RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PNLIPRP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042179

Ensembl transcript IDs: ENSMUST00000048644.6, ENSMUST00000235461.2, ENSMUST00000236445.2

Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTGACAGAGCGTTCTTCTTGCACCCGGGCATGTACTGTCCTCCGTTaGGGAAGAAGTCAAAGTGCCCCACCATTTGGTTTGTTCCAAAGC +
Preference number: 1 (lower is better)
Translates to: VTERSSCTRACTVLR*GRSQSAPPFGLFQS
Trigger: GCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR GCA 90 bp TTGCACCCGGGCATGTACTGTCCTCCGTTGGGGAAGAAGTCAAAGTaGCCCACCATTTGGTTTGTTCCAAAGCCCAAGAATGGGATCAAG +
Preference number: 1 (lower is better)
Translates to: LHPGMYCPPLGKKSK*PTIWFVPKPKNGIK
Trigger: CTTGATCCCATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR CCA 90 bp TCAAAATTTGCTTCTACAGGATCCAGTCCTGTAATCCTGCCAAGACCTGGAGTCGCTTCCCCTGCCACGTaGGCTCCTAGGCTGTGGCCA +
Preference number: 2 (lower is better)
Translates to: SKFASTGSSPVILPRPGVASPAT*APRLWP
Trigger: TGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGC...GACTCCAGGTCTTGGCAGGATTACAGGACTGGATCCTGTAGAAGCAAATTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CAA 90 bp TGTGACAGAGCGTTCTTCTTGCACCCGGGCATGTACTGTCCTCCGTaGGGGAAGAAGTCAAAGTGCCCCACCATTTGGTTTGTTCCAAAG +
Preference number: 2 (lower is better)
Translates to: CDRAFFLHPGMYCPP*GKKSKCPTIWFVPK
Trigger: CTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR TCA 90 bp TGTACTGTCCTCCGTTGGGGAAGAAGTCAAAGTGCCCCACCATTTGGTTTGTTCCTAGGCTGTGGCCAATaGGGTGGACTTTGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: CTVLRWGRSQSAPPFGLFLGCGQ*GGLWKQ
Trigger: CTGCTTCCAAAGTCCACCTCATTGGCCACAGCCTAG...GAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR GCA 90 bp CTGTGGGCAGCCTTGATCTGGGCAGGGGAAGCATTTGTTAGACTCAAAGTCCCTGGGTTCCTGACCAGATaGCATCGATGTCCACAATCT +
Preference number: 2 (lower is better)
Translates to: LWAALIWAGEAFVRLKVPGFLTR*HRCPQS
Trigger: AGATTGTGGACATCGATGGCATCTGGTCAGGAACCC...AGGGACTTTGAGTCTAACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR GCA 90 bp GCATTTGTTAGACTCAAAGTCCCTGTAGGAAGCGCAGGGGTATGCAGCAAACCCGGTTCCCTCAAAATTTaGTTCTACAGGATCCAGTCC +
Preference number: 2 (lower is better)
Translates to: AFVRLKVPVGSAGVCSKPGSLKI*FYRIQS
Trigger: GGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACC...GGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTAACAAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR CCA 90 bp TTTGTTAGACTCAAAGTCCCTGTAGGAAGCGCAGGGGTATGCAGCAAACCCATCAAGTGCCCCACCATTTaGTTTGTTCCAAAGCCCAAG +
Preference number: 2 (lower is better)
Translates to: FVRLKVPVGSAGVCSKPIKCPTI*FVPKPK
Trigger: CTTGGGCTTTGGAACAAACCAAATGGTGGGGCACTT...GATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTAACAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CCA 72 bp TTCTACAGGATCCAGTCCTGTAATCCTGCCAAGACCTaGAGTCCGACTTCCTGCTTCCCCTGCCACGTGGGC +
Preference number: 3 (lower is better)
Translates to: FYRIQSCNPAKT*SPTSCFPCHVG
Trigger: GCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAGGACTGGATCCTGTAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR GCA 72 bp CATCGATGTCCACAATCTGTGACAGAGCGTTCTTCTTaGACCCGGGCATGTACTGTCCTCCGTTGGGGAAGA +
Preference number: 3 (lower is better)
Translates to: HRCPQSVTERSS*TRACTVLRWGR
Trigger: TCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CCA 72 bp CGTTCTTCTTGCACCCGGGCATGTACTGTCCTCCGTTaGGGAAGAAGTCAAAGTGCCCCACCATTTGGTTTG +
Preference number: 3 (lower is better)
Translates to: RSSCTRACTVLR*GRSQSAPPFGL
Trigger: CAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR GCA 72 bp GTCGAGCCGGACCTCTTCAGGGGTTCCCTCAAAATTTaGTTCTACAGGATCCAGTCCTGTAATCCTGCCAAG +
Preference number: 3 (lower is better)
Translates to: VEPDLFRGSLKI*FYRIQSCNPAK
Trigger: CTTGGCAGGATTACAGGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR CAA 90 bp TCAGGTGGTTACAAGCCACAAAGTCCCGGGTTCCTGACCAGATGCCATCGATGTGCCCCACCATTTGGTTaGTTCCAAAGCCCAAGAATG +
Preference number: 3 (lower is better)
Translates to: SGGYKPQSPGFLTRCHRCAPPFG*FQSPRM
Trigger: CATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGC...ACATCGATGGCATCTGGTCAGGAACCCGGGACTTTGTGGCTTGTAACCACCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR-3UTR CAA 90 bp GCATTTGTTAGACTCAAAGTCCCTGTAGGAAGCGCAGGGGTATGCAGCAAACCCATGTACTGTCCTCCGTaGGGGAAGAAGTCAAAGTGC +
Preference number: 3 (lower is better)
Translates to: AFVRLKVPVGSAGVCSKPMYCPP*GKKSKC
Trigger: GCACTTTGACTTCTTCCCCAACGGAGGACAGTACAT...GGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTAACAAATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CCA 72 bp CCTCCGTTGGGGAAGAAGTCAAAGTGCCCCACCATTTaGTTTGTTCCAAAGCCCAAGAATGGGATCAAGGGA +
Preference number: 3 (lower is better)
Translates to: PPLGKKSKCPTI*FVPKPKNGIKG
Trigger: TCCCTTGATCCCATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR GCA 72 bp GGCATGTACTGTCCTCCGTTGGGGAAGAAGTCAAAGTaGCCCACCATTTGGTTTGTTCCAAAGCCCAAGAAT +
Preference number: 3 (lower is better)
Translates to: GMYCPPLGKKSK*PTIWFVPKPKN
Trigger: ATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CCA 72 bp GTGCCCCACCATTTGGTTTGTTCCAAAGCCCAAGAATaGGATCAAGGGAGCTGCATCTGTGTGAATCACATC +
Preference number: 3 (lower is better)
Translates to: VPHHLVCSKAQE*DQGSCICVNHI
Trigger: GATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CAA 72 bp CCATCGATGTCCACAATCTGTGACAGAGCGTTCTTCTaGCACCCGGGCATGTACTGTCCTCCGTTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: PSMSTICDRAFF*HPGMYCPPLGK
Trigger: CTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGCTCTGTCACAGATTGTGGACATCGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CAA 72 bp GCGTTCTTCTTGCACCCGGGCATGTACTGTCCTCCGTaGGGGAAGAAGTCAAAGTGCCCCACCATTTGGTTT +
Preference number: 4 (lower is better)
Translates to: AFFLHPGMYCPP*GKKSKCPTIWF
Trigger: AAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAAGAACGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
CDS-3UTR TCA 90 bp ACAGGATCCAGTCCTGTAATCCTGCCAAGACCTGGAGTCCGACTTCCTGCTTCCGTCTTCCTGGCAACTTaGAAATTGGAGGCCTCAATG +
Preference number: 4 (lower is better)
Translates to: TGSSPVILPRPGVRLPASVFLAT*KLEASM
Trigger: CATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGAC...GGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAGGACTGGATCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CAA 72 bp CGTTGGGGAAGAAGTCAAAGTGCCCCACCATTTGGTTaGTTCCAAAGCCCAAGAATGGGATCAAGGGAGCTG +
Preference number: 4 (lower is better)
Translates to: RWGRSQSAPPFG*FQSPRMGSREL
Trigger: CAGCTCCCTTGATCCCATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
3UTR CAA 72 bp TCCTCCGTTGGGGAAGAAGTCAAAGTGCCCCACCATTaGGTTTGTTCCAAAGCCCAAGAATGGGATCAAGGG +
Preference number: 4 (lower is better)
Translates to: SSVGEEVKVPHH*VCSKAQEWDQG
Trigger: CCCTTGATCCCATTCTTGGGCTTTGGAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
CDS-3UTR CCA 90 bp GTTAGACTCAAAGTCCCTGTAGGAAGCGCAGGGGTATGCAGCAAACCCATCTGGTTGTCTATGAAGCCATaGATGATGAACCGAGTCTTC +
Preference number: 4 (lower is better)
Translates to: VRLKVPVGSAGVCSKPIWLSMKP*MMNRVF
Trigger: GAAGACTCGGTTCATCATCCATGGCTTCATAGACAA...CCAGATGGGTTTGCTGCATACCCCTGCGCTTCCTACAGGGACTTTGAGTCTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
CDS-3UTR CAA 90 bp TCTTGCACCCGGGCATGTACTGTCCTCCGTTGGGGAAGAAGTCAAAGTGCCCCAAGTCTTCCTGGCAACTaGAAAATTGGAGGCCTCAAT +
Preference number: 5 (lower is better)
Translates to: SCTRACTVLRWGRSQSAPSLPGN*KIGGLN
Trigger: ATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACT...TGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
CDS-3UTR CAA 90 bp ACAGGATCCAGTCCTGTAATCCTGCCAAGACCTGGAGTCCGACTTCCTGCTTCCCAGTTCTCCTCTCCTTaGTCTATGAAGCCATGGATG +
Preference number: 5 (lower is better)
Translates to: TGSSPVILPRPGVRLPASQFSSP*SMKPWM
Trigger: CATCCATGGCTTCATAGACAAAGGAGAGGAGAACTG...GGAAGCAGGAAGTCGGACTCCAGGTCTTGGCAGGATTACAGGACTGGATCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235461.2
CDS GCA 90 bp GACCGTCCTTCCAGAGAATGTCAAGGAAACACGGTACCTCCAGCGTaGAAAGTTCTTGGCTTCTCCTGTGTTCAGGAAGAACTTCTGTGG +
Preference number: 5 (lower is better)
Translates to: DRPSRECQGNTVPPA*KVLGFSCVQEELLW
Trigger: CCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CCA 90 bp CAGAGAATGTCAAGGAAACACGGTACCTCCAGCGTGCAAAGTTCTTaGCTTCTCCTGTGTTCAGGAAGAACTTCTGTGGCTCCACACTTG +
Preference number: 5 (lower is better)
Translates to: QRMSRKHGTSSVQSS*LLLCSGRTSVAPHL
Trigger: CAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGACATTCTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS GCA 90 bp TTCTCAATTGTTCCCACATCAAGCTTGGCATCAAACTCATTGGAATaGGTAGCACCGGGCTTGATAATTCCCCTGAAGATATCACACTGG +
Preference number: 5 (lower is better)
Translates to: FSIVPTSSLASNSLE*VAPGLIIPLKISHW
Trigger: CCAGTGTGATATCTTCAGGGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CCA 90 bp GTGATCTTGGCTGCGCCCACTTTGGGGAAACTTGGGTTTACCACGTaGTTATTCCAAAGAAACTTGACTTTCTCAATTGTTCCCACATCA +
Preference number: 5 (lower is better)
Translates to: VILAAPTLGKLGFTT*LFQRNLTFSIVPTS
Trigger: TGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS TCA 90 bp CTTTGGGGAAACTTGGGTTTACCACGTGGTTATTCCAAAGAAACTTaGCTTTCTCAATTGTTCCCACATCAAGCTTGGCATCAAACTCAT +
Preference number: 5 (lower is better)
Translates to: LWGNLGLPRGYSKET*LSQLFPHQAWHQTH
Trigger: ATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 72 bp ACTACAGAAGTTGTGCTCTGTCCGCTCCTCCCCCTTTaGCACAGTGATCTTGGCTGCGCCCACTTTGGGGAA +
Preference number: 6 (lower is better)
Translates to: TTEVVLCPLLPL*HSDLGCAHFGE
Trigger: TTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGAGCACAACTTCTGTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 90 bp GGTCTCTTCACTACAGAAGTTGTGCTCTGTCCGCTCCTCCCCCTTTaGCACAGTGATCTTGGCTGCGCCCACTTTGGGGAAACTTGGGTT +
Preference number: 6 (lower is better)
Translates to: GLFTTEVVLCPLLPL*HSDLGCAHFGETWV
Trigger: AACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGGAGCGGACAGAGCACAACTTCTGTAGTGAAGAGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 72 bp AGGATGTCTTCTCTCACGGTCTCTTCACTACAGAAGTaGTGCTCTGTCCGCTCCTCCCCCTTTTGCACAGTG +
Preference number: 6 (lower is better)
Translates to: RMSSLTVSSLQK*CSVRSSPFCTV
Trigger: CACTGTGCAAAAGGGGGAGGAGCGGACAGAGCACAACTTCTGTAGTGAAGAGACCGTGAGAGAAGACATCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 72 bp GTCAAGGAAACACGGTACCTCCAGCGTGCAAAGTTCTaGGCTTCTCCTGTGTTCAGGAAGAACTTCTGTGGC +
Preference number: 6 (lower is better)
Translates to: VKETRYLQRAKF*ASPVFRKNFCG
Trigger: GCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 90 bp CCAGAGAATGTCAAGGAAACACGGTACCTCCAGCGTGCAAAGTTCTaGGCTTCTCCTGTGTTCAGGAAGAACTTCTGTGGCTCCACACTT +
Preference number: 6 (lower is better)
Translates to: PENVKETRYLQRAKF*ASPVFRKNFCGSTL
Trigger: AAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGACATTCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CCA 72 bp CGATGGGTCAGAAAGCTGAAGAGTCTGGAAAGCAGTTaGGTTCTCATTGGTGTAGAGCAGGAAGCGAGTGTT +
Preference number: 6 (lower is better)
Translates to: RWVRKLKSLESS*VLIGVEQEASV
Trigger: AACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAGACTCTTCAGCTTTCTGACCCATCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048644.6
ENSMUST00000236445.2
CDS CCA 72 bp TCAAGGAAACACGGTACCTCCAGCGTGCAAAGTTCTTaGCTTCTCCTGTGTTCAGGAAGAACTTCTGTGGCT +
Preference number: 6 (lower is better)
Translates to: SRKHGTSSVQSS*LLLCSGRTSVA
Trigger: AGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS TCA 72 bp AAATTGGAGGCCTCAATGGTCGATGGGTCAGAAAGCTaGAGAGTCTGGAAAGCAGTTGGGTTCTCATTGGTG +
Preference number: 6 (lower is better)
Translates to: KLEASMVDGSES*RVWKAVGFSLV
Trigger: CACCAATGAGAACCCAACTGCTTTCCAGACTCTTCAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048644.6
ENSMUST00000236445.2
CDS GCA 72 bp TCCAGAGAATGTCAAGGAAACACGGTACCTCCAGCGTaGAAAGTTCTTGGCTTCTCCTGTGTTCAGGAAGAA +
Preference number: 6 (lower is better)
Translates to: SRECQGNTVPPA*KVLGFSCVQEE
Trigger: TTCTTCCTGAACACAGGAGAAGCCAAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 90 bp ACATCAAGCTTGGCATCAAACTCATTGGAATGCGTAGCACCGGGCTaGATAATTCCCCTGAAGATATCACACTGGCGAGTATTGCCGTTA +
Preference number: 6 (lower is better)
Translates to: TSSLASNSLECVAPG*IIPLKISHWRVLPL
Trigger: TAACGGCAATACTCGCCAGTGTGATATCTTCAGGGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 72 bp AGTATTGCCGTTACTTCCAAACAGAGACACTTTGACTaGGCCTGTGACCGTCCTTCCAGAGAATGTCAAGGA +
Preference number: 6 (lower is better)
Translates to: SIAVTSKQRHFD*ACDRPSRECQG
Trigger: TCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCAAAGTGTCTCTGTTTGGAAGTAACGGCAATACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 72 bp TTGGCATCAAACTCATTGGAATGCGTAGCACCGGGCTaGATAATTCCCCTGAAGATATCACACTGGCGAGTA +
Preference number: 6 (lower is better)
Translates to: LASNSLECVAPG*IIPLKISHWRV
Trigger: TACTCGCCAGTGTGATATCTTCAGGGGAATTATCAAGCCCGGTGCTACGCATTCCAATGAGTTTGATGCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 72 bp CTCCTGTGTTCAGGAAGAACTTCTGTGGCTCCACACTaGTATTGTTGGCAAACTTATCAGCATAGTGACCCA +
Preference number: 6 (lower is better)
Translates to: LLCSGRTSVAPH*YCWQTYQHSDP
Trigger: TGGGTCACTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CCA 72 bp GCTGCGCCCACTTTGGGGAAACTTGGGTTTACCACGTaGTTATTCCAAAGAAACTTGACTTTCTCAATTGTT +
Preference number: 6 (lower is better)
Translates to: AAPTLGKLGFTT*LFQRNLTFSIV
Trigger: AACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6
CDS CAA 90 bp ACTTTGGGGAAACTTGGGTTTACCACGTGGTTATTCCAAAGAAACTaGACTTTCTCAATTGTTCCCACATCAAGCTTGGCATCAAACTCA +
Preference number: 6 (lower is better)
Translates to: TLGKLGFTTWLFQRN*TFSIVPTSSLASNS
Trigger: TGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGGAATAACCACGTGGTAAACCCAAGTTTCCCCAAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048644.6