Pregenerated sensors for PNP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000115338Ensembl transcript IDs: ENSMUST00000048615.13, ENSMUST00000178092.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCAGTCTTGTTCAAGTGTTTATCTCTCACCTTAGCACAGGATGTTaGCATGGCTTATTACTGGATGAGGCTGGAAGGCAGATATTGTAC | + |
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Preference number: 1 (lower is better) Translates to: CSLVQVFISHLSTGC*HGLLLDEAGRQILY Trigger: GTACAATATCTGCCTTCCAGCCTCATCCAGTAATAAGCCATGCCAACATCCTGTGCTAAGGTGAGAGATAAACACTTGAACAAGACTGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CAA 90 bp | GGATGTTGGCATGGCTTATTACTGGATGAGGCTGGAAGGCAGATATaGTACAGAAGTCACTACCCTCATAATTTTCATGTCGTCTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: GCWHGLLLDEAGRQI*YRSHYPHNFHVVSR Trigger: CCTAGAGACGACATGAAAATTATGAGGGTAGTGACTTCTGTACAATATCTGCCTTCCAGCCTCATCCAGTAATAAGCCATGCCAACATCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR TCA 90 bp | AGACTGGGCCTTAGAACAGTAGAACAATTCCAGCTCTTCCAGAGGAATGAAAGTACAACATCTGGAAAGTaGAGGGTAAGCTCCTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: RLGLRTVEQFQLFQRNESTTSGK*RVSSSF Trigger: GAAAGAGGAGCTTACCCTTCACTTTCCAGATGTTGT...ACTTTCATTCCTCTGGAAGAGCTGGAATTGTTCTACTGTTCTAAGGCCCAGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178092.2 |
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| 3UTR-3UTR CCA 90 bp | TACTGGATGAGGCTGGAAGGCAGATATTGTACAGAAGTCACTACCCTCATAATTGTTGGCTGTCTCCATTaGACGTTGTGCAGTATATGC | + |
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Preference number: 2 (lower is better) Translates to: YWMRLEGRYCTEVTTLIIVGCLH*TLCSIC Trigger: GCATATACTGCACAACGTCCAATGGAGACAGCCAAC...AATTATGAGGGTAGTGACTTCTGTACAATATCTGCCTTCCAGCCTCATCCAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR TCA 90 bp | TGTACAGAAGTCACTACCCTCATAATTTTCATGTCGTCTCTAGGGTGTATTTTCGGAGAACGTGGGAAATaGAGGCTAGGAACAAGTCTG | + |
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Preference number: 2 (lower is better) Translates to: CTEVTTLIIFMSSLGCIFGERGK*RLGTSL Trigger: CAGACTTGTTCCTAGCCTTCATTTCCCACGTTCTCC...GAAAATACACCCTAGAGACGACATGAAAATTATGAGGGTAGTGACTTCTGTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CAA 90 bp | GGTGTATTTTCACTTCTAAATGATTTGAACTTTGGGTTCCTGAGGTaGGCTGTCTCCATTGGACGTTGTGCAGTATATGCTAGAATCCTG | + |
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Preference number: 2 (lower is better) Translates to: GVFSLLNDLNFGFLR*AVSIGRCAVYARIL Trigger: CAGGATTCTAGCATATACTGCACAACGTCCAATGGAGACAGCCAACCTCAGGAACCCAAAGTTCAAATCATTTAGAAGTGAAAATACACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR CCA 90 bp | TCACTTCTAAATGATTTGAACTTTGGGTTCCTGAGGTTGGCTGTCTCCATTGGACTTTACAGGCTTGGTTaGAGTTGGAATGAATGTAGC | + |
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Preference number: 2 (lower is better) Translates to: SLLNDLNFGFLRLAVSIGLYRLG*SWNECS Trigger: GCTACATTCATTCCAACTCCAACCAAGCCTGTAAAG...TCCAATGGAGACAGCCAACCTCAGGAACCCAAAGTTCAAATCATTTAGAAGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR TCA 90 bp | TGTACAGAAGTCACTACCCTCATAATTTTCATGTCGTCTCTAGGGTGTATTTTCACAAGAGTAAGCACATaGAGAGCAGTTTCCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: CTEVTTLIIFMSSLGCIFTRVST*RAVSFL Trigger: GAGGAAGGAAACTGCTCTTCATGTGCTTACTCTTGT...GAAAATACACCCTAGAGACGACATGAAAATTATGAGGGTAGTGACTTCTGTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR CCA 90 bp | TGTACAGAAGTCACTACCCTCATAATTTTCATGTCGTCTCTAGGGTGTATTTTCCAGATACTCAAGCAATaGAGTAAATGGAGAACGTGG | + |
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Preference number: 2 (lower is better) Translates to: CTEVTTLIIFMSSLGCIFQILKQ*SKWRTW Trigger: CCACGTTCTCCATTTACTCCATTGCTTGAGTATCTG...GAAAATACACCCTAGAGACGACATGAAAATTATGAGGGTAGTGACTTCTGTACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CAA 90 bp | GGCCAGATTAGAGCTGGATCGAAGGTGAATATTCCCAACTCAAGATaGAGATTAAAGATGTGTCTTCCTACCTCAAAGATTCAGATTAAA | + |
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Preference number: 2 (lower is better) Translates to: GQIRAGSKVNIPNSR*RLKMCLPTSKIQIK Trigger: TTTAATCTGAATCTTTGAGGTAGGAAGACACATCTTTAATCTCAATCTTGAGTTGGGAATATTCACCTTCGATCCAGCTCTAATCTGGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | AGGAGTGTGAACCAACTTTACAGGCTTGGTTGGAGTTaGAATGAATGTAGCCATCACCATGACAAATGGCGG | + |
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Preference number: 3 (lower is better) Translates to: RSVNQLYRLGWS*NECSHHHDKWR Trigger: CCGCCATTTGTCATGGTGATGGCTACATTCATTCCAACTCCAACCAAGCCTGTAAAGTTGGTTCACACTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | CTCACCTTAGCACAGGATGTTGGCATGGCTTATTACTaGATGAGGCTGGAAGGCAGATATTGTACAGAAGTC | + |
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Preference number: 3 (lower is better) Translates to: LTLAQDVGMAYY*MRLEGRYCTEV Trigger: GACTTCTGTACAATATCTGCCTTCCAGCCTCATCCAGTAATAAGCCATGCCAACATCCTGTGCTAAGGTGAG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | GTTCAAGTGTTTATCTCTCACCTTAGCACAGGATGTTaGCATGGCTTATTACTGGATGAGGCTGGAAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: VQVFISHLSTGC*HGLLLDEAGRQ Trigger: CTGCCTTCCAGCCTCATCCAGTAATAAGCCATGCCAACATCCTGTGCTAAGGTGAGAGATAAACACTTGAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | CCACTTTCCTCTCACCCACATTTCCCCCTTAAATGTTaGGTCCCAGCAAGAGTTTGGAAATATCGTAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: PLSSHPHFPLKC*VPARVWKYRSH Trigger: ATGGCTACGATATTTCCAAACTCTTGCTGGGACCCAACATTTAAGGGGGAAATGTGGGTGAGAGGAAAGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR TCA 72 bp | CATGTCTGTCATCTCCAAGATGTAGAAGGTACTGTTTaGAGGCATATATCTCAAGTGTGGGAGGAATGGGCT | + |
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Preference number: 3 (lower is better) Translates to: HVCHLQDVEGTV*RHISQVWEEWA Trigger: AGCCCATTCCTCCCACACTTGAGATATATGCCTTCAAACAGTACCTTCTACATCTTGGAGATGACAGACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR TCA 72 bp | ATAGCCATTCCATGGTGTTTAAGCAGAGAAGGAGTGTaGACCAACTTTACAGGCTTGGTTGGAGTTGGAATG | + |
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Preference number: 3 (lower is better) Translates to: IAIPWCLSREGV*TNFTGLVGVGM Trigger: CATTCCAACTCCAACCAAGCCTGTAAAGTTGGTTCACACTCCTTCTCTGCTTAAACACCATGGAATGGCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | AGAAGTGAGATCTGTGAGATGCAGATACTCAAGCAATaGAGTAAATGGAGAACGTGGGAAATGAAGGCTAGG | + |
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Preference number: 3 (lower is better) Translates to: RSEICEMQILKQ*SKWRTWEMKAR Trigger: CCTAGCCTTCATTTCCCACGTTCTCCATTTACTCCATTGCTTGAGTATCTGCATCTCACAGATCTCACTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | CAGAGAAGGAGTGTGAACCAACTTTACAGGCTTGGTTaGAGTTGGAATGAATGTAGCCATCACCATGACAAA | + |
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Preference number: 3 (lower is better) Translates to: QRRSVNQLYRLG*SWNECSHHHDK Trigger: TTTGTCATGGTGATGGCTACATTCATTCCAACTCCAACCAAGCCTGTAAAGTTGGTTCACACTCCTTCTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | ATCTGTGAGATGCAGATACTCAAGCAATGGAGTAAATaGAGAACGTGGGAAATGAAGGCTAGGAACAAGTCT | + |
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Preference number: 3 (lower is better) Translates to: ICEMQILKQWSK*RTWEMKARNKS Trigger: AGACTTGTTCCTAGCCTTCATTTCCCACGTTCTCCATTTACTCCATTGCTTGAGTATCTGCATCTCACAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR CAA 90 bp | TCCATGGTGTTTAAGCAGAGAAGGAGTGTGAACCAACTTTACAGGCTTGGTTGGTGTAGAAGGTACTGTTaGAAGGCATATATCTCAAGT | + |
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Preference number: 3 (lower is better) Translates to: SMVFKQRRSVNQLYRLGWCRRYC*KAYISS Trigger: ACTTGAGATATATGCCTTCAAACAGTACCTTCTACA...CCAACCAAGCCTGTAAAGTTGGTTCACACTCCTTCTCTGCTTAAACACCATGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CCA 72 bp | ATGCAGATACTCAAGCAATGGAGTAAATGGAGAACGTaGGAAATGAAGGCTAGGAACAAGTCTGAAAGAAGT | + |
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Preference number: 3 (lower is better) Translates to: MQILKQWSKWRT*EMKARNKSERS Trigger: ACTTCTTTCAGACTTGTTCCTAGCCTTCATTTCCCACGTTCTCCATTTACTCCATTGCTTGAGTATCTGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR CAA 90 bp | CTCAAGCAATGGAGTAAATGGAGAACGTGGGAAATGAAGGCTAGGAACAAGTCTGGAATGAAAGTTAATTaGAGAAGGCAACTAAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: LKQWSKWRTWEMKARNKSGMKVN*RRQLSK Trigger: CTTGCTTAGTTGCCTTCTCAAATTAACTTTCATTCC...AGACTTGTTCCTAGCCTTCATTTCCCACGTTCTCCATTTACTCCATTGCTTGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR CAA 90 bp | TCACTTCTAAATGATTTGAACTTTGGGTTCCTGAGGTTGGCTGTCTCCATTGGACCAATCATAGTCAAGTaGATAACCAAGAATAGCCAT | + |
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Preference number: 3 (lower is better) Translates to: SLLNDLNFGFLRLAVSIGPIIVK*ITKNSH Trigger: ATGGCTATTCTTGGTTATCAACTTGACTATGATTGG...TCCAATGGAGACAGCCAACCTCAGGAACCCAAAGTTCAAATCATTTAGAAGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR-3UTR CAA 90 bp | TCTTCCAGAGGAATGAAAGTTAATTTGAGAAGGCAACTAAGCAAGAAGACTGGGGGAATGAAAGTTAATTaGAGAAGGCAACTAAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: SSRGMKVNLRRQLSKKTGGMKVN*RRQLSK Trigger: CTTGCTTAGTTGCCTTCTCAAATTAACTTTCATTCC...CCCAGTCTTCTTGCTTAGTTGCCTTCTCAAATTAACTTTCATTCCTCTGGAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR GCA 90 bp | GTGACTTCATCAAGGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCGAGCCCACAGTGCCTTaGGACGATAACTTCTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: VTSSRKQSRELLGPHQGSEPTVP*DDNFWD Trigger: GTCCCAGAAGTTATCGTCGCAAGGCACTGTGGGCTC...GCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCCTTGATGAAGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR TCA 90 bp | GTGACTTCATCAAGGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCCTCCAGCAGCATTGGTaGCCACCAAAGTTTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: VTSSRKQSRELLGPHQGSLQQHW*PPKFPH Trigger: GTGTGGAAACTTTGGTGGTCACCAATGCTGCTGGAG...GCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCCTTGATGAAGTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR TCA 90 bp | CATCAAGGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCAGCGGAGAGAAACCAGGTAGGTTaGTGTGATCACGGATCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HQGNRVESYLDPTRGAAERNQVG*CDHGSA Trigger: TGCTGATCCGTGATCACATCAACCTACCTGGTTTCT...CTCCGCTGCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCCTTGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR CCA 90 bp | GTGACTTCATCAAGGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCCCACAGTCTCAAAGTTaGGGCCTGCCAACATCACGT | + |
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Preference number: 4 (lower is better) Translates to: VTSSRKQSRELLGPHQGSPQSQS*GLPTSR Trigger: ACGTGATGTTGGCAGGCCCCAACTTTGAGACTGTGG...GCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCCTTGATGAAGTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR CCA 90 bp | TCTTCCTTATATAGCCTCCCATCAGCAGGCACAGGCCAGATTAGAGCTGGATCGCCACAGTCTCAAAGTTaGGGCCTGCCAACATCACGT | + |
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Preference number: 4 (lower is better) Translates to: SSLYSLPSAGTGQIRAGSPQSQS*GLPTSR Trigger: ACGTGATGTTGGCAGGCCCCAACTTTGAGACTGTGG...CGATCCAGCTCTAATCTGGCCTGTGCCTGCTGATGGGAGGCTATATAAGGAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR GCA 90 bp | CCCTTGCTACTCACGCACCAACTCATCTCCATTCTTAGCTGCTTTTGGAACATGGAGCCCACAGTGCCTTaGGACGATAACTTCTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: PLLLTHQLISILSCFWNMEPTVP*DDNFWD Trigger: GTCCCAGAAGTTATCGTCGCAAGGCACTGTGGGCTC...CATGTTCCAAAAGCAGCTAAGAATGGAGATGAGTTGGTGCGTGAGTAGCAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR CCA 90 bp | CATCAAGGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCAGCGGAGGAACTTCCATGTGATTaGCCTTCTCCAAGTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: HQGNRVESYLDPTRGAAEELPCD*PSPSSH Trigger: ATGAGAACTTGGAGAAGGCCAATCACATGGAAGTTC...CTCCGCTGCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCCTTGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR GCA 90 bp | GTGACTTCATCAAGGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCTCATCACACAGCATCTaGCATTCAGCAATCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: VTSSRKQSRELLGPHQGSSSHSI*HSAIQT Trigger: TGTTTGGATTGCTGAATGGCAGATGCTGTGTGATGA...GCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCCTTGATGAAGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR TCA 90 bp | CAGTGCTGGAGAAGTGAGATCTGTGAGATGCAGATACTCAAGCAATGGAGTAAACTCCAGCAGCATTGGTaGCCACCAAAGTTTCCACAC | + |
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Preference number: 4 (lower is better) Translates to: QCWRSEICEMQILKQWSKLQQHW*PPKFPH Trigger: GTGTGGAAACTTTGGTGGTCACCAATGCTGCTGGAG...TTTACTCCATTGCTTGAGTATCTGCATCTCACAGATCTCACTTCTCCAGCACTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR GCA 90 bp | TATTACTGGATGAGGCTGGAAGGCAGATATTGTACAGAAGTCACTACCCTCATACCTTTCCAATGTCTGTaGAGCTGCTTTCCCGGCATC | + |
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Preference number: 4 (lower is better) Translates to: YYWMRLEGRYCTEVTTLIPFQCL*SCFPGI Trigger: GATGCCGGGAAAGCAGCTGCACAGACATTGGAAAGG...TATGAGGGTAGTGACTTCTGTACAATATCTGCCTTCCAGCCTCATCCAGTAATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR TCA 90 bp | TATATCTCAAGTGTGGGAGGAATGGGCTCCAGCTCTTCCAGAGGAATGAAAGTTTTTGTTTCCAGGCACTaGAAGCCTTCTGCCTCATAT | + |
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Preference number: 4 (lower is better) Translates to: YISSVGGMGSSSSRGMKVFVSRH*KPSASY Trigger: ATATGAGGCAGAAGGCTTTCAGTGCCTGGAAACAAA...AACTTTCATTCCTCTGGAAGAGCTGGAGCCCATTCCTCCCACACTTGAGATATA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CAA 72 bp | ACATGTCTGTCATCTCCAAGATGTAGAAGGTACTGTTaGAAGGCATATATCTCAAGTGTGGGAGGAATGGGC | + |
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Preference number: 4 (lower is better) Translates to: TCLSSPRCRRYC*KAYISSVGGMG Trigger: GCCCATTCCTCCCACACTTGAGATATATGCCTTCAAACAGTACCTTCTACATCTTGGAGATGACAGACATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR TCA 90 bp | TCTTCCAGAGGAATGAAAGTTAATTTGAGAAGGCAACTAAGCAAGAAGACTGGGAGAAACCAGGTAGGTTaGTGTGATCACGGATCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SSRGMKVNLRRQLSKKTGRNQVG*CDHGSA Trigger: TGCTGATCCGTGATCACATCAACCTACCTGGTTTCT...CCCAGTCTTCTTGCTTAGTTGCCTTCTCAAATTAACTTTCATTCCTCTGGAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| 3UTR CAA 72 bp | TCACTTCTAAATGATTTGAACTTTGGGTTCCTGAGGTaGGCTGTCTCCATTGGACGTTGTGCAGTATATGCT | + |
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Preference number: 4 (lower is better) Translates to: SLLNDLNFGFLR*AVSIGRCAVYA Trigger: AGCATATACTGCACAACGTCCAATGGAGACAGCCAACCTCAGGAACCCAAAGTTCAAATCATTTAGAAGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR TCA 90 bp | TCTTCCAGAGGAATGAAAGTTAATTTGAGAAGGCAACTAAGCAAGAAGACTGGGCTTGTTCGTAATGAGTaGGAAACCAAAGACACGGAG | + |
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Preference number: 4 (lower is better) Translates to: SSRGMKVNLRRQLSKKTGLVRNE*ETKDTE Trigger: CTCCGTGTCTTTGGTTTCTCACTCATTACGAACAAG...CCCAGTCTTCTTGCTTAGTTGCCTTCTCAAATTAACTTTCATTCCTCTGGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR GCA 90 bp | TATTACTGGATGAGGCTGGAAGGCAGATATTGTACAGAAGTCACTACCCTCATATCATCACACAGCATCTaGCATTCAGCAATCCAAACA | + |
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Preference number: 4 (lower is better) Translates to: YYWMRLEGRYCTEVTTLISSHSI*HSAIQT Trigger: TGTTTGGATTGCTGAATGGCAGATGCTGTGTGATGA...TATGAGGGTAGTGACTTCTGTACAATATCTGCCTTCCAGCCTCATCCAGTAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| 3UTR CAA 72 bp | CATGGCTTATTACTGGATGAGGCTGGAAGGCAGATATaGTACAGAAGTCACTACCCTCATAATTTTCATGTC | + |
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Preference number: 4 (lower is better) Translates to: HGLLLDEAGRQI*YRSHYPHNFHV Trigger: GACATGAAAATTATGAGGGTAGTGACTTCTGTACAATATCTGCCTTCCAGCCTCATCCAGTAATAAGCCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR TCA 90 bp | TGTACAGAAGTCACTACCCTCATAATTTTCATGTCGTCTCTAGGGTGTATTTTCCTTGTTCGTAATGAGTaGGAAACCAAAGACACGGAG | + |
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Preference number: 4 (lower is better) Translates to: CTEVTTLIIFMSSLGCIFLVRNE*ETKDTE Trigger: CTCCGTGTCTTTGGTTTCTCACTCATTACGAACAAG...GAAAATACACCCTAGAGACGACATGAAAATTATGAGGGTAGTGACTTCTGTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR CAA 90 bp | GGAAACAGAGTAGAGAGCTACTTGGACCCCACCAGGGGAGCAGCGGAGCACTCCGCCACAGTCTCAAAGTaGGGGCCTGCCAACATCACG | + |
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Preference number: 5 (lower is better) Translates to: GNRVESYLDPTRGAAEHSATVSK*GPANIT Trigger: CGTGATGTTGGCAGGCCCCAACTTTGAGACTGTGGC...GGAGTGCTCCGCTGCTCCCCTGGTGGGGTCCAAGTAGCTCTCTACTCTGTTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS-3UTR CAA 90 bp | GTACTGTTTGAAGGCATATATCTCAAGTGTGGGAGGAATGGGCTCCAGCTCTTCGCCACAGTCTCAAAGTaGGGGCCTGCCAACATCACG | + |
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Preference number: 5 (lower is better) Translates to: VLFEGIYLKCGRNGLQLFATVSK*GPANIT Trigger: CGTGATGTTGGCAGGCCCCAACTTTGAGACTGTGGC...GAAGAGCTGGAGCCCATTCCTCCCACACTTGAGATATATGCCTTCAAACAGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR CAA 90 bp | CTCAAGCAATGGAGTAAATGGAGAACGTGGGAAATGAAGGCTAGGAACAAGTCTCATATGGAACCGGCCTaGCATCATCACACAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: LKQWSKWRTWEMKARNKSHMEPA*HHHTAS Trigger: AGATGCTGTGTGATGATGCAAGGCCGGTTCCATATG...AGACTTGTTCCTAGCCTTCATTTCCCACGTTCTCCATTTACTCCATTGCTTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048615.13 |
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| CDS-3UTR CAA 90 bp | TCTTCCAGAGGAATGAAAGTTAATTTGAGAAGGCAACTAAGCAAGAAGACTGGGCATATGGAACCGGCCTaGCATCATCACACAGCATCT | + |
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Preference number: 5 (lower is better) Translates to: SSRGMKVNLRRQLSKKTGHMEPA*HHHTAS Trigger: AGATGCTGTGTGATGATGCAAGGCCGGTTCCATATG...CCCAGTCTTCTTGCTTAGTTGCCTTCTCAAATTAACTTTCATTCCTCTGGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS CCA 72 bp | GACACGGAGCCCACAGTGCCTTGCGACGATAACTTCTaGGACTGTGCTCATGCCAACAGCATCTGCCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: DTEPTVPCDDNF*DCAHANSICPQ Trigger: CTGGGGGCAGATGCTGTTGGCATGAGCACAGTCCCAGAAGTTATCGTCGCAAGGCACTGTGGGCTCCGTGTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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| CDS CCA 72 bp | TCTTTAGCAGACGACTCTCTGCCACAGTCTCAAAGTTaGGGCCTGCCAACATCACGTAGGTGCCTTCTTGTA | + |
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Preference number: 6 (lower is better) Translates to: SLADDSLPQSQS*GLPTSRRCLLV Trigger: TACAAGAAGGCACCTACGTGATGTTGGCAGGCCCCAACTTTGAGACTGTGGCAGAGAGTCGTCTGCTAAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000048615.13 ENSMUST00000178092.2 |
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