Pregenerated sensors for PNLIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046008Ensembl transcript IDs: ENSMUST00000057270.9, ENSMUST00000238108.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCCGGGGTCCAACCCTGTaGTCCTTCCAATGGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSRGPTL*SFQWLQ Trigger: TTGGAGCCATTGGAAGGATCACAGGGTTGGACCCCG...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR GCA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCGGACTTCTTCAGGGGTaGCCTGGAAGTAAGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSGLLQG*PGSKAQ Trigger: CTGAGCCTTACTTCCAGGGCACCCCTGAAGAAGTCC...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACCCAGCAAAGCCAGTTaGGTTGACGATGCTGTCGGT | + |
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Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAAPSKAS*VDDAVG Trigger: ACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR TCA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCAACATGGAGACAGTGTaGGCAGGACGTCTTCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSNMETV*AGRLPS Trigger: TGAGGGAAGACGTCCTGCTCACACTGTCTCCATGTT...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR GCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCATTCCCTTCCAGCTACTaGTCCCAGCAGCACTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAAFPSSY*SQQHCK Trigger: TTTGCAGTGCTGCTGGGAGCAGTAGCTGGAAGGGAA...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR GCA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAACGTTAACCAACAATaGCACTTCTGCCCCCACGAC | + |
|
Preference number: 4 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSNVNQQ*HFCPHD Trigger: GTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTT...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCTGTCTGGATTCTCGTTaGTGTAGAGGAGAAAGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSCLDSR*CRGESG Trigger: CCCGCTTTCTCCTCTACACCAACGAGAATCCAGACA...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCATCCTCCACTCCCACATaGGAAGCACTTATTTGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAASSTPT*EALICR Trigger: ACGGCAAATAAGTGCTTCCCATGTGGGAGTGGAGGA...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR TCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGGAAAGAAATCTAAGTaGCCCACAGTCTGGCTCATT | + |
|
Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAAGKKSK*PTVWLI Trigger: AATGAGCCAGACTGTGGGTCACTTAGATTTCTTTCC...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR TCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACATTTCTTTCCACTGTaGTCCTTGATGCTCCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAAHFFPL*SLMLPL Trigger: AAGTGGGAGCATCAAGGATCACAGTGGAAAGAAATG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR TCA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCTCCCTCACTGTCTCTTaGCTACAGAAGTTGAACACT | + |
|
Preference number: 4 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSSLTVS*LQKLNT Trigger: AGTGTTCAACTTCTGTAGTCAAGAGACAGTGAGGGA...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR GCA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCCTCGGAACATGTTCTTaGACATGTCAGATAGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSLGTCS*TCQIAS Trigger: ACTGGCTATCTGACATGTGCAAGAACATGTTCCGAG...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAATTCTTCTGGCATCCTaGCATTTCGATTCCTCCGTT | + |
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Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAAILLAS*HFDSSV Trigger: AACGGAGGAATCGAAATGCCAGGATGCCAGAAGAAT...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR TCA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCCTTGACTACAGAAGTTaGACACTCTGCCATCATTTC | + |
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Preference number: 4 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSLDYRS*TLCHHF Trigger: GAAATGATGGCAGAGTGTTCAACTTCTGTAGTCAAG...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACTGTGGCCAATCAGGTaGACATTGTTAAGTGAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAALWPIR*TLLSEY Trigger: ATACTCACTTAACAATGTCCACCTGATTGGCCACAG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR TCA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGGAAATTGGAGTTTCTaGTGTTTGATGCATCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: ALILDFITTVGLGGHTAAGNWSF*CLMHLK Trigger: CTTCAGATGCATCAAACATCAGAAACTCCAATTTCC...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR GCA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCTATCCCAGATCAGACTaGAGAACGTTAACCAACAAT | + |
|
Preference number: 4 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSYPRSD*RTLTNN Trigger: ATTGTTGGTTAACGTTCTGCAGTCTGATCTGGGATA...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCGAAAGAATATTCTTCTaGCATCCTGGCATTTCGATT | + |
|
Preference number: 4 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSERIFF*HPGISI Trigger: AATCGAAATGCCAGGATGCCAGAAGAATATTCTTTC...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CCA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCTCGATGTCAACAATTTaGGAAAGAATATTCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSSMSTI*ERIFFW Trigger: CCAGAAGAATATTCTTTCCCAAATTGTTGACATCGA...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 90 bp | TGGGCCCGGCGTCTGTGTGAATTGCGTCCACAAACTGAGCATCGGTaGGGTCCAGTCGGACTTCTTCAGGGGTGCCCTGGAAGTAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: WARRLCELRPQTEHR*GPVGLLQGCPGSKA Trigger: AGCCTTACTTCCAGGGCACCCCTGAAGAAGTCCGACTGGACCCCACCGATGCTCAGTTTGTGGACGCAATTCACACAGACGCCGGGCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS GCA 90 bp | GTATCCCAGATCAGACTGCAGAACGTTAACCAACAATGCCACTTCTaGCCCCACGACCCGGACGTTCTGGGTAGCCTGGGTATATGTCGT | + |
|
Preference number: 5 (lower is better) Translates to: VSQIRLQNVNQQCHF*PHDPDVLGSLGICR Trigger: ACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAGTCTGATCTGGGATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS GCA 90 bp | ACCCATCTGGGGGCATCCTCCACTCCCACATGGGAAGCACTTATTTaGCGTGAAAAGACTGTAAGAGCTACAGGAGAACCCAGCAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: THLGASSTPTWEALI*REKTVRATGEPSKA Trigger: GGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAAATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS TCA 90 bp | TCTGGGGGCATCCTCCACTCCCACATGGGAAGCACTTATTTGCCGTaGAAAGACTGTAAGAGCTACAGGAGAACCCAGCAAAGCCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: SGGILHSHMGSTYLP*KDCKSYRRTQQSQL Trigger: CAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGTCTTTTCACGGCAAATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS TCA 90 bp | TCACCTGGTACCGCCAACGTGCGAAGTTGCTCTTATCACCGGTGTTaGGGTAAAATGTCTGGTAGAGTCTGCTTGTTTTCCCAGGATATC | + |
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Preference number: 5 (lower is better) Translates to: SPGTANVRSCSYHRC*GKMSGRVCLFSQDI Trigger: GATATCCTGGGAAAACAAGCAGACTCTACCAGACATTTTACCTCAACACCGGTGATAAGAGCAACTTCGCACGTTGGCGGTACCAGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 90 bp | GCAAAGTTTCGAGTTCCTTCCCAGATCCCGTCGATGTCAACAATTTaGGAAAGAATATTCTTCTGGCATCCTGGCATTTCGATTCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: AKFRVPSQIPSMSTI*ERIFFWHPGISIPP Trigger: CGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGGAACTCGAAACTTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACTGAAGCAGCCGAGTTaGTCGAAGCAAACTTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: ALILDFITTVGLGGHTAALKQPS*SKQTSL Trigger: AAGGGAAGTTTGCTTCGACAAACTCGGCTGCTTCAG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACTTGATGCTCCCACTTaGGGTAGAGTTGGGTTGATC | + |
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Preference number: 5 (lower is better) Translates to: ALILDFITTVGLGGHTAALDAPT*GRVGLI Trigger: GATCAACCCAACTCTACCCAAAGTGGGAGCATCAAG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS TCA 90 bp | TTCTGCAAATCTCCAACATCCACATCAGAGTCGAATTCATTGACGTaGGAAGTACCTGGCTGCAGAGAGCCCTTGAAAACTTCATACTGT | + |
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Preference number: 5 (lower is better) Translates to: FCKSPTSTSESNSLT*EVPGCREPLKTSYC Trigger: ACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGATTTGCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACAGTTTTCTTCTCCCTaGTCGATGAAGCCGTGGATA | + |
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Preference number: 5 (lower is better) Translates to: ALILDFITTVGLGGHTAAQFSSP*SMKPWI Trigger: TATCCACGGCTTCATCGACAAGGGAGAAGAAAACTG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACTCGGAACATGTTCTaGCACATGTCAGATAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSTRNMF*HMSDSQ Trigger: CTGGCTATCTGACATGTGCAAGAACATGTTCCGAGT...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCTCTGGTAGAGTCTGCTaGTTTTCCCAGGATATCTGT | + |
|
Preference number: 5 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSSGRVC*FSQDIC Trigger: ACAGATATCCTGGGAAAACAAGCAGACTCTACCAGA...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 90 bp | CACATGTCAGATAGCCAGTTTTCTTCTCCCTTGTCGATGAAGCCGTaGATAATGATACGGGTTTTTCTGTTTGTTCGGAAATTGGAGTTT | + |
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Preference number: 5 (lower is better) Translates to: HMSDSQFSSPLSMKP*IMIRVFLFVRKLEF Trigger: AAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATCTGACATGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS-3UTR CAA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCATTGGGTAGAGTTGGGTaGATCACATTGTTGTACCAA | + |
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Preference number: 5 (lower is better) Translates to: ALILDFITTVGLGGHTAALGRVG*ITLLYQ Trigger: TTGGTACAACAATGTGATCAACCCAACTCTACCCAA...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | TGCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCTTTCGATTCCTCCGTTaGGAAAGAAATCTAAGTGAC | + |
|
Preference number: 5 (lower is better) Translates to: CFNTRLYYNSGTWWSHSSFRFLR*ERNLSD Trigger: GTCACTTAGATTTCTTTCCAAACGGAGGAATCGAAA...GCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | GCTTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCACTGTTTGTTCGGAAATaGGAGTTTCTGATGTTTGAT | + |
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Preference number: 5 (lower is better) Translates to: ALILDFITTVGLGGHTAALFVRK*EFLMFD Trigger: ATCAAACATCAGAAACTCCAATTTCCGAACAAACAG...TGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS-3UTR CAA 90 bp | TTTAATACTAGACTTTATTACAACAGTGGGACTTGGTGGTCACACAGCAGCAGCGTCGATGTCAACAATTaGGGAAAGAATATTCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: FNTRLYYNSGTWWSHSSSVDVNN*GKNILL Trigger: CAGAAGAATATTCTTTCCCAAATTGTTGACATCGAC...GCTGCTGCTGTGTGACCACCAAGTCCCACTGTTGTAATAAAGTCTAGTATTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 72 bp | ACTTCTGCCCCCACGACCCGGACGTTCTGGGTAGCCTaGGTATATGTCGTTCGGGAACCGCCTTTCCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: TSAPTTRTFWVA*VYVVREPPFQS Trigger: GGACTGGAAAGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS CCA 72 bp | AACAATGCCACTTCTGCCCCCACGACCCGGACGTTCTaGGTAGCCTGGGTATATGTCGTTCGGGAACCGCCT | + |
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Preference number: 6 (lower is better) Translates to: NNATSAPTTRTF*VAWVYVVREPP Trigger: AGGCGGTTCCCGAACGACATATACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS GCA 72 bp | ATCAGACTGCAGAACGTTAACCAACAATGCCACTTCTaGCCCCACGACCCGGACGTTCTGGGTAGCCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: IRLQNVNQQCHF*PHDPDVLGSLG Trigger: ACCCAGGCTACCCAGAACGTCCGGGTCGTGGGGGCAGAAGTGGCATTGTTGGTTAACGTTCTGCAGTCTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS GCA 72 bp | TCCAGACAGGGTGACAGTCACCTGGTACCGCCAACGTaGGAAGTTGCTCTTATCACCGGTGTTGAGGTAAAA | + |
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Preference number: 6 (lower is better) Translates to: SRQGDSHLVPPT*EVALITGVEVK Trigger: TTTTACCTCAACACCGGTGATAAGAGCAACTTCGCACGTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 72 bp | GTAATGACCCATCTGGGGGCATCCTCCACTCCCACATaGGAAGCACTTATTTGCCGTGAAAAGACTGTAAGA | + |
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Preference number: 6 (lower is better) Translates to: VMTHLGASSTPT*EALICREKTVR Trigger: TCTTACAGTCTTTTCACGGCAAATAAGTGCTTCCCATGTGGGAGTGGAGGATGCCCCCAGATGGGTCATTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 72 bp | ACTGTAAGAGCTACAGGAGAACCCAGCAAAGCCAGTTaGGTTGACGATGCTGTCGGTGTAAAACTTGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: TVRATGEPSKAS*VDDAVGVKLVA Trigger: AGCTACAAGTTTTACACCGACAGCATCGTCAACCCAACTGGCTTTGCTGGGTTCTCCTGTAGCTCTTACAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS TCA 72 bp | TCTCCAACATCCACATCAGAGTCGAATTCATTGACGTaGGAAGTACCTGGCTGCAGAGAGCCCTTGAAAACT | + |
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Preference number: 6 (lower is better) Translates to: SPTSTSESNSLT*EVPGCREPLKT Trigger: AGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGTCAATGAATTCGACTCTGATGTGGATGTTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 72 bp | CGAGTTCCTTCCCAGATCCCGTCGATGTCAACAATTTaGGAAAGAATATTCTTCTGGCATCCTGGCATTTCG | + |
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Preference number: 6 (lower is better) Translates to: RVPSQIPSMSTI*ERIFFWHPGIS Trigger: CGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGGAACTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CAA 90 bp | AGCAAAGTTTCGAGTTCCTTCCCAGATCCCGTCGATGTCAACAATTaGGGAAAGAATATTCTTCTGGCATCCTGGCATTTCGATTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SKVSSSFPDPVDVNN*GKNILLASWHFDSS Trigger: GGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGGAACTCGAAACTTTGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS GCA 72 bp | AGATGCAGTTCACACTCTCCACTCGGAACATGTTCTTaGACATGTCAGATAGCCAGTTTTCTTCTCCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: RCSSHSPLGTCS*TCQIASFLLPC Trigger: ACAAGGGAGAAGAAAACTGGCTATCTGACATGTGCAAGAACATGTTCCGAGTGGAGAGTGTGAACTGCATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS CAA 72 bp | TCGAGTTCCTTCCCAGATCCCGTCGATGTCAACAATTaGGGAAAGAATATTCTTCTGGCATCCTGGCATTTC | + |
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Preference number: 6 (lower is better) Translates to: SSSFPDPVDVNN*GKNILLASWHF Trigger: GAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAGGAACTCGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 72 bp | CCGTCGATGTCAACAATTTGGGAAAGAATATTCTTCTaGCATCCTGGCATTTCGATTCCTCCGTTTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: PSMSTIWERIFF*HPGISIPPFGK Trigger: CTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057270.9 |
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| CDS CCA 72 bp | GATAGCCAGTTTTCTTCTCCCTTGTCGATGAAGCCGTaGATAATGATACGGGTTTTTCTGTTTGTTCGGAAA | + |
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Preference number: 6 (lower is better) Translates to: DSQFSSPLSMKP*IMIRVFLFVRK Trigger: TTTCCGAACAAACAGAAAAACCCGTATCATTATCCACGGCTTCATCGACAAGGGAGAAGAAAACTGGCTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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| CDS CAA 72 bp | TGGATAATGATACGGGTTTTTCTGTTTGTTCGGAAATaGGAGTTTCTGATGTTTGATGCATCTGAAGTAATT | + |
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Preference number: 6 (lower is better) Translates to: WIMIRVFLFVRK*EFLMFDASEVI Trigger: AATTACTTCAGATGCATCAAACATCAGAAACTCCAATTTCCGAACAAACAGAAAAACCCGTATCATTATCCA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057270.9 ENSMUST00000238108.2 |
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