RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PNPLA3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041653

Ensembl transcript IDs: ENSMUST00000045289.6

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp AGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCATCCGACACCCTGGTaGGTGAGATGTGAACCTTGC +
Preference number: 4 (lower is better)
Translates to: RALGTTGRDAYLAHTPWAHPTPW*VRCEPC
Trigger: GCAAGGTTCACATCTCACTCACCAGGGTGTCGGATG...GGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR GCA 90 bp CACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTACAGGAAGCCGCAGCCTaGAAACGACAGGCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: HHPSSDPKSSGNNREGCLQEAAA*KRQAPA
Trigger: CGCTGGAGCCTGTCGTTTGCAGGCTGCGGCTTCCTG...TAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR GCA 90 bp CTTGTTAAGGCTGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGCATCGCGGAGGAGGTaGGGGGCGCGCTCGCTCAGA +
Preference number: 4 (lower is better)
Translates to: LVKAVTTQALTLRALGTTASRRR*GARSLR
Trigger: TCTGAGCGAGCGCGCCCCGCACCTCCTCCGCGATGC...GGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACAGCCTTAACAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp GACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCTCTGGGAGGCTCTCCTaGAGCCCGTCTCTGATGCAC +
Preference number: 4 (lower is better)
Translates to: DPKSSGNNREGCLSGPHTSGRLS*SPSLMH
Trigger: GTGCATCAGAGACGGGCTCCAGGAGAGCCTCCCAGA...GGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR TCA 90 bp CACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTACACTCAGAGCTGTGCTaGGCTCGGGGGACAGTGTCT +
Preference number: 4 (lower is better)
Translates to: HHPSSDPKSSGNNREGCLHSELC*ARGTVS
Trigger: AGACACTGTCCCCCGAGCTCAGCACAGCTCTGAGTG...TAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR GCA 90 bp CTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCAAGTAGTGGCCCGTTACAGATaGCATTCTCCTCCAGGAACC +
Preference number: 4 (lower is better)
Translates to: LGTTGRDAYLAHTPWAQVVARYR*HSPPGT
Trigger: GGTTCCTGGAGGAGAATGGCATCTGTAACGGGCCAC...TACTTGGGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR GCA 90 bp TCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCAAGTGGAGGTTGCAGACTTTaGTCAGGTAGCCCTCCCTGT +
Preference number: 4 (lower is better)
Translates to: SGNNREGCLSGPHTLGPSGGCRL*SGSPPC
Trigger: ACAGGGAGGGCTACCTGAGCAAAGTCTGCAACCTCC...ACTTGGGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp AAGGCTGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGCTGGTGGACATTGTCTaGGAGGCTCTCCTGGAGCCC +
Preference number: 4 (lower is better)
Translates to: KAVTTQALTLRALGTTGRLVDIV*EALLEP
Trigger: GGGCTCCAGGAGAGCCTCCCAGACAATGTCCACCAG...CCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACAGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp AGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCCAGAAATGACCTGGTaGACATTGTCTGGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: RALGTTGRDAYLAHTPWAPEMTW*TLSGRL
Trigger: GAGCCTCCCAGACAATGTCCACCAGGTCATTTCTGG...GGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR TCA 90 bp TGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCTGTAGGACAGGATCCTaGCGGGCAGGAGGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: CHHPSSDPKSSGNNREGCCRTGS*RAGGCR
Trigger: TCTGCAACCTCCTGCCCGTCAGGATCCTGTCCTACA...GCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp AGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCTTGCCAGAAATGACCTaGTGGACATTGTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: RALGTTGRDAYLAHTPWALPEMT*WTLSGR
Trigger: CCTCCCAGACAATGTCCACCAGGTCATTTCTGGCAA...GGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp CACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTACATGTCACCAGCCTGTaGACTGCAGCGATAGCCGAC +
Preference number: 4 (lower is better)
Translates to: HHPSSDPKSSGNNREGCLHVTSL*TAAIAD
Trigger: GTCGGCTATCGCTGCAGTCCACAGGCTGGTGACATG...TAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp AGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCCACGACTTCGTCTTTaGAATGGAACTCAGACACCA +
Preference number: 4 (lower is better)
Translates to: RALGTTGRDAYLAHTPWAPRLRL*NGTQTP
Trigger: TGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGG...GGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp AAGGCTGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGCTCTGGTCAGAAGTTaGAGGTTCCCAGTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: KAVTTQALTLRALGTTGRALVRS*RFPVQR
Trigger: CCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGC...CCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACAGCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp CTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCAAGTAACTTCGTCTTTGGAATaGAACTCAGACACCAGCACG +
Preference number: 4 (lower is better)
Translates to: LGTTGRDAYLAHTPWAQVTSSLE*NSDTST
Trigger: CGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGT...TACTTGGGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR TCA 90 bp CCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCGAACCTTGCCAGAAATaGCCTGGTGGACATTGTCTG +
Preference number: 4 (lower is better)
Translates to: PSSDPKSSGNNREGCLSGEPCQK*PGGHCL
Trigger: CAGACAATGTCCACCAGGTCATTTCTGGCAAGGTTC...GCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR TCA 90 bp TGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCAGAAAGGTGACACCGTaGTGGTGGTTTTGGCATCCA +
Preference number: 4 (lower is better)
Translates to: CHHPSSDPKSSGNNREGCRKVTP*WWFWHP
Trigger: TGGATGCCAAAACCACCATCACGGTGTCACCTTTCT...GCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR GCA 90 bp CTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCAAGTATGTCTCCCACAAGTTTaGCATTTTCCAAGCAGGCTT +
Preference number: 4 (lower is better)
Translates to: LGTTGRDAYLAHTPWAQVCLPQV*HFPSRL
Trigger: AAGCCTGCTTGGAAAATGGCAAACTTGTGGGAGACA...TACTTGGGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR TCA 90 bp CACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTAAGAAGTTGGTGGACTTaGCTTTGGGGCAGATGTCAT +
Preference number: 4 (lower is better)
Translates to: HHPSSDPKSSGNNREGCLRSWWT*LWGRCH
Trigger: ATGACATCTGCCCCAAAGTCAAGTCCACCAACTTCT...TAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp TCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACCACTGGATATCATCCTaGATATCAGGGAGCCATGTC +
Preference number: 4 (lower is better)
Translates to: SDPKSSGNNREGCLSGPHHWISS*ISGSHV
Trigger: GACATGGCTCCCTGATATCCAGGATGATATCCAGTG...GTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp GGCTGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGAGCCCATTGTAGCCACTaGATATCATCCTGGATATCA +
Preference number: 4 (lower is better)
Translates to: GCHHPSSDPKSSGNNREGAHCSH*ISSWIS
Trigger: TGATATCCAGGATGATATCCAGTGGCTACAATGGGC...TCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CCA 90 bp CTTGTTAAGGCTGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCTTGGTGATATTCACGTaGAAGAAGTTGGTGGACTTG +
Preference number: 4 (lower is better)
Translates to: LVKAVTTQALTLRALGTTLVIFT*KKLVDL
Trigger: CAAGTCCACCAACTTCTTCCACGTGAATATCACCAA...GGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACAGCCTTAACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 90 bp TATACGGCCGAGAGGGAGACTGCACACGAAGGTGACCGCGTGCAGTaGACCGGCCGAGCAGCCAAAGAAAGTGCGCGCATCGCGGAGGAG +
Preference number: 5 (lower is better)
Translates to: YTAERETAHEGDRVQ*TGRAAKESARIAEE
Trigger: CTCCTCCGCGATGCGCGCACTTTCTTTGGCTGCTCGGCCGGTGCACTGCACGCGGTCACCTTCGTGTGCAGTCTCCCTCTCGGCCGTATA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp GAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCCGGCGTCCAGGTACCCTaGATAGCACAGCTCTCCCAT +
Preference number: 5 (lower is better)
Translates to: ELWEQPGGMPIWPTHPGPGVQVP*IAQLSH
Trigger: ATGGGAGAGCTGTGCTATCAAGGGTACCTGGACGCC...GGGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 90 bp GCGCCACCAAGGACAGACTCAGGCTGCGCTGTGGCCCGTTACAGATaGCATTCTCCTCCAGGAACCGGAAGGCGTCCAGGTACCCTTGAT +
Preference number: 5 (lower is better)
Translates to: APPRTDSGCAVARYR*HSPPGTGRRPGTLD
Trigger: ATCAAGGGTACCTGGACGCCTTCCGGTTCCTGGAGGAGAATGGCATCTGTAACGGGCCACAGCGCAGCCTGAGTCTGTCCTTGGTGGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp CACTGGATATCATCCTGGATATCAGGGAGCCATGTCACCAGCCTGTaGACTGCAGCGATAGCCGACTCCACGGGCAGACTGCAGGGCAGC +
Preference number: 5 (lower is better)
Translates to: HWISSWISGSHVTSL*TAAIADSTGRLQGS
Trigger: GCTGCCCTGCAGTCTGCCCGTGGAGTCGGCTATCGCTGCAGTCCACAGGCTGGTGACATGGCTCCCTGATATCCAGGATGATATCCAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 90 bp CATTTTCCAAGCAGGCTTCTGGCGCCACCAAGGACAGACTCAGGCTaGGCTGTGGCCCGTTACAGATGCCATTCTCCTCCAGGAACCGGA +
Preference number: 5 (lower is better)
Translates to: HFPSRLLAPPRTDSG*AVARYRCHSPPGTG
Trigger: TCCGGTTCCTGGAGGAGAATGGCATCTGTAACGGGCCACAGCGCAGCCTGAGTCTGTCCTTGGTGGCGCCAGAAGCCTGCTTGGAAAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp CACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTAATGACCTGGTGGACATaGTCTGGGAGGCTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: HHPSSDPKSSGNNREGCLMTWWT*SGRLSW
Trigger: CCAGGAGAGCCTCCCAGACAATGTCCACCAGGTCAT...TAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp AGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCCTGGGCCTTCACGTGGAAGAAGTaGGTGGACTTGACTTTGGGG +
Preference number: 5 (lower is better)
Translates to: RALGTTGRDAYLAHTPWAFTWKK*VDLTLG
Trigger: CCCCAAAGTCAAGTCCACCAACTTCTTCCACGTGAA...GGCCCAGGGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp GACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCCTATCTGGCCCACACACCAGGCTGACTGGCACCTaGTCTCCCACAAGTTTGCCA +
Preference number: 5 (lower is better)
Translates to: DPKSSGNNREGCLSGPHTRLTGT*SPTSLP
Trigger: TGGCAAACTTGTGGGAGACAAGGTGCCAGTCAGCCT...GGTGTGTGGGCCAGATAGGCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 90 bp GATATCATCCTGGATATCAGGGAGCCATGTCACCAGCCTGTGGACTaGAGCGATAGCCGACTCCACGGGCAGACTGCAGGGCAGCATGAT +
Preference number: 5 (lower is better)
Translates to: DIILDIREPCHQPVD*SDSRLHGQTAGQHD
Trigger: ATCATGCTGCCCTGCAGTCTGCCCGTGGAGTCGGCTATCGCTGCAGTCCACAGGCTGGTGACATGGCTCCCTGATATCCAGGATGATATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS TCA 90 bp GACACCAGCACGTTCTCCCCATCCGACACCCTGGTGAGTGAGATGTaGACCTTGCCAGAAATGACCTGGTGGACATTGTCTGGGAGGCTC +
Preference number: 5 (lower is better)
Translates to: DTSTFSPSDTLVSEM*TLPEMTWWTLSGRL
Trigger: GAGCCTCCCAGACAATGTCCACCAGGTCATTTCTGGCAAGGTTCACATCTCACTCACCAGGGTGTCGGATGGGGAGAACGTGCTGGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp CCCATCACCTTCACATCAGACGGGAAGAGCGCTCTGGTCAGAAGTTaGAGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTTGGTGATATTC +
Preference number: 5 (lower is better)
Translates to: PITFTSDGKSALVRS*RFPVQRRRLRLVIF
Trigger: GAATATCACCAACCTCAGCCTCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGCGCTCTTCCCGTCTGATGTGAAGGTGATGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp ATGAAGCAGGAACACACCAGGGCATCCACGACTTCGTCTTTGGAATaGAACTCAGACACCAGCACGTTCTCCCCATCCGACACCCTGGTG +
Preference number: 5 (lower is better)
Translates to: MKQEHTRASTTSSLE*NSDTSTFSPSDTLV
Trigger: CACCAGGGTGTCGGATGGGGAGAACGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGATGCCCTGGTGTGTTCCTGCTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp TGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCTCCACGACTTCGTCTTaGGAATGGAACTCAGACACC +
Preference number: 5 (lower is better)
Translates to: CHHPSSDPKSSGNNREGCSTTSS*EWNSDT
Trigger: GGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGA...GCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp TGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGATGCTTGGTGGACTTGACTTaGGGGCAGATGTCATGCTCA +
Preference number: 5 (lower is better)
Translates to: CHHPSSDPKSSGNNREGCLVDLT*GQMSCS
Trigger: TGAGCATGACATCTGCCCCAAAGTCAAGTCCACCAA...GCATCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS-3UTR CAA 90 bp GGCTGTCACCACCCAAGCTCTGACCCTAAGAGCTCTGGGAACAACCGGGAGGGAAAGAAGTTGGTGGACTaGACTTTGGGGCAGATGTCA +
Preference number: 5 (lower is better)
Translates to: GCHHPSSDPKSSGNNREGKKLVD*TLGQMS
Trigger: TGACATCTGCCCCAAAGTCAAGTCCACCAACTTCTT...TCCCTCCCGGTTGTTCCCAGAGCTCTTAGGGTCAGAGCTTGGGTGGTGACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS TCA 90 bp GAACTCAGACACCAGCACGTTCTCCCCATCCGACACCCTGGTGAGTaGGATGTGAACCTTGCCAGAAATGACCTGGTGGACATTGTCTGG +
Preference number: 5 (lower is better)
Translates to: ELRHQHVLPIRHPGE*DVNLARNDLVDIVW
Trigger: CCAGACAATGTCCACCAGGTCATTTCTGGCAAGGTTCACATCTCACTCACCAGGGTGTCGGATGGGGAGAACGTGCTGGTGTCTGAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS TCA 90 bp GGTGGACTTGACTTTGGGGCAGATGTCATGCTCACCGTAGAAAGGTaGCACCGTGATGGTGGTTTTGGCATCCAGCACAGGGACGTTGTC +
Preference number: 5 (lower is better)
Translates to: GGLDFGADVMLTVER*HRDGGFGIQHRDVV
Trigger: GACAACGTCCCTGTGCTGGATGCCAAAACCACCATCACGGTGTCACCTTTCTACGGTGAGCATGACATCTGCCCCAAAGTCAAGTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp GCACAAACCTGGGATGTCGCCCATTGTAGCCACTGGATATCATCCTaGATATCAGGGAGCCATGTCACCAGCCTGTGGACTGCAGCGATA +
Preference number: 5 (lower is better)
Translates to: AQTWDVAHCSHWISS*ISGSHVTSLWTAAI
Trigger: TATCGCTGCAGTCCACAGGCTGGTGACATGGCTCCCTGATATCCAGGATGATATCCAGTGGCTACAATGGGCGACATCCCAGGTTTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp ATCGTCATTCGGGCACAAACCTGGGATGTCGCCCATTGTAGCCACTaGATATCATCCTGGATATCAGGGAGCCATGTCACCAGCCTGTGG +
Preference number: 5 (lower is better)
Translates to: IVIRAQTWDVAHCSH*ISSWISGSHVTSLW
Trigger: CCACAGGCTGGTGACATGGCTCCCTGATATCCAGGATGATATCCAGTGGCTACAATGGGCGACATCCCAGGTTTGTGCCCGAATGACGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp ACCTTGCCAGAAATGACCTGGTGGACATTGTCTGGGAGGCTCTCCTaGAGCCCGTCTCTGATGCACTTGTTAATGTTGAAGAACGGGTGG +
Preference number: 5 (lower is better)
Translates to: TLPEMTWWTLSGRLS*SPSLMHLLMLKNGW
Trigger: CCACCCGTTCTTCAACATTAACAAGTGCATCAGAGACGGGCTCCAGGAGAGCCTCCCAGACAATGTCCACCAGGTCATTTCTGGCAAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 90 bp AGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTTGGTGATATTCACGTaGAAGAAGTTGGTGGACTTGACTTTGGGGCAGATGTCATGCTCA +
Preference number: 5 (lower is better)
Translates to: RFPVQRRRLRLVIFT*KKLVDLTLGQMSCS
Trigger: TGAGCATGACATCTGCCCCAAAGTCAAGTCCACCAACTTCTTCCACGTGAATATCACCAACCTCAGCCTCCGCCTCTGCACTGGGAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 72 bp CCGCGTGCAGTGCACCGGCCGAGCAGCCAAAGAAAGTaGGCGCATCGCGGAGGAGGTGCGGGGCGCGCTCGC +
Preference number: 6 (lower is better)
Translates to: PRAVHRPSSQRK*AHRGGGAGRAR
Trigger: GCGAGCGCGCCCCGCACCTCCTCCGCGATGCGCGCACTTTCTTTGGCTGCTCGGCCGGTGCACTGCACGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 72 bp GAGCAGCCAAAGAAAGTGCGCGCATCGCGGAGGAGGTaGGGGGCGCGCTCGCTCAGACATAGCGTAGCCCCG +
Preference number: 6 (lower is better)
Translates to: EQPKKVRASRRR*GARSLRHSVAP
Trigger: CGGGGCTACGCTATGTCTGAGCGAGCGCGCCCCGCACCTCCTCCGCGATGCGCGCACTTTCTTTGGCTGCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 72 bp AGGACAGACTCAGGCTGCGCTGTGGCCCGTTACAGATaGCATTCTCCTCCAGGAACCGGAAGGCGTCCAGGT +
Preference number: 6 (lower is better)
Translates to: RTDSGCAVARYR*HSPPGTGRRPG
Trigger: ACCTGGACGCCTTCCGGTTCCTGGAGGAGAATGGCATCTGTAACGGGCCACAGCGCAGCCTGAGTCTGTCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS GCA 72 bp AGCAGGCTTCTGGCGCCACCAAGGACAGACTCAGGCTaGGCTGTGGCCCGTTACAGATGCCATTCTCCTCCA +
Preference number: 6 (lower is better)
Translates to: SRLLAPPRTDSG*AVARYRCHSPP
Trigger: TGGAGGAGAATGGCATCTGTAACGGGCCACAGCGCAGCCTGAGTCTGTCCTTGGTGGCGCCAGAAGCCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp TTCTGGCGCCACCAAGGACAGACTCAGGCTGCGCTGTaGCCCGTTACAGATGCCATTCTCCTCCAGGAACCG +
Preference number: 6 (lower is better)
Translates to: FWRHQGQTQAAL*PVTDAILLQEP
Trigger: CGGTTCCTGGAGGAGAATGGCATCTGTAACGGGCCACAGCGCAGCCTGAGTCTGTCCTTGGTGGCGCCAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 72 bp ACCGTGATGGTGGTTTTGGCATCCAGCACAGGGACGTaGTCGCTCACTCCTCCGTCCACGTACCGCTCGCCT +
Preference number: 6 (lower is better)
Translates to: TVMVVLASSTGT*SLTPPSTYRSP
Trigger: AGGCGAGCGGTACGTGGACGGAGGAGTGAGCGACAACGTCCCTGTGCTGGATGCCAAAACCACCATCACGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp TCATCCTGGATATCAGGGAGCCATGTCACCAGCCTGTaGACTGCAGCGATAGCCGACTCCACGGGCAGACTG +
Preference number: 6 (lower is better)
Translates to: SSWISGSHVTSL*TAAIADSTGRL
Trigger: CAGTCTGCCCGTGGAGTCGGCTATCGCTGCAGTCCACAGGCTGGTGACATGGCTCCCTGATATCCAGGATGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 90 bp AAAGGTGACACCGTGATGGTGGTTTTGGCATCCAGCACAGGGACGTaGTCGCTCACTCCTCCGTCCACGTACCGCTCGCCTCGGAAGGAA +
Preference number: 6 (lower is better)
Translates to: KGDTVMVVLASSTGT*SLTPPSTYRSPRKE
Trigger: TTCCTTCCGAGGCGAGCGGTACGTGGACGGAGGAGTGAGCGACAACGTCCCTGTGCTGGATGCCAAAACCACCATCACGGTGTCACCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp TTCACATCAGACGGGAAGAGCGCTCTGGTCAGAAGTTaGAGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTTG +
Preference number: 6 (lower is better)
Translates to: FTSDGKSALVRS*RFPVQRRRLRL
Trigger: CAACCTCAGCCTCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGCGCTCTTCCCGTCTGATGTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp CTCCCATCACCTTCACATCAGACGGGAAGAGCGCTCTaGTCAGAAGTTGGAGGTTCCCAGTGCAGAGGCGGA +
Preference number: 6 (lower is better)
Translates to: LPSPSHQTGRAL*SEVGGSQCRGG
Trigger: TCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGCGCTCTTCCCGTCTGATGTGAAGGTGATGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp GTCTCCCACAAGTTTGCCATTTTCCAAGCAGGCTTCTaGCGCCACCAAGGACAGACTCAGGCTGCGCTGTGG +
Preference number: 6 (lower is better)
Translates to: VSHKFAIFQAGF*RHQGQTQAALW
Trigger: CCACAGCGCAGCCTGAGTCTGTCCTTGGTGGCGCCAGAAGCCTGCTTGGAAAATGGCAAACTTGTGGGAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 72 bp CTTCACATCAGACGGGAAGAGCGCTCTGGTCAGAAGTaGGAGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTT +
Preference number: 6 (lower is better)
Translates to: LHIRREERSGQK*EVPSAEAEAEV
Trigger: AACCTCAGCCTCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGCGCTCTTCCCGTCTGATGTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 90 bp AGGGGAATGAAGCAGGAACACACCAGGGCATCCACGACTTCGTCTTaGGAATGGAACTCAGACACCAGCACGTTCTCCCCATCCGACACC +
Preference number: 6 (lower is better)
Translates to: RGMKQEHTRASTTSS*EWNSDTSTFSPSDT
Trigger: GGTGTCGGATGGGGAGAACGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGATGCCCTGGTGTGTTCCTGCTTCATTCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 90 bp TCCCATCACCTTCACATCAGACGGGAAGAGCGCTCTGGTCAGAAGTaGGAGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTTGGTGATATT +
Preference number: 6 (lower is better)
Translates to: SHHLHIRREERSGQK*EVPSAEAEAEVGDI
Trigger: AATATCACCAACCTCAGCCTCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGCGCTCTTCCCGTCTGATGTGAAGGTGATGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 90 bp ACAGATGCCATTCTCCTCCAGGAACCGGAAGGCGTCCAGGTACCCTaGATAGCACAGCTCTCCCATCACCTTCACATCAGACGGGAAGAG +
Preference number: 6 (lower is better)
Translates to: TDAILLQEPEGVQVP*IAQLSHHLHIRREE
Trigger: CTCTTCCCGTCTGATGTGAAGGTGATGGGAGAGCTGTGCTATCAAGGGTACCTGGACGCCTTCCGGTTCCTGGAGGAGAATGGCATCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp GAACACACCAGGGCATCCACGACTTCGTCTTTGGAATaGAACTCAGACACCAGCACGTTCTCCCCATCCGAC +
Preference number: 6 (lower is better)
Translates to: EHTRASTTSSLE*NSDTSTFSPSD
Trigger: GTCGGATGGGGAGAACGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGATGCCCTGGTGTGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp CGGGCACAAACCTGGGATGTCGCCCATTGTAGCCACTaGATATCATCCTGGATATCAGGGAGCCATGTCACC +
Preference number: 6 (lower is better)
Translates to: RAQTWDVAHCSH*ISSWISGSHVT
Trigger: GGTGACATGGCTCCCTGATATCCAGGATGATATCCAGTGGCTACAATGGGCGACATCCCAGGTTTGTGCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 90 bp CTGGTCAGAAGTTGGAGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTaGGTGATATTCACGTGGAAGAAGTTGGTGGACTTGACTTTGGGG +
Preference number: 6 (lower is better)
Translates to: LVRSWRFPVQRRRLR*VIFTWKKLVDLTLG
Trigger: CCCCAAAGTCAAGTCCACCAACTTCTTCCACGTGAATATCACCAACCTCAGCCTCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS TCA 72 bp GGCAGATGTCATGCTCACCGTAGAAAGGTGACACCGTaGTGGTGGTTTTGGCATCCAGCACAGGGACGTTGT +
Preference number: 6 (lower is better)
Translates to: GRCHAHRRKVTP*WWFWHPAQGRC
Trigger: ACAACGTCCCTGTGCTGGATGCCAAAACCACCATCACGGTGTCACCTTTCTACGGTGAGCATGACATCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS TCA 72 bp GACTTTGGGGCAGATGTCATGCTCACCGTAGAAAGGTaGCACCGTGATGGTGGTTTTGGCATCCAGCACAGG +
Preference number: 6 (lower is better)
Translates to: DFGADVMLTVER*HRDGGFGIQHR
Trigger: CCTGTGCTGGATGCCAAAACCACCATCACGGTGTCACCTTTCTACGGTGAGCATGACATCTGCCCCAAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp AGCAGGAACACACCAGGGCATCCACGACTTCGTCTTTaGAATGGAACTCAGACACCAGCACGTTCTCCCCAT +
Preference number: 6 (lower is better)
Translates to: SRNTPGHPRLRL*NGTQTPARSPH
Trigger: ATGGGGAGAACGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGATGCCCTGGTGTGTTCCTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp GTGCAGAGGCGGAGGCTGAGGTTGGTGATATTCACGTaGAAGAAGTTGGTGGACTTGACTTTGGGGCAGATG +
Preference number: 6 (lower is better)
Translates to: VQRRRLRLVIFT*KKLVDLTLGQM
Trigger: CATCTGCCCCAAAGTCAAGTCCACCAACTTCTTCCACGTGAATATCACCAACCTCAGCCTCCGCCTCTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp TGGGATGTCGCCCATTGTAGCCACTGGATATCATCCTaGATATCAGGGAGCCATGTCACCAGCCTGTGGACT +
Preference number: 6 (lower is better)
Translates to: WDVAHCSHWISS*ISGSHVTSLWT
Trigger: AGTCCACAGGCTGGTGACATGGCTCCCTGATATCCAGGATGATATCCAGTGGCTACAATGGGCGACATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 72 bp AAGCAGGAACACACCAGGGCATCCACGACTTCGTCTTaGGAATGGAACTCAGACACCAGCACGTTCTCCCCA +
Preference number: 6 (lower is better)
Translates to: KQEHTRASTTSS*EWNSDTSTFSP
Trigger: TGGGGAGAACGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGATGCCCTGGTGTGTTCCTGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 72 bp AGTTGGAGGTTCCCAGTGCAGAGGCGGAGGCTGAGGTaGGTGATATTCACGTGGAAGAAGTTGGTGGACTTG +
Preference number: 6 (lower is better)
Translates to: SWRFPVQRRRLR*VIFTWKKLVDL
Trigger: CAAGTCCACCAACTTCTTCCACGTGAATATCACCAACCTCAGCCTCCGCCTCTGCACTGGGAACCTCCAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 72 bp AAGCATAGGCTGACTGGCACCTTGTCTCCCACAAGTTaGCCATTTTCCAAGCAGGCTTCTGGCGCCACCAAG +
Preference number: 6 (lower is better)
Translates to: KHRLTGTLSPTS*PFSKQASGATK
Trigger: CTTGGTGGCGCCAGAAGCCTGCTTGGAAAATGGCAAACTTGTGGGAGACAAGGTGCCAGTCAGCCTATGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CCA 72 bp GAAATGACCTGGTGGACATTGTCTGGGAGGCTCTCCTaGAGCCCGTCTCTGATGCACTTGTTAATGTTGAAG +
Preference number: 6 (lower is better)
Translates to: EMTWWTLSGRLS*SPSLMHLLMLK
Trigger: CTTCAACATTAACAAGTGCATCAGAGACGGGCTCCAGGAGAGCCTCCCAGACAATGTCCACCAGGTCATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6
CDS CAA 72 bp ATGTTCTCATCTGTAAAGCATAGGCTGACTGGCACCTaGTCTCCCACAAGTTTGCCATTTTCCAAGCAGGCT +
Preference number: 6 (lower is better)
Translates to: MFSSVKHRLTGT*SPTSLPFSKQA
Trigger: AGCCTGCTTGGAAAATGGCAAACTTGTGGGAGACAAGGTGCCAGTCAGCCTATGCTTTACAGATGAGAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045289.6