RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PNPLA6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000004565

Ensembl transcript IDs: ENSMUST00000004681.14, ENSMUST00000111070.4, ENSMUST00000207146.2, ENSMUST00000207336.2, ENSMUST00000207421.2, ENSMUST00000207424.2, ENSMUST00000207941.2, ENSMUST00000208002.2, ENSMUST00000208310.2, ENSMUST00000208762.2

Found 550 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTaGAGCCAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGC +
Preference number: 1 (lower is better)
Translates to: ALPLGTGQVSPVCGP*SQGGRAQGVLKYSS
Trigger: GCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR GCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTaGCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCC +
Preference number: 1 (lower is better)
Translates to: LGEGHIVGQRLSVQF*PPLRDRASQSSVWS
Trigger: GGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR CAA 90 bp CCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGGAGTGTaGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACA +
Preference number: 2 (lower is better)
Translates to: PVCGPWSQGGRAQGV*KYSSSGNNSVSSPT
Trigger: TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGTGGGAATAATAGTGTaGGCTCCCCCACAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLVGIIV*APPQAH
Trigger: GTGAGCTTGTGGGGGAGCTCACACTATTATTCCCAC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTGGGAATAATAGTGTaGGCTCCCCCACAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKVGIIV*APPQAH
Trigger: GTGAGCTTGTGGGGGAGCTCACACTATTATTCCCAC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTAGTCAGTCCAGTGTGTaGTCCTTGGAGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLSQSSV*SLEPRG
Trigger: CCCCCTTGGCTCCAAGGACCACACACTGGACTGACT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR TCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGTGGGAATAATAGTGTaGGCTCCCCCACAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPVGIIV*APPQAH
Trigger: GTGAGCTTGTGGGGGAGCTCACACTATTATTCCCAC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR CCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAGTCAGTCCAGTGTGTaGTCCTTGGAGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPSQSSV*SLEPRG
Trigger: CCCCCTTGGCTCCAAGGACCACACACTGGACTGACT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGTGGGAATAATAGTGTaGGCTCCCCCACAAGCTCAC +
Preference number: 2 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPVGIIV*APPQAH
Trigger: GTGAGCTTGTGGGGGAGCTCACACTATTATTCCCAC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR CCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCAGTCAGTCCAGTGTGTaGTCCTTGGAGCCAAGGGGG +
Preference number: 2 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFSQSSV*SLEPRG
Trigger: CCCCCTTGGCTCCAAGGACCACACACTGGACTGACT...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR CCA 72 bp CCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTaGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGGAGT +
Preference number: 3 (lower is better)
Translates to: PPLRDRASQSSV*SLEPRGKGPGS
Trigger: ACTCCCTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR CCA 72 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTaGAGCCAAGGGGGAAGGGCCCAGGGAGTGTTGAAG +
Preference number: 3 (lower is better)
Translates to: LGTGQVSPVCGP*SQGGRAQGVLK
Trigger: CTTCAACACTCCCTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTAGGGCCCAGGGAGTGTaGAAGTATAGCAGCAGTGGG +
Preference number: 3 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCRAQGV*KYSSSG
Trigger: CCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCGCTGGGCTGCGCCGTaGGAAGAGGCGGCGAGGACA +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQRWAAP*EEAART
Trigger: TGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCGTGAGCACCGCCAGTTaGCCCACCAGCTCCCCTGGC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGVSTAS*PTSSPG
Trigger: GCCAGGGGAGCTGGTGGGGCAACTGGCGGTGCTCAC...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCCCTGCCCGAGACGCTaGAAGACCATGTGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAPCPRR*KTMCRQ
Trigger: CTGCCGGCACATGGTCTTCCAGCGTCTCGGGCAGGG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCTTCACGGGATCCCCTaGAGGTCCAGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRALHGIP*RSRQRS
Trigger: GCTCCTCTGCCTGGACCTGCAGGGGATCCCGTGAAG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCTGGCTGCCGGGTCAGTaGCTCCACCACGCCAATGAG +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAWLPGQ*LHHANE
Trigger: CTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCA...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCGGGACCCTCCGGGGCTaGAGTTTTCTGCACCCGCAG +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGGTLRG*SFLHPQ
Trigger: CTGCGGGTGCAGAAAACTCCAGCCCCGGAGGGTCCC...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCCAGGTCTCCCTCTGTaGGGTCAGCCTCCAGCACTG +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQPGLPL*GQPPAL
Trigger: CAGTGCTGGAGGCTGACCTCACAGAGGGAGACCTGG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGTCTCCCTCTGTaGGGTCAGCCTCCAGCACTG +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGPGLPL*GQPPAL
Trigger: CAGTGCTGGAGGCTGACCTCACAGAGGGAGACCTGG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGCCGTGCAGCCCTGGCTaGCACAGTCCGCTGGGGATG +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLPCSPG*HSPLGM
Trigger: CATCCCCAGCGGACTGTGTCAGCCAGGGCTGCACGG...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCTAGGGGATGCTGTCTaGGGTCCCCCAGATGCCTCT +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRALGDAV*GPPDAS
Trigger: AGAGGCATCTGGGGGACCTCAGACAGCATCCCCTAG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCAATGCTATCCAGTGCTaGAGCCCCCAGGAGTGCCCG +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRANAIQC*SPQECP
Trigger: CGGGCACTCCTGGGGGCTTCAGCACTGGATAGCATT...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCTCAGGCATCTGCGACTaGGCTGGGAGTCTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRASGICD*AGSLLR
Trigger: CCTCAGGAGACTCCCAGCTCAGTCGCAGATGCCTGA...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTGAGCACCGCCAGTTaGCCCACCAGCTCCCCTGGC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKVSTAS*PTSSPG
Trigger: GCCAGGGGAGCTGGTGGGGCAACTGGCGGTGCTCAC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGTGGTGGCTCGTGGCTaGCGGGTCAGTGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRVVARG*RVSAST
Trigger: GGTGGAGGCACTGACCCGGCAGCCACGAGCCACCAC...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGTGGTGGCTCGTGGCTaGCGGGTCAGTGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLVVARG*RVSAST
Trigger: GGTGGAGGCACTGACCCGGCAGCCACGAGCCACCAC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTACAGTGGTGGCTCGTaGCTGCCGGGTCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGYSGGS*LPGQCL
Trigger: GAGGCACTGACCCGGCAGCCACGAGCCACCACTGTA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCTAGGGGATGCTGTCTaGGGTCCCCCAGATGCCTCT +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQLGDAV*GPPDAS
Trigger: AGAGGCATCTGGGGGACCTCAGACAGCATCCCCTAG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCGGGAGAAGTCGCTGTaGCGGTCTGCACGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKREKSL*RSARLE
Trigger: CTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCGGGAGAAGTCGCTGTaGCGGTCTGCACGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRREKSL*RSARLE
Trigger: CTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGCGGGAGAAGTCGCTGTaGCGGTCTGCACGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLREKSL*RSARLE
Trigger: CTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCG...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGAGCTGGGAGTCTCCTaGGGCAGAAAGCGTCGTTGC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQELGVS*GRKRRC
Trigger: GCAACGACGCTTTCTGCCTCAGGAGACTCCCAGCTC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCCCCAGAGCACAAAGTaGAGGCTCACATCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAPQSTK*RLTSWS
Trigger: GGACCAGGATGTGAGCCTGCACTTTGTGCTCTGGGG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCGAGGACAGCGCAGGTaGAGGTGCCCTGAGCACCAG +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKRGQRR*RCPEHQ
Trigger: CTGGTGCTCAGGGCACCTGCACCTGCGCTGTCCTCG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGCGAGGACAGCGCAGGTaGAGGTGCCCTGAGCACCAG +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLRGQRR*RCPEHQ
Trigger: CTGGTGCTCAGGGCACCTGCACCTGCGCTGTCCTCG...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGGGACCCTCCGGGGCTaGAGTTTTCTGCACCCGCAG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRGTLRG*SFLHPQ
Trigger: CTGCGGGTGCAGAAAACTCCAGCCCCGGAGGGTCCC...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGCCCTGCCCGAGACGCTaGAAGACCATGTGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLPCPRR*KTMCRQ
Trigger: CTGCCGGCACATGGTCTTCCAGCGTCTCGGGCAGGG...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCCCTGCCCGAGACGCTaGAAGACCATGTGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKPCPRR*KTMCRQ
Trigger: CTGCCGGCACATGGTCTTCCAGCGTCTCGGGCAGGG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTTCACAGGCACCCGCTaGCTGCTCCCGGAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLFTGTR*LLPELL
Trigger: CAGGAGCTCCGGGAGCAGCCAGCGGGTGCCTGTGAA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCACATCCTGGTCCCCTTaGCGGGCTATGATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGTSWSP*RAMMVP
Trigger: CGGCACCATCATAGCCCGCCAAGGGGACCAGGATGT...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTATGCGAGCAGCCTCTaGCTCCGCCCCCACCCAGCA +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLYASSL*LRPHPA
Trigger: TGCTGGGTGGGGGCGGAGCCAGAGGCTGCTCGCATA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCCAGGTCTCCCTCTGTaGGGTCAGCCTCCAGCACTG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRPGLPL*GQPPAL
Trigger: CAGTGCTGGAGGCTGACCTCACAGAGGGAGACCTGG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGAAGCGCCAGGAAGGTaGCTCTCTGCAGCCTTACCA +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQEAPGR*LSAALP
Trigger: TGGTAAGGCTGCAGAGAGTCACCTTCCTGGCGCTTC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCTCAGTTTCTTCTTCATaGGGGGCCGGGAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRASVSSS*GAGKWW
Trigger: CCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGA...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCTTCACGGGATCCCCTaGAGGTCCAGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKLHGIP*RSRQRS
Trigger: GCTCCTCTGCCTGGACCTGCAGGGGATCCCGTGAAG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCCTTGTCAATCATaGGCTGGTACACGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAQPCQS*AGTRAG
Trigger: GCCTGCACGTGTACCAGCGCATGATTGACAAGGCTG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTGGCTGCCGGGTCAGTaGCTCCACCACGCCAATGAG +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLWLPGQ*LHHANE
Trigger: CTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCCATCCATGAGCAGGTaGCCATCCTTTGGGTCGCAC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQPSMSR*PSFGSH
Trigger: GTGCGACCCAAAGGATGGGCACCTGCTCATGGATGG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCGGCAGAAAGCGTCGTTaGCGGAGTGTGGACTTCTCT +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAGRKRR*RSVDFS
Trigger: AGAGAAGTCCACACTCCGGCAACGACGCTTTCTGCC...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCACCTCAGAGGGTAGGTaGGAATTGGCCAGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGTSEGR*ELARSP
Trigger: GGGAGACCTGGCCAATTCCCACCTACCCTCTGAGGT...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTACAGTGGTGGCTCGTaGCTGCCGGGTCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRYSGGS*LPGQCL
Trigger: GAGGCACTGACCCGGCAGCCACGAGCCACCACTGTA...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCTGCGTGTACAGTGGTaGCTCGTGGCTGCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKLRVQW*LVAAGS
Trigger: TGACCCGGCAGCCACGAGCCACCACTGTACACGCAG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCTACCGACGTTTGATGTaGCCTAAGGTGCCCTCGGGA +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAYRRLM*PKVPSG
Trigger: TCCCGAGGGCACCTTAGGCCACATCAAACGTCGGTA...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGAGGATGCAGTCGGCCTaGCGCAGACAACGGACGGTC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKRMQSA*RRQRTV
Trigger: GACCGTCCGTTGTCTGCGCCAGGCCGACTGCATCCT...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCTACGCCAAGCGGGACTaGATCTCAGCCATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAYAKRD*ISAMSG
Trigger: TCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTA...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCAGAGACGTAGCTTGTTaGTGGCTCGATCCGGGACAC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRARDVAC*WLDPGH
Trigger: GTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCT...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGACATCCGCCTGTGGCTaGCTCATCCTCACAGTAGCT +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQTSACG*LILTVA
Trigger: AGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGT...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTGTCCCCATAGGTGCTaGGATCTGTCTCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGCPHRC*DLSHPG
Trigger: GCCAGGATGAGACAGATCTCAGCACCTATGGGGACA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGTGTCCCCATAGGTGCTaGGATCTGTCTCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQCPHRC*DLSHPG
Trigger: GCCAGGATGAGACAGATCTCAGCACCTATGGGGACA...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCTCTTCTTCCACCTCTaGGGCAGTGCTAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKLFFHL*GSARAG
Trigger: GCCAGCCCTAGCACTGCCTCAGAGGTGGAAGAAGAG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCTGGGAGTCTCCTaGGGCAGAAAGCGTCGTTGC +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLELGVS*GRKRRC
Trigger: GCAACGACGCTTTCTGCCTCAGGAGACTCCCAGCTC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGGCAGAAAGCGTCGTTaGCGGAGTGTGGACTTCTCT +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQGRKRR*RSVDFS
Trigger: AGAGAAGTCCACACTCCGGCAACGACGCTTTCTGCC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGGACCCTCCGGGGCTaGAGTTTTCTGCACCCGCAG +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCGTLRG*SFLHPQ
Trigger: CTGCGGGTGCAGAAAACTCCAGCCCCGGAGGGTCCC...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGGGCCGGGAAGTGGTaGAGACTGATGTGTCCACCA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKGAGKW*RLMCPP
Trigger: TGGTGGACACATCAGTCTCCACCACTTCCCGGCCCC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGACATCCTGGTCCCCTTaGCGGGCTATGATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKTSWSP*RAMMVP
Trigger: CGGCACCATCATAGCCCGCCAAGGGGACCAGGATGT...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGTTGTCAATCATGCGCTaGTACACGTGCAGGCAGCCC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQLSIMR*YTCRQP
Trigger: GGGCTGCCTGCACGTGTACCAGCGCATGATTGACAA...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGTGCCCTCGGGAAGCTTaGCCAGCTCAGTGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKCPREA*PAQCLA
Trigger: TGCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCA...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTGCCCTCGGGAAGCTTaGCCAGCTCAGTGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLCPREA*PAQCLA
Trigger: TGCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGTACCGACGTTTGATGTaGCCTAAGGTGCCCTCGGGA +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQYRRLM*PKVPSG
Trigger: TCCCGAGGGCACCTTAGGCCACATCAAACGTCGGTA...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCGCGGGTCACAACCTGTaGGTACCGACGTTTGATGTG +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGAGHNL*VPTFDV
Trigger: CACATCAAACGTCGGTACCCACAGGTTGTGACCCGC...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATATGCGAGCAGCCTCTaGCTCCGCCCCCACCCAGCA +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRYASSL*LRPHPA
Trigger: TGCTGGGTGGGGGCGGAGCCAGAGGCTGCTCGCATA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCGACGTAGCTTGTTGGTaGCTCGATCCGGGACACAAT +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRADVACW*LDPGHN
Trigger: ATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTC...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGAGAGACGTAGCTTGTTaGTGGCTCGATCCGGGACAC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQRDVAC*WLDPGH
Trigger: GTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCT...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCGTCGTTGCCGGAGTGTaGACTTCTCTTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAVVAGV*TSLLPP
Trigger: AGGTGGAAGAAGAGAAGTCCACACTCCGGCAACGAC...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR CAA 72 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTaGGAGCCAAGGGGGAAGGGCCCAGGGAGTGTTGAA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWS*EPRGKGPGSVE
Trigger: TTCAACACTCCCTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCGTGCAGCCCTGGCTaGCACAGTCCGCTGGGGATG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSPCSPG*HSPLGM
Trigger: CATCCCCAGCGGACTGTGTCAGCCAGGGCTGCACGG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACACGCTGGGCTGCGCCGTaGGAAGAGGCGGCGAGGACA +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTRWAAP*EEAART
Trigger: TGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCG...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCAATAGGAGCTGGACTTaGCGACTTCTAGCTGCCGCA +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGNRSWT*RLLAAA
Trigger: TGCGGCAGCTAGAAGTCGTCAAGTCCAGCTCCTATT...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTCCTCCAGGGTCTTTTaGATCACCTCTGCCCCGGAG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRSSRVF*ITSAPE
Trigger: CTCCGGGGCAGAGGTGATTCAAAAGACCCTGGAGGA...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCTGAGGTCCCCCAGATaGCTCTTCTTGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRALRSPR*LFLKRN
Trigger: GTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCAGCCTCAAAGATGCTaGTTGTCTGGCGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRQPQRC*LSGGPG
Trigger: ACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGTGGTGGCTCGTGGCTaGCGGGTCAGTGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSVVARG*RVSAST
Trigger: GGTGGAGGCACTGACCCGGCAGCCACGAGCCACCAC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCTGGAAAGGGTCCTTaGAACTGCTGCAGATTGCCT +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGPGKGP*NCCRLP
Trigger: AGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGCTTGCAGAGCATGCTaGAGTTCCAGAGTAAAGGCC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQACRAC*SSRVKA
Trigger: GGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGTTGACGACTTCTAGCTaGCGCACACAGGACACGTAC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQLTTSS*RTQDTY
Trigger: GTACGTGTCCTGTGTGCGGCAGCTAGAAGTCGTCAA...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTATCACGCCCAGCACCTaGGGAACGAACGGCACAGGC +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCITPST*GTNGTG
Trigger: GCCTGTGCCGTTCGTTCCGCAGGTGCTGGGCGTGAT...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGACCTCAGAGGGTAGGTaGGAATTGGCCAGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKTSEGR*ELARSP
Trigger: GGGAGACCTGGCCAATTCCCACCTACCCTCTGAGGT...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGAGTCTCAGCACTGTaGAGTCCCGTGCAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCGVSAL*SPVQPW
Trigger: CCAGGGCTGCACGGGACTCCACAGTGCTGAGACTCC...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCAGAGAAGGCTTCTACTaGGAGTCTCAGCACTGTGGA +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAREGFY*ESQHCG
Trigger: TCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCT...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTTGCCACTGCCTCGTTaGATGACACTACGGAGACGT +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGLPLPR*MTLRRR
Trigger: ACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGATTGCTGGCTGGGTTaGTCAGTTCCGAGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRDCWLG*SVPSAA
Trigger: CGCAGCACTCGGAACTGACCAACCCAGCCAGCAATC...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCCGAGAGCGTCATGCTaGCACGTACATACCGCCACA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKPRASC*HVHTAT
Trigger: TGTGGCGGTATGTACGTGCCAGCATGACGCTCTCGG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGAGGGGCTGGATCTCATaGCTGAAGAGTTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQRGWIS*LKSSLV
Trigger: GACCAATGAACTCTTCAGTCATGAGATCCAGCCCCT...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTGCTCCCGGAGCTCCTaGGTGGGGGTCCTAGGGGAT +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPCSRSS*VGVLGD
Trigger: ATCCCCTAGGACCCCCACTCAGGAGCTCCGGGAGCA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
CDS-3UTR TCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGTGCCGGCTTTGGCATaGTGTAGCAAGACTCTGCTG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRVPALA*CSKTLL
Trigger: CAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCAC...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTGCCGGCTTTGGCATaGTGTAGCAAGACTCTGCTG +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKVPALA*CSKTLL
Trigger: CAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCAC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGCTGGGCCAACCACCCTaGCAGCCGGAATTCTTGAAT +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLLGQPP*QPEFLN
Trigger: ATTCAAGAATTCCGGCTGTCAGGGTGGTTGGCCCAG...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTGTCCCCATAGGTGCTaGGATCTGTCTCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLCPHRC*DLSHPG
Trigger: GCCAGGATGAGACAGATCTCAGCACCTATGGGGACA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCTCTTCTTCCACCTCTaGGGCAGTGCTAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCLFFHL*GSARAG
Trigger: GCCAGCCCTAGCACTGCCTCAGAGGTGGAAGAAGAG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATCAGGCATCTGCGACTaGGCTGGGAGTCTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRSGICD*AGSLLR
Trigger: CCTCAGGAGACTCCCAGCTCAGTCGCAGATGCCTGA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCGCTGGAAGACCATGTaGCGGCAGAGCTCCAGGAAG +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCRWKTM*RQSSRK
Trigger: CTTCCTGGAGCTCTGCCGGCACATGGTCTTCCAGCG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCTTGAACCACATAGATaGTGGCATCTGGTTGACCGG +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQLEPHR*WHLVDR
Trigger: CCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCAGCCTTGTCAATCATaGGCTGGTACACGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKQPCQS*AGTRAG
Trigger: GCCTGCACGTGTACCAGCGCATGATTGACAAGGCTG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCGTGAGCACCGCCAGTTaGCCCACCAGCTCCCCTGGC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSVSTAS*PTSSPG
Trigger: GCCAGGGGAGCTGGTGGGGCAACTGGCGGTGCTCAC...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGAGATCCGCAGGAAGGTaGAGTCTCTCTGGGCACGTA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKRSAGR*SLSGHV
Trigger: TACGTGCCCAGAGAGACTGCACCTTCCTGCGGATCT...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGTCGCTGTGACGGTCTaGACGCCTGGAGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLVAVTV*TPGENL
Trigger: AAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGAC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGGCAGAAAGCGTCGTTaGCGGAGTGTGGACTTCTCT +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLGRKRR*RSVDFS
Trigger: AGAGAAGTCCACACTCCGGCAACGACGCTTTCTGCC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCCCTGCCCGAGACGCTaGAAGACCATGTGCCGGCAG +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSPCPRR*KTMCRQ
Trigger: CTGCCGGCACATGGTCTTCCAGCGTCTCGGGCAGGG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTTCACAGGCACCCGCTaGCTGCTCCCGGAGCTCCTG +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSFTGTR*LLPELL
Trigger: CAGGAGCTCCGGGAGCAGCCAGCGGGTGCCTGTGAA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
CDS-3UTR CCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTTGTCAATCATGCGCTaGTACACGTGCAGGCAGCCC +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLLSIMR*YTCRQP
Trigger: GGGCTGCCTGCACGTGTACCAGCGCATGATTGACAA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGAAGGTGCAGTCTCTCTaGGCACGTAGTGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQKVQSL*ARSVKM
Trigger: CATCTTCACACTACGTGCCCAGAGAGACTGCACCTT...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCATAGAAGTGGGATTTaGAGATCCGCAGGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGHRSGI*RSAGRC
Trigger: GCACCTTCCTGCGGATCTCCAAATCCCACTTCTATG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCCAGCTGGCCAACAGTaGGTTCCTGGTCCCCCAGGC +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPPAGQQ*VPGPPG
Trigger: GCCTGGGGGACCAGGAACCCACTGTTGGCCAGCTGG...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCAGCTGGCCAACAGTaGGTTCCTGGTCCCCCAGGC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSPAGQQ*VPGPPG
Trigger: GCCTGGGGGACCAGGAACCCACTGTTGGCCAGCTGG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTATGCGAGCAGCCTCTaGCTCCGCCCCCACCCAGCA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSYASSL*LRPHPA
Trigger: TGCTGGGTGGGGGCGGAGCCAGAGGCTGCTCGCATA...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTTTCACAGGCACCCGCTaGCTGCTCCCGGAGCTCCCT +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSFTGTR*LLPELP
Trigger: AGGGAGCTCCGGGAGCAGCCAGCGGGTGCCTGTGAA...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACACGGGAGAAGTCGCTGTaGCGGTCTGCACGCCTGGAG +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTREKSL*RSARLE
Trigger: CTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCG...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCAGGAAGGTGACTCTCTaGAGCCTTACCATGATGATC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGRKVTL*SLTMMI
Trigger: GATCATCATGGTAAGGCTGCAGAGAGTCACCTTCCT...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCTTCACGGGATCCCCTaGAGGTCCAGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSLHGIP*RSRQRS
Trigger: GCTCCTCTGCCTGGACCTGCAGGGGATCCCGTGAAG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGAACGAGGGCCACCTTaGAAGCCTGAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKERGPP*KPEMST
Trigger: AGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCCCCAGAGCACAAAGTaGAGGCTCACATCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCPQSTK*RLTSWS
Trigger: GGACCAGGATGTGAGCCTGCACTTTGTGCTCTGGGG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCGGTCCTTGCAACTGCTaGAGATTGCCTAGAATTTTC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAGPCNC*RLPRIF
Trigger: GAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACC...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGTGTTCTCTAACATTTaGTCCAGCTGGCCAACAGTG +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQVFSNI*SSWPTV
Trigger: CACTGTTGGCCAGCTGGAGCAAATGTTAGAGAACAC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGAGGACAGCGCAGGTaGAGGTGCCCTGAGCACCAG +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSRGQRR*RCPEHQ
Trigger: CTGGTGCTCAGGGCACCTGCACCTGCGCTGTCCTCG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAACCTCAGAGGGTAGGTaGGAATTGGCCAGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRTSEGR*ELARSP
Trigger: GGGAGACCTGGCCAATTCCCACCTACCCTCTGAGGT...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCGGAGTCTCAGCACTGTaGAGTCCCGTGCAGCCCTGG +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSGVSAL*SPVQPW
Trigger: CCAGGGCTGCACGGGACTCCACAGTGCTGAGACTCC...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGATGGCAAAGTCCATCTaGCGCACGAAGGGGGACATT +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKMAKSI*RTKGDI
Trigger: AATGTCCCCCTTCGTGCGCCAGATGGACTTTGCCAT...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGTTGCCACTGCCTCGTTaGATGACACTACGGAGACGT +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKLPLPR*MTLRRR
Trigger: ACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAA...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTTACAGTGGTGGCTCGTaGCTGCCGGGTCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLYSGGS*LPGQCL
Trigger: GAGGCACTGACCCGGCAGCCACGAGCCACCACTGTA...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCTGCGTGTACAGTGGTaGCTCGTGGCTGCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSLRVQW*LVAAGS
Trigger: TGACCCGGCAGCCACGAGCCACCACTGTACACGCAG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCTGCGTGTACAGTGGTaGCTCGTGGCTGCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSLRVQW*LVAAGS
Trigger: TGACCCGGCAGCCACGAGCCACCACTGTACACGCAG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGATTGCTGGCTGGGTTaGTCAGTTCCGAGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCDCWLG*SVPSAA
Trigger: CGCAGCACTCGGAACTGACCAACCCAGCCAGCAATC...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGAGACAGATTGCTGGCTaGGTTGGTCAGTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKRQIAG*VGQFRV
Trigger: CACTCGGAACTGACCAACCCAGCCAGCAATCTGTCT...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGAGACAGATTGCTGGCTaGGTTGGTCAGTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRRQIAG*VGQFRV
Trigger: CACTCGGAACTGACCAACCCAGCCAGCAATCTGTCT...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCAGGATGCAGTCGGCCTaGCGCAGACAACGGACGGTC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSRMQSA*RRQRTV
Trigger: GACCGTCCGTTGTCTGCGCCAGGCCGACTGCATCCT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCTATGCGAGCAGCCTCTaGCTCCGCCCCCACCCAGCA +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSYASSL*LRPHPA
Trigger: TGCTGGGTGGGGGCGGAGCCAGAGGCTGCTCGCATA...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCAGTGAACCCAGAACTTaGGAAGGCAAGTATATCTGC +
Preference number: 4 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRASEPRT*EGKYIC
Trigger: GCAGATATACTTGCCTTCCCAAGTTCTGGGTTCACT...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCAGGTCTCCCTCTGTaGGGTCAGCCTCCAGCACTG +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSPGLPL*GQPPAL
Trigger: CAGTGCTGGAGGCTGACCTCACAGAGGGAGACCTGG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATGCTCAGAAGGCTGTTaGCGCTGTCTCCAGGAACCA +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRCSEGC*RCLQEP
Trigger: TGGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGAGGGGCTGGATCTCATaGCTGAAGAGTTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLRGWIS*LKSSLV
Trigger: GACCAATGAACTCTTCAGTCATGAGATCCAGCCCCT...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGATGCCTCTTCTTaGAGAGAAACAGATATCCGT +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGPDASS*RETDIR
Trigger: ACGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCCAGATGCCTCTTCTTaGAGAGAAACAGATATCCGT +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQPDASS*RETDIR
Trigger: ACGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCTAGGGGATGCTGTCTaGGGTCCCCCAGATGCCTCT +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSLGDAV*GPPDAS
Trigger: AGAGGCATCTGGGGGACCTCAGACAGCATCCCCTAG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAACATCCGCCTGTGGCTaGCTCATCCTCACAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRTSACG*LILTVA
Trigger: AGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGT...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGTGCCGGCTTTGGCATaGTGTAGCAAGACTCTGCTG +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCVPALA*CSKTLL
Trigger: CAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCAC...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGTTCTGGCTTAGCAGATaGATAAGGCGGGTCACAACC +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKFWLSR*IRRVTT
Trigger: GGTTGTGACCCGCCTTATTCATCTGCTAAGCCAGAA...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTAATGCTATCCAGTGCTaGAGCCCCCAGGAGTGCCCG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLNAIQC*SPQECP
Trigger: CGGGCACTCCTGGGGGCTTCAGCACTGGATAGCATT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGACTGGGCCAACCACCCTaGCAGCCGGAATTCTTGAAT +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRLGQPP*QPEFLN
Trigger: ATTCAAGAATTCCGGCTGTCAGGGTGGTTGGCCCAG...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCGCTGGGCTGCGCCGTaGGAAGAGGCGGCGAGGACA +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCRWAAP*EEAART
Trigger: TGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCG...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGTGTCTGTGGTCACATTaGAGTAAGGCAGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLCLWSH*SKAATG
Trigger: ACCTGTGGCTGCCTTACTTCAATGTGACCACAGACA...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGTGTCTGTGGTCACATTaGAGTAAGGCAGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKCLWSH*SKAATG
Trigger: ACCTGTGGCTGCCTTACTTCAATGTGACCACAGACA...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCTCTTCTTCCACCTCTaGGGCAGTGCTAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSLFFHL*GSARAG
Trigger: GCCAGCCCTAGCACTGCCTCAGAGGTGGAAGAAGAG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGAGCTGGGAGTCTCCTaGGGCAGAAAGCGTCGTTGC +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSELGVS*GRKRRC
Trigger: GCAACGACGCTTTCTGCCTCAGGAGACTCCCAGCTC...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGAGCTGGGAGTCTCCTaGGGCAGAAAGCGTCGTTGC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSELGVS*GRKRRC
Trigger: GCAACGACGCTTTCTGCCTCAGGAGACTCCCAGCTC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTTCACGGGATCCCCTaGAGGTCCAGGCAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSLHGIP*RSRQRS
Trigger: GCTCCTCTGCCTGGACCTGCAGGGGATCCCGTGAAG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCTGAGGTCCCCCAGATaGCTCTTCTTGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRLRSPR*LFLKRN
Trigger: GTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAAGATCCGCAGGAAGGTaGAGTCTCTCTGGGCACGTA +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRRSAGR*SLSGHV
Trigger: TACGTGCCCAGAGAGACTGCACCTTCCTGCGGATCT...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTACCACACTGGGTTGTaGACGCATGATCTCATAGAA +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGYHTGL*THDLIE
Trigger: TTCTATGAGATCATGCGTGCACAACCCAGTGTGGTA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACATGGCTGCCGGGTCAGTaGCTCCACCACGCCAATGAG +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTWLPGQ*LHHANE
Trigger: CTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCA...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGGTCCTTGCAACTGCTaGAGATTGCCTAGAATTTTC +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQGPCNC*RLPRIF
Trigger: GAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCACAGGTCCTCAATCTaGTTATCCTGGAAGACACGG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRHRSSI*LSWKTR
Trigger: CCGTGTCTTCCAGGATAAGCAGATTGAGGACCTGTG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTAGCACCATTCCGGTTTaGAGTGGGGCCTCCATCGAT +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCSTIPV*SGASID
Trigger: ATCGATGGAGGCCCCACTGCAAACCGGAATGGTGCT...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGATAGATGCTGGCATCTaGTTGACCGGGCCGAAAAAC +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRIDAGI*LTGPKN
Trigger: GTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTAT...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCAATCCGCATCAGCTTaGCTAGCTCTCTCTTTGCAG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRQSASA*LALSLQ
Trigger: CTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTACATCCTGGTCCCCTTaGCGGGCTATGATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLTSWSP*RAMMVP
Trigger: CGGCACCATCATAGCCCGCCAAGGGGACCAGGATGT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGAAGGTGCAGTCTCTCTaGGCACGTAGTGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRKVQSL*ARSVKM
Trigger: CATCTTCACACTACGTGCCCAGAGAGACTGCACCTT...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACATACAGTGGTGGCTCGTaGCTGCCGGGTCAGTGCCTC +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTYSGGS*LPGQCL
Trigger: GAGGCACTGACCCGGCAGCCACGAGCCACCACTGTA...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTGCCCTCGGGAAGCTTaGCCAGCTCAGTGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPCPREA*PAQCLA
Trigger: TGCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTTGCCCTCGGGAAGCTTaGCCAGCTCAGTGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSCPREA*PAQCLA
Trigger: TGCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCA...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAGCGGGTCACAACCTGTaGGTACCGACGTTTGATGTG +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRAGHNL*VPTFDV
Trigger: CACATCAAACGTCGGTACCCACAGGTTGTGACCCGC...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAGGATGCAGTCGGCCTaGCGCAGACAACGGACGGTC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSRMQSA*RRQRTV
Trigger: GACCGTCCGTTGTCTGCGCCAGGCCGACTGCATCCT...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTCCTGGAAGACACGGTaGATACTTCTGTTAAAGGCT +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGSWKTR*ILLLKA
Trigger: AGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGAGATCTGTCTCATCCTaGCTTCCAACGTCGATGGCA +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRRSVSS*LPTSMA
Trigger: TGCCATCGACGTTGGAAGCCAGGATGAGACAGATCT...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTTACGCCAAGCGGGACTaGATCTCAGCCATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCYAKRD*ISAMSG
Trigger: TCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTA...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATACGCCAAGCGGGACTaGATCTCAGCCATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRYAKRD*ISAMSG
Trigger: TCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCAGTGAACCCAGAACTTaGGAAGGCAAGTATATCTGC +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGSEPRT*EGKYIC
Trigger: GCAGATATACTTGCCTTCCCAAGTTCTGGGTTCACT...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
3UTR CAA 72 bp GGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGGAGTGTaGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGC +
Preference number: 4 (lower is better)
Translates to: GPWSQGGRAQGV*KYSSSGNNSVS
Trigger: GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTGGCTCCAAGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGAAGCGCCAGGAAGGTaGCTCTCTGCAGCCTTACCA +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSEAPGR*LSAALP
Trigger: TGGTAAGGCTGCAGAGAGTCACCTTCCTGGCGCTTC...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAATGCTATCCAGTGCTaGAGCCCCCAGGAGTGCCCG +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSNAIQC*SPQECP
Trigger: CGGGCACTCCTGGGGGCTTCAGCACTGGATAGCATT...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGACAGCCGGAATTCTTaGATGCTATCCAGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKDSRNS*MLSSAE
Trigger: TTCAGCACTGGATAGCATTCAAGAATTCCGGCTGTC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCCGCTGGGCTGCGCCGTaGGAAGAGGCGGCGAGGACA +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFRWAAP*EEAART
Trigger: TGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCG...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAAATAGGAGCTGGACTTaGCGACTTCTAGCTGCCGCA +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRNRSWT*RLLAAA
Trigger: TGCGGCAGCTAGAAGTCGTCAAGTCCAGCTCCTATT...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCAGCCTCAAAGATGCTaGTTGTCTGGCGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPQPQRC*LSGGPG
Trigger: ACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTG...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCAGCCTCAAAGATGCTaGTTGTCTGGCGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSQPQRC*LSGGPG
Trigger: ACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGATGTAGCAAGACTCTaGTGTTCAGTAGAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLDVARL*CSVERG
Trigger: ACCCCTCTCTACTGAACAGCAGAGTCTTGCTACATC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCCAGAGCACAAAGTaGAGGCTCACATCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSPQSTK*RLTSWS
Trigger: GGACCAGGATGTGAGCCTGCACTTTGTGCTCTGGGG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGTGGTGGCTCGTGGCTaGCGGGTCAGTGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCVVARG*RVSAST
Trigger: GGTGGAGGCACTGACCCGGCAGCCACGAGCCACCAC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAGCTTGCAGAGCATGCTaGAGTTCCAGAGTAAAGGCC +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRACRAC*SSRVKA
Trigger: GGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGC...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGTTTGGTAGAGCACAATaGGATGGGCATCTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKFGRAQ*DGHLPA
Trigger: AGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAA...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTTTGGTAGAGCACAATaGGATGGGCATCTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRFGRAQ*DGHLPA
Trigger: AGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAA...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGTGTTCTCTAACATTTaGTCCAGCTGGCCAACAGTG +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRVFSNI*SSWPTV
Trigger: CACTGTTGGCCAGCTGGAGCAAATGTTAGAGAACAC...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCCATCCATGAGCAGGTaGCCATCCTTTGGGTCGCAC +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSPSMSR*PSFGSH
Trigger: GTGCGACCCAAAGGATGGGCACCTGCTCATGGATGG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCGTCGGAGTCTCCTTTTaGATACGTAAGATCTTCTTG +
Preference number: 4 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGVGVSF*IRKIFL
Trigger: CAAGAAGATCTTACGTATCCAAAAGGAGACTCCGAC...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGTCGGAGTCTCCTTTTaGATACGTAAGATCTTCTTG +
Preference number: 4 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQVGVSF*IRKIFL
Trigger: CAAGAAGATCTTACGTATCCAAAAGGAGACTCCGAC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCACCTCAGAGGGTAGGTaGGAATTGGCCAGGTCTCCC +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSTSEGR*ELARSP
Trigger: GGGAGACCTGGCCAATTCCCACCTACCCTCTGAGGT...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGATTGCTGGCTGGGTTaGTCAGTTCCGAGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSDCWLG*SVPSAA
Trigger: CGCAGCACTCGGAACTGACCAACCCAGCCAGCAATC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTGATTGCTGGCTGGGTTaGTCAGTTCCGAGTGCTGCG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLDCWLG*SVPSAA
Trigger: CGCAGCACTCGGAACTGACCAACCCAGCCAGCAATC...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAAGACAGATTGCTGGCTaGGTTGGTCAGTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRRQIAG*VGQFRV
Trigger: CACTCGGAACTGACCAACCCAGCCAGCAATCTGTCT...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCACGAACGGCACAGGCTaGGCAACGCATATCCGTCTC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSTNGTG*ATHIRL
Trigger: GAGACGGATATGCGTTGCCCAGCCTGTGCCGTTCGT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCACATCCGCCTGTGGCTaGCTCATCCTCACAGTAGCT +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSTSACG*LILTVA
Trigger: AGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTGTGCCGGCTTTGGCATaGTGTAGCAAGACTCTGCTG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLVPALA*CSKTLL
Trigger: CAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCAC...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATTCTGGCTTAGCAGATaGATAAGGCGGGTCACAACC +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRFWLSR*IRRVTT
Trigger: GGTTGTGACCCGCCTTATTCATCTGCTAAGCCAGAA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATGTCTGTGGTCACATTaGAGTAAGGCAGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRCLWSH*SKAATG
Trigger: ACCTGTGGCTGCCTTACTTCAATGTGACCACAGACA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTGTAGCCACCATCCATaGGCAGGTGCCCATCCTTTG +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSCSHHP*AGAHPL
Trigger: CAAAGGATGGGCACCTGCTCATGGATGGTGGCTACA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTGTAGCCACCATCCATaGGCAGGTGCCCATCCTTTG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSCSHHP*AGAHPL
Trigger: CAAAGGATGGGCACCTGCTCATGGATGGTGGCTACA...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTCAGTTTCTTCTTCATaGGGGGCCGGGAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPSVSSS*GAGKWW
Trigger: CCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTCAGTTTCTTCTTCATaGGGGGCCGGGAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSSVSSS*GAGKWW
Trigger: CCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGA...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGACTGAGGTCCCCCAGATaGCTCTTCTTGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRLRSPR*LFLKRN
Trigger: GTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAG...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAGCCTCAAAGATGCTaGTTGTCTGGCGGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSQPQRC*LSGGPG
Trigger: ACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCCCAGAGCACAAAGTaGAGGCTCACATCCTGGTCC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSPQSTK*RLTSWS
Trigger: GGACCAGGATGTGAGCCTGCACTTTGTGCTCTGGGG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGTACCACACTGGGTTGTaGACGCATGATCTCATAGAA +
Preference number: 4 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRYHTGL*THDLIE
Trigger: TTCTATGAGATCATGCGTGCACAACCCAGTGTGGTA...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGTCGCTGTGACGGTCTaGACGCCTGGAGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPVAVTV*TPGENL
Trigger: AAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGAC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCGTCGCTGTGACGGTCTaGACGCCTGGAGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSVAVTV*TPGENL
Trigger: AAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGAC...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGGGACCCTCCGGGGCTaGAGTTTTCTGCACCCGCAG +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCGTLRG*SFLHPQ
Trigger: CTGCGGGTGCAGAAAACTCCAGCCCCGGAGGGTCCC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTAGATGTCTACTGGCATaGAGATGCAGCGGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCRCLLA*RCSGSV
Trigger: TACTGAGCCGCTGCATCTCCATGCCAGTAGACATCT...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTTGTCAATCATGCGCTaGTACACGTGCAGGCAGCCC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSLSIMR*YTCRQP
Trigger: GGGCTGCCTGCACGTGTACCAGCGCATGATTGACAA...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTTGTCAATCATGCGCTaGTACACGTGCAGGCAGCCC +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSLSIMR*YTCRQP
Trigger: GGGCTGCCTGCACGTGTACCAGCGCATGATTGACAA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCATAGAAGTGGGATTTaGAGATCCGCAGGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCHRSGI*RSAGRC
Trigger: GCACCTTCCTGCGGATCTCCAAATCCCACTTCTATG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGACATAGAAGTGGGATTTaGAGATCCGCAGGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRHRSGI*RSAGRC
Trigger: GCACCTTCCTGCGGATCTCCAAATCCCACTTCTATG...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTACCGACGTTTGATGTaGCCTAAGGTGCCCTCGGGA +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPYRRLM*PKVPSG
Trigger: TCCCGAGGGCACCTTAGGCCACATCAAACGTCGGTA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCGCGGGTCACAACCTGTaGGTACCGACGTTTGATGTG +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSAGHNL*VPTFDV
Trigger: CACATCAAACGTCGGTACCCACAGGTTGTGACCCGC...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGCGGGTCACAACCTGTaGGTACCGACGTTTGATGTG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSAGHNL*VPTFDV
Trigger: CACATCAAACGTCGGTACCCACAGGTTGTGACCCGC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAGACGGTCTGCACGCCTaGAGAAAACCTTCTCATACA +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRDGLHA*RKPSHT
Trigger: TGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTC...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCGAGAGCGTCATGCTaGCACGTACATACCGCCACA +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSPRASC*HVHTAT
Trigger: TGTGGCGGTATGTACGTGCCAGCATGACGCTCTCGG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTAGATCTGTCTCATCCTaGCTTCCAACGTCGATGGCA +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCRSVSS*LPTSMA
Trigger: TGCCATCGACGTTGGAAGCCAGGATGAGACAGATCT...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCAGAGACGTAGCTTGTTaGTGGCTCGATCCGGGACAC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSRDVAC*WLDPGH
Trigger: GTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTTCACAGGCACCCGCTaGCTGCTCCCGGAGCTCCCT +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCFTGTR*LLPELP
Trigger: AGGGAGCTCCGGGAGCAGCCAGCGGGTGCCTGTGAA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTAGCGGCTTCTCAAAGTaGCCTAGCACCCGAACATTC +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLSGFSK*PSTRTF
Trigger: GAATGTTCGGGTGCTAGGTCACTTTGAGAAGCCGCT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCTGCTCAGAAGGCTGTTaGCGCTGTCTCCAGGAACCA +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSCSEGC*RCLQEP
Trigger: TGGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCA...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTCCCGGAGCTCCTaGGTGGGGGTCCTAGGGGAT +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFCSRSS*VGVLGD
Trigger: ATCCCCTAGGACCCCCACTCAGGAGCTCCGGGAGCA...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
CDS-3UTR TCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAACATCCGCCTGTGGCTaGCTCATCCTCACAGTAGCT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTTSACG*LILTVA
Trigger: AGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGT...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACACTGGGCCAACCACCCTaGCAGCCGGAATTCTTGAAT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTLGQPP*QPEFLN
Trigger: ATTCAAGAATTCCGGCTGTCAGGGTGGTTGGCCCAG...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCAAAGTCCATGGTCTTaGAGCAGTCAATGGATGGAC +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCQSPWS*SSQWMD
Trigger: GTCCATCCATTGACTGCTTCAAGACCATGGACTTTG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCTCTTCTTCCACCTCTaGGGCAGTGCTAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPLFFHL*GSARAG
Trigger: GCCAGCCCTAGCACTGCCTCAGAGGTGGAAGAAGAG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAGATCCGCAGGAAGGTaGAGTCTCTCTGGGCACGTA +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSRSAGR*SLSGHV
Trigger: TACGTGCCCAGAGAGACTGCACCTTCCTGCGGATCT...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTGGCTGCCGGGTCAGTaGCTCCACCACGCCAATGAG +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCWLPGQ*LHHANE
Trigger: CTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCCTGGAAAGGGTCCTTaGAACTGCTGCAGATTGCCT +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSPGKGP*NCCRLP
Trigger: AGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTGCTTGCAGAGCATGCTaGAGTTCCAGAGTAAAGGCC +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLACRAC*SSRVKA
Trigger: GGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGC...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCGTGGGACCAATAGCTTaGAGAGCATGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSVGPIA*RACCSS
Trigger: GGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCAC...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGTGGGACCAATAGCTTaGAGAGCATGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPVGPIA*RACCSS
Trigger: GGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCAC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCGTCGCTGTGACGGTCTaGACGCCTGGAGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSVAVTV*TPGENL
Trigger: AAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGAC...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTTGACGACTTCTAGCTaGCGCACACAGGACACGTAC +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSLTTSS*RTQDTY
Trigger: GTACGTGTCCTGTGTGCGGCAGCTAGAAGTCGTCAA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCATGGCAAAGTCCATCTaGCGCACGAAGGGGGACATT +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSMAKSI*RTKGDI
Trigger: AATGTCCCCCTTCGTGCGCCAGATGGACTTTGCCAT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCATGGCAAAGTCCATCTaGCGCACGAAGGGGGACATT +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSMAKSI*RTKGDI
Trigger: AATGTCCCCCTTCGTGCGCCAGATGGACTTTGCCAT...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCAGCTGTCCAGTCAATaGCAAAGTCCATCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSQLSSQ*QSPSGA
Trigger: TGCGCCAGATGGACTTTGCCATTGACTGGACAGCTG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTCAGCTGTCCAGTCAATaGCAAAGTCCATCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLQLSSQ*QSPSGA
Trigger: TGCGCCAGATGGACTTTGCCATTGACTGGACAGCTG...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCAGCTGTCCAGTCAATaGCAAAGTCCATCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSQLSSQ*QSPSGA
Trigger: TGCGCCAGATGGACTTTGCCATTGACTGGACAGCTG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTTGCCACTGCCTCGTTaGATGACACTACGGAGACGT +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPLPLPR*MTLRRR
Trigger: ACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCAGACAGATTGCTGGCTaGGTTGGTCAGTTCCGAGTG +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSRQIAG*VGQFRV
Trigger: CACTCGGAACTGACCAACCCAGCCAGCAATCTGTCT...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCAGGATGCAGTCGGCCTaGCGCAGACAACGGACGGTC +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCRMQSA*RRQRTV
Trigger: GACCGTCCGTTGTCTGCGCCAGGCCGACTGCATCCT...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCCCAGCTGGCCAACAGTaGGTTCCTGGTCCCCCAGGC +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFPAGQQ*VPGPPG
Trigger: GCCTGGGGGACCAGGAACCCACTGTTGGCCAGCTGG...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCGACGTAGCTTGTTGGTaGCTCGATCCGGGACACAAT +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSDVACW*LDPGHN
Trigger: ATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTC...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGAAGCGCCAGGAAGGTaGCTCTCTGCAGCCTTACCA +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPEAPGR*LSAALP
Trigger: TGGTAAGGCTGCAGAGAGTCACCTTCCTGGCGCTTC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCCAGATGCCTCTTCTTaGAGAGAAACAGATATCCGT +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCPDASS*RETDIR
Trigger: ACGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTTTCTGGCTTAGCAGATaGATAAGGCGGGTCACAACC +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLFWLSR*IRRVTT
Trigger: GGTTGTGACCCGCCTTATTCATCTGCTAAGCCAGAA...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTGTCTGTGGTCACATTaGAGTAAGGCAGCCACAGGT +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSCLWSH*SKAATG
Trigger: ACCTGTGGCTGCCTTACTTCAATGTGACCACAGACA...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAATAGGAGCTGGACTTaGCGACTTCTAGCTGCCGCA +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSNRSWT*RLLAAA
Trigger: TGCGGCAGCTAGAAGTCGTCAAGTCCAGCTCCTATT...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTCAGGCATCTGCGACTaGGCTGGGAGTCTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCSGICD*AGSLLR
Trigger: CCTCAGGAGACTCCCAGCTCAGTCGCAGATGCCTGA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCTTGAACCACATAGATaGTGGCATCTGGTTGACCGG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSLEPHR*WHLVDR
Trigger: CCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTCTTGAACCACATAGATaGTGGCATCTGGTTGACCGG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLLEPHR*WHLVDR
Trigger: CCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAG...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAGAACGAGGGCCACCTTaGAAGCCTGAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTERGPP*KPEMST
Trigger: AGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTC...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCTGAGGTCCCCCAGATaGCTCTTCTTGAAGAGAAAC +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSLRSPR*LFLKRN
Trigger: GTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTGGAAAGGGTCCTTaGAACTGCTGCAGATTGCCT +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSPGKGP*NCCRLP
Trigger: AGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCGCTTGCAGAGCATGCTaGAGTTCCAGAGTAAAGGCC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSACRAC*SSRVKA
Trigger: GGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGC...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTCACAGGTCCTCAATCTaGTTATCCTGGAAGACACGG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLHRSSI*LSWKTR
Trigger: CCGTGTCTTCCAGGATAAGCAGATTGAGGACCTGTG...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCACAGGTCCTCAATCTaGTTATCCTGGAAGACACGG +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSHRSSI*LSWKTR
Trigger: CCGTGTCTTCCAGGATAAGCAGATTGAGGACCTGTG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCATCCATGAGCAGGTaGCCATCCTTTGGGTCGCAC +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPPSMSR*PSFGSH
Trigger: GTGCGACCCAAAGGATGGGCACCTGCTCATGGATGG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTATAGATGCTGGCATCTaGTTGACCGGGCCGAAAAAC +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSIDAGI*LTGPKN
Trigger: GTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTAT...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCATAGATGCTGGCATCTaGTTGACCGGGCCGAAAAAC +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPIDAGI*LTGPKN
Trigger: GTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTAT...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTAGAGAAGGCTTCTACTaGGAGTCTCAGCACTGTGGA +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLREGFY*ESQHCG
Trigger: TCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTAGAGAAGGCTTCTACTaGGAGTCTCAGCACTGTGGA +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSREGFY*ESQHCG
Trigger: TCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCT...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAGATGTCTACTGGCATaGAGATGCAGCGGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPRCLLA*RCSGSV
Trigger: TACTGAGCCGCTGCATCTCCATGCCAGTAGACATCT...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCAGATGTCTACTGGCATaGAGATGCAGCGGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSRCLLA*RCSGSV
Trigger: TACTGAGCCGCTGCATCTCCATGCCAGTAGACATCT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTAGATGTCTACTGGCATaGAGATGCAGCGGCTCAGTA +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSRCLLA*RCSGSV
Trigger: TACTGAGCCGCTGCATCTCCATGCCAGTAGACATCT...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCAATCCGCATCAGCTTaGCTAGCTCTCTCTTTGCAG +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSQSASA*LALSLQ
Trigger: CTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTCAATCCGCATCAGCTTaGCTAGCTCTCTCTTTGCAG +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLQSASA*LALSLQ
Trigger: CTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTG...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAAGGTGCAGTCTCTCTaGGCACGTAGTGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPKVQSL*ARSVKM
Trigger: CATCTTCACACTACGTGCCCAGAGAGACTGCACCTT...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCAAGGTGCAGTCTCTCTaGGCACGTAGTGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSKVQSL*ARSVKM
Trigger: CATCTTCACACTACGTGCCCAGAGAGACTGCACCTT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCATAGAAGTGGGATTTaGAGATCCGCAGGAAGGTGC +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSHRSGI*RSAGRC
Trigger: GCACCTTCCTGCGGATCTCCAAATCCCACTTCTATG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAATGGCAAAGTCCATCTaGCGCACGAAGGGGGACATT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTMAKSI*RTKGDI
Trigger: AATGTCCCCCTTCGTGCGCCAGATGGACTTTGCCAT...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAGCTGTCCAGTCAATaGCAAAGTCCATCTGGCGCA +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSQLSSQ*QSPSGA
Trigger: TGCGCCAGATGGACTTTGCCATTGACTGGACAGCTG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCCTGCGTGTACAGTGGTaGCTCGTGGCTGCCGGGTCA +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFLRVQW*LVAAGS
Trigger: TGACCCGGCAGCCACGAGCCACCACTGTACACGCAG...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGACGGTCTGCACGCCTaGAGAAAACCTTCTCATACA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSDGLHA*RKPSHT
Trigger: TGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGACGGTCTGCACGCCTaGAGAAAACCTTCTCATACA +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSDGLHA*RKPSHT
Trigger: TGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTC...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGACGGTCTGCACGCCTaGAGAAAACCTTCTCATACA +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPDGLHA*RKPSHT
Trigger: TGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTTCCTGGAAGACACGGTaGATACTTCTGTTAAAGGCT +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCSWKTR*ILLLKA
Trigger: AGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGA...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCAGATCTGTCTCATCCTaGCTTCCAACGTCGATGGCA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSRSVSS*LPTSMA
Trigger: TGCCATCGACGTTGGAAGCCAGGATGAGACAGATCT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAGACGTAGCTTGTTGGTaGCTCGATCCGGGACACAAT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTDVACW*LDPGHN
Trigger: ATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTC...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAGGGGCTGGATCTCATaGCTGAAGAGTTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSRGWIS*LKSSLV
Trigger: GACCAATGAACTCTTCAGTCATGAGATCCAGCCCCT...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCAATGCTATCCAGTGCTaGAGCCCCCAGGAGTGCCCG +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFNAIQC*SPQECP
Trigger: CGGGCACTCCTGGGGGCTTCAGCACTGGATAGCATT...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGACAGCCGGAATTCTTaGATGCTATCCAGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPDSRNS*MLSSAE
Trigger: TTCAGCACTGGATAGCATTCAAGAATTCCGGCTGTC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGACAGCCGGAATTCTTaGATGCTATCCAGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSDSRNS*MLSSAE
Trigger: TTCAGCACTGGATAGCATTCAAGAATTCCGGCTGTC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTTGTCCCCATAGGTGCTaGGATCTGTCTCATCCTGGC +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPCPHRC*DLSHPG
Trigger: GCCAGGATGAGACAGATCTCAGCACCTATGGGGACA...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCAAAGTCCATGGTCTTaGAGCAGTCAATGGATGGAC +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSQSPWS*SSQWMD
Trigger: GTCCATCCATTGACTGCTTCAAGACCATGGACTTTG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTAGGAAGGTGACTCTCTaGAGCCTTACCATGATGATC +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLRKVTL*SLTMMI
Trigger: GATCATCATGGTAAGGCTGCAGAGAGTCACCTTCCT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGATGTAGCAAGACTCTaGTGTTCAGTAGAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSDVARL*CSVERG
Trigger: ACCCCTCTCTACTGAACAGCAGAGTCTTGCTACATC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGATGTAGCAAGACTCTaGTGTTCAGTAGAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPDVARL*CSVERG
Trigger: ACCCCTCTCTACTGAACAGCAGAGTCTTGCTACATC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCAGCCTTGTCAATCATaGGCTGGTACACGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPQPCQS*AGTRAG
Trigger: GCCTGCACGTGTACCAGCGCATGATTGACAAGGCTG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAGATCCGCAGGAAGGTaGAGTCTCTCTGGGCACGTA +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPRSAGR*SLSGHV
Trigger: TACGTGCCCAGAGAGACTGCACCTTCCTGCGGATCT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCGTGTTCTCTAACATTTaGTCCAGCTGGCCAACAGTG +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSVFSNI*SSWPTV
Trigger: CACTGTTGGCCAGCTGGAGCAAATGTTAGAGAACAC...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGGCAGAAAGCGTCGTTaGCGGAGTGTGGACTTCTCT +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPGRKRR*RSVDFS
Trigger: AGAGAAGTCCACACTCCGGCAACGACGCTTTCTGCC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGTCGGAGTCTCCTTTTaGATACGTAAGATCTTCTTG +
Preference number: 4 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCVGVSF*IRKIFL
Trigger: CAAGAAGATCTTACGTATCCAAAAGGAGACTCCGAC...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAATAGATGCTGGCATCTaGTTGACCGGGCCGAAAAAC +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTIDAGI*LTGPKN
Trigger: GTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTAT...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAATCCGCATCAGCTTaGCTAGCTCTCTCTTTGCAG +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSQSASA*LALSLQ
Trigger: CTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCACATCCTGGTCCCCTTaGCGGGCTATGATGGTGCCG +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFTSWSP*RAMMVP
Trigger: CGGCACCATCATAGCCCGCCAAGGGGACCAGGATGT...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGATCAATCTGCTTATCCTaGAAGACACGGTGGATACTT +
Preference number: 4 (lower is better)
Translates to: SPTSSPITQSRNRASLSRSICLS*KTRWIL
Trigger: AAGTATCCACCGTGTCTTCCAGGATAAGCAGATTGA...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTTACGCCAAGCGGGACTaGATCTCAGCCATGTCTGGA +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPYAKRD*ISAMSG
Trigger: TCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTA...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAGAGACGTAGCTTGTTaGTGGCTCGATCCGGGACAC +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPRDVAC*WLDPGH
Trigger: GTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTGCTCAGAAGGCTGTTaGCGCTGTCTCCAGGAACCA +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCCSEGC*RCLQEP
Trigger: TGGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCGAAGCGCCAGGAAGGTaGCTCTCTGCAGCCTTACCA +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFEAPGR*LSAALP
Trigger: TGGTAAGGCTGCAGAGAGTCACCTTCCTGGCGCTTC...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTGTAGCCACCATCCATaGGCAGGTGCCCATCCTTTG +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCCSHHP*AGAHPL
Trigger: CAAAGGATGGGCACCTGCTCATGGATGGTGGCTACA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAATAGGAGCTGGACTTaGCGACTTCTAGCTGCCGCA +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPNRSWT*RLLAAA
Trigger: TGCGGCAGCTAGAAGTCGTCAAGTCCAGCTCCTATT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAAAGTCCATGGTCTTaGAGCAGTCAATGGATGGAC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSQSPWS*SSQWMD
Trigger: GTCCATCCATTGACTGCTTCAAGACCATGGACTTTG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTCAGTTTCTTCTTCATaGGGGGCCGGGAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCSVSSS*GAGKWW
Trigger: CCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAGGAAGGTGACTCTCTaGAGCCTTACCATGATGATC +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSRKVTL*SLTMMI
Trigger: GATCATCATGGTAAGGCTGCAGAGAGTCACCTTCCT...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAAGGAAGGTGACTCTCTaGAGCCTTACCATGATGATC +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTRKVTL*SLTMMI
Trigger: GATCATCATGGTAAGGCTGCAGAGAGTCACCTTCCT...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGAACGAGGGCCACCTTaGAAGCCTGAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPERGPP*KPEMST
Trigger: AGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACAGATGTAGCAAGACTCTaGTGTTCAGTAGAGAGGGGT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTDVARL*CSVERG
Trigger: ACCCCTCTCTACTGAACAGCAGAGTCTTGCTACATC...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTACCACACTGGGTTGTaGACGCATGATCTCATAGAA +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSYHTGL*THDLIE
Trigger: TTCTATGAGATCATGCGTGCACAACCCAGTGTGGTA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTTACCACACTGGGTTGTaGACGCATGATCTCATAGAA +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLYHTGL*THDLIE
Trigger: TTCTATGAGATCATGCGTGCACAACCCAGTGTGGTA...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTAAGGGTCCTTGCAACTaGTGCAGATTGCCTAGAATT +
Preference number: 4 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLKGPCN*CRLPRI
Trigger: AATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTT...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCTTTGGTAGAGCACAATaGGATGGGCATCTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSFGRAQ*DGHLPA
Trigger: AGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAA...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTGGAAGACACGGTaGATACTTCTGTTAAAGGCT +
Preference number: 4 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSSWKTR*ILLLKA
Trigger: AGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTAGTGAACCCAGAACTTaGGAAGGCAAGTATATCTGC +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSSEPRT*EGKYIC
Trigger: GCAGATATACTTGCCTTCCCAAGTTCTGGGTTCACT...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGTCGTTGCCGGAGTGTaGACTTCTCTTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPVVAGV*TSLLPP
Trigger: AGGTGGAAGAAGAGAAGTCCACACTCCGGCAACGAC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCTTGAACCACATAGATaGTGGCATCTGGTTGACCGG +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPLEPHR*WHLVDR
Trigger: CCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGAACGAGGGCCACCTTaGAAGCCTGAGATGTCTACT +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCERGPP*KPEMST
Trigger: AGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGGAAAGGGTCCTTaGAACTGCTGCAGATTGCCT +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCPGKGP*NCCRLP
Trigger: AGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGG...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGTGGGACCAATAGCTTaGAGAGCATGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCVGPIA*RACCSS
Trigger: GGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCAC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTTGACGACTTCTAGCTaGCGCACACAGGACACGTAC +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCLTTSS*RTQDTY
Trigger: GTACGTGTCCTGTGTGCGGCAGCTAGAAGTCGTCAA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCTCCTGGAAGACACGGTaGATACTTCTGTTAAAGGCT +
Preference number: 4 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSSWKTR*ILLLKA
Trigger: AGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGA...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTTCAATCTGCTTATCCTaGAAGACACGGTGGATACTT +
Preference number: 4 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSSICLS*KTRWIL
Trigger: AAGTATCCACCGTGTCTTCCAGGATAAGCAGATTGA...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCAGGGGCTGGATCTCATaGCTGAAGAGTTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCRGWIS*LKSSLV
Trigger: GACCAATGAACTCTTCAGTCATGAGATCCAGCCCCT...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCTTCTGGCTTAGCAGATaGATAAGGCGGGTCACAACC +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCFWLSR*IRRVTT
Trigger: GGTTGTGACCCGCCTTATTCATCTGCTAAGCCAGAA...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGACAGCCGGAATTCTTaGATGCTATCCAGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPDSRNS*MLSSAE
Trigger: TTCAGCACTGGATAGCATTCAAGAATTCCGGCTGTC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCGTGGGACCAATAGCTTaGAGAGCATGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFVGPIA*RACCSS
Trigger: GGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCAC...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTTGACGACTTCTAGCTaGCGCACACAGGACACGTAC +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFLTTSS*RTQDTY
Trigger: GTACGTGTCCTGTGTGCGGCAGCTAGAAGTCGTCAA...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCAGAGAAGGCTTCTACTaGGAGTCTCAGCACTGTGGA +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCREGFY*ESQHCG
Trigger: TCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCT...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTTGCCACTGCCTCGTTaGATGACACTACGGAGACGT +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFLPLPR*MTLRRR
Trigger: ACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAA...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACATCAATCTGCTTATCCTaGAAGACACGGTGGATACTT +
Preference number: 4 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTSICLS*KTRWIL
Trigger: AAGTATCCACCGTGTCTTCCAGGATAAGCAGATTGA...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCGTCGTTGCCGGAGTGTaGACTTCTCTTCTTCCACCT +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFVVAGV*TSLLPP
Trigger: AGGTGGAAGAAGAGAAGTCCACACTCCGGCAACGAC...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCAGATGCCTCTTCTTaGAGAGAAACAGATATCCGT +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPPDASS*RETDIR
Trigger: ACGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAAGGGTCCTTGCAACTaGTGCAGATTGCCTAGAATT +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPKGPCN*CRLPRI
Trigger: AATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGTGTTCTCTAACATTTaGTCCAGCTGGCCAACAGTG +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCVFSNI*SSWPTV
Trigger: CACTGTTGGCCAGCTGGAGCAAATGTTAGAGAACAC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR TCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCCAAAGTCCATGGTCTTaGAGCAGTCAATGGATGGAC +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFQSPWS*SSQWMD
Trigger: GTCCATCCATTGACTGCTTCAAGACCATGGACTTTG...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCAAGGGTCCTTGCAACTaGTGCAGATTGCCTAGAATT +
Preference number: 4 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCKGPCN*CRLPRI
Trigger: AATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTT...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTTTGGTAGAGCACAATaGGATGGGCATCTTCCTGCT +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFFGRAQ*DGHLPA
Trigger: AGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAA...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGTCGGAGTCTCCTTTTaGATACGTAAGATCTTCTTG +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPVGVSF*IRKIFL
Trigger: CAAGAAGATCTTACGTATCCAAAAGGAGACTCCGAC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CCA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTTCAATCTGCTTATCCTaGAAGACACGGTGGATACTT +
Preference number: 4 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPSICLS*KTRWIL
Trigger: AAGTATCCACCGTGTCTTCCAGGATAAGCAGATTGA...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR GCA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCGGTCCTTGCAACTGCTaGAGATTGCCTAGAATTTTC +
Preference number: 4 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFGPCNC*RLPRIF
Trigger: GAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACC...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp GTGACCAGCACCGCCACTCCGGCCCCGATCATCACGCCCAGCACCTaGGGAACGAACGGCACAGGCTGGGCAACGCATATCCGTCTCCCC +
Preference number: 5 (lower is better)
Translates to: VTSTATPAPIITPST*GTNGTGWATHIRLP
Trigger: GGGGAGACGGATATGCGTTGCCCAGCCTGTGCCGTTCGTTCCGCAGGTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGTGCTGGTCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS-3UTR CAA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCGTGCCCTCGGGAAGCTaGGCCAGCTCAGTGTCTCGC +
Preference number: 5 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAVPSGS*ASSVSR
Trigger: GCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCAC...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp GCCAGCTCAGTGTCTCGCACTGCGTGTACAGTGGTGGCTCGTGGCTaGCGGGTCAGTGCCTCCACCACGCCAATGAGATCCCCTCGACCA +
Preference number: 5 (lower is better)
Translates to: ASSVSRTACTVVARG*RVSASTTPMRSPRP
Trigger: TGGTCGAGGGGATCTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACACTGAGCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp TGGGCTTCACGGGATCCCCTGCAGGTCCAGGCAGAGGAGCTCCAATaGAGTCCAGGGGCCGGCCAGAGGTCTCCTTTGAGGTGTCCTCAG +
Preference number: 5 (lower is better)
Translates to: WASRDPLQVQAEELQ*SPGAGQRSPLRCPQ
Trigger: CTGAGGACACCTCAAAGGAGACCTCTGGCCGGCCCCTGGACTCCATTGGAGCTCCTCTGCCTGGACCTGCAGGGGATCCCGTGAAGCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp CTTGGCCAGCTCAGTGTCTCGCACTGCGTGTACAGTGGTGGCTCGTaGCTGCCGGGTCAGTGCCTCCACCACGCCAATGAGATCCCCTCG +
Preference number: 5 (lower is better)
Translates to: LGQLSVSHCVYSGGS*LPGQCLHHANEIPS
Trigger: CGAGGGGATCTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACACTGAGCTGGCCAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp GCCCCGATCATCACGCCCAGCACCTGCGGAACGAACGGCACAGGCTaGGCAACGCATATCCGTCTCCCCAAGCCCTCCTCCAGGGTCTTT +
Preference number: 5 (lower is better)
Translates to: APIITPSTCGTNGTG*ATHIRLPKPSSRVF
Trigger: AAAGACCCTGGAGGAGGGCTTGGGGAGACGGATATGCGTTGCCCAGCCTGTGCCGTTCGTTCCGCAGGTGCTGGGCGTGATGATCGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS-3UTR CAA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCACATCCTGGTCCCCTaGGCGGGCTATGATGGTGCC +
Preference number: 5 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAHILVP*AGYDGA
Trigger: GGCACCATCATAGCCCGCCAAGGGGACCAGGATGTG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp GTCTCGCACTGCGTGTACAGTGGTGGCTCGTGGCTGCCGGGTCAGTaGCTCCACCACGCCAATGAGATCCCCTCGACCATACTCCCCAAC +
Preference number: 5 (lower is better)
Translates to: VSHCVYSGGSWLPGQ*LHHANEIPSTILPN
Trigger: GTTGGGGAGTATGGTCGAGGGGATCTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCTTGCCACTGCCTCGTaGGATGACACTACGGAGACG +
Preference number: 5 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRALATAS*DDTTET
Trigger: CGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAG...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGTGCCCTCGGGAAGCTaGGCCAGCTCAGTGTCTCGC +
Preference number: 5 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLVPSGS*ASSVSR
Trigger: GCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCAC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp TGTCTGGCGGCCCTGGTAGGGCCCAAAGGGACATCCGCCTGTGGCTaGCTCATCCTCACAGTAGCTATATTCACAGGCACCCGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: CLAALVGPKGTSACG*LILTVAIFTGTRWL
Trigger: CAGCCAGCGGGTGCCTGTGAATATAGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp ACCGCCACTCCGGCCCCGATCATCACGCCCAGCACCATTCCGGTTTaGAGTGGGGCCTCCATCGATTGTTTCGGACTAGGTAGCAGGTCT +
Preference number: 5 (lower is better)
Translates to: TATPAPIITPSTIPV*SGASIDCFGLGSRS
Trigger: AGACCTGCTACCTAGTCCGAAACAATCGATGGAGGCCCCACTGCAAACCGGAATGGTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000207146.2
ENSMUST00000208002.2
ENSMUST00000208310.2
ENSMUST00000208762.2
CDS-3UTR CAA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCATGCTCAGAAGGCTGTaGACGCTGTCTCCAGGAACC +
Preference number: 5 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRAMLRRL*TLSPGT
Trigger: GGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCAT...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGAGATTGCTGGCTGGGTaGGTCAGTTCCGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQRLLAG*VSSECC
Trigger: GCAGCACTCGGAACTGACCAACCCAGCCAGCAATCT...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCAGATTGCTGGCTGGGTaGGTCAGTTCCGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGRLLAG*VSSECC
Trigger: GCAGCACTCGGAACTGACCAACCCAGCCAGCAATCT...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCAGCCCCCTTCATCTCTaGAGCAGTCTGGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRASPLHL*SSLVLH
Trigger: ATGCAGGACCAGACTGCTCAAGAGATGAAGGGGGCT...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp TCCGCATCAGCTTGGCTAGCTCTCTCTTTGCAGCCTCAAAGATGCTaGTTGTCTGGCGGCCCTGGTAGGGCCCAAAGGGACATCCGCCTG +
Preference number: 5 (lower is better)
Translates to: SASAWLALSLQPQRC*LSGGPGRAQRDIRL
Trigger: CAGGCGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp TGCTTGTCTGGCGGCCCTGGTAGGGCCCAAAGGGACATCCGCCTGTaGCTGACTCATCCTCACAGTAGCTATATTCACAGGCACCCGCTG +
Preference number: 5 (lower is better)
Translates to: CLSGGPGRAQRDIRL*LTHPHSSYIHRHPL
Trigger: CAGCGGGTGCCTGTGAATATAGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGGGTAGGTGGGAATaGGCCAGGTCTCCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLEGRWE*ARSPSV
Trigger: CACAGAGGGAGACCTGGCCAATTCCCACCTACCCTC...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCTCCAGCAGCCCATCTaGAACCACATAGATGCTGGC +
Preference number: 5 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQLQQPI*NHIDAG
Trigger: GCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGCCAACTAGCTCCTTCTaGCCACTGCCTCGTTGGATG +
Preference number: 5 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQPTSSF*PLPRWM
Trigger: CATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGG...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAACTAGCTCCTTCTaGCCACTGCCTCGTTGGATG +
Preference number: 5 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGPTSSF*PLPRWM
Trigger: CATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCACCAGCTGCGCATGTaGAGCCACTCTACAGTGCGC +
Preference number: 5 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRHQLRM*SHSTVR
Trigger: GCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCACCAGCTGCGCATGTaGAGCCACTCTACAGTGCGC +
Preference number: 5 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKHQLRM*SHSTVR
Trigger: GCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCTCTGGAACCTTTACCTaGTCTGCCCAGGGGTTTAGC +
Preference number: 5 (lower is better)
Translates to: GTGQVSPVCGPWSQGGRASGTFT*SAQGFS
Trigger: GCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGA...GGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp AACGAGGGCCACCTTGCAAGCCTGAGATGTCTACTGGCATGGAGATaGAGCGGCTCAGTAACGGGGCTGGGGGTGCTTCTAAGGATGTGG +
Preference number: 5 (lower is better)
Translates to: NEGHLASLRCLLAWR*SGSVTGLGVLLRMW
Trigger: CCACATCCTTAGAAGCACCCCCAGCCCCGTTACTGAGCCGCTGCATCTCCATGCCAGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp CAATCCGCATCAGCTTGGCTAGCTCTCTCTTTGCAGCCTCAAAGATaGTGCTTGTCTGGCGGCCCTGGTAGGGCCCAAAGGGACATCCGC +
Preference number: 5 (lower is better)
Translates to: QSASAWLALSLQPQR*CLSGGPGRAQRDIR
Trigger: GCGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp GCTACAGTAGACAGATTGCTGGCTGGGTTGGTCAGTTCCGAGTGCTaGGGAACACTGAGCCCGGAGCCTGGAAAGGGTCCTTGCAACTGC +
Preference number: 5 (lower is better)
Translates to: ATVDRLLAGLVSSEC*GTLSPEPGKGPCNC
Trigger: GCAGTTGCAAGGACCCTTTCCAGGCTCCGGGCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp GTGCGCGTGGGACCAGGGCCTTCCTCCCGGTGCAGCAAAACCAGTTaGTTCAAGGCACGGACAGCAGTGTTCTCTAACATTTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: VRVGPGPSSRCSKTS*FKARTAVFSNICSS
Trigger: GCTGGAGCAAATGTTAGAGAACACTGCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCACCGGGAGGAAGGCCCTGGTCCCACGCGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp GCAGAGCTCCAGCAGCCCATCTTGAACCACATAGATGCTGGCATCTaGTTGACCGGGCCGAAAAACATAGTCCCCCTGCCCGAGACGCTG +
Preference number: 5 (lower is better)
Translates to: AELQQPILNHIDAGI*LTGPKNIVPLPETL
Trigger: CAGCGTCTCGGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAGCTCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp CTCAGCACACACAGGGAGGATAGCTACAGTAGACAGATTGCTGGCTaGGTTGGTCAGTTCCGAGTGCTGCGGAACACTGAGCCCGGAGCC +
Preference number: 5 (lower is better)
Translates to: LSTHREDSYSRQIAG*VGQFRVLRNTEPGA
Trigger: GGCTCCGGGCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGCTATCCTCCCTGTGTGTGCTGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp ACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAGGATGCTGGCATCTGGTaGACCGGGCCGAAAAACATA +
Preference number: 5 (lower is better)
Translates to: TGQVSPVCGPWSQGGRAQDAGIW*TGPKNI
Trigger: TATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATC...CTGGGCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTGGCTAGCTCTCTCTTaGCAGCCTCAAAGATGCTGC +
Preference number: 5 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGWLALS*QPQRCC
Trigger: GCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCACATCCTGGTCCCCTaGGCGGGCTATGATGGTGCC +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCHILVP*AGYDGA
Trigger: GGCACCATCATAGCCCGCCAAGGGGACCAGGATGTG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGACACATCCTGGTCCCCTaGGCGGGCTATGATGGTGCC +
Preference number: 5 (lower is better)
Translates to: SPTSSPITQSRNRASLSRHILVP*AGYDGA
Trigger: GGCACCATCATAGCCCGCCAAGGGGACCAGGATGTG...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCACACTTCCTCAGCCTaGTCAATCATGCGCTGGTAC +
Preference number: 5 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGHTSSA*SIMRWY
Trigger: GTACCAGCGCATGATTGACAAGGCTGAGGAAGTGTG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCTTGCCACTGCCTCGTaGGATGACACTACGGAGACG +
Preference number: 5 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKLATAS*DDTTET
Trigger: CGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGCTTGCCACTGCCTCGTaGGATGACACTACGGAGACG +
Preference number: 5 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLLATAS*DDTTET
Trigger: CGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAG...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCCACTCCCGGGCTCGTaGTTTAGTTCGGCTGGCGCT +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCPLPGS*FSSAGA
Trigger: AGCGCCAGCCGAACTAAACAACGAGCCCGGGAGTGG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp GGCAGTGCTAGGGCTGGCACCCTCAGGGGAGCCCCCTTCATCTCTTaGGCAGTCTGGTCCTGCATCTTCCTCATACTCTGTCAAGCAATC +
Preference number: 5 (lower is better)
Translates to: GSARAGTLRGAPFIS*AVWSCIFLILCQAI
Trigger: GATTGCTTGACAGAGTATGAGGAAGATGCAGGACCAGACTGCTCAAGAGATGAAGGGGGCTCCCCTGAGGGTGCCAGCCCTAGCACTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp CTGGTAGGCAGAGCTCCAGCAGCCCATCTTGAACCACATAGATGCTaGCATCTGGTTGACCGGGCCGAAAAACATAGTCCCCCTGCCCGA +
Preference number: 5 (lower is better)
Translates to: LVGRAPAAHLEPHRC*HLVDRAEKHSPPAR
Trigger: TCGGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAGCTCTGCCTACCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp AATCAGAACGAGGGCCACCTTGCAAGCCTGAGATGTCTACTGGCATaGAGATGCAGCGGCTCAGTAACGGGGCTGGGGGTGCTTCTAAGG +
Preference number: 5 (lower is better)
Translates to: NQNEGHLASLRCLLA*RCSGSVTGLGVLLR
Trigger: CCTTAGAAGCACCCCCAGCCCCGTTACTGAGCCGCTGCATCTCCATGCCAGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTCTGATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGCCAACTAGCTCCTTCTaGCCACTGCCTCGTTGGATG +
Preference number: 5 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKPTSSF*PLPRWM
Trigger: CATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGG...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTGTGCCCTCGGGAAGCTaGGCCAGCTCAGTGTCTCGC +
Preference number: 5 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLVPSGS*ASSVSR
Trigger: GCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCAC...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTCACCAGCTGCGCATGTaGAGCCACTCTACAGTGCGC +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCHQLRM*SHSTVR
Trigger: GCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTG...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGAGCCCCCTTCATCTCTaGAGCAGTCTGGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: QFCPPLRDRASQSSVWSLSPLHL*SSLVLH
Trigger: ATGCAGGACCAGACTGCTCAAGAGATGAAGGGGGCT...CAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp AAGTCCATCTGGCGCACGAAGGGGGACATTCTAGCAGCCACCGTGTaGGCTGCACTCAGTACCACACTGGGTTGTGCACGCATGATCTCA +
Preference number: 5 (lower is better)
Translates to: KSIWRTKGDILAATV*AALSTTLGCARMIS
Trigger: TGAGATCATGCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTGGCTGCTAGAATGTCCCCCTTCGTGCGCCAGATGGACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp AATAGGCACACTTCCTCAGCCTTGTCAATCATGCGCTGGTACACGTaGAGGCAGCCCCAGAGCACAAAGTGCAGGCTCACATCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: NRHTSSALSIMRWYT*RQPQSTKCRLTSWS
Trigger: GGACCAGGATGTGAGCCTGCACTTTGTGCTCTGGGGCTGCCTGCACGTGTACCAGCGCATGATTGACAAGGCTGAGGAAGTGTGCCTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp GTACTCGTGCCAAGCGGGAGAAGTCGCTGTGACGGTCTGCACGCCTaGAGAAAACCTTCTCATACAGCTCATGAAGTTTCGCTGGGCTGC +
Preference number: 5 (lower is better)
Translates to: VLVPSGRSRCDGLHA*RKPSHTAHEVSLGC
Trigger: GCAGCCCAGCGAAACTTCATGAGCTGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCGCTTGGCACGAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CTTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGATGCTGGCATCTGGTaGACCGGGCCGAAAAACATA +
Preference number: 5 (lower is better)
Translates to: LRDRASQSSVWSLEPRGKDAGIW*TGPKNI
Trigger: TATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATC...CTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCACATCCTGGTCCCCTaGGCGGGCTATGATGGTGCC +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPHILVP*AGYDGA
Trigger: GGCACCATCATAGCCCGCCAAGGGGACCAGGATGTG...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCACACTTCCTCAGCCTaGTCAATCATGCGCTGGTAC +
Preference number: 5 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRHTSSA*SIMRWY
Trigger: GTACCAGCGCATGATTGACAAGGCTGAGGAAGTGTG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCCACTCCCGGGCTCGTaGTTTAGTTCGGCTGGCGCT +
Preference number: 5 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSPLPGS*FSSAGA
Trigger: AGCGCCAGCCGAACTAAACAACGAGCCCGGGAGTGG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCACTCCCGGGCTCGTaGTTTAGTTCGGCTGGCGCT +
Preference number: 5 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSPLPGS*FSSAGA
Trigger: AGCGCCAGCCGAACTAAACAACGAGCCCGGGAGTGG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCCCAAAGTCCATGGTCTaGAAGCAGTCAATGGATGGA +
Preference number: 5 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGPKSMV*KQSMDG
Trigger: TCCATCCATTGACTGCTTCAAGACCATGGACTTTGG...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp ACATCCTGGTCCCCTTGGCGGGCTATGATGGTGCCGGCTTTGGCATaGTGTAGCAAGACTCTGCTGTTCAGTAGAGAGGGGTCCTCAATC +
Preference number: 5 (lower is better)
Translates to: TSWSPWRAMMVPALA*CSKTLLFSREGSSI
Trigger: GATTGAGGACCCCTCTCTACTGAACAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCACCATCATAGCCCGCCAAGGGGACCAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp CATCTGGCGCACGAAGGGGGACATTCTAGCAGCCACCGTGTGAGCTaGACTCAGTACCACACTGGGTTGTGCACGCATGATCTCATAGAA +
Preference number: 5 (lower is better)
Translates to: HLAHEGGHSSSHRVS*TQYHTGLCTHDLIE
Trigger: TTCTATGAGATCATGCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTGGCTGCTAGAATGTCCCCCTTCGTGCGCCAGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 90 bp TGTGCCACAAATAGGCACACTTCCTCAGCCTTGTCAATCATGCGCTaGTACACGTGCAGGCAGCCCCAGAGCACAAAGTGCAGGCTCACA +
Preference number: 5 (lower is better)
Translates to: CATNRHTSSALSIMR*YTCRQPQSTKCRLT
Trigger: TGTGAGCCTGCACTTTGTGCTCTGGGGCTGCCTGCACGTGTACCAGCGCATGATTGACAAGGCTGAGGAAGTGTGCCTATTTGTGGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTATGCTCAGAAGGCTGTaGACGCTGTCTCCAGGAACC +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCMLRRL*TLSPGT
Trigger: GGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCAT...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAATGCTCAGAAGGCTGTaGACGCTGTCTCCAGGAACC +
Preference number: 5 (lower is better)
Translates to: SPTSSPITQSRNRASLSRMLRRL*TLSPGT
Trigger: GGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCAT...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGGCTGCAACTGCTGCAGATaGCCTAGAATTTTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: RDRASQSSVWSLEPRGKGCNCCR*PRIFWL
Trigger: AAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCA...GCCCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCAGGGATGTGTCAGTTaGGTAGAGCACAATGCGATG +
Preference number: 5 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRQGCVS*VEHNAM
Trigger: CATCGCATTGTGCTCTACCAAACTGACACATCCCTG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGAGTGCAGCAAAACCAGTaGCTTCAAGGCACGGACAGC +
Preference number: 5 (lower is better)
Translates to: SPTSSPITQSRNRASLSRVQQNQ*LQGTDS
Trigger: GCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCAC...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 90 bp TCCTGTGAGTACTCGTGCCAAGCGGGAGAAGTCGCTGTGACGGTCTaGACGCCTGGAGAAAACCTTCTCATACAGCTCATGAAGTTTCGC +
Preference number: 5 (lower is better)
Translates to: SCEYSCQAGEVAVTV*TPGENLLIQLMKFR
Trigger: GCGAAACTTCATGAGCTGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCGCTTGGCACGAGTACTCACAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTAGGGACAGGGCAAGTCAGTCCAGTGTGTGGTCCTTGGAGCCAAGGGGGAAGGCCCAGATGCCTCTTCTaGAAGAGAAACAGATATCCG +
Preference number: 5 (lower is better)
Translates to: LGTGQVSPVCGPWSQGGRPRCLF*KRNRYP
Trigger: CGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGGG...CCTTCCCCCTTGGCTCCAAGGACCACACACTGGACTGACTTGCCCTGTCCCTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGTGCCCTCGGGAAGCTaGGCCAGCTCAGTGTCTCGC +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPVPSGS*ASSVSR
Trigger: GCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCAC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCACCAGCTGCGCATGTaGAGCCACTCTACAGTGCGC +
Preference number: 5 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSHQLRM*SHSTVR
Trigger: GCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTTCTGGAACCTTTACCTaGTCTGCCCAGGGGTTTAGC +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCSGTFT*SAQGFS
Trigger: GCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGA...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp AGCTTGTTGGTGGCTCGATCCGGGACACAATCTCAGCCAAGTCAGTaGACCCAGAACTTGGGAAGGCAAGTATATCTGCACGGCGACTCT +
Preference number: 5 (lower is better)
Translates to: SLLVARSGTQSQPSQ*TQNLGRQVYLHGDS
Trigger: AGAGTCGCCGTGCAGATATACTTGCCTTCCCAAGTTCTGGGTTCACTGACTTGGCTGAGATTGTGTCCCGGATCGAGCCACCAACAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCTCCAGCAGCCCATCTaGAACCACATAGATGCTGGC +
Preference number: 5 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSLQQPI*NHIDAG
Trigger: GCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTTCAATCCGCATCAGCTaGGCTAGCTCTCTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCSIRIS*ASSLFA
Trigger: TGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTGA...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTTGCCACTGCCTCGTaGGATGACACTACGGAGACG +
Preference number: 5 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSLATAS*DDTTET
Trigger: CGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGCAGCAAAACCAGTaGCTTCAAGGCACGGACAGC +
Preference number: 5 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSVQQNQ*LQGTDS
Trigger: GCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCAC...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCGTGCAGCAAAACCAGTaGCTTCAAGGCACGGACAGC +
Preference number: 5 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSVQQNQ*LQGTDS
Trigger: GCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCAC...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGATGCTGGCATCTGGTaGACCGGGCCGAAAAACATA +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPDAGIW*TGPKNI
Trigger: TATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACACTCCAGCAGCCCATCTaGAACCACATAGATGCTGGC +
Preference number: 5 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTLQQPI*NHIDAG
Trigger: GCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAG...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TCCCCCACAAGCTCACCCATAACCCAGTCTAGGAACAGGGCTTCCCTGTCAAGACCCAGATGCCTCTTCTaGAAGAGAAACAGATATCCG +
Preference number: 5 (lower is better)
Translates to: SPTSSPITQSRNRASLSRPRCLF*KRNRYP
Trigger: CGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGGG...TCTTGACAGGGAAGCCCTGTTCCTAGACTGGGTTATGGGTGAGCTTGTGGGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTGGCTAGCTCTCTCTTaGCAGCCTCAAAGATGCTGC +
Preference number: 5 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSWLALS*QPQRCC
Trigger: GCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTGGCTAGCTCTCTCTTaGCAGCCTCAAAGATGCTGC +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPWLALS*QPQRCC
Trigger: GCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCCACACTTCCTCAGCCTaGTCAATCATGCGCTGGTAC +
Preference number: 5 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSHTSSA*SIMRWY
Trigger: GTACCAGCGCATGATTGACAAGGCTGAGGAAGTGTG...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCGCTACAGTAGACAGATaGCTGGCTGGGTTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPATVDR*LAGLVS
Trigger: ACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGC...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCGTGCAGCAAAACCAGTaGCTTCAAGGCACGGACAGC +
Preference number: 5 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSVQQNQ*LQGTDS
Trigger: GCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCAC...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCACTCCCGGGCTCGTaGTTTAGTTCGGCTGGCGCT +
Preference number: 5 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCPLPGS*FSSAGA
Trigger: AGCGCCAGCCGAACTAAACAACGAGCCCGGGAGTGG...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCTCTGGAACCTTTACCTaGTCTGCCCAGGGGTTTAGC +
Preference number: 5 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSSGTFT*SAQGFS
Trigger: GCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGA...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTTCTGGAACCTTTACCTaGTCTGCCCAGGGGTTTAGC +
Preference number: 5 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSSGTFT*SAQGFS
Trigger: GCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGA...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGAGGGTAGGTGGGAATaGGCCAGGTCTCCCTCTGTG +
Preference number: 5 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCEGRWE*ARSPSV
Trigger: CACAGAGGGAGACCTGGCCAATTCCCACCTACCCTC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCAATCCGCATCAGCTaGGCTAGCTCTCTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: GRAQGVLKYSSSGNNSVSSIRIS*ASSLFA
Trigger: TGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTGA...GCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTCAATCCGCATCAGCTaGGCTAGCTCTCTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPSIRIS*ASSLFA
Trigger: TGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTGA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCAGTACCACACTGGGTaGTGCACGCATGATCTCATA +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPQYHTG*CTHDLI
Trigger: TATGAGATCATGCGTGCACAACCCAGTGTGGTACTG...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCAGTACCACACTGGGTaGTGCACGCATGATCTCATA +
Preference number: 5 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSQYHTG*CTHDLI
Trigger: TATGAGATCATGCGTGCACAACCCAGTGTGGTACTG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATCAGTGCAGTTCTGCCCTCCCCTTAGGGACAGGGCAAGTCAGTCCAGTGTGTTGCAACTGCTGCAGATaGCCTAGAATTTTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: YQCSSALPLGTGQVSPVCCNCCR*PRIFWL
Trigger: AAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCA...ACACACTGGACTGACTTGCCCTGTCCCTAAGGGGAGGGCAGAACTGCACTGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAGATTGCTGGCTGGGTaGGTCAGTTCCGAGTGCTGC +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPRLLAG*VSSECC
Trigger: GCAGCACTCGGAACTGACCAACCCAGCCAGCAATCT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCGCTACAGTAGACAGATaGCTGGCTGGGTTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSATVDR*LAGLVS
Trigger: ACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGC...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCAGGGATGTGTCAGTTaGGTAGAGCACAATGCGATG +
Preference number: 5 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSQGCVS*VEHNAM
Trigger: CATCGCATTGTGCTCTACCAAACTGACACATCCCTG...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAAGGGGGAAGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTCAGGGATGTGTCAGTTaGGTAGAGCACAATGCGATG +
Preference number: 5 (lower is better)
Translates to: QGGRAQGVLKYSSSGNNSQGCVS*VEHNAM
Trigger: CATCGCATTGTGCTCTACCAAACTGACACATCCCTG...ACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCTTCCCCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp CCTTGCAACTGCTGCAGATTGCCTAGAATTTTCTGGCTTAGCAGATaGATAAGGCGGGTCACAACCTGTGGGTACCGACGTTTGATGTGG +
Preference number: 5 (lower is better)
Translates to: PCNCCRLPRIFWLSR*IRRVTTCGYRRLMW
Trigger: CCACATCAAACGTCGGTACCCACAGGTTGTGACCCGCCTTATTCATCTGCTAAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTATGCTCAGAAGGCTGTaGACGCTGTCTCCAGGAACC +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPMLRRL*TLSPGT
Trigger: GGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCAT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCTTCCAAAGTCCATGGTCTaGAAGCAGTCAATGGATGGA +
Preference number: 5 (lower is better)
Translates to: GEGHIVGQRLSVQFCPPLPKSMV*KQSMDG
Trigger: TCCATCCATTGACTGCTTCAAGACCATGGACTTTGG...AAGGGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTAGCCCCCTTCATCTCTaGAGCAGTCTGGTCCTGCAT +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPSPLHL*SSLVLH
Trigger: ATGCAGGACCAGACTGCTCAAGAGATGAAGGGGGCT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp CAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCCCCACACCCAGATGCCTCTTCTaGAAGAGAAACAGATATCCG +
Preference number: 5 (lower is better)
Translates to: QGVLKYSSSGNNSVSSPTPRCLF*KRNRYP
Trigger: CGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGGG...TGTGGGGGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCTGCAACTGCTGCAGATaGCCTAGAATTTTCTGGCTT +
Preference number: 5 (lower is better)
Translates to: LGEGHIVGQRLSVQFCPPCNCCR*PRIFWL
Trigger: AAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCA...GGGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTGCTACAGTAGACAGATaGCTGGCTGGGTTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPATVDR*LAGLVS
Trigger: ACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGC...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCCAAAGTCCATGGTCTaGAAGCAGTCAATGGATGGA +
Preference number: 5 (lower is better)
Translates to: FGGRSHSWSKVISAVLPSPKSMV*KQSMDG
Trigger: TCCATCCATTGACTGCTTCAAGACCATGGACTTTGG...GGAGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGATGCTGGCATCTGGTaGACCGGGCCGAAAAACATA +
Preference number: 5 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCDAGIW*TGPKNI
Trigger: TATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTTCAATCCGCATCAGCTaGGCTAGCTCTCTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPSIRIS*ASSLFA
Trigger: TGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTGA...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCAGTACCACACTGGGTaGTGCACGCATGATCTCATA +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPQYHTG*CTHDLI
Trigger: TATGAGATCATGCGTGCACAACCCAGTGTGGTACTG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCGCTACAGTAGACAGATaGCTGGCTGGGTTGGTCAGT +
Preference number: 5 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCATVDR*LAGLVS
Trigger: ACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGC...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTCCCAGATGCCTCTTCTaGAAGAGAAACAGATATCCG +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPPRCLF*KRNRYP
Trigger: CGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGGG...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 90 bp AATCTGCTTATCCTGGAAGACACGGTGGATACTTCTGTTAAAGGCTaGGCCAGTAAACATGGAGGTGACAGGATATGTGAGGTCCAATAC +
Preference number: 5 (lower is better)
Translates to: NLLILEDTVDTSVKG*ASKHGGDRICEVQY
Trigger: GTATTGGACCTCACATATCCTGTCACCTCCATGTTTACTGGCTCAGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGATAAGCAGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207421.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGGGCCCAGGGAGTGTTGAAGTATAGCAGCAGTGGGAATAATAGTGTGAGCTCCATACGTAAGATCTTCTaGGCAATGTTAAGCATCTTC +
Preference number: 5 (lower is better)
Translates to: RAQGVLKYSSSGNNSVSSIRKIF*AMLSIF
Trigger: GAAGATGCTTAACATTGCCAAGAAGATCTTACGTAT...GGAGCTCACACTATTATTCCCACTGCTGCTATACTTCAACACTCCCTGGGCCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp AGAGTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCCAGTACCACACTGGGTaGTGCACGCATGATCTCATA +
Preference number: 5 (lower is better)
Translates to: RVYLGEGHIVGQRLSVQFQYHTG*CTHDLI
Trigger: TATGAGATCATGCGTGCACAACCCAGTGTGGTACTG...GAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAACTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp TATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCCCTATACGTAAGATCTTCTaGGCAATGTTAAGCATCTTC +
Preference number: 5 (lower is better)
Translates to: YLGEGHIVGQRLSVQFCPIRKIF*AMLSIF
Trigger: GAAGATGCTTAACATTGCCAAGAAGATCTTACGTAT...AGGGCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS-3UTR CAA 90 bp GTTTATTTGGGGGAAGGTCACATAGTTGGTCAAAGGTTATCAGTGCAGTTCTGCATACGTAAGATCTTCTaGGCAATGTTAAGCATCTTC +
Preference number: 5 (lower is better)
Translates to: VYLGEGHIVGQRLSVQFCIRKIF*AMLSIF
Trigger: GAAGATGCTTAACATTGCCAAGAAGATCTTACGTAT...GCAGAACTGCACTGATAACCTTTGACCAACTATGTGACCTTCCCCCAAATAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp ACCGCCACTCCGGCCCCGATCATCACGCCCAGCACCTaGGGAACGAACGGCACAGGCTGGGCAACGCATATC +
Preference number: 6 (lower is better)
Translates to: TATPAPIITPST*GTNGTGWATHI
Trigger: GATATGCGTTGCCCAGCCTGTGCCGTTCGTTCCGCAGGTGCTGGGCGTGATGATCGGGGCCGGAGTGGCGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS CCA 72 bp CGGGATCCCCTGCAGGTCCAGGCAGAGGAGCTCCAATaGAGTCCAGGGGCCGGCCAGAGGTCTCCTTTGAGG +
Preference number: 6 (lower is better)
Translates to: RDPLQVQAEELQ*SPGAGQRSPLR
Trigger: CCTCAAAGGAGACCTCTGGCCGGCCCCTGGACTCCATTGGAGCTCCTCTGCCTGGACCTGCAGGGGATCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp TGGCCAGCTCAGTGTCTCGCACTGCGTGTACAGTGGTaGCTCGTGGCTGCCGGGTCAGTGCCTCCACCACGC +
Preference number: 6 (lower is better)
Translates to: WPAQCLALRVQW*LVAAGSVPPPR
Trigger: GCGTGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACACTGAGCTGGCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp GCTTGGCCAGCTCAGTGTCTCGCACTGCGTGTACAGTaGTGGCTCGTGGCTGCCGGGTCAGTGCCTCCACCA +
Preference number: 6 (lower is better)
Translates to: AWPAQCLALRVQ*WLVAAGSVPPP
Trigger: TGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACACTGAGCTGGCCAAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp ATCACGCCCAGCACCTGCGGAACGAACGGCACAGGCTaGGCAACGCATATCCGTCTCCCCAAGCCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: ITPSTCGTNGTG*ATHIRLPKPSS
Trigger: GGAGGAGGGCTTGGGGAGACGGATATGCGTTGCCCAGCCTGTGCCGTTCGTTCCGCAGGTGCTGGGCGTGAT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS GCA 72 bp GTGTCTCGCACTGCGTGTACAGTGGTGGCTCGTGGCTaGCGGGTCAGTGCCTCCACCACGCCAATGAGATCC +
Preference number: 6 (lower is better)
Translates to: VSRTACTVVARG*RVSASTTPMRS
Trigger: GGATCTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CTCAGTGTCTCGCACTGCGTGTACAGTGGTGGCTCGTaGCTGCCGGGTCAGTGCCTCCACCACGCCAATGAG +
Preference number: 6 (lower is better)
Translates to: LSVSHCVYSGGS*LPGQCLHHANE
Trigger: CTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCACGAGCCACCACTGTACACGCAGTGCGAGACACTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CGCAGAGTGGGGGCAGGTAGGGACAGTAGGAGGCACTaGCCCGGACGTAACGCCACACGCAGCCATCTTTGT +
Preference number: 6 (lower is better)
Translates to: RRVGAGRDSRRH*PGRNATRSHLC
Trigger: ACAAAGATGGCTGCGTGTGGCGTTACGTCCGGGCCAGTGCCTCCTACTGTCCCTACCTGCCCCCACTCTGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000207421.2
CDS TCA 72 bp CAGAGGGTAGGTGGGAATTGGCCAGGTCTCCCTCTGTaGGGTCAGCCTCCAGCACTGAAGGTGGGGGCTCCT +
Preference number: 6 (lower is better)
Translates to: QRVGGNWPGLPL*GQPPALKVGAP
Trigger: AGGAGCCCCCACCTTCAGTGCTGGAGGCTGACCTCACAGAGGGAGACCTGGCCAATTCCCACCTACCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp CTCGTGGCTGCCGGGTCAGTGCCTCCACCACGCCAATaGGATCCCCTCGACCATACTCCCCAACTAGCTCCT +
Preference number: 6 (lower is better)
Translates to: LVAAGSVPPPRQ*DPLDHTPQLAP
Trigger: AGGAGCTAGTTGGGGAGTATGGTCGAGGGGATCTCATTGGCGTGGTGGAGGCACTGACCCGGCAGCCACGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp TCGTTGCCGGAGTGTGGACTTCTCTTCTTCCACCTCTaGGGCAGTGCTAGGGCTGGCACCCTCAGGGGAGCC +
Preference number: 6 (lower is better)
Translates to: SLPECGLLFFHL*GSARAGTLRGA
Trigger: GGCTCCCCTGAGGGTGCCAGCCCTAGCACTGCCTCAGAGGTGGAAGAAGAGAAGTCCACACTCCGGCAACGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp GAGGGCCACCTTGCAAGCCTGAGATGTCTACTGGCATaGAGATGCAGCGGCTCAGTAACGGGGCTGGGGGTG +
Preference number: 6 (lower is better)
Translates to: EGHLASLRCLLA*RCSGSVTGLGV
Trigger: CACCCCCAGCCCCGTTACTGAGCCGCTGCATCTCCATGCCAGTAGACATCTCAGGCTTGCAAGGTGGCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp AGGCTCCAGTACAGAAGTCATGCTCTTGGCCCACTCCCGGGCTCGTaGTTTAGTTCGGCTGGCGCTGCGTTCCTCGGCATACAAGGCCCC +
Preference number: 6 (lower is better)
Translates to: RLQYRSHALGPLPGS*FSSAGAAFLGIQGP
Trigger: GGGGCCTTGTATGCCGAGGAACGCAGCGCCAGCCGAACTAAACAACGAGCCCGGGAGTGGGCCAAGAGCATGACTTCTGTACTGGAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207421.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp TGGCGCACGAAGGGGGACATTCTAGCAGCCACCGTGTaGGCTGCACTCAGTACCACACTGGGTTGTGCACGC +
Preference number: 6 (lower is better)
Translates to: WRTKGDILAATV*AALSTTLGCAR
Trigger: GCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTGGCTGCTAGAATGTCCCCCTTCGTGCGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp TGGCTGGGTTGGTCAGTTCCGAGTGCTGCGGAACACTaGGCCCGGAGCCTGGAAAGGGTCCTTGCAACTGCT +
Preference number: 6 (lower is better)
Translates to: WLGWSVPSAAEH*ARSLERVLATA
Trigger: AGCAGTTGCAAGGACCCTTTCCAGGCTCCGGGCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp GACAGATTGCTGGCTGGGTTGGTCAGTTCCGAGTGCTaGGGAACACTGAGCCCGGAGCCTGGAAAGGGTCCT +
Preference number: 6 (lower is better)
Translates to: DRLLAGLVSSEC*GTLSPEPGKGP
Trigger: AGGACCCTTTCCAGGCTCCGGGCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp GCTGGGCCAACCACCCTGACAGCCGGAATTCTTGAATaGTATCCAGTGCTGAAGCCCCCAGGAGTGCCCGGA +
Preference number: 6 (lower is better)
Translates to: AGPTTLTAGILE*YPVLKPPGVPG
Trigger: TCCGGGCACTCCTGGGGGCTTCAGCACTGGATAGCATTCAAGAATTCCGGCTGTCAGGGTGGTTGGCCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp TCTACAGTGCGCGTGGGACCAGGGCCTTCCTCCCGGTaGAGCAAAACCAGTTGCTTCAAGGCACGGACAGCA +
Preference number: 6 (lower is better)
Translates to: STVRVGPGPSSR*SKTSCFKARTA
Trigger: TGCTGTCCGTGCCTTGAAGCAACTGGTTTTGCTGCACCGGGAGGAAGGCCCTGGTCCCACGCGCACTGTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CAGCAGAGAAGGCTTCTACTGGGAGTCTCAGCACTGTaGAGTCCCGTGCAGCCCTGGCTGACACAGTCCGCT +
Preference number: 6 (lower is better)
Translates to: QQRRLLLGVSAL*SPVQPWLTQSA
Trigger: AGCGGACTGTGTCAGCCAGGGCTGCACGGGACTCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CTCATCCTCACAGTAGCTATATTCACAGGCACCCGCTaGCTGCTCCCGGAGCTCCTGAGTGGGGGTCCTAGG +
Preference number: 6 (lower is better)
Translates to: LILTVAIFTGTR*LLPELLSGGPR
Trigger: CCTAGGACCCCCACTCAGGAGCTCCGGGAGCAGCCAGCGGGTGCCTGTGAATATAGCTACTGTGAGGATGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
CDS CAA 72 bp TCCGGCCCCGATCATCACGCCCAGCACCATTCCGGTTaGCAGTGGGGCCTCCATCGATTGTTTCGGACTAGG +
Preference number: 6 (lower is better)
Translates to: SGPDHHAQHHSG*QWGLHRLFRTR
Trigger: CCTAGTCCGAAACAATCGATGGAGGCCCCACTGCAAACCGGAATGGTGCTGGGCGTGATGATCGGGGCCGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000207146.2
ENSMUST00000208002.2
ENSMUST00000208310.2
ENSMUST00000208762.2
CDS CAA 90 bp GCATCAGCTTGGCTAGCTCTCTCTTTGCAGCCTCAAAGATGCTGCTaGTCTGGCGGCCCTGGTAGGGCCCAAAGGGACATCCGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: ASAWLALSLQPQRCC*SGGPGRAQRDIRLW
Trigger: CCACAGGCGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCAAGCTGATGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp TGTGGGTACCGACGTTTGATGTGGCCTAAGGTGCCCTCGGGAAGCTaGGCCAGCTCAGTGTCTCGCACTGCGTGTACAGTGGTGGCTCGT +
Preference number: 6 (lower is better)
Translates to: CGYRRLMWPKVPSGS*ASSVSRTACTVVAR
Trigger: ACGAGCCACCACTGTACACGCAGTGCGAGACACTGAGCTGGCCAAGCTTCCCGAGGGCACCTTAGGCCACATCAAACGTCGGTACCCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp GCTTGGCTAGCTCTCTCTTTGCAGCCTCAAAGATGCTaGTTGTCTGGCGGCCCTGGTAGGGCCCAAAGGGAC +
Preference number: 6 (lower is better)
Translates to: AWLALSLQPQRC*LSGGPGRAQRD
Trigger: GTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp GTAGACAGATTGCTGGCTGGGTTGGTCAGTTCCGAGTaGTGCGGAACACTGAGCCCGGAGCCTGGAAAGGGT +
Preference number: 6 (lower is better)
Translates to: VDRLLAGLVSSE*CGTLSPEPGKG
Trigger: ACCCTTTCCAGGCTCCGGGCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp GGCGGCCCTGGTAGGGCCCAAAGGGACATCCGCCTGTaGCTGACTCATCCTCACAGTAGCTATATTCACAGG +
Preference number: 6 (lower is better)
Translates to: GGPGRAQRDIRL*LTHPHSSYIHR
Trigger: CCTGTGAATATAGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGTCCCTTTGGGCCCTACCAGGGCCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp GCCTCCACAGCTGTCCAGTCAATGGCAAAGTCCATCTaGCGCACGAAGGGGGACATTCTAGCAGCCACCGTG +
Preference number: 6 (lower is better)
Translates to: ASTAVQSMAKSI*RTKGDILAATV
Trigger: CACGGTGGCTGCTAGAATGTCCCCCTTCGTGCGCCAGATGGACTTTGCCATTGACTGGACAGCTGTGGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp CTGGCGCAGACAACGGACGGTCCAAGGCGTCAGGGATGTGTCAGTTaGGTAGAGCACAATGCGATGGGCATCTTCCTGCTGGGCCAACCA +
Preference number: 6 (lower is better)
Translates to: LAQTTDGPRRQGCVS*VEHNAMGIFLLGQP
Trigger: TGGTTGGCCCAGCAGGAAGATGCCCATCGCATTGTGCTCTACCAAACTGACACATCCCTGACGCCTTGGACCGTCCGTTGTCTGCGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp GAGCTCCAGCAGCCCATCTTGAACCACATAGATGCTGGCATCTGGTaGACCGGGCCGAAAAACATAGTCCCCCTGCCCGAGACGCTGGAA +
Preference number: 6 (lower is better)
Translates to: ELQQPILNHIDAGIW*TGPKNIVPLPETLE
Trigger: TTCCAGCGTCTCGGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp GCCCTGGTAGGGCCCAAAGGGACATCCGCCTGTGGCTaGCTCATCCTCACAGTAGCTATATTCACAGGCACC +
Preference number: 6 (lower is better)
Translates to: ALVGPKGTSACG*LILTVAIFTGT
Trigger: GGTGCCTGTGAATATAGCTACTGTGAGGATGAGTCAGCCACAGGCGGATGTCCCTTTGGGCCCTACCAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp AGTGCAGGCTCACATCCTGGTCCCCTTGGCGGGCTATaGTGGTGCCGGCTTTGGCATGATGTAGCAAGACTC +
Preference number: 6 (lower is better)
Translates to: SAGSHPGPLGGL*WCRLWHDVARL
Trigger: GAGTCTTGCTACATCATGCCAAAGCCGGCACCATCATAGCCCGCCAAGGGGACCAGGATGTGAGCCTGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp GCAACCACCAGCCAGACAGGCTGTCCCCATAGGTGCTaGGATCTGTCTCATCCTGGCTTCCAACGTCGATGG +
Preference number: 6 (lower is better)
Translates to: ATTSQTGCPHRC*DLSHPGFQRRW
Trigger: CCATCGACGTTGGAAGCCAGGATGAGACAGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp CACCTTGCAAGCCTGAGATGTCTACTGGCATGGAGATaGAGCGGCTCAGTAACGGGGCTGGGGGTGCTTCTA +
Preference number: 6 (lower is better)
Translates to: HLASLRCLLAWR*SGSVTGLGVLL
Trigger: TAGAAGCACCCCCAGCCCCGTTACTGAGCCGCTGCATCTCCATGCCAGTAGACATCTCAGGCTTGCAAGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp AAACCTTCTCATACAGCTCATGAAGTTTCGCTGGGCTaGGCCGTGAGAAGAGGCGGCGAGGACAGCGCAGGT +
Preference number: 6 (lower is better)
Translates to: KPSHTAHEVSLG*AVRRGGEDSAG
Trigger: ACCTGCGCTGTCCTCGCCGCCTCTTCTCACGGCGCAGCCCAGCGAAACTTCATGAGCTGTATGAGAAGGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp CCCCAAGCCCTCCTCCAGGGTCTTTTGAATCACCTCTaGCCCGGAGGAGGTTGTATTCAGTTCGTGACTCGG +
Preference number: 6 (lower is better)
Translates to: PQALLQGLLNHL*PGGGCIQFVTR
Trigger: CCGAGTCACGAACTGAATACAACCTCCTCCGGGGCAGAGGTGATTCAAAAGACCCTGGAGGAGGGCTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS CAA 72 bp TGGCTAGCTCTCTCTTTGCAGCCTCAAAGATGCTGCTaGTCTGGCGGCCCTGGTAGGGCCCAAAGGGACATC +
Preference number: 6 (lower is better)
Translates to: WLALSLQPQRCC*SGGPGRAQRDI
Trigger: GATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp TACAGAAGTCATGCTCTTGGCCCACTCCCGGGCTCGTaGTTTAGTTCGGCTGGCGCTGCGTTCCTCGGCATA +
Preference number: 6 (lower is better)
Translates to: YRSHALGPLPGS*FSSAGAAFLGI
Trigger: TATGCCGAGGAACGCAGCGCCAGCCGAACTAAACAACGAGCCCGGGAGTGGGCCAAGAGCATGACTTCTGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207421.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp ATGGGCACCTCAGCACACACAGGGAGGATAGCTACAGTAGACAGATaGCTGGCTGGGTTGGTCAGTTCCGAGTGCTGCGGAACACTGAGC +
Preference number: 6 (lower is better)
Translates to: MGTSAHTGRIATVDR*LAGLVSSECCGTLS
Trigger: GCTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGCTATCCTCCCTGTGTGTGCTGAGGTGCCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp CTGGGCAACGCATATCCGTCTCCCCAAGCCCTCCTCCAGGGTCTTTaGAATCACCTCTGCCCCGGAGGAGGTTGTATTCAGTTCGTGACT +
Preference number: 6 (lower is better)
Translates to: LGNAYPSPQALLQGL*NHLCPGGGCIQFVT
Trigger: AGTCACGAACTGAATACAACCTCCTCCGGGGCAGAGGTGATTCAAAAGACCCTGGAGGAGGGCTTGGGGAGACGGATATGCGTTGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS TCA 72 bp TCCCCTTGGCGGGCTATGATGGTGCCGGCTTTGGCATaGTGTAGCAAGACTCTGCTGTTCAGTAGAGAGGGG +
Preference number: 6 (lower is better)
Translates to: SPWRAMMVPALA*CSKTLLFSREG
Trigger: CCCCTCTCTACTGAACAGCAGAGTCTTGCTACATCATGCCAAAGCCGGCACCATCATAGCCCGCCAAGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp TCTGCACGCCTGGAGAAAACCTTCTCATACAGCTCATaGAGTTTCGCTGGGCTGCGCCGTGAGAAGAGGCGG +
Preference number: 6 (lower is better)
Translates to: SARLEKTFSYSS*SFAGLRREKRR
Trigger: CCGCCTCTTCTCACGGCGCAGCCCAGCGAAACTTCATGAGCTGTATGAGAAGGTTTTCTCCAGGCGTGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp CCTGTGAGTACTCGTGCCAAGCGGGAGAAGTCGCTGTaGCGGTCTGCACGCCTGGAGAAAACCTTCTCATAC +
Preference number: 6 (lower is better)
Translates to: PVSTRAKREKSL*RSARLEKTFSY
Trigger: GTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCGCTTGGCACGAGTACTCACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp ACTTCCTCAGCCTTGTCAATCATGCGCTGGTACACGTaGAGGCAGCCCCAGAGCACAAAGTGCAGGCTCACA +
Preference number: 6 (lower is better)
Translates to: TSSALSIMRWYT*RQPQSTKCRLT
Trigger: TGTGAGCCTGCACTTTGTGCTCTGGGGCTGCCTGCACGTGTACCAGCGCATGATTGACAAGGCTGAGGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp CACGAAGGGGGACATTCTAGCAGCCACCGTGTGAGCTaGACTCAGTACCACACTGGGTTGTGCACGCATGAT +
Preference number: 6 (lower is better)
Translates to: HEGGHSSSHRVS*TQYHTGLCTHD
Trigger: ATCATGCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTGGCTGCTAGAATGTCCCCCTTCGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CAGCAGCCCATCTTGAACCACATAGATGCTGGCATCTaGTTGACCGGGCCGAAAAACATAGTCCCCCTGCCC +
Preference number: 6 (lower is better)
Translates to: QQPILNHIDAGI*LTGPKNIVPLP
Trigger: GGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp AGGGTACTTGGTGAAGACAGCAGAGAAGGCTTCTACTaGGAGTCTCAGCACTGTGGAGTCCCGTGCAGCCCT +
Preference number: 6 (lower is better)
Translates to: RVLGEDSREGFY*ESQHCGVPCSP
Trigger: AGGGCTGCACGGGACTCCACAGTGCTGAGACTCCCAGTAGAAGCCTTCTCTGCTGTCTTCACCAAGTACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CTCCCCATCAGCACAGCCATCAGAGACGTAGCTTGTTaGTGGCTCGATCCGGGACACAATCTCAGCCAAGTC +
Preference number: 6 (lower is better)
Translates to: LPISTAIRDVAC*WLDPGHNLSQV
Trigger: GACTTGGCTGAGATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCTGATGGCTGTGCTGATGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp TTGGCTCCCATGCTTCGGGCAATATCCGCATCTTTGTaGACGCGCATGGCAGAGGCAGTGATGTCTGTGGTC +
Preference number: 6 (lower is better)
Translates to: LAPMLRAISASL*TRMAEAVMSVV
Trigger: GACCACAGACATCACTGCCTCTGCCATGCGCGTCCACAAAGATGCGGATATTGCCCGAAGCATGGGAGCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS CAA 72 bp CAGCCCATCTTGAACCACATAGATGCTGGCATCTGGTaGACCGGGCCGAAAAACATAGTCCCCCTGCCCGAG +
Preference number: 6 (lower is better)
Translates to: QPILNHIDAGIW*TGPKNIVPLPE
Trigger: CTCGGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp TCATCCTGGCTTCCAACGTCGATGGCAATGACCGTTTaGGCTCCCATGCTTCGGGCAATATCCGCTGGCAGG +
Preference number: 6 (lower is better)
Translates to: SSWLPTSMAMTV*APMLRAISAGR
Trigger: CCTGCCAGCGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000208002.2
CDS CAA 72 bp CCTCCCCATCAGCACAGCCATCAGAGACGTAGCTTGTaGGTGGCTCGATCCGGGACACAATCTCAGCCAAGT +
Preference number: 6 (lower is better)
Translates to: PPHQHSHQRRSL*VARSGTQSQPS
Trigger: ACTTGGCTGAGATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCTGATGGCTGTGCTGATGGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp GCATATCCGTCTCCCCAAGCCCTCCTCCAGGGTCTTTaGAATCACCTCTGCCCCGGAGGAGGTTGTATTCAG +
Preference number: 6 (lower is better)
Translates to: AYPSPQALLQGL*NHLCPGGGCIQ
Trigger: CTGAATACAACCTCCTCCGGGGCAGAGGTGATTCAAAAGACCCTGGAGGAGGGCTTGGGGAGACGGATATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS CAA 90 bp TGCCCGGATGACGTCACTGTTAAGGAGGAGCGTGGGACCAATAGCTaGCAGAGCATGCTGCAGTTCCAGAGTAAAGGCCATCATGGGCAC +
Preference number: 6 (lower is better)
Translates to: CPDDVTVKEERGTNS*QSMLQFQSKGHHGH
Trigger: GTGCCCATGATGGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCACGCTCCTCCTTAACAGTGACGTCATCCGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp TACGCCAAGCGGGACTGGATCTCAGCCATGTCTGGAACCTTTACCTaGTCTGCCCAGGGGTTTAGCCTTTTCCACAGCAACCACCAGCCA +
Preference number: 6 (lower is better)
Translates to: YAKRDWISAMSGTFT*SAQGFSLFHSNHQP
Trigger: TGGCTGGTGGTTGCTGTGGAAAAGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCTTGGCGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp TACTCGTGCCAAGCGGGAGAAGTCGCTGTGACGGTCTaGACGCCTGGAGAAAACCTTCTCATACAGCTCATG +
Preference number: 6 (lower is better)
Translates to: YSCQAGEVAVTV*TPGENLLIQLM
Trigger: CATGAGCTGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCGCTTGGCACGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp GCATCTTCAGTTTCTTCTTCATGCGGGGCCGGGAAGTaGTGGAGACTGATGTGTCCACCAGGGAAGAAGTGG +
Preference number: 6 (lower is better)
Translates to: ASSVSSSCGAGK*WRLMCPPGKKW
Trigger: CCACTTCTTCCCTGGTGGACACATCAGTCTCCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGAAGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
ENSMUST00000208762.2
CDS CCA 72 bp CACAGGGAGGATAGCTACAGTAGACAGATTGCTGGCTaGGTTGGTCAGTTCCGAGTGCTGCGGAACACTGAG +
Preference number: 6 (lower is better)
Translates to: HREDSYSRQIAG*VGQFRVLRNTE
Trigger: CTCAGTGTTCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGCTATCCTCCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CCCATCAGCACAGCCATCAGAGACGTAGCTTGTTGGTaGCTCGATCCGGGACACAATCTCAGCCAAGTCAGT +
Preference number: 6 (lower is better)
Translates to: PISTAIRDVACW*LDPGHNLSQVS
Trigger: ACTGACTTGGCTGAGATTGTGTCCCGGATCGAGCCACCAACAAGCTACGTCTCTGATGGCTGTGCTGATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp AGATCCCCTCGACCATACTCCCCAACTAGCTCCTTCTaGCCACTGCCTCGTTGGATGACACTACGGAGACGT +
Preference number: 6 (lower is better)
Translates to: RSPRPYSPTSSF*PLPRWMTLRRR
Trigger: ACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGGGGAGTATGGTCGAGGGGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp TCAGCACACACAGGGAGGATAGCTACAGTAGACAGATaGCTGGCTGGGTTGGTCAGTTCCGAGTGCTGCGGA +
Preference number: 6 (lower is better)
Translates to: SAHTGRIATVDR*LAGLVSSECCG
Trigger: TCCGCAGCACTCGGAACTGACCAACCCAGCCAGCAATCTGTCTACTGTAGCTATCCTCCCTGTGTGTGCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp TCATCCTGGCTTCCAACGTCGATGGCAATGACCGTTTaGGCTCCCATGCTTCGGGCAATATCCGCTGGAACG +
Preference number: 6 (lower is better)
Translates to: SSWLPTSMAMTV*APMLRAISAGT
Trigger: CGTTCCAGCGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207421.2
CDS CAA 90 bp ACGCCAATGAGATCCCCTCGACCATACTCCCCAACTAGCTCCTTCTaGCCACTGCCTCGTTGGATGACACTACGGAGACGTCCATTGAGT +
Preference number: 6 (lower is better)
Translates to: TPMRSPRPYSPTSSF*PLPRWMTLRRRPLS
Trigger: ACTCAATGGACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGGGGAGTATGGTCGAGGGGATCTCATTGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp AGATCTGTCTCATCCTGGCTTCCAACGTCGATGGCAATGACCGTTTaGGCTCCCATGCTTCGGGCAATATCCGCATCTTTGTGGACGCGC +
Preference number: 6 (lower is better)
Translates to: RSVSSWLPTSMAMTV*APMLRAISASLWTR
Trigger: GCGCGTCCACAAAGATGCGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGAGACAGATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS TCA 72 bp CATGTCAAAATCAGAACGAGGGCCACCTTGCAAGCCTaGGATGTCTACTGGCATGGAGATGCAGCGGCTCAG +
Preference number: 6 (lower is better)
Translates to: HVKIRTRATLQA*DVYWHGDAAAQ
Trigger: CTGAGCCGCTGCATCTCCATGCCAGTAGACATCTCAGGCTTGCAAGGTGGCCCTCGTTCTGATTTTGACATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp GATCTGTCTCATCCTGGCTTCCAACGTCGATGGCAATaGCCGTTTTGGCTCCCATGCTTCGGGCAATATCCG +
Preference number: 6 (lower is better)
Translates to: DLSHPGFQRRWQ*PFWLPCFGQYP
Trigger: CGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGAGACAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207421.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp GGCAGAGCTCCAGCAGCCCATCTTGAACCACATAGATaGTGGCATCTGGTTGACCGGGCCGAAAAACATAGT +
Preference number: 6 (lower is better)
Translates to: GRAPAAHLEPHR*WHLVDRAEKHS
Trigger: ACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAGCTCTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS GCA 72 bp TGCGGAACACTGAGCCCGGAGCCTGGAAAGGGTCCTTaGAACTGCTGCAGATTGCCTAGAATTTTCTGGCTT +
Preference number: 6 (lower is better)
Translates to: CGTLSPEPGKGP*NCCRLPRIFWL
Trigger: AAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGGCTCCGGGCTCAGTGTTCCGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp TCTTCAGTTTCTTCTTCATGCGGGGCCGGGAAGTGGTaGAGACTGATGTGTCCACCAGGGAAGAAGTGGACT +
Preference number: 6 (lower is better)
Translates to: SSVSSSCGAGKW*RLMCPPGKKWT
Trigger: AGTCCACTTCTTCCCTGGTGGACACATCAGTCTCCACCACTTCCCGGCCCCGCATGAAGAAGAAACTGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
ENSMUST00000208762.2
CDS CCA 72 bp AGAGCTCCAGCAGCCCATCTTGAACCACATAGATGCTaGCATCTGGTTGACCGGGCCGAAAAACATAGTCCC +
Preference number: 6 (lower is better)
Translates to: RAPAAHLEPHRC*HLVDRAEKHSP
Trigger: GGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAGCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CCAAGCGGGAGAAGTCGCTGTGACGGTCTGCACGCCTaGAGAAAACCTTCTCATACAGCTCATGAAGTTTCG +
Preference number: 6 (lower is better)
Translates to: PSGRSRCDGLHA*RKPSHTAHEVS
Trigger: CGAAACTTCATGAGCTGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCGCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp CGGGACTGGATCTCAGCCATGTCTGGAACCTTTACCTaGTCTGCCCAGGGGTTTAGCCTTTTCCACAGCAAC +
Preference number: 6 (lower is better)
Translates to: RDWISAMSGTFT*SAQGFSLFHSN
Trigger: GTTGCTGTGGAAAAGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 90 bp AGATCTGTCTCATCCTGGCTTCCAACGTCGATGGCAATGACCGTTTaGGCTCCCATGCTTCGGGCAATATCCGCTGGCAGGTTGTTGATG +
Preference number: 6 (lower is better)
Translates to: RSVSSWLPTSMAMTV*APMLRAISAGRLLM
Trigger: CATCAACAACCTGCCAGCGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGAGACAGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207336.2
ENSMUST00000208002.2
CDS GCA 72 bp ACACTGAGCCCGGAGCCTGGAAAGGGTCCTTGCAACTaGTGCAGATTGCCTAGAATTTTCTGGCTTAGCAGA +
Preference number: 6 (lower is better)
Translates to: TLSPEPGKGPCN*CRLPRIFWLSR
Trigger: TCTGCTAAGCCAGAAAATTCTAGGCAATCTGCAGCAGTTGCAAGGACCCTTTCCAGGCTCCGGGCTCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp AGGGGATGCTGTCTGAGGTCCCCCAGATGCCTCTTCTaGAAGAGAAACAGATATCCGTCCACGTTCATAGGC +
Preference number: 6 (lower is better)
Translates to: RGCCLRSPRCLF*KRNRYPSTFIG
Trigger: GCCTATGAACGTGGACGGATATCTGTTTCTCTTCAAGAAGAGGCATCTGGGGGACCTCAGACAGCATCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp CTGTTCAGTAGAGAGGGGTCCTCAATCCGCATCAGCTaGGCTAGCTCTCTCTTTGCAGCCTCAAAGATGCTG +
Preference number: 6 (lower is better)
Translates to: LFSREGSSIRIS*ASSLFAASKML
Trigger: CAGCATCTTTGAGGCTGCAAAGAGAGAGCTAGCCAAGCTGATGCGGATTGAGGACCCCTCTCTACTGAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp AGCCACCGTGTGAGCTGCACTCAGTACCACACTGGGTaGTGCACGCATGATCTCATAGAAGTGGGATTTGGA +
Preference number: 6 (lower is better)
Translates to: SHRVSCTQYHTG*CTHDLIEVGFG
Trigger: TCCAAATCCCACTTCTATGAGATCATGCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp GACGTCACTGTTAAGGAGGAGCGTGGGACCAATAGCTaGCAGAGCATGCTGCAGTTCCAGAGTAAAGGCCAT +
Preference number: 6 (lower is better)
Translates to: DVTVKEERGTNS*QSMLQFQSKGH
Trigger: ATGGCCTTTACTCTGGAACTGCAGCATGCTCTGCAAGCTATTGGTCCCACGCTCCTCCTTAACAGTGACGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp TCATCCTGGCTTCCAACGTCGATGGCAATGACCGTTTaGGCTCCCATGCTTCGGGCAATATCCGCATCTTTG +
Preference number: 6 (lower is better)
Translates to: SSWLPTSMAMTV*APMLRAISASL
Trigger: CAAAGATGCGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207941.2
CDS CAA 90 bp AGATCTGTCTCATCCTGGCTTCCAACGTCGATGGCAATGACCGTTTaGGCTCCCATGCTTCGGGCAATATCCGCTGGAACGTTGTTAACG +
Preference number: 6 (lower is better)
Translates to: RSVSSWLPTSMAMTV*APMLRAISAGTLLT
Trigger: CGTTAACAACGTTCCAGCGGATATTGCCCGAAGCATGGGAGCCAAAACGGTCATTGCCATCGACGTTGGAAGCCAGGATGAGACAGATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000207421.2
CDS GCA 72 bp CACCGTGTGAGCTGCACTCAGTACCACACTGGGTTGTaGACGCATGATCTCATAGAAGTGGGATTTGGAGAT +
Preference number: 6 (lower is better)
Translates to: HRVSCTQYHTGL*THDLIEVGFGD
Trigger: ATCTCCAAATCCCACTTCTATGAGATCATGCGTGCACAACCCAGTGTGGTACTGAGTGCAGCTCACACGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp TACTCCCCAACTAGCTCCTTCTTGCCACTGCCTCGTTaGATGACACTACGGAGACGTCCATTGAGTACAATG +
Preference number: 6 (lower is better)
Translates to: YSPTSSFLPLPR*MTLRRRPLSTM
Trigger: CATTGTACTCAATGGACGTCTCCGTAGTGTCATCCAACGAGGCAGTGGCAAGAAGGAGCTAGTTGGGGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp ATGATCTGTACCACTCGCACCAAACTCTCAGGGTACTaGGTGAAGACAGCAGAGAAGGCTTCTACTGGGAGT +
Preference number: 6 (lower is better)
Translates to: MICTTRTKLSGY*VKTAEKASTGS
Trigger: ACTCCCAGTAGAAGCCTTCTCTGCTGTCTTCACCAAGTACCCTGAGAGTTTGGTGCGAGTGGTACAGATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS TCA 72 bp ATCCTGGAAGACACGGTGGATACTTCTGTTAAAGGCTaGGCCAGTAAACATGGAGGTGACAGGATATGTGAG +
Preference number: 6 (lower is better)
Translates to: ILEDTVDTSVKG*ASKHGGDRICE
Trigger: CTCACATATCCTGTCACCTCCATGTTTACTGGCTCAGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207421.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CCA 72 bp CACAGGTCCTCAATCTGCTTATCCTGGAAGACACGGTaGATACTTCTGTTAAAGGCTGAGCCAGTAAACATG +
Preference number: 6 (lower is better)
Translates to: HRSSICLSWKTR*ILLLKAEPVNM
Trigger: CATGTTTACTGGCTCAGCCTTTAACAGAAGTATCCACCGTGTCTTCCAGGATAAGCAGATTGAGGACCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207421.2
ENSMUST00000207941.2
ENSMUST00000208002.2
CDS CAA 72 bp AGGGTCGGAGTCTCCTTTTGGATACGTAAGATCTTCTaGGCAATGTTAAGCATCTTCAGTTTCTTCTTCATG +
Preference number: 6 (lower is better)
Translates to: RVGVSFWIRKIF*AMLSIFSFFFM
Trigger: CATGAAGAAGAAACTGAAGATGCTTAACATTGCCAAGAAGATCTTACGTATCCAAAAGGAGACTCCGACCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000004681.14
ENSMUST00000111070.4
ENSMUST00000207424.2
ENSMUST00000207941.2
ENSMUST00000208002.2
ENSMUST00000208762.2