RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PNLIPRP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025091

Ensembl transcript IDs: ENSMUST00000026081.5

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp AACATGGCATCCGATGGGTCCAACCGAACTTCCTCGGGCAGGCCTTaGAAACAGGGCTCTGCAGGGTCCAGCCCTGTGATCCTGCCCACA +
Preference number: 5 (lower is better)
Translates to: NMASDGSNRTSSGRP*KQGSAGSSPVILPT
Trigger: TGTGGGCAGGATCACAGGGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CCA 90 bp GGGGGCACTGTCAGTGTGGATCACGTCTACAAACATGGCATCCGATaGGTCCAACCGAACTTCCTCGGGCAGGCCTTGGAAACAGGGCTC +
Preference number: 5 (lower is better)
Translates to: GGTVSVDHVYKHGIR*VQPNFLGQALETGL
Trigger: GAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS TCA 90 bp GTCCATAGCAAACCTCTTTCCCTCCGACTGTGGCCAGCAGAAGGCTaGCGAGCCAGCAGAGCAACATCTGCACGGATGGAAACAGACATC +
Preference number: 5 (lower is better)
Translates to: VHSKPLSLRLWPAEG*RASRATSARMETDI
Trigger: GATGTCTGTTTCCATCCGTGCAGATGTTGCTCTGCTGGCTCGTCAGCCTTCTGCTGGCCACAGTCGGAGGGAAAGAGGTTTGCTATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS TCA 90 bp GTATCAATGTCCTCTGGGGACCAAGGGAATATCTTCGAAGGCCGCTaGATCATCCCTGCCCAGGGCTTGTCATTGGAAAAGCATCCAAGG +
Preference number: 5 (lower is better)
Translates to: VSMSSGDQGNIFEGR*IIPAQGLSLEKHPR
Trigger: CCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGGTCCCCAGAGGACATTGATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS TCA 90 bp GGTGGTTGCAGGCTGCGAAGTTTCGAGTTCCTTCCCATATTCCATTaGTATCAACAATGGTGGAAAGGATGTTTTTCTGACATCCCGGCA +
Preference number: 5 (lower is better)
Translates to: GGCRLRSFEFLPIFH*YQQWWKGCFSDIPA
Trigger: TGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGGAATATGGGAAGGAACTCGAAACTTCGCAGCCTGCAACCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CCA 90 bp ATTGATGGTGGCTGGGTCGGTGGCAGAGATTATTTGGTAGTTGTTTaGATTCTCGTTTGTGTACAGAAGAAAGCGGGTATCAATGTCCTC +
Preference number: 5 (lower is better)
Translates to: IDGGWVGGRDYLVVV*ILVCVQKKAGINVL
Trigger: GAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAAATAATCTCTGCCACCGACCCAGCCACCATCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS GCA 72 bp CCGAACTTCCTCGGGCAGGCCTTGGAAACAGGGCTCTaGAGGGTCCAGCCCTGTGATCCTGCCCACATGGCC +
Preference number: 6 (lower is better)
Translates to: PNFLGQALETGL*RVQPCDPAHMA
Trigger: GGCCATGTGGGCAGGATCACAGGGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CCA 72 bp TCCGATGGGTCCAACCGAACTTCCTCGGGCAGGCCTTaGAAACAGGGCTCTGCAGGGTCCAGCCCTGTGATC +
Preference number: 6 (lower is better)
Translates to: SDGSNRTSSGRP*KQGSAGSSPVI
Trigger: GATCACAGGGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CAA 90 bp AAACATGGCATCCGATGGGTCCAACCGAACTTCCTCGGGCAGGCCTaGGAAACAGGGCTCTGCAGGGTCCAGCCCTGTGATCCTGCCCAC +
Preference number: 6 (lower is better)
Translates to: KHGIRWVQPNFLGQA*ETGLCRVQPCDPAH
Trigger: GTGGGCAGGATCACAGGGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS GCA 72 bp CCAGCCACATGTGAGCCCAAGCTGTGGCCGATGAGGTaGACGTTCTCTGGGCTGTACCCCATCTCTGTCGAC +
Preference number: 6 (lower is better)
Translates to: PATCEPKLWPMR*TFSGLYPISVD
Trigger: GTCGACAGAGATGGGGTACAGCCCAGAGAACGTGCACCTCATCGGCCACAGCTTGGGCTCACATGTGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CAA 72 bp ATCCGATGGGTCCAACCGAACTTCCTCGGGCAGGCCTaGGAAACAGGGCTCTGCAGGGTCCAGCCCTGTGAT +
Preference number: 6 (lower is better)
Translates to: IRWVQPNFLGQA*ETGLCRVQPCD
Trigger: ATCACAGGGCTGGACCCTGCAGAGCCCTGTTTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CAA 72 bp GTTCTCTGGGCTGTACCCCATCTCTGTCGACAACACTaGCACCAAGAAGGCAATCTCAGCGCCCACGACCCG +
Preference number: 6 (lower is better)
Translates to: VLWAVPHLCRQH*HQEGNLSAHDP
Trigger: CGGGTCGTGGGCGCTGAGATTGCCTTCTTGGTGCAAGTGTTGTCGACAGAGATGGGGTACAGCCCAGAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS TCA 72 bp AAACCTCTTTCCCTCCGACTGTGGCCAGCAGAAGGCTaGCGAGCCAGCAGAGCAACATCTGCACGGATGGAA +
Preference number: 6 (lower is better)
Translates to: KPLSLRLWPAEG*RASRATSARME
Trigger: TTCCATCCGTGCAGATGTTGCTCTGCTGGCTCGTCAGCCTTCTGCTGGCCACAGTCGGAGGGAAAGAGGTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CCA 72 bp TGGGGGCACTGTCAGTGTGGATCACGTCTACAAACATaGCATCCGATGGGTCCAACCGAACTTCCTCGGGCA +
Preference number: 6 (lower is better)
Translates to: WGHCQCGSRLQT*HPMGPTELPRA
Trigger: TGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGACAGTGCCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS GCA 72 bp GCCAGCAGAAGGCTGACGAGCCAGCAGAGCAACATCTaGACGGATGGAAACAGACATCCACGGACATCCATA +
Preference number: 6 (lower is better)
Translates to: ASRRLTSQQSNI*TDGNRHPRTSI
Trigger: TATGGATGTCCGTGGATGTCTGTTTCCATCCGTGCAGATGTTGCTCTGCTGGCTCGTCAGCCTTCTGCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CCA 72 bp GTCAGTGTGGATCACGTCTACAAACATGGCATCCGATaGGTCCAACCGAACTTCCTCGGGCAGGCCTTGGAA +
Preference number: 6 (lower is better)
Translates to: VSVDHVYKHGIR*VQPNFLGQALE
Trigger: TTCCAAGGCCTGCCCGAGGAAGTTCGGTTGGACCCATCGGATGCCATGTTTGTAGACGTGATCCACACTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS GCA 72 bp CCAAGGGAATATCTTCGAAGGCCGCTGAATCATCCCTaGCCAGGGCTTGTCATTGGAAAAGCATCCAAGGTG +
Preference number: 6 (lower is better)
Translates to: PREYLRRPLNHP*PGLVIGKASKV
Trigger: CACCTTGGATGCTTTTCCAATGACAAGCCCTGGGCAGGGATGATTCAGCGGCCTTCGAAGATATTCCCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CAA 90 bp CTGGGTCGGTGGCAGAGATTATTTGGTAGTTGTTTGGATTCTCGTTaGTGTACAGAAGAAAGCGGGTATCAATGTCCTCTGGGGACCAAG +
Preference number: 6 (lower is better)
Translates to: LGRWQRLFGSCLDSR*CTEESGYQCPLGTK
Trigger: CTTGGTCCCCAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAAATAATCTCTGCCACCGACCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS TCA 72 bp CCATTGATATCAACAATGGTGGAAAGGATGTTTTTCTaGCATCCCGGCATTTCCTTCCCTCCGTTGGGAAAG +
Preference number: 6 (lower is better)
Translates to: PLISTMVERMFF*HPGISFPPLGK
Trigger: CTTTCCCAACGGAGGGAAGGAAATGCCGGGATGTCAGAAAAACATCCTTTCCACCATTGTTGATATCAATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CAA 72 bp TGGCTGGGTCGGTGGCAGAGATTATTTGGTAGTTGTTaGGATTCTCGTTTGTGTACAGAAGAAAGCGGGTAT +
Preference number: 6 (lower is better)
Translates to: WLGRWQRLFGSC*DSRLCTEESGY
Trigger: ATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAAATAATCTCTGCCACCGACCCAGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5
CDS CAA 72 bp TGGCAGAGATTATTTGGTAGTTGTTTGGATTCTCGTTaGTGTACAGAAGAAAGCGGGTATCAATGTCCTCTG +
Preference number: 6 (lower is better)
Translates to: WQRLFGSCLDSR*CTEESGYQCPL
Trigger: CAGAGGACATTGATACCCGCTTTCTTCTGTACACAAACGAGAATCCAAACAACTACCAAATAATCTCTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026081.5