Pregenerated sensors for PNMA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054383Ensembl transcript IDs: ENSMUST00000061425.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGCTTCGCAACCACCTTGACAGGAAGTGTCACAGCTTCACGTTTGTaGACAGCTGTCAGAGATGTCGCCAGGAGGGCTGGCATCAAGCAT | + |
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Preference number: 1 (lower is better) Translates to: SFATTLTGSVTASRL*TAVRDVARRAGIKH Trigger: ATGCTTGATGCCAGCCCTCCTGGCGACATCTCTGACAGCTGTGCACAAACGTGAAGCTGTGACACTTCCTGTCAAGGTGGTTGCGAAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR TCA 90 bp | CTGACAATCACACACTTCTGTGAATGTTACAGGAATATGCGGGCCTaGCTTCCCCATCCCATCCCTCAGGAAACAAAACCAAGCCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: LTITHFCECYRNMRA*LPHPIPQETKPSQE Trigger: CTCCTGGCTTGGTTTTGTTTCCTGAGGGATGGGATGGGGAAGTCAGGCCCGCATATTCCTGTAACATTCACAGAAGTGTGTGATTGTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR CAA 90 bp | TGCAGCTTCGCAACCACCTTGACAGGAAGTGTCACAGCTTCACGTTaGTGCACAGCTGTCAGAGATGTCGCCAGGAGGGCTGGCATCAAG | + |
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Preference number: 2 (lower is better) Translates to: CSFATTLTGSVTASR*CTAVRDVARRAGIK Trigger: CTTGATGCCAGCCCTCCTGGCGACATCTCTGACAGCTGTGCACAAACGTGAAGCTGTGACACTTCCTGTCAAGGTGGTTGCGAAGCTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR-3UTR TCA 90 bp | AAACACAAGAGTTTGTACTGTACAGTCTGTGAACCTGGTGCGCGGTTAGCATCAGCTTCGCAACCACCTTaGCAGGAAGTGTCACAGCTT | + |
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Preference number: 2 (lower is better) Translates to: KHKSLYCTVCEPGARLASASQPP*QEVSQL Trigger: AAGCTGTGACACTTCCTGTCAAGGTGGTTGCGAAGC...TGATGCTAACCGCGCACCAGGTTCACAGACTGTACAGTACAAACTCTTGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR GCA 72 bp | ACCACCTTGACAGGAAGTGTCACAGCTTCACGTTTGTaGACAGCTGTCAGAGATGTCGCCAGGAGGGCTGGC | + |
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Preference number: 3 (lower is better) Translates to: TTLTGSVTASRL*TAVRDVARRAG Trigger: GCCAGCCCTCCTGGCGACATCTCTGACAGCTGTGCACAAACGTGAAGCTGTGACACTTCCTGTCAAGGTGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR CCA 72 bp | TTTGTGCACAGCTGTCAGAGATGTCGCCAGGAGGGCTaGCATCAAGCATTCACTTTAGGCAGTAAGGACCAC | + |
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Preference number: 3 (lower is better) Translates to: FVHSCQRCRQEG*HQAFTLGSKDH Trigger: GTGGTCCTTACTGCCTAAAGTGAATGCTTGATGCCAGCCCTCCTGGCGACATCTCTGACAGCTGTGCACAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR TCA 72 bp | ACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTaGGTGGCAGGCTTACTAAAACGTCACAGGTATATC | + |
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Preference number: 3 (lower is better) Translates to: TKPSQEEAGCLL*VAGLLKRHRYI Trigger: GATATACCTGTGACGTTTTAGTAAGCCTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR-3UTR CAA 90 bp | AAACACAAGAGTTTGTACTGTACAGTCTGTGAACCTGGTGCGCGGTTAGCATCAGGACCACCTTTACCGTaGCAGCTCCTGACAATCACA | + |
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Preference number: 3 (lower is better) Translates to: KHKSLYCTVCEPGARLASGPPLP*QLLTIT Trigger: TGTGATTGTCAGGAGCTGCAACGGTAAAGGTGGTCC...TGATGCTAACCGCGCACCAGGTTCACAGACTGTACAGTACAAACTCTTGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR TCA 72 bp | ACACACTTCTGTGAATGTTACAGGAATATGCGGGCCTaGCTTCCCCATCCCATCCCTCAGGAAACAAAACCA | + |
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Preference number: 3 (lower is better) Translates to: THFCECYRNMRA*LPHPIPQETKP Trigger: TGGTTTTGTTTCCTGAGGGATGGGATGGGGAAGTCAGGCCCGCATATTCCTGTAACATTCACAGAAGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR TCA 72 bp | TTAGGCAGTAAGGACCACCTTTACCGTTGCAGCTCCTaGCAATCACACACTTCTGTGAATGTTACAGGAATA | + |
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Preference number: 3 (lower is better) Translates to: LGSKDHLYRCSS*QSHTSVNVTGI Trigger: TATTCCTGTAACATTCACAGAAGTGTGTGATTGTCAGGAGCTGCAACGGTAAAGGTGGTCCTTACTGCCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR GCA 90 bp | CTCAGGAAACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTGAGTGGCAGCCCTCCAGGCCTAGCTaGAAGAGGGCGGCCTCGGCC | + |
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Preference number: 4 (lower is better) Translates to: LRKQNQARRRLGACFEWQPSRPS*KRAASA Trigger: GGCCGAGGCCGCCCTCTTGCAGCTAGGCCTGGAGGG...CTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTTTCCTGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR GCA 90 bp | CTCAGGAAACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTGAGTGGCAGCTGGAAGAGGTTGGGTaGAGGCCCTTCCTCAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LRKQNQARRRLGACFEWQLEEVG*RPFLSP Trigger: GGGGCTGAGGAAGGGCCTGCACCCAACCTCTTCCAG...CTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTTTCCTGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR CCA 90 bp | CTCAGGAAACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTGAGTGGCAGGAGCCCTCCTTTGCCTaGCATCTCCCTGGGTATCAG | + |
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Preference number: 4 (lower is better) Translates to: LRKQNQARRRLGACFEWQEPSFA*HLPGYQ Trigger: CTGATACCCAGGGAGATGCCAGGCAAAGGAGGGCTC...CTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTTTCCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR CCA 90 bp | CACACTTCTGTGAATGTTACAGGAATATGCGGGCCTGACTTCCCCATCCCATCCTTCCGGGCCTGGAGCTaGAGCAGGGTTCTGAAACCC | + |
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Preference number: 4 (lower is better) Translates to: HTSVNVTGICGPDFPIPSFRAWS*SRVLKP Trigger: GGGTTTCAGAACCCTGCTCCAGCTCCAGGCCCGGAA...GGATGGGATGGGGAAGTCAGGCCCGCATATTCCTGTAACATTCACAGAAGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR CAA 72 bp | GCAACCACCTTGACAGGAAGTGTCACAGCTTCACGTTaGTGCACAGCTGTCAGAGATGTCGCCAGGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: ATTLTGSVTASR*CTAVRDVARRA Trigger: AGCCCTCCTGGCGACATCTCTGACAGCTGTGCACAAACGTGAAGCTGTGACACTTCCTGTCAAGGTGGTTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR TCA 90 bp | GTTACAGGAATATGCGGGCCTGACTTCCCCATCCCATCCCTCAGGAAACAAAACGCTGGAGCAGGGTTCTaGAACCCAAGCACACGAGCA | + |
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Preference number: 4 (lower is better) Translates to: VTGICGPDFPIPSLRKQNAGAGF*NPSTRA Trigger: TGCTCGTGTGCTTGGGTTTCAGAACCCTGCTCCAGC...GTTTTGTTTCCTGAGGGATGGGATGGGGAAGTCAGGCCCGCATATTCCTGTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR CAA 72 bp | GCGGTTAGCATCAGAACCTGCAGCTTCGCAACCACCTaGACAGGAAGTGTCACAGCTTCACGTTTGTGCACA | + |
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Preference number: 4 (lower is better) Translates to: AVSIRTCSFATT*TGSVTASRLCT Trigger: TGTGCACAAACGTGAAGCTGTGACACTTCCTGTCAAGGTGGTTGCGAAGCTGCAGGTTCTGATGCTAACCGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR TCA 90 bp | CAGGAATATGCGGGCCTGACTTCCCCATCCCATCCCTCAGGAAACAAAACCAAGACCAACAGAGCTCTCTaGGAGTTCACATCCATTCCC | + |
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Preference number: 4 (lower is better) Translates to: QEYAGLTSPSHPSGNKTKTNRAL*EFTSIP Trigger: GGGAATGGATGTGAACTCTCAGAGAGCTCTGTTGGT...CTTGGTTTTGTTTCCTGAGGGATGGGATGGGGAAGTCAGGCCCGCATATTCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR GCA 90 bp | AAACACAAGAGTTTGTACTGTACAGTCTGTGAACCTGGTGCGCGGTTAGCATCATCCAGAGCCCTCCTTTaGCTGGCATCTCCCTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: KHKSLYCTVCEPGARLASSRALL*LASPWV Trigger: TACCCAGGGAGATGCCAGGCAAAGGAGGGCTCTGGA...TGATGCTAACCGCGCACCAGGTTCACAGACTGTACAGTACAAACTCTTGTGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR TCA 90 bp | CTCAGGAAACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTGAGTGGCAGCGTTATCTTTATCAATaGCCCCCTTGTCTACTACCT | + |
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Preference number: 4 (lower is better) Translates to: LRKQNQARRRLGACFEWQRYLYQ*PPCLLP Trigger: AGGTAGTAGACAAGGGGGTCATTGATAAAGATAACG...CTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTTTCCTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR GCA 90 bp | CACACTTCTGTGAATGTTACAGGAATATGCGGGCCTGACTTCCCCATCCCATCCCAGAAATCTGACCTGTaGATCTCTAGAGCTCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: HTSVNVTGICGPDFPIPSQKSDL*ISRALH Trigger: GTGGAGAGCTCTAGAGATGCACAGGTCAGATTTCTG...GGATGGGATGGGGAAGTCAGGCCCGCATATTCCTGTAACATTCACAGAAGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR CCA 90 bp | AAACACAAGAGTTTGTACTGTACAGTCTGTGAACCTGGTGCGCGGTTAGCATCAATCTGCACCAGTAACTaGAAGAGGTTGGGTGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: KHKSLYCTVCEPGARLASICTSN*KRLGAG Trigger: GCCTGCACCCAACCTCTTCCAGTTACTGGTGCAGAT...TGATGCTAACCGCGCACCAGGTTCACAGACTGTACAGTACAAACTCTTGTGTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR CAA 72 bp | AACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTaGAGTGGCAGGCTTACTAAAACGTCACAGGTATAT | + |
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Preference number: 4 (lower is better) Translates to: NKTKPGGGWVLA*SGRLTKTSQVY Trigger: ATATACCTGTGACGTTTTAGTAAGCCTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| 3UTR CAA 72 bp | AAAACCATCCACAGTGTTAGTAACAAACACAAGAGTTaGTACTGTACAGTCTGTGAACCTGGTGCGCGGTTA | + |
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Preference number: 4 (lower is better) Translates to: KTIHSVSNKHKS*YCTVCEPGARL Trigger: TAACCGCGCACCAGGTTCACAGACTGTACAGTACAAACTCTTGTGTTTGTTACTAACACTGTGGATGGTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CCA 90 bp | TCCTCCTCCTTCTTGGCTTCCTCCTCTCGAATCTGCACCAGTAACTaGAAGAGGTTGGGTGCAGGCCCTTCCTCAGCCCCGGCCAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: SSSFLASSSRICTSN*KRLGAGPSSAPASH Trigger: GTGGCTGGCCGGGGCTGAGGAAGGGCCTGCACCCAACCTCTTCCAGTTACTGGTGCAGATTCGAGAGGAGGAAGCCAAGAAGGAGGAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR CAA 90 bp | GTTACAGGAATATGCGGGCCTGACTTCCCCATCCCATCCCTCAGGAAACAAAACTTCCAGAGCCCTCCTTaGCCTGGCATCTCCCTGGGT | + |
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Preference number: 5 (lower is better) Translates to: VTGICGPDFPIPSLRKQNFQSPP*PGISLG Trigger: ACCCAGGGAGATGCCAGGCAAAGGAGGGCTCTGGAA...GTTTTGTTTCCTGAGGGATGGGATGGGGAAGTCAGGCCCGCATATTCCTGTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR CAA 90 bp | CTCAGGAAACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTGAGTGGCAGAGTAACTGGAAGAGGTaGGGTGCAGGCCCTTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LRKQNQARRRLGACFEWQSNWKR*GAGPSS Trigger: TGAGGAAGGGCCTGCACCCAACCTCTTCCAGTTACT...CTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTTTCCTGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS-3UTR CAA 90 bp | CTCAGGAAACAAAACCAAGCCAGGAGGAGGCTGGGTGCTTGCTTTGAGTGGCAGCTTGTCTACTACCTTTaGCAGCAGAGGCTCCAGACG | + |
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Preference number: 5 (lower is better) Translates to: LRKQNQARRRLGACFEWQLVYYL*QQRLQT Trigger: CGTCTGGAGCCTCTGCTGCAAAAGGTAGTAGACAAG...CTGCCACTCAAAGCAAGCACCCAGCCTCCTCCTGGCTTGGTTTTGTTTCCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS TCA 90 bp | GTCTCATCACAGTTCACAGGGATCCCCCAGACCAACAGAGCTCTCTaGGAGTTCACATCCATTCCCCTGCACCAGTCTTCCAATAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: VSSQFTGIPQTNRAL*EFTSIPLHQSSNSV Trigger: GACACTATTGGAAGACTGGTGCAGGGGAATGGATGTGAACTCTCAGAGAGCTCTGTTGGTCTGGGGGATCCCTGTGAACTGTGATGAGAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS GCA 90 bp | CTCAAACTCTCCATCAACCGCCGTCTCTTTTCTATATCCGACACCTaGCATTCCTCTATGATTTCATTTGAGTGCTCCAGCCAGGAATCA | + |
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Preference number: 5 (lower is better) Translates to: LKLSINRRLFSISDT*HSSMISFECSSQES Trigger: TGATTCCTGGCTGGAGCACTCAAATGAAATCATAGAGGAATGGCAGGTGTCGGATATAGAAAAGAGACGGCGGTTGATGGAGAGTTTGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CAA 72 bp | TCCTCCTCTCGAATCTGCACCAGTAACTGGAAGAGGTaGGGTGCAGGCCCTTCCTCAGCCCCGGCCAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: SSSRICTSNWKR*GAGPSSAPASH Trigger: GTGGCTGGCCGGGGCTGAGGAAGGGCCTGCACCCAACCTCTTCCAGTTACTGGTGCAGATTCGAGAGGAGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS TCA 72 bp | GCTGGCATTTCCGGGCCTGGAGCTGGAGCAGGGTTCTaGAACCCAAGCACACGAGCAACATCTTGCACGGTC | + |
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Preference number: 6 (lower is better) Translates to: AGISGPGAGAGF*NPSTRATSCTV Trigger: GACCGTGCAAGATGTTGCTCGTGTGCTTGGGTTTCAGAACCCTGCTCCAGCTCCAGGCCCGGAAATGCCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CAA 90 bp | TTCTTGGCTTCCTCCTCTCGAATCTGCACCAGTAACTGGAAGAGGTaGGGTGCAGGCCCTTCCTCAGCCCCGGCCAGCCACAACTGCCTT | + |
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Preference number: 6 (lower is better) Translates to: FLASSSRICTSNWKR*GAGPSSAPASHNCL Trigger: AAGGCAGTTGTGGCTGGCCGGGGCTGAGGAAGGGCCTGCACCCAACCTCTTCCAGTTACTGGTGCAGATTCGAGAGGAGGAAGCCAAGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CCA 72 bp | GTTGAGCATCTCTGCTGGCATTTCCGGGCCTGGAGCTaGAGCAGGGTTCTGAAACCCAAGCACACGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: VEHLCWHFRAWS*SRVLKPKHTSN Trigger: GTTGCTCGTGTGCTTGGGTTTCAGAACCCTGCTCCAGCTCCAGGCCCGGAAATGCCAGCAGAGATGCTCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CCA 72 bp | GGGTTTAAACACCACTTTCCAGAGCCCTCCTTTGCCTaGCATCTCCCTGGGTATCAGGGAGTAATCCACTGC | + |
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Preference number: 6 (lower is better) Translates to: GFKHHFPEPSFA*HLPGYQGVIHC Trigger: GCAGTGGATTACTCCCTGATACCCAGGGAGATGCCAGGCAAAGGAGGGCTCTGGAAAGTGGTGTTTAAACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CCA 72 bp | AATATAGTTGAGCATCTCTGCTGGCATTTCCGGGCCTaGAGCTGGAGCAGGGTTCTGAAACCCAAGCACACG | + |
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Preference number: 6 (lower is better) Translates to: NIVEHLCWHFRA*SWSRVLKPKHT Trigger: CGTGTGCTTGGGTTTCAGAACCCTGCTCCAGCTCCAGGCCCGGAAATGCCAGCAGAGATGCTCAACTATATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS GCA 72 bp | TCCGACACCTGCCATTCCTCTATGATTTCATTTGAGTaGTCCAGCCAGGAATCAAAGGTTTCCTCGCCAGGC | + |
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Preference number: 6 (lower is better) Translates to: SDTCHSSMISFE*SSQESKVSSPG Trigger: GCCTGGCGAGGAAACCTTTGATTCCTGGCTGGAGCACTCAAATGAAATCATAGAGGAATGGCAGGTGTCGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS CCA 72 bp | AATAACATTATCCAAAATATAGTTGAGCATCTCTGCTaGCATTTCCGGGCCTGGAGCTGGAGCAGGGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: NNIIQNIVEHLC*HFRAWSWSRVL Trigger: CAGAACCCTGCTCCAGCTCCAGGCCCGGAAATGCCAGCAGAGATGCTCAACTATATTTTGGATAATGTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS GCA 72 bp | TTGAATAACATTATCCAAAATATAGTTGAGCATCTCTaGTGGCATTTCCGGGCCTGGAGCTGGAGCAGGGTT | + |
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Preference number: 6 (lower is better) Translates to: LNNIIQNIVEHL*WHFRAWSWSRV Trigger: AACCCTGCTCCAGCTCCAGGCCCGGAAATGCCAGCAGAGATGCTCAACTATATTTTGGATAATGTTATTCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS TCA 72 bp | GTCTCTTTTCTATATCCGACACCTGCCATTCCTCTATaGTTTCATTTGAGTGCTCCAGCCAGGAATCAAAGG | + |
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Preference number: 6 (lower is better) Translates to: VSFLYPTPAIPL*FHLSAPARNQR Trigger: CCTTTGATTCCTGGCTGGAGCACTCAAATGAAATCATAGAGGAATGGCAGGTGTCGGATATAGAAAAGAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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| CDS GCA 72 bp | TTATCTTTATCAATGACCCCCTTGTCTACTACCTTTTaGAGCAGAGGCTCCAGACGGATAACATACGAAGAT | + |
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Preference number: 6 (lower is better) Translates to: LSLSMTPLSTTF*SRGSRRITYED Trigger: ATCTTCGTATGTTATCCGTCTGGAGCCTCTGCTGCAAAAGGTAGTAGACAAGGGGGTCATTGATAAAGATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061425.3 |
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