWRLTTAPINQEAN*FMGSRE Trigger: CTCTCTGGATCCCATGAAGCAGTTTGCTTCCTGGTT...GATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGGTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| CDS-3UTR CCA 90 bp | GAGAGAGAAATGCTGGGACTCTCACTCAGTGGTACAGAGTTGCCGAGCCTGAGCCCCAGTATTCTGGCTTaGGTACCTCTTGGTCCTGGT | + |
|
Preference number: 4 (lower is better) Translates to: EREMLGLSLSGTELPSLSPSILA*VPLGPG Trigger: ACCAGGACCAAGAGGTACCCAAGCCAGAATACTGGG...GCTCAGGCTCGGCAACTCTGTACCACTGAGTGAGAGTCCCAGCATTTCTCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTGCCACCCCAGTATTCTaGCTTGGGTACCTCTTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: DQHRTRLPREEPLLVTEAATPVF*LGYLLV Trigger: GACCAAGAGGTACCCAAGCCAGAATACTGGGGTGGC...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | AACGCTTGCCTGGGATATAAACACAGTGAGTTCAGGGCTAACCTAGGGGAAGCATCTTCCTCCCCGTGGTaGGTCATGGGTCCCAAAGGG | + |
|
Preference number: 4 (lower is better) Translates to: NACLGYKHSEFRANLGEASSSPW*VMGPKG Trigger: CCCTTTGGGACCCATGACCCACCACGGGGAGGAAGA...TGCTTCCCCTAGGTTAGCCCTGAACTCACTGTGTTTATATCCCAGGCAAGCGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | CCTGGTGGCACAAGCCAAGAATCAACTACTCCAGGGACTGAGGCAAGAGGAACTGTAACTCTTGCGCATTaGTCCCAGGTCCATGACTGC | + |
|
Preference number: 4 (lower is better) Translates to: PGGTSQESTTPGTEARGTVTLAH*SQVHDC Trigger: GCAGTCATGGACCTGGGACCAATGCGCAAGAGTTAC...AGTTCCTCTTGCCTCAGTCCCTGGAGTAGTTGATTCTTGGCTTGTGCCACCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | CAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTGAACAATCTGGCTGCTCTTaGGGCGGGAATGGAAGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: QHRTRLPREEPLLVTEAEQSGCS*GGNGSS Trigger: ACTACTTCCATTCCCGCCCCAAGAGCAGCCAGATTG...TTCAGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | CCTGGTGGCACAAGCCAAGAATCAACTACTCCAGGGACTGAGGCAAGAGGAACTTGGAGGCGGTTGGTTTaGCCTTGCCAAAACTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: PGGTSQESTTPGTEARGTWRRLV*PCQNSI Trigger: GATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCA...AGTTCCTCTTGCCTCAGTCCCTGGAGTAGTTGATTCTTGGCTTGTGCCACCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTGGTCATGGAGGCGGTTaGTTTGGCCTTGCCAAAACT | + |
|
Preference number: 4 (lower is better) Translates to: DQHRTRLPREEPLLVTEAGHGGG*FGLAKT Trigger: AGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACC...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR GCA 90 bp | GAGAGAGAAATGCTGGGACTCTCACTCAGTGGTACAGAGTTGCCGAGCCTGAGCAACCAGGAAGCAAACTaGTTCATGGGATCCAGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: EREMLGLSLSGTELPSLSNQEAN*FMGSRE Trigger: CTCTCTGGATCCCATGAAGCAGTTTGCTTCCTGGTT...GCTCAGGCTCGGCAACTCTGTACCACTGAGTGAGAGTCCCAGCATTTCTCTCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR GCA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTCGGTTGGTTTGGCCTTaGCAAAACTCCATCACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: DQHRTRLPREEPLLVTEARLVWP*QNSITW Trigger: CCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCG...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | AGAGGTCCTACTTACCTCCCGGTCAGGGATCACAGAACTCTGGCGACTGACCACAAGCAAACTGCTTCATaGGATCCAGAGAGGTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: RGPTYLPVRDHRTLATDHKQTAS*DPERSD Trigger: ATCTGACCTCTCTGGATCCCATGAAGCAGTTTGCTT...GTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGGTAAGTAGGACCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107629.2 |
||
| CDS-3UTR GCA 90 bp | AGATCCTTTGCTATTTGTGATTCTCTACAACCCTACGGCACTTTGTTCCAGCCACCCCGCGGTAACTCTTaGGCATTGGTCCCAGGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: RSFAICDSLQPYGTLFQPPRGNS*ALVPGP Trigger: TGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGG...TGGCTGGAACAAAGTGCCGTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | AAGGCAAGTGTGTCCAGGGTGATAAGTTCAAGGCCAACCAGAACATATAATGATCCCCGTGGTGGGTCATaGGTCCCAAAGGGGAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: KASVSRVISSRPTRTYNDPRGGS*VPKGSL Trigger: GAGACTCCCCTTTGGGACCCATGACCCACCACGGGG...ATCATTATATGTTCTGGTTGGCCTTGAACTTATCACCCTGGACACACTTGCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | AGATCCTTTGCTATTTGTGATTCTCTACAACCCTACGGCACTTTGTTCCAGCCAGGGATCACAGAACTCTaGCGACTGACCACAGCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: RSFAICDSLQPYGTLFQPGITEL*RLTTAP Trigger: TGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCC...TGGCTGGAACAAAGTGCCGTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CAA 72 bp | GCCTGGGCTGGCTCCTTTCCATGGCTGGGAAGCCTTTaGTCTATCTGCAGCCTGATTAATTTATTACTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: AWAGSFPWLGSL*SICSLINLLLE Trigger: TTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCTTCCCAGCCATGGAAAGGAGCCAGCCCAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | AGCCTTTTGTCTATCTGCAGCCTGATTAATTTATTACTGGAAACAGCTCCCAAGCTCGGCCTCCTTCTCTaGGAGTTTCTTCACAGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLLSICSLINLLLETAPKLGLLL*EFLHRA Trigger: GGCCCTGTGAAGAAACTCCCAGAGAAGGAGGCCGAG...CTTGGGAGCTGTTTCCAGTAATAAATTAATCAGGCTGCAGATAGACAAAAGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | AAGGCAAGTGTGTCCAGGGTGATAAGTTCAAGGCCAACCAGAACATATAATGATAAGACAATACGGTCATaGAGGCGGTTGGTTTGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: KASVSRVISSRPTRTYNDKTIRS*RRLVWP Trigger: AGGCCAAACCAACCGCCTCCATGACCGTATTGTCTT...ATCATTATATGTTCTGGTTGGCCTTGAACTTATCACCCTGGACACACTTGCCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CAA 72 bp | CCAGGAGCAAAGTCAAGGGAACACTTAGGAGATCCTTaGCTATTTGTGATTCTCTACAACCCTACGGCACTT | + |
|
Preference number: 4 (lower is better) Translates to: PGAKSREHLGDP*LFVILYNPTAL Trigger: AAGTGCCGTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCTCCTAAGTGTTCCCTTGACTTTGCTCCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| 3UTR CAA 72 bp | GTGATAAGTTCAAGGCCAACCAGAACATATAATGATTaGTCTGAGTCACAGCAAACATGGCCTGGGCTGGCT | + |
|
Preference number: 4 (lower is better) Translates to: VISSRPTRTYND*SESQQTWPGLA Trigger: AGCCAGCCCAGGCCATGTTTGCTGTGACTCAGACAAATCATTATATGTTCTGGTTGGCCTTGAACTTATCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CCA 90 bp | GTCAAGGGAACACTTAGGAGATCCTTTGCTATTTGTGATTCTCTACAACCCTACAAGCAAACTGCTTCATaGGATCCAGAGAGGTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: VKGTLRRSFAICDSLQPYKQTAS*DPERSD Trigger: ATCTGACCTCTCTGGATCCCATGAAGCAGTTTGCTT...GTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCTCCTAAGTGTTCCCTTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS TCA 90 bp | CCTCTCGATCCCCGCGGTAACTCTTGCGCATTGGTCCCAGGTCCATaGCTGCACCCCGACAGCACAGGTGACGGAGGTAGCCCGTCCACT | + |
|
Preference number: 5 (lower is better) Translates to: PLDPRGNSCALVPGP*LHPDSTGDGGSPST Trigger: AGTGGACGGGCTACCTCCGTCACCTGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGGATCGAGAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018803.12 ENSMUST00000107629.2 |
||
| CDS GCA 90 bp | TCGATCCCCGCGGTAACTCTTGCGCATTGGTCCCAGGTCCATGACTaGACCCCGACAGCACAGGTGACGGAGGTAGCCCGTCCACTTCGC | + |
|
Preference number: 5 (lower is better) Translates to: SIPAVTLAHWSQVHD*TPTAQVTEVARPLR Trigger: GCGAAGTGGACGGGCTACCTCCGTCACCTGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGGATCGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018803.12 ENSMUST00000107629.2 |
||
| CDS GCA 90 bp | TTCCTCCCCGTGGTGGGTCATGGGTCCCAAAGGGGAGTCTCCTGTTaGCAGGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: FLPVVGHGSQRGVSC*QASAEDNTVMEAVG Trigger: ACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCACGGGGAGGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 90 bp | AGTCTCCTCGAATGCCTCTCGATCCCCGCGGTAACTCTTGCGCATTaGTCCCAGGTCCATGACTGCACCCCGACAGCACAGGTGACGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SLLECLSIPAVTLAH*SQVHDCTPTAQVTE Trigger: CTCCGTCACCTGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGGATCGAGAGGCATTCGAGGAGACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018803.12 ENSMUST00000107629.2 |
||
| CDS CCA 90 bp | GTGCAAGTCTCTCATACACCCAGTCTTCCTCCCCGTGGTGGGTCATaGGTCCCAAAGGGGAGTCTCCTGTTGCCAGGCCTCGGCGGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: VQVSHTPSLPPRGGS*VPKGSLLLPGLGGR Trigger: TCTTCCGCCGAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCACGGGGAGGAAGACTGGGTGTATGAGAGACTTGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 90 bp | GGGGAGTCTCCTGTTGCCAGGCCTCGGCGGAAGACAATACGGTCATaGAGGCGGTTGGTTTGGCCTTGCCAAAACTCCATCACTTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: GESPVARPRRKTIRS*RRLVWPCQNSITWG Trigger: CCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGGAGACTCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 90 bp | GCTGCTCTTGGGGCGGGAATGGAAGTAGTTCTCGGCCTCCTTCTCTaGGAGTTTCTTCACAGGGCCTTCCACACGCACCTGACGGTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: AALGAGMEVVLGLLL*EFLHRAFHTHLTVQ Trigger: CTGAACCGTCAGGTGCGTGTGGAAGGCCCTGTGAAGAAACTCCCAGAGAAGGAGGCCGAGAACTACTTCCATTCCCGCCCCAAGAGCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS TCA 90 bp | TCTTTCTCAGGTACTCCCGGTCAGGGATCACAGAACTCTGGCGACTaGCCACAGCCCCAATCTGGCTGCTCTTGGGGCGGGAATGGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: SFSGTPGQGSQNSGD*PQPQSGCSWGGNGS Trigger: ACTTCCATTCCCGCCCCAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGTACCTGAGAAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 90 bp | CTGTTGCCAGGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTTaGTTTGGCCTTGCCAAAACTCCATCACTTGGGGGTACAGGATGT | + |
|
Preference number: 5 (lower is better) Translates to: LLPGLGGRQYGHGGG*FGLAKTPSLGGTGC Trigger: ACATCCTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CAA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTCCCCAGTATTCTGGCTaGGGTACCTCTTGGTCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: DQHRTRLPREEPLLVTEAPQYSG*GTSWSW Trigger: CCAGGACCAAGAGGTACCCAAGCCAGAATACTGGGG...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CAA 90 bp | GAGAGAGAAATGCTGGGACTCTCACTCAGTGGTACAGAGTTGCCGAGCCTGAGCCCAAAACTCCATCACTaGGGGGTACAGGATGTAGCC | + |
|
Preference number: 5 (lower is better) Translates to: EREMLGLSLSGTELPSLSPKLHH*GVQDVA Trigger: GGCTACATCCTGTACCCCCAAGTGATGGAGTTTTGG...GCTCAGGCTCGGCAACTCTGTACCACTGAGTGAGAGTCCCAGCATTTCTCTCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CAA 90 bp | GATCAACACAGGACAAGGTTGCCTCGGGAGGAGCCTTTGTTAGTGACAGAGGCTGCGGTTGGTTTGGCCTaGCCAAAACTCCATCACTTG | + |
|
Preference number: 5 (lower is better) Translates to: DQHRTRLPREEPLLVTEAAVGLA*PKLHHL Trigger: CAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGC...AGCCTCTGTCACTAACAAAGGCTCCTCCCGAGGCAACCTTGTCCTGTGTTGATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS TCA 90 bp | CAGGTAGCCACACACATAGCATTGGCTTCTCCTATGTCCGGACACTaGACAGCCTCGTCAAACCAGGAAGCAAACTGCTTCATGGGATCC | + |
|
Preference number: 5 (lower is better) Translates to: QVATHIALASPMSGH*TASSNQEANCFMGS Trigger: GGATCCCATGAAGCAGTTTGCTTCCTGGTTTGACGAGGCTGTTCAGTGTCCGGACATAGGAGAAGCCAATGCTATGTGTGTGGCTACCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018803.12 ENSMUST00000107629.2 |
||
| CDS-3UTR CAA 90 bp | AAGTTTTTATTACACCCTTGTGCACTGGCACTGACAGTTGGGATCACACTAAAGTGGCTTGGGTACCTCTaGGTCCTGGTAGAGCTGCCC | + |
|
Preference number: 5 (lower is better) Translates to: KFLLHPCALALTVGITLKWLGYL*VLVELP Trigger: GGGCAGCTCTACCAGGACCAAGAGGTACCCAAGCCA...CTTTAGTGTGATCCCAACTGTCAGTGCCAGTGCACAAGGGTGTAATAAAAACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS-3UTR CAA 90 bp | AGATCCTTTGCTATTTGTGATTCTCTACAACCCTACGGCACTTTGTTCCAGCCAATGGAGGCGGTTGGTTaGGCCTTGCCAAAACTCCAT | + |
|
Preference number: 5 (lower is better) Translates to: RSFAICDSLQPYGTLFQPMEAVG*ALPKLH Trigger: ATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCAT...TGGCTGGAACAAAGTGCCGTAGGGTTGTAGAGAATCACAAATAGCAAAGGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS TCA 72 bp | GGTACTCCCGGTCAGGGATCACAGAACTCTGGCGACTaGCCACAGCCCCAATCTGGCTGCTCTTGGGGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: GTPGQGSQNSGD*PQPQSGCSWGG Trigger: CCCGCCCCAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGTACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 90 bp | CTTCCTCCCCGTGGTGGGTCATGGGTCCCAAAGGGGAGTCTCCTGTaGCCAGGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: LPPRGGSWVPKGSLL*PGLGGRQYGHGGGW Trigger: CCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCACGGGGAGGAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS GCA 72 bp | GCGGTAACTCTTGCGCATTGGTCCCAGGTCCATGACTaGACCCCGACAGCACAGGTGACGGAGGTAGCCCGT | + |
|
Preference number: 6 (lower is better) Translates to: AVTLAHWSQVHD*TPTAQVTEVAR Trigger: ACGGGCTACCTCCGTCACCTGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAATGCGCAAGAGTTACCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018803.12 ENSMUST00000107629.2 |
||
| CDS GCA 72 bp | GTGGTGGGTCATGGGTCCCAAAGGGGAGTCTCCTGTTaGCAGGCCTCGGCGGAAGACAATACGGTCATGGAG | + |
|
Preference number: 6 (lower is better) Translates to: VVGHGSQRGVSC*QASAEDNTVME Trigger: CTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 72 bp | GAATGCCTCTCGATCCCCGCGGTAACTCTTGCGCATTaGTCCCAGGTCCATGACTGCACCCCGACAGCACAG | + |
|
Preference number: 6 (lower is better) Translates to: ECLSIPAVTLAH*SQVHDCTPTAQ Trigger: CTGTGCTGTCGGGGTGCAGTCATGGACCTGGGACCAATGCGCAAGAGTTACCGCGGGGATCGAGAGGCATTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018803.12 ENSMUST00000107629.2 |
||
| CDS CCA 72 bp | TCTCATACACCCAGTCTTCCTCCCCGTGGTGGGTCATaGGTCCCAAAGGGGAGTCTCCTGTTGCCAGGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: SHTPSLPPRGGS*VPKGSLLLPGL Trigger: GAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCACGGGGAGGAAGACTGGGTGTATGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 72 bp | CGTGGTGGGTCATGGGTCCCAAAGGGGAGTCTCCTGTaGCCAGGCCTCGGCGGAAGACAATACGGTCATGGA | + |
|
Preference number: 6 (lower is better) Translates to: RGGSWVPKGSLL*PGLGGRQYGHG Trigger: TCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGGAGACTCCCCTTTGGGACCCATGACCCACCACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 90 bp | TGCCAGGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTTGGTTaGGCCTTGCCAAAACTCCATCACTTGGGGGTACAGGATGTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CQASAEDNTVMEAVG*ALPKLHHLGVQDVA Trigger: GGCTACATCCTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 90 bp | CCTGTTGCCAGGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTaGGTTTGGCCTTGCCAAAACTCCATCACTTGGGGGTACAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: PVARPRRKTIRSWRR*VWPCQNSITWGYRM Trigger: CATCCTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 72 bp | GGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTTaGTTTGGCCTTGCCAAAACTCCATCACTTGGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: GLGGRQYGHGGG*FGLAKTPSLGG Trigger: ACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 72 bp | CCTGTTGCCAGGCCTCGGCGGAAGACAATACGGTCATaGAGGCGGTTGGTTTGGCCTTGCCAAAACTCCATC | + |
|
Preference number: 6 (lower is better) Translates to: PVARPRRKTIRS*RRLVWPCQNSI Trigger: GATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCTGGCAACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 72 bp | GGTGCAAGTCTCTCATACACCCAGTCTTCCTCCCCGTaGTGGGTCATGGGTCCCAAAGGGGAGTCTCCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: GASLSYTQSSSP*WVMGPKGESPV Trigger: AACAGGAGACTCCCCTTTGGGACCCATGACCCACCACGGGGAGGAAGACTGGGTGTATGAGAGACTTGCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 72 bp | AGGCCTCGGCGGAAGACAATACGGTCATGGAGGCGGTaGGTTTGGCCTTGCCAAAACTCCATCACTTGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: RPRRKTIRSWRR*VWPCQNSITWG Trigger: CCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGAGGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 72 bp | TTTCTCAGGTACTCCCGGTCAGGGATCACAGAACTCTaGCGACTGACCACAGCCCCAATCTGGCTGCTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: FLRYSRSGITEL*RLTTAPIWLLL Trigger: CAAGAGCAGCCAGATTGGGGCTGTGGTCAGTCGCCAGAGTTCTGTGATCCCTGACCGGGAGTACCTGAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CCA 72 bp | CGGCGGAAGACAATACGGTCATGGAGGCGGTTGGTTTaGCCTTGCCAAAACTCCATCACTTGGGGGTACAGG | + |
|
Preference number: 6 (lower is better) Translates to: RRKTIRSWRRLV*PCQNSITWGYR Trigger: CCTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 72 bp | TCGGCGGAAGACAATACGGTCATGGAGGCGGTTGGTTaGGCCTTGCCAAAACTCCATCACTTGGGGGTACAG | + |
|
Preference number: 6 (lower is better) Translates to: SAEDNTVMEAVG*ALPKLHHLGVQ Trigger: CTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTCCGCCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||
| CDS CAA 72 bp | GAAGACAATACGGTCATGGAGGCGGTTGGTTTGGCCTaGCCAAAACTCCATCACTTGGGGGTACAGGATGTA | + |
|
Preference number: 6 (lower is better) Translates to: EDNTVMEAVGLA*PKLHHLGVQDV Trigger: TACATCCTGTACCCCCAAGTGATGGAGTTTTGGCAAGGCCAAACCAACCGCCTCCATGACCGTATTGTCTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000018803.12 |
||